CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020008	Haemophilus influenzae strain 5P28H1 chromosome, complete genome	1 crisprs	DEDDh,DinG,cas3,WYL	1	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020008_1

1432806-1432900

Orphan

Consensus_repeat	Method
CAGGAGCTGCTGCCTGTGGTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020008_1

>merge|NZ_CP020008|1|1432806-1432900|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAGCAGGAGCTGCTGTCTGTGGTGCT

>NZ_CP020008|1|1|1432806-1432900|CRISPRCasFinder
CAGGAGCTGCTGCCTGTGGTGCT	TGTGCAGTAGTAGCAGGAGCTGCTGCCTGTGGTGCTTGTGCAGTAGTAG
CAGGAGCTGCTGTCTGTGGTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020008.1\|WP_005657614.1\|1429550_1430093_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP020008.1\|WP_005652934.1\|1422043_1422337_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|226294
NZ_CP020008.1\|WP_005687337.1\|1436509_1436968_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP020008.1\|WP_042599680.1\|1424248_1424569_+\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP020008.1\|WP_011272709.1\|1442051_1443305_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP020008.1\|WP_075913133.1\|1440791_1441973_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP020008.1\|WP_105182702.1\|1444917_1446114_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_CP020008.1\|WP_042599677.1\|1433549_1436210_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP020008.1\|WP_005657628.1\|1423550_1424243_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP020008.1\|WP_005663527.1\|1430251_1431676_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP020008.1\|WP_048949917.1\|1427472_1429539_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_CP020008.1\|WP_005657620.1\|1425358_1426603_-\|uracil-permease	unknown	unknown	gnl\|CDD\|273276
NZ_CP020008.1\|WP_005694297.1\|1438833_1440741_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP020008.1\|WP_042599676.1\|1444085_1444886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020008.1\|WP_011272711.1\|1437124_1438567_-\|YdgA-family-protein	unknown	unknown	gnl\|CDD\|227644
NZ_CP020008.1\|WP_042599681.1\|1422336_1423527_+\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|225504
NZ_CP020008.1\|WP_042599679.1\|1424597_1425293_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|168719
NZ_CP020008.1\|WP_038441057.1\|1446115_1446814_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_CP020008.1\|WP_005657618.1\|1426706_1427333_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP020008.1\|WP_005652973.1\|1443325_1443988_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415

Protein	Function_ID	Function_description	E-value
NZ_CP020008.1\|WP_005657614.1\|1429550_1430093_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	3.18643e-99
NZ_CP020008.1\|WP_005652934.1\|1422043_1422337_+\|LapA-family-protein	gnl\|CDD\|226294	COG3771, COG3771, Predicted membrane protein [Function unknown].	2.02351e-38
NZ_CP020008.1\|WP_005687337.1\|1436509_1436968_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	8.28169e-91
NZ_CP020008.1\|WP_042599680.1\|1424248_1424569_+\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	1.40735e-57
NZ_CP020008.1\|WP_011272709.1\|1442051_1443305_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP020008.1\|WP_075913133.1\|1440791_1441973_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP020008.1\|WP_105182702.1\|1444917_1446114_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP020008.1\|WP_042599677.1\|1433549_1436210_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP020008.1\|WP_005657628.1\|1423550_1424243_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	2.06916e-142
NZ_CP020008.1\|WP_005663527.1\|1430251_1431676_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP020008.1\|WP_048949917.1\|1427472_1429539_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP020008.1\|WP_005657620.1\|1425358_1426603_-\|uracil-permease	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	9.49123e-138
NZ_CP020008.1\|WP_005694297.1\|1438833_1440741_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP020008.1\|WP_011272711.1\|1437124_1438567_-\|YdgA-family-protein	gnl\|CDD\|227644	COG5339, COG5339, Uncharacterized protein conserved in bacteria [Function unknown].	7.84943e-114
NZ_CP020008.1\|WP_042599681.1\|1422336_1423527_+\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|225504	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism].	0
NZ_CP020008.1\|WP_042599679.1\|1424597_1425293_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|168719	PRK06893, PRK06893, DnaA regulatory inactivator Hda.	1.48699e-148
NZ_CP020008.1\|WP_038441057.1\|1446115_1446814_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	5.2642e-122
NZ_CP020008.1\|WP_005657618.1\|1426706_1427333_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.24161e-133
NZ_CP020008.1\|WP_005652973.1\|1443325_1443988_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	7.9376e-97

