CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1 crisprs	DEDDh,DinG,cas3,WYL	1	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020012_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020012_1

245973-246086

Orphan

Consensus_repeat	Method
CTTGCTGGCGTTTTGCCTCTTCGGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020012_1

>merge|NZ_CP020012|1|245973-246086|CRISPRCasFinder
CTTGCTGGCGTTTTGCCTCTTCGGCTTTTTGACGTGCAACTCTTTCTCTTTCCGCCTCAGCTTGTTGACGGCGAGCTTCTGCTTGAGCTTGCTGGCGTTTTGCTTCTTCGGCTT

>NZ_CP020012|1|1|245973-246086|CRISPRCasFinder
CTTGCTGGCGTTTTGCCTCTTCGGCTT	TTTGACGTGCAACTCTTTCTCTTTCCGCCTCAGCTTGTTGACGGCGAGCTTCTGCTTGAG
CTTGCTGGCGTTTTGCTTCTTCGGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020012.1\|WP_005658168.1\|233611_234346_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP020012.1\|WP_005648665.1\|238952_239579_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP020012.1\|WP_005658522.1\|253195_253966_+\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_CP020012.1\|WP_005658170.1\|234389_235541_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP020012.1\|WP_005631374.1\|238352_238949_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP020012.1\|WP_005687983.1\|237104_238340_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP020012.1\|WP_005658517.1\|255783_256224_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_CP020012.1\|WP_005653794.1\|239578_240313_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|225424
NZ_CP020012.1\|WP_005648709.1\|256252_256777_-\|flavodoxin-FldA	unknown	unknown	gnl\|CDD\|236439
NZ_CP020012.1\|WP_005687981.1\|235920_236961_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP020012.1\|WP_005688077.1\|249675_250503_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868
NZ_CP020012.1\|WP_005687986.1\|241543_242887_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP020012.1\|WP_005653793.1\|240305_241541_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP020012.1\|WP_005688086.1\|256871_257654_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|182637
NZ_CP020012.1\|WP_005688079.1\|251769_252177_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP020012.1\|WP_005688084.1\|254326_255676_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP020012.1\|WP_005688082.1\|252625_253186_+\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
NZ_CP020012.1\|WP_005648696.1\|252394_252622_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|167284
NZ_CP020012.1\|WP_005688078.1\|250511_251648_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP020012.1\|WP_005687979.1\|235657_235918_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538

Protein	Function_ID	Function_description	E-value
NZ_CP020012.1\|WP_005658168.1\|233611_234346_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	1.64227e-127
NZ_CP020012.1\|WP_005648665.1\|238952_239579_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	2.8509e-138
NZ_CP020012.1\|WP_005658522.1\|253195_253966_+\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	1.48863e-131
NZ_CP020012.1\|WP_005658170.1\|234389_235541_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP020012.1\|WP_005631374.1\|238352_238949_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	2.76845e-124
NZ_CP020012.1\|WP_005687983.1\|237104_238340_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP020012.1\|WP_005658517.1\|255783_256224_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	1.1311e-69
NZ_CP020012.1\|WP_005653794.1\|239578_240313_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|225424	COG2869, NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion].	2.70676e-142
NZ_CP020012.1\|WP_005648709.1\|256252_256777_-\|flavodoxin-FldA	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	5.15398e-105
NZ_CP020012.1\|WP_005687981.1\|235920_236961_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	2.8625e-146
NZ_CP020012.1\|WP_005688077.1\|249675_250503_-\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	1.41407e-135
NZ_CP020012.1\|WP_005687986.1\|241543_242887_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP020012.1\|WP_005653793.1\|240305_241541_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP020012.1\|WP_005688086.1\|256871_257654_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|182637	PRK10673, PRK10673, esterase.	7.74395e-104
NZ_CP020012.1\|WP_005688079.1\|251769_252177_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.13015e-54
NZ_CP020012.1\|WP_005688084.1\|254326_255676_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP020012.1\|WP_005688082.1\|252625_253186_+\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	1.16068e-61
NZ_CP020012.1\|WP_005648696.1\|252394_252622_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|167284	PRK01833, tatA, Sec-independent protein translocase subunit TatA.	1.26778e-20
NZ_CP020012.1\|WP_005688078.1\|250511_251648_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP020012.1\|WP_005687979.1\|235657_235918_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	1.09644e-35