>NZ_CP020008.1|WP_005663527.1|1430251_1431676_-|dihydrolipoyl-dehydrogenase
MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKHANKNGIYFSEPRIELDEVRAGKEAVVAKLTGGLAGMAKARKVTVVEGLATFTDSHTLVARDRDGNPTTVKFDNAIIAAGSRPVQLPFIPHEDPRIWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKDVVGIYTKQVEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNAKAKKK
>NZ_CP020008.1|WP_005657614.1|1429550_1430093_-|adenine-phosphoribosyltransferase
MTTQLDLIKSSIKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDKGITKVLGTESRGFIFGAPVALALGLPFELVRKPKKLPRETISQSYQLEYGQDTLEMHVDAISQGDNVLIIDDLLATGGTVEATVKLVQRLGGTVKHAAFVINLPELGGEKRLNNLGVDCYTLVNFEGH
>NZ_CP020008.1|WP_048949917.1|1427472_1429539_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGIGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNSVVSNMLGLLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQKSSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFHPKFLTAVPKANATITQPPSTPSAVENTGNYVDVPVLSQSIKSAYSQAKPNKTSIPNLASLSALDALEHLTQLENQERQEHKAESLAVVSETLHHIQELDEEKSHKKMTALPVREMTEPKPKHIEKPTLPSNAAQAPQKNSTEENSSDDNVEIAQDEQEILSADTYRWEWSNPELAKADTGVRPSDIKQAILKDITPELRLKIITKTQQQDEWADIVERSGLTGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQDRSIKNLAEALSKLQGKDIRLTINLDDSNVTTPIEYRRNIYQALREKAQNELQKDSKLQILLNEFDAKLDVESIRPV
>NZ_CP020008.1|WP_005657618.1|1426706_1427333_-|uracil-phosphoribosyltransferase
MKLVEVKHPLVKHKLGVMREAEIDTKKFRELATEIGSLLTYEATSDLETEKVTINSWNGPVEIDRIKGKKVTVVPILRAGLGMMDGVLEHVPSARISVVGIYRNEETLKPVPYFQKLASDLEERLAIVVDPMLATGGSMIATLDLLKAKGCKHIKVLVLVAAPEGIKALEAAHPDIELYCASIDSHLNEQGYIIPGLGDAGDKIFGTK
>NZ_CP020008.1|WP_005657620.1|1425358_1426603_-|uracil-permease
MTNQTSSFPSENQSKLKQSFVGLQMLFVAFGALVLVPLITGLDSNTALLTAGVGTLLFQFCTGKQVPIFLASSFAFIAPIQYGVQTWGIATTMGGLAFTGLVYFALSTLVKLRGAEALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGKNSNYAYNDAVLVSMVTLLTTLSVAVFAKGLMKLIPIMFGITVGYILCLFLGLINFQPVIDAPWFSLPKLTTPEFNLEAILYMLPIAIAPAVEHVGGIMAISSVTGKDFLKKPGLHRTLLGDGVATAAASLVGGPPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAISFCGKVGAFLSTIPTIVMGGIMMLVFGSIAVVGISTLIRGKVDVTEARNLCIISVVMTFGIGNMFVDVGNVSLKGISLCAIVAIILNLVLPKAKNEVE
>NZ_CP020008.1|WP_042599679.1|1424597_1425293_-|DnaA-regulatory-inactivator-Hda
MNKQLPLPIHQIDDATLENFYGDNNVLLLDSLRKNSSDLKQPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKEILNL
>NZ_CP020008.1|WP_042599680.1|1424248_1424569_+|stress-response-translation-initiation-inhibitor-YciH
MSDSVLVYSTDVGRIKEEKASVVRPKGDGVVRIQKQTSGRKGVGVSVITGLDLSDEDLKKLAAELKKRCGCGGSVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG
>NZ_CP020008.1|WP_005657628.1|1423550_1424243_+|orotidine-5'-phosphate-decarboxylase
MTSKIIVALDYEKEAEALALVDQIDPSLCRLKVGKEMFTTLGINFVKQLHQRNFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLRMMEEAKKILEPYGKDAPLLIAVTVLTSMEDLDLLQIGINASPMEQVLRLAHLTQRAGLDGVVCSPQEVEILRNTCGKEFKLVTPGIRPIGTDFGDQRRVMTPTAAIRAGSDYLVIGRPITQADNPAEVLRSINVSIG