>NZ_CP020012.1|WP_005687986.1|241543_242887_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MITIKKGLDLPIAGKPAQVIHSGNAVNQVAILGEEYVGMRPSMKVREGDVVKKGQVLFEDKKNPGVIFTAPASGTITAINRGEKRVLQSVVINVEGDEKITFAKYSTEQLNTLSSEQVKQNLIESGLWTALRTRPFSKVPSIESEASSLFVNAMDTNPLAADPSVVLKEYSQDFTNGLTVLSRLFPSKPLHLCKAGDSNIPTTDLENLQIHDFTGVHPAGLVGTHIHFIDPVGIQKTVWHINYQDVIAVGKLFTTGELYSERVISLAGPQVKEPRLVRTIIGVNLSQLTQNELSAGKNRVISGSVLCGQIAKDSHDYLGRYALQVSVIAEGNEKEFFGWIMPQANKYSVTRTVLGHFSKKLFNFTTSENGGERAMVPIGSYERVMPLDILPTLLLRDLIVGDTDGAQELGCLELDEEDLALCSFVCPGKYEYGSILRQVLDKIEKEG
>NZ_CP020012.1|WP_005653793.1|240305_241541_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKNLFEKMEPAFLPGGKYSKLYPIFESIYTLLYTPGTVTHKNTHVRDALDSKRMMITVFLALFPAIFYGMYNVGNQAIPALNQLGNLDQLIANDWHYALASSLGLDLTANATWGSKMALGAIFFLPIYLVVFTVCTIWELLFSVVRGHEVNEGMFVSTILFALIVPPTLPLWQAALGITFGIIVAKEIFGGVGRNFMNPALAGRAFLFFAYPAQISGDTVWTAADGFSGATALSQWSQGGQGALQHTVTGAPITWMDAFVGNLPGSMGEVSTLAILIGGAVIVFTRIAAWRIIAGVMIGMIATSTLFNLIGSETNPMFSMPWHWHFVLGGFALGMVFMATDPVSASFTNTGKWWYGALIGVMAVLIRTVNPAYPEGMMLAILFANLFAPIFDYIVVQANIKRRRARTNG
>NZ_CP020012.1|WP_005653794.1|239578_240313_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAKFNKDSVGGTILVVLLLSLVCSIIVAGSAVMLKPAQEEQKLLDKQKNILNVAGLLQENTNVKETYAKFIEPRFVDLATGEYTQQADDSQQAIPADADKARIRSRSKTTEVYLVKDEQGQTQQVILPIYGTGLWSVMYGLVSVQPDGNTINGITYYQHGETPGLGGEIENPNWASLFKGKKLFDEQHQPAIRIVKGQAPQDEHSIDGLSGATLTGNGVQGTFNYWFSKDGFGPYLEKLHSGAN
>NZ_CP020012.1|WP_005648665.1|238952_239579_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MSGKTSYKDLLLAPIAKNNPIALQILGICSALAVTTKLETAFVMAIAVTLVTGLSNLFVSLIRNYIPNSIRIIVQLAIIASLVIVVDQILKAYAYGLSKQLSVFVGLIITNCIVMGRAEAFAMKSPPVESFVDGIGNGLGYGSMLIIVAFFRELIGSGKLFGMTIFETIQNGGWYQANGLFLLAPSAFFIIGFVIWGLRTWKPEQQEK
>NZ_CP020012.1|WP_005631374.1|238352_238949_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MEHYISLFVKAVFIENMALSFFLGMCTFLAVSKKVSTAFGLGIAVTFVLGIAVPVNQLIYANVLKENALIEGVDLSFLNFITFIGVIAGLVQILEMVLDKFMPSLYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGLGWMLAIVALAGLTEKMKYADIPAGLKGLGITFISVGLMALGFMSFSGIQL
>NZ_CP020012.1|WP_005687983.1|237104_238340_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MSDSVILALGIAAFTVIVLVLVAIILFAKSKLVDSGDITIGINDDPEKAITLPAGSKLLGALASKGIFVSSACGGGGSCGQCIVKVKNGGGEILPTELSHINKREAKEGYRLACQVNVKGNMEVELPEEIFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAEPHVVNYKDFDIPEEYHEDWDKYDLWRYVSKVDEHIIRAYSMASYPEEKGIIMLNVRIATPPPRQPDAPPGQMSSYIWSLKAGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKMSFWYGARSKREIFYQEDFDQLQAENPNFVWHVALSDALPEDNWTGYTGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP020012.1|WP_005687981.1|235920_236961_-|FAD:protein-FMN-transferase
MKKLISGIIAVAMALSLAACQKETKVISLSGKTMGTTYHVKYIDDGSIKATSEKTHEEIEAILKDVNAKMSTYKKDSELSRFNQNTQVNTPIEISADFAKVLAEAIRLNKVTEGALDVTVGPVVNLWGFGPEKRPEKQPTPEQLAERQAWVGIDKITLDTNKEKATLSKALPQVYVDLSSIAKGFGVDQVAEKLEQLNAQNYMVEIGGEIRAKGKNIEGKPWQIAIEKPTTTGERAVEAVIGLNNMGMASSGDYRIYFEENGKRFAHEIDPKTGYPIQHHLASITVLAPTSMTADGLSTGLFVLGEDKALEVAEKNNLAVYLIIRTDNGFVTKSSSAFKKLTETKE