>NZ_CP020008.1|WP_042599681.1|1422336_1423527_+|lipopolysaccharide-assembly-protein-LapB
MIELLFLLLPIAAAYGWYMGRRSAKKDQDDISNKLSRDYVTGVNFLLSNQTDKAVDLFLDMLQKQEIENEIESHSQFEAELTLGNLFRSRGEVDRALRIHQALDLSPNYTFEQKLLAKQQLARDFMVVGFFDRAENLYILLVDEPEFAENALQQLLVIYQKTKEWKKAVNIAEKLAKIKPQENNIELAQCYCEYSQSLEPESAVEKRSVLQKALLVSPTCVRASLLLANLAMLDGQYQQAAKILEKVLEQNPDYTGEILLPLKHCYEELNQLDNFELFLIRAGQIINNDEVELALVKLIEEKDGKSAAQAKLYQQLTKNPSTLIFHRFMQYQIDDAEDGRGKESLILLHKMVGERIKQTSPYRCTNCGYQIHKLLWNCPSCRQWESIKPVSNQEHN
>NZ_CP020008.1|WP_005652934.1|1422043_1422337_+|LapA-family-protein
MIKYILGIVIFIAIVLVAITIGANNDQIITFNYIVAESQFQLSSLVAILFGLGLILGWLITAFFYIKLKLKNMALARQVKRQTLQINELTTTRDKVA
>NZ_CP020008.1|WP_042599677.1|1433549_1436210_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSEILKNDIDPIETQDWLQSLDSLIREEGVERAQYIVEQVIGQARTSGVSLPTGVTTDYVNTIPVSEQPAYPGDHAIERRIRSAVRWNAIAMVLRSQKKDLDLGGHISTFQSAATMYEVCYNHFFKAATEKNGGDLIFFQGHAAPGMYARAFLEGRLTEEQMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLDNRGLKDTKDQKVYAFLGDGEMDEIESKGALTFAAREKLDNLIFTISCNLQRLDGPVNGNGKIVQELEGLFTGAGWEVIKVLWGSDWDKLFAKDTSGKLTQLMMEVVDGDYLTFKSKDGAYIREHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQNATKPVVILAHQVKGYKIPEAESKNTAHQSKKMSYESLKGFRDFFELPLTDEQVEKLEYIKFAEGTPEYEYLHGHRKALNGYVPARRTKFDVEYKVPALEEFKALLEEQPRGISTTMAFTRALNILLKDKNIGKTIVPMIADEARTFGMEGLFRQVGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEGINELGATASWLAAANSYSVNNQPMIPFFIYYSMFGFQRVGDMMWAAGDQLARGFMVGGTSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPSFAFEVAVIMQDGINRMYGEKQEDVFYYMTTLNEVMDQPAMPAGAEEGIRKGLYKFETVEGKKGKGHVQLLGSGAIMRHVREAAQILANDYGVTSDVFSAPSFNELAREGHDAARWNLLHPTETQRVPYVAQVLADLPTVASTDYVKGYADQIRAFVPSKHYHVLGTDGFGRSDSRANLREHFEVDARYVVVAALSQLAKEGTVSNQVVADAIAKFGLNVDRINPLYA
>NZ_CP020008.1|WP_005687337.1|1436509_1436968_+|methylglyoxal-synthase
MQTTTRTLTQHKRIALVAHDSCKKNLLNWTQKHKEALKPHILYATGTTGHILERETGLSIQSLLSGPMGGDQQLGGLIAEKKIDMMIFFWDPMNAAPHDPDVKALMRIATVWNIPVAINQSSADFLLTSVLFEQDVEIDVPDYEGYLKERLA
>NZ_CP020008.1|WP_011272711.1|1437124_1438567_-|YdgA-family-protein
MKKSKIAAGVVISLAAVWCAGAWFTGKKAEEEYLHQLKQLNQLFTKTEALEESKIFYKNIKFERGLFASHIQDQIEIHKANETIIIPLSSTLYHGPLPLDRVAKLNFVPAIFSSQTLLGKNATTQAFFDITESEKPLQLNFAMNYSLSGNAELKLASGQYHNEQSKTDFDWSNVVLNIDLNQNTPNNYVLSVDTFNSNAPNHAVSTASSIKIKDLVVQGSLQSTKWPFIYSGNINSKIGYFEQNTESPETGEKFSLIQKNSQANLTTQVEGDTVNIINKTNLDELHINGNNLGKVTNNVEFNHIDGNALQELLNILVAIGKADSDMPLSKTLVQKLQQAGMIIANNQPQIKFTPLSISDEKGKVALDLNIALVPNPKFDLMRSGLYKQFKDFSINFDVNKETAISLLSKFVPENQKQDFVHRLNELVTEGEVNDIIVNTDKTVTLTLALENNDLKLNGKPIPEEQLKVVLFILVMGGFGR
>NZ_CP020008.1|WP_005694297.1|1438833_1440741_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMDGDKARVIENAEGARTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITRADNGDAWVNVKGDKLAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGLGSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEAAEKAKIELSSAQSTEVNLPYITADATGPKHLALNITRAKLEALVEDLVASSIESLKAVLKDADKGVSEIHDIILVGGQTRMPLVQQKVAEFFGKEARKDVNPDEAVAIGAAVQGGVLKGDVKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGVINVSAKDKNTGKEQQIRIQASSGLSDEEIQQMVRDAEANADADRKFEEVVQARNQADGIAHATRKQIAEAGDALSVADKEKIEAAVAELETAAKGEDKAEIEAKIEAVIKASEPLMQAVQAKAQQAGGEQPQQSSAKDDGVVDAEFEEVKDNK