>NZ_CP020012.1|WP_005687979.1|235657_235918_-|(Na+)-NQR-maturation-NqrM
MQTLFFTLIAFVAIILLMSIGFIIKKQSLKGSCGGLSTLGIDKACDCDKPCDTLQSKLDAGDEQAKAEYEQKFAKKDDDSQFYEVK
>NZ_CP020012.1|WP_005658170.1|234389_235541_-|tRNA-2-thiouridine(34)-synthase-MnmA
MLISNTYNQHFPQLTQEQLARNATKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDYCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLCADYIATGHYVRRTGDNENAKLLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLPAQPGNIRTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWVDREPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLDEVCLGGGIIAERI
>NZ_CP020012.1|WP_005658168.1|233611_234346_+|peptidoglycan-editing-factor-PgeF
MQAINPNWNVPKNIHAFTTTREGGVSLAPYLSFNLGDHVGDDKSAVKTNRTLLVEKFGLPQTPIFLTQTHSTQVIQLPYLGQNLEADAVYTNVPNQVCVVMTADCLPVLFTTTSGNEVAVAHAGWRGLCDGVLEETVKYFQAKSEDIIVWFGPAIGPKAFQVGIDVVEKFVAVDEKAKLAFQADVIEDGKYLGNLYQIATQRLNNLGITQIYGGNHCTFNEKEKFFSYRRDNQTGRMASVIWFE
>NZ_CP020012.1|WP_005688077.1|249675_250503_-|S-formylglutathione-hydrolase
MKLIEQHQIFGGSQQVWAHNAQTLQCEMKFAVYLPNNPENRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDAAYDLGQGAGFYLNATEQPWATNYQMYDYILNELPDLIEANFPTNGKRSIMGHSMGGHGALVLALRNRERYQSVSAFSPILSPSQVPWGEKAFTAYLGEDREKWQQYDASSLIQQGYKVQGIRIDQGLEDEFLPTQLRTEDFIETCRVASQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK
>NZ_CP020012.1|WP_005688078.1|250511_251648_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MEIKQINSIIKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKGLMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDQINEAFELMHEGKSIRTVIHY
>NZ_CP020012.1|WP_005688079.1|251769_252177_+|MerR-family-transcriptional-regulator
MTYTTAKAAEKIGISAYTLRFYDKEGLLPNIGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKAVNLPQIPETS
>NZ_CP020012.1|WP_005648696.1|252394_252622_+|twin-arginine-translocase-TatA/TatE-family-subunit
MFGLSPAQLIILLVVILLIFGTKKLRNAGSDLGAAVKGFKKAMKEDEKVKDAEFKSIDNETASAKKENIKEKEQA
>NZ_CP020012.1|WP_005688082.1|252625_253186_+|Sec-independent-protein-translocase-subunit-TatB
MFDIGFSELILLMVLGLVVLGPKRLPIAIRTVMDWVKTIRGLAANVQNELKQELKLQELQDSIKKAESLNLQALSPELSKTVEELKAQADKMKAELEDKAAQAGTTVEDQIKEIKNAAENAEKPQNAISVEEAAETLSEAEKTPTDLTALETHEKVELNTHLSSYYPPDDIEIAPASKSQSSKTKS
>NZ_CP020012.1|WP_005658522.1|253195_253966_+|twin-arginine-translocase-subunit-TatC
MSNVDESQPLITHLVELRNRLLRCVICVVLVFVALVYFSNDIYHFVAAPLTAVMPKGATMIATNIQTPFFTPIKLTAIVAIFISVPYLLYQIWAFIAPALYQHEKRMIYPLLFSSTILFYCGVAFAYYVVFPLVFSFFTQTAPEGVTIATDISSYLDFALALFLAFGVCFEVPIAIILLCWTGITTVKALSEKRPYIIVAAFFIGMLLTPPDVFSQTLLAIPMCLLFELGLLVARFYQPKDDESAVKNNDESEKTQ
>NZ_CP020012.1|WP_005688084.1|254326_255676_+|NADP-specific-glutamate-dehydrogenase