>NZ_CP020008.1|WP_075913133.1|1440791_1441973_+|molecular-chaperone-DnaJ
MYLFSATNYKITMAKKDYYEVLGLQKGASEDDIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGGGTGGFGGGFGGADFGDMFGDIFGDIFGGGRGRQRVVRGEDLRYDLEISLEEAVKGTTKDIQINTLAHCDSCGGSGAEKGSKVETCPHCHGSGRIRRQQGFFVSESICPTCHGSGKKIEKPCRSCHGEGRVHKKENLSVKIPAGVDTGNQLRLAGKGAAGENGAPAGDLYVVIHVREHNIFERDGSNLYCEVPISFATAALGGEIEVPTLDGRVKLKIPAETQTGKLFRMRGKGVASTRSGYAGDLICRIVVETPVNLTSEQKELLHKLEESLQGKDLSKHAPKSSGFLDGVKKFFDNLGKSDK
>NZ_CP020008.1|WP_011272709.1|1442051_1443305_-|glutamate-5-semialdehyde-dehydrogenase
MLEQMGKQAKDAAFILAQLTTAEKNCALSIIAEQLQQQAPLILAENAKDIELAKQNGLSDALIDRLLLTQERLQSIANDVRHVISLADPVGKIIDGGTLDSGLKIERVRTPLGVIGTIYEARPNVTIDVASLCLKTGNAVILRGGKETQFSNKILIEVVQNALEQAGLPKFAVQAITDPNRELVMQLLKLDRYVDMIIPRGGSGLHELCKQHSTIPVIVGGVGVCHTFVEKSADQNKAIFVIDNAKTQRPSTCNTLETLLVQHSIAEEFLPKLVSHLATKNVKYHAKSTALNILKQAGANVCEVTEKELRKEWGSLDLNVVVVEDIHAAIEHIRQYGTQHSESILTSSQNLARQFINQVDAAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTSYKWVCEGEYTVRK
>NZ_CP020008.1|WP_005652973.1|1443325_1443988_-|trimeric-intracellular-cation-channel-family-protein
MLLSILYIIGITAEGMTGALAAGREKMDIFGVIIIASVTAIGGGSVRDVLLGHYPLGWVKHPEYFLMVASAAVITVYVAPFINHFMRYFRTIFLVLDAMGLVVYSIIGAQIAMDMGHSLTIVCIAGCITGAFGGVLRDMLCNRIPLVFQKELYASIALFATLTYYALSTLQVEHTLAVLLTLISSFTLRLLAIHFEWGLPVFNYQELTSEEQDKLPNKKK
>NZ_CP020008.1|WP_042599676.1|1444085_1444886_+|hypothetical-protein
MSEQSSKYIAALLAVLSISMVLGIDLFIFSLQSEKQTMPHLGIGVLVAQLISLLVFYRGEICPGQRGRLIKVNLTFAIYWAVWLLISLLQNNHMLTNVMSVCGLSVVYFIWKQPKSEKIRNSFLLMAALIAGLGCLSYLMIFTVLPASAFAEYNPFAPILSGVILANLALVIARNRLQGFIALLPLVMIILLALNALAIFLFLLLNGMESAVNSDSIFAYIIYFVCHFVIAAILILHSFQKWKLSANSLFILLFIAVCLPLWMVFV
>NZ_CP020008.1|WP_105182702.1|1444917_1446114_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MNQQKSTFIFILTLGILSMLPPFGVDMYLPSFLEIAKDLDVSPEQVQHTRTSFAYGMAFGQLFWGPFGDSFGRKPIILLGVIVGALTALVLTEINSVGNFTALRFVQGFFGAAPVVLSGALLRDLFSKDQLSKVMSTITLVFMLAPLVAPIIGGYIVKFFHWHAIFYVISLVGLLAAALVFFIIPETHKKENRIPLRLNIIARNFLLLWKQKEVLGYMFAASFGFGGLFAFVTAGSIVYIGIYGVPVDQFGYFFMMNIVTMIFASFLNSRFVTKVGAETMLRVALTIQFLSGMWLILTALLDLGFWSMAIGVALFIGPNPVISSNTMASALERCPQMAGTANSLIGSVRFAVGAIMGSLVASMKMDTAAPMLFTMGGCVAISVLAYYFLTSRNLKSRG
>NZ_CP020008.1|WP_038441057.1|1446115_1446814_-|16S-rRNA-pseudouridine(516)-synthase-RsuA
MRLDKFIAENTGLTRSQATKAIRQSAVKINGEIVKSGAVQISQEDKIYFEDELLTWVEEGQYFMLHKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGFVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYAAACSEGILLRGEKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020008_1	1.1\|1432829\|49\|NZ_CP020008\|CRISPRCasFinder	1432829-1432877	49	NZ_CP020008.1	1432793-1432841	1	0.98

1. spacer 1.1|1432829|49|NZ_CP020008|CRISPRCasFinder matches to position: 1432793-1432841, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

373150 : 441107

Haemophilus_phage(13.16%)

portal,terminase,tail,holin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005666644.1\|373150_373891_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_005632159.1\|373975_374320_+	YggL family protein	NA	NA	NA	NA
WP_005666641.1\|374525_375056_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_005656333.1\|375048_375330_+	chaperone NapD	NA	NA	NA	NA
WP_041174733.1\|375366_377850_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_005666637.1\|377903_378743_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_011271996.1\|378742_379606_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_005691774.1\|379602_380055_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_005649107.1\|380069_380672_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_005649108.1\|380831_381476_-	adenylate kinase	NA	NA	NA	NA
WP_011271997.1\|381560_382838_-	MFS transporter	NA	NA	NA	NA
WP_042599468.1\|382979_383996_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.1e-88	48.9
WP_105182546.1\|384168_385101_-	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA
WP_005688947.1\|385513_386236_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-27	34.5
WP_005649115.1\|386232_386970_+	ABC transporter permease	G3M9Y4	Bacillus_virus	2.8e-10	24.5
WP_011961725.1\|386991_387936_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005654829.1\|387945_388593_+	thiaminase II	NA	NA	NA	NA
WP_005654831.1\|388692_389508_-	metal ABC transporter permease	NA	NA	NA	NA
WP_005654833.1\|389500_390349_-	metal ABC transporter permease	NA	NA	NA	NA
WP_005654835.1\|390352_391273_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-17	25.4
WP_105182547.1\|391272_392154_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005659920.1\|392519_393398_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_080316047.1\|393623_394796_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_042611895.1\|394896_395436_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_042611894.1\|395507_396419_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011272008.1\|396427_397534_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_038440737.1\|397543_398815_+\|tRNA	histidine--tRNA ligase	A0A1V0SLE3	Klosneuvirus	2.0e-27	26.2
WP_011272010.1\|398832_399447_+	YfgM family protein	NA	NA	NA	NA
WP_005659903.1\|399497_399692_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005656373.1\|399691_400033_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011272011.1\|400072_401932_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.3e-109	42.3
WP_005669116.1\|401949_402636_-	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_011272012.1\|402686_403211_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_005649164.1\|403223_403547_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
WP_005691745.1\|403604_404021_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-53	80.6
WP_005649169.1\|404044_405259_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
WP_005654871.1\|405325_405778_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_105182548.1\|405830_406556_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_013525579.1\|407204_407663_-	hypothetical protein	F6MIM0	Haemophilus_phage	4.9e-45	55.8
WP_042611893.1\|407659_408262_-	hypothetical protein	Q94MX9	Haemophilus_virus	3.0e-98	94.0
WP_084999867.1\|408273_409896_-\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	6.3e-220	67.4
WP_084999855.1\|410092_413743_-\|tail	phage tail protein	A0A0R6PIC9	Moraxella_phage	2.0e-141	37.4
WP_080291956.1\|413746_414466_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-34	40.2
WP_042611836.1\|414404_415112_-	C40 family peptidase	A0A1B1IV85	uncultured_Mediterranean_phage	3.4e-53	43.2
WP_084999857.1\|415113_415764_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	5.5e-34	39.6
WP_038440720.1\|415807_416326_-	antirepressor	Q0H8C7	Salmonella_phage	1.3e-33	52.8
WP_105182549.1\|416742_417621_-	phage repressor protein/antirepressor Ant	D0UIK6	Aggregatibacter_phage	4.7e-129	78.4
WP_042594865.1\|418116_418656_-	hypothetical protein	NA	NA	NA	NA
WP_038440713.1\|419401_419734_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	2.7e-16	38.5
WP_042611832.1\|419742_423135_-	tape measure protein	A0A2P1CKJ3	Pantoea_phage	1.8e-35	23.5
WP_101494098.1\|423186_423423_-	hypothetical protein	NA	NA	NA	NA
WP_005651224.1\|423438_423741_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015701504.1\|423724_424108_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_038440708.1\|424176_424401_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_038440705.1\|424445_424853_-	hypothetical protein	NA	NA	NA	NA
WP_038440702.1\|425127_425778_-	hypothetical protein	NA	NA	NA	NA
WP_005651206.1\|425780_426191_-\|tail	phage tail protein	NA	NA	NA	NA
WP_042593432.1\|426208_426730_-\|tail	tail protein	K7PKQ5	Enterobacteria_phage	2.6e-18	50.0
WP_042611831.1\|426732_427044_-	hypothetical protein	NA	NA	NA	NA
WP_042593431.1\|427024_427348_-	DUF2190 family protein	NA	NA	NA	NA
WP_105182746.1\|427426_429454_-	peptidase S14	A0A1W6JT88	Pseudomonas_phage	4.8e-201	56.7
WP_005668565.1\|429404_430928_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	2.7e-156	57.7
WP_005633930.1\|430931_431150_-	hypothetical protein	NA	NA	NA	NA
WP_042611829.1\|431146_433270_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	1.7e-273	66.8
WP_048950255.1\|433272_433746_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	4.9e-40	53.6
WP_042593427.1\|434019_434301_-	hypothetical protein	Q776X1	Haemophilus_phage	1.9e-31	75.6
WP_042593426.1\|434212_434536_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	7.8e-21	54.6
WP_042593425.1\|434528_435131_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.7e-56	53.4
WP_042593424.1\|435099_435456_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_042593423.1\|435695_436214_-	antitermination protein	G8C7V7	Escherichia_phage	7.6e-18	33.3
WP_042593422.1\|436214_436760_-	NinG recombination protein	D0UIK8	Aggregatibacter_phage	1.7e-60	69.1
WP_042593421.1\|436852_437269_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	9.6e-64	85.4
WP_005633909.1\|437305_437530_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
WP_042593364.1\|437526_438162_-	replication P	A0A1I9KFB0	Aeromonas_phage	9.0e-05	25.5
WP_042611846.1\|438146_438905_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	1.6e-61	67.3
WP_042611845.1\|438901_439576_-	antirepressor	D0UIL6	Aggregatibacter_phage	4.2e-61	55.1
WP_005671478.1\|439624_440065_-	hypothetical protein	A0A0U4B0E3	Pseudomonas_phage	8.1e-13	32.6
WP_005662314.1\|440113_440320_-	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.9e-17	67.7
WP_042611844.1\|440450_441107_+	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	7.2e-66	58.4

DBSCAN-SWA_2

445123 : 453313

Mannheimia_phage(42.86%)

integrase

attL 439620:439634|attR 456307:456321

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
439620:439634	attL	NA	NA	NA	NA
WP_105182550.1\|445123_445975_+	hypothetical protein	D0UIK6	Aggregatibacter_phage	3.1e-53	42.1
WP_105182551.1\|446058_446406_+	hypothetical protein	NA	NA	NA	NA
WP_105182552.1\|446402_446696_+	hypothetical protein	NA	NA	NA	NA
WP_053521080.1\|446707_447628_+	recombinase	A0A0M3LNU3	Mannheimia_phage	4.1e-115	70.9
WP_042611920.1\|447602_448253_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	4.8e-86	72.5
WP_013525617.1\|448252_448687_+	single-stranded DNA-binding protein	A0A059WRL7	Vibrio_phage	7.5e-19	36.2
WP_005688799.1\|448788_449358_+	hypothetical protein	NA	NA	NA	NA
WP_005688797.1\|449354_449591_+	hypothetical protein	NA	NA	NA	NA
WP_005647194.1\|449587_449947_+	hypothetical protein	NA	NA	NA	NA
WP_042611919.1\|449954_451118_+	DNA cytosine methyltransferase	A0A2I7RFJ9	Vibrio_phage	1.5e-90	46.1
WP_105182553.1\|451136_451658_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.6e-23	42.0
WP_005668273.1\|451661_451949_+	hypothetical protein	NA	NA	NA	NA
WP_005651299.1\|452075_452390_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005641600.1\|452287_453313_+\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	7.4e-57	35.4
456307:456321	attR	NA	NA	NA	NA

DBSCAN-SWA_3

635165 : 642887

Macacine_betaherpesvirus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005649541.1\|635165_636158_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	2.0e-51	38.9
WP_105182582.1\|636220_636574_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.5e-30	58.3
WP_105182583.1\|637172_638036_+	FkbM family methyltransferase	A0A218MM68	uncultured_virus	9.1e-16	28.2
WP_105182584.1\|638040_638148_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-05	65.6
WP_105197411.1\|638151_638253_-\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-06	71.9
WP_042593284.1\|638476_638830_-	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	1.2e-06	34.5
WP_005657931.1\|638920_639595_-	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_042593283.1\|639640_640315_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_005690204.1\|640466_642887_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	8.5e-120	35.1

DBSCAN-SWA_4

1286449 : 1294958

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038441344.1\|1286449_1287433_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	33.2
WP_005694258.1\|1287435_1288428_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	30.8
WP_005653671.1\|1288437_1289325_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_105182749.1\|1289339_1290311_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_080317064.1\|1290430_1292614_-	DNA helicase II	A7KV33	Bacillus_phage	3.9e-116	37.7
WP_005686506.1\|1293220_1293856_-	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	8.7e-16	30.3
WP_011272433.1\|1293856_1294282_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
WP_011272434.1\|1294274_1294958_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7

DBSCAN-SWA_5

1459628 : 1522381

Mannheimia_phage(53.12%)

portal,head,terminase,protease,tail,plate,integrase,capsid,tRNA

attL 1471358:1471381|attR 1537911:1537934

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011961904.1\|1459628_1461599_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_011272700.1\|1461595_1461769_+	DUF5363 domain-containing protein	NA	NA	NA	NA
WP_105182703.1\|1461870_1465311_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_011272698.1\|1465363_1466755_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
WP_005694317.1\|1466948_1467839_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_011272697.1\|1467831_1469145_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005689857.1\|1469432_1470113_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_005689855.1\|1470270_1471347_+	homoserine O-acetyltransferase	NA	NA	NA	NA
1471358:1471381	attL	NA	NA	NA	NA
WP_005689853.1\|1471401_1474044_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.1e-103	32.3
WP_005687300.1\|1474209_1475973_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_048942349.1\|1476109_1476502_-	hypothetical protein	NA	NA	NA	NA
WP_005687296.1\|1476821_1477628_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_005659609.1\|1477679_1478381_+	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	3.3e-08	29.1
WP_005659606.1\|1478424_1479285_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA
WP_042593951.1\|1479397_1481446_-\|tRNA	methionine--tRNA ligase	A0A2K9V939	Bandra_megavirus	2.2e-60	29.3
WP_042593952.1\|1481596_1482709_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_042593953.1\|1482755_1483418_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_080316015.1\|1483522_1484206_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_154231901.1\|1484277_1484433_+	hypothetical protein	NA	NA	NA	NA
WP_011272688.1\|1484914_1485925_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.8e-116	60.4
WP_038441084.1\|1485934_1487716_-\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	5.0e-218	65.4
WP_011272686.1\|1487880_1488696_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	6.9e-66	60.5
WP_042593955.1\|1488716_1489766_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	1.7e-88	51.3
WP_011272685.1\|1489777_1490428_+\|terminase	terminase	Q19US0	Mannheimia_phage	4.1e-45	46.0
WP_005668469.1\|1490721_1491228_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	2.8e-33	51.0
WP_005668467.1\|1491227_1491437_+\|tail	tail protein	NA	NA	NA	NA
WP_005668464.1\|1491438_1491660_+	hypothetical protein	NA	NA	NA	NA
WP_005668462.1\|1491652_1492171_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
WP_011272684.1\|1492155_1492506_+	chemotaxis protein	NA	NA	NA	NA
WP_105182705.1\|1492680_1492950_+	molecular chaperone DnaK	A0A0M3LS11	Mannheimia_phage	7.7e-06	37.4
WP_038441087.1\|1492946_1493210_+	hypothetical protein	NA	NA	NA	NA
WP_038441089.1\|1493175_1493646_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.3e-28	45.3
WP_011272680.1\|1493645_1494107_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	5.7e-25	48.2
WP_005653079.1\|1494107_1494455_-	hypothetical protein	NA	NA	NA	NA
WP_011272679.1\|1494558_1494741_+	hypothetical protein	Q19UR2	Mannheimia_phage	8.8e-06	47.8
WP_011272678.1\|1494751_1495090_-	hypothetical protein	NA	NA	NA	NA
WP_075913143.1\|1495165_1495339_+	hypothetical protein	Q19UR2	Mannheimia_phage	3.2e-05	53.3
WP_042593957.1\|1495316_1495577_-	hypothetical protein	NA	NA	NA	NA
WP_006995348.1\|1498674_1499127_+	hypothetical protein	NA	NA	NA	NA
WP_011272674.1\|1499224_1499782_+	hypothetical protein	NA	NA	NA	NA
WP_005653088.1\|1499790_1500219_+	hypothetical protein	NA	NA	NA	NA
WP_005668437.1\|1500322_1500922_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	7.1e-44	66.0
WP_005689801.1\|1500923_1501262_+	hypothetical protein	Q19UQ6	Mannheimia_phage	4.5e-19	56.6
WP_105182706.1\|1501258_1502173_+\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	1.3e-92	58.6
WP_005689797.1\|1502162_1502699_+\|tail	phage tail protein I	M1T2R2	Escherichia_phage	7.0e-51	53.1
WP_105182707.1\|1502707_1505233_+\|tail	phage tail protein	Q94MY0	Haemophilus_virus	8.0e-246	65.5
WP_105182708.1\|1505244_1505847_+	hypothetical protein	Q94MX9	Haemophilus_virus	3.6e-88	86.0
WP_042593888.1\|1506105_1507290_+\|tail	tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.3e-102	48.2
WP_005655097.1\|1507293_1507800_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	5.4e-53	59.5
WP_005655095.1\|1507865_1508165_+\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.2e-12	42.9
WP_005633772.1\|1508164_1508311_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
WP_042593889.1\|1508639_1509077_+\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	9.1e-41	57.3
WP_075913145.1\|1509076_1510297_+	phage late control D family protein	R9QBT3	Mannheimia_phage	7.0e-123	57.7
WP_005672606.1\|1510314_1510704_-	hypothetical protein	NA	NA	NA	NA
WP_042593891.1\|1510763_1512524_-	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_042593892.1\|1512768_1513530_-	HNH endonuclease	NA	NA	NA	NA
WP_089503506.1\|1513534_1514185_-	transcriptional regulator	Q76H56	Enterobacteria_phage	5.8e-23	36.1
WP_042593894.1\|1514353_1514773_-	hypothetical protein	NA	NA	NA	NA
WP_005642278.1\|1514835_1515078_-	hypothetical protein	NA	NA	NA	NA
WP_042593895.1\|1515115_1515409_-	hypothetical protein	NA	NA	NA	NA
WP_042593896.1\|1515861_1516218_+	hypothetical protein	NA	NA	NA	NA
WP_042593897.1\|1516410_1516698_+	hypothetical protein	NA	NA	NA	NA
WP_042593898.1\|1516789_1517053_+	hypothetical protein	NA	NA	NA	NA
WP_042593899.1\|1517070_1517451_+	hypothetical protein	NA	NA	NA	NA
WP_005663359.1\|1517454_1517697_+	hypothetical protein	NA	NA	NA	NA
WP_005663355.1\|1517821_1518130_+	hypothetical protein	NA	NA	NA	NA
WP_042599665.1\|1518139_1520326_+	replication endonuclease	Q94N00	Haemophilus_virus	5.4e-166	42.7
WP_042593902.1\|1520380_1520902_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	4.3e-29	42.4
WP_005652916.1\|1520901_1521069_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_042593903.1\|1521049_1522381_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	9.3e-44	33.0
1537911:1537934	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1607452 : 1619533

Acinetobacter_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080003751.1\|1607452_1608457_-	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	9.1e-52	40.5
WP_005650594.1\|1608974_1609463_+	non-heme ferritin	NA	NA	NA	NA
WP_042599499.1\|1609478_1609976_+	non-heme ferritin	NA	NA	NA	NA
WP_042599515.1\|1610261_1611026_+	glycosyltransferase	A7IW34	Paramecium_bursaria_Chlorella_virus	1.2e-14	29.1
WP_105182719.1\|1611127_1612684_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	2.4e-22	32.1
WP_042599501.1\|1612695_1613277_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.8e-34	39.4
WP_048941027.1\|1613325_1613712_+	tautomerase family protein	NA	NA	NA	NA
WP_042599503.1\|1613764_1614766_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-48	36.8
WP_042599504.1\|1614796_1616227_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.1e-33	38.3
WP_042599505.1\|1616358_1616634_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
WP_105182720.1\|1616668_1619533_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.2e-150	37.7

DBSCAN-SWA_7

1627813 : 1634224

Haemophilus_phage(55.56%)

head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005650554.1\|1627813_1627990_-	DUF2213 domain-containing protein	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
WP_075913359.1\|1628130_1629441_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	5.3e-108	78.3
WP_105182721.1\|1629340_1630675_-	DUF1073 domain-containing protein	Q7Y5U6	Haemophilus_phage	4.7e-213	84.0
WP_011272619.1\|1632006_1632519_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
WP_005643377.1\|1632596_1632848_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
WP_042594017.1\|1632831_1633179_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-22	56.1
WP_042594016.1\|1633180_1633462_-	hypothetical protein	Q776X1	Haemophilus_phage	8.8e-29	70.0
WP_042594015.1\|1633373_1633709_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	9.8e-19	52.1
WP_042594014.1\|1633681_1634224_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0

DBSCAN-SWA_8

1637783 : 1659434

Mannheimia_phage(23.81%)