MSKVASLDAFLTKVAQRDGYQPEFLQAVREVFTSIWPFLEANPKYRSEALLERLVEPERAFQFRVAWTDDKGQVQVNRAFRVQFNSAIGPFKGGMRFHPSVNLSILKFLGFEQIFKNALTTLPMGGAKGGSDFDPKGKSDAEVMRFCQALMAELYRHVGADTDVPAGDIGVGGREVGYLAGYMKKLSNQSACVFTGRGLSFGGSLIRPEATGYGLIYFAQAMLAEKGDSFAGKVVSVSGSGNVAQYAIEKALSLGAKVVTCSDSSGYVYDPNGFTTEKLAALLEIKNVKRGRVKDYAELFGLQYFEGKRPWEVQVDIALPCATQNELELSDAQRLIKNGVKLVAEGANMPTTIEATEALLAADVLFGPGKAANAGGVATSGLEMAQSSQRLYWTAEEVDAQLHRIMLDIHANCKKYGTIEGQENINYVVGANVAGFVKVADAMLAQGVY
>NZ_CP020012.1|WP_005658517.1|255783_256224_-|ferric-iron-uptake-transcriptional-regulator
MSEENIKLLKKVGLKITEPRLTILALMQNHKNEHFSAEDVYKILLEQGCEIGLATVYRVLNQFDEAHIVIRHNFEGNKSVFELAPTEHHDHIICEDCGKVFEFTDNIIEQRQREISEKYGIKLKTHNVYLYGKCSDINHCDENNSK
>NZ_CP020012.1|WP_005648709.1|256252_256777_-|flavodoxin-FldA
MAIVGLFYGSDTGNTENIAKQIQKQLGSDLIDIRDIAKSSKEDIEAYDFLLFGIPTWYYGEAQADWDDFFPTLEEIDFTDKLVGIFGCGDQEDYADYFCDAIGTVRDIIEPHGAIVVGNWPTEGYNFEASKALLEDGTFIGLCIDEDRQPELTAERVEKWCKQIYDEMCLAELA
>NZ_CP020012.1|WP_005688086.1|256871_257654_-|alpha/beta-fold-hydrolase
MAKSLLNYQFHQVKQTINTPVLIFIHGLFGDMDNLGVIARAFSEHYNILRIDLRNHGHSFHSEKMNYQLMAEDVIAVIRHLNLSKVILIGHSMGGKTAMKITALCPELVEKLIVIDMSPLPYEGFGHKDVFNGLFAVKNSKPKNRQQAKPILKQEINDEDVVQFMLKSFDVNSTDCFRFNLTALFNNYANIMDWEKVRVFTPTLFIKGGNSSYIKIENSEKILEQFPNATAFTINGSGHWVHAEKPDFVIRAIKRFLNKN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020012_1	1.1\|246000\|60\|NZ_CP020012\|CRISPRCasFinder	246000-246059	60	NZ_CP020012.1	245268-245327	0	1.0
NZ_CP020012_1	1.1\|246000\|60\|NZ_CP020012\|CRISPRCasFinder	246000-246059	60	NZ_CP020012.1	245634-245693	0	1.0
NZ_CP020012_1	1.1\|246000\|60\|NZ_CP020012\|CRISPRCasFinder	246000-246059	60	NZ_CP020012.1	244902-244961	1	0.983

1. spacer 1.1|246000|60|NZ_CP020012|CRISPRCasFinder matches to position: 245268-245327, mismatch: 0, identity: 1.0

tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgcttgag	CRISPR spacer
tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgcttgag	Protospacer
************************************************************

2. spacer 1.1|246000|60|NZ_CP020012|CRISPRCasFinder matches to position: 245634-245693, mismatch: 0, identity: 1.0

tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgcttgag	CRISPR spacer
tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgcttgag	Protospacer
************************************************************

3. spacer 1.1|246000|60|NZ_CP020012|CRISPRCasFinder matches to position: 244902-244961, mismatch: 1, identity: 0.983

tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgcttgag	CRISPR spacer
tttgacgtgcaactctttctctttccgcctcagcttgttgacggcgagcttctgtttgag	Protospacer
******************************************************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80574 : 92670

Vibrio_phage(14.29%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005658393.1\|80574_82698_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.6e-260	62.8
WP_005687536.1\|82815_83676_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_005687538.1\|83836_85216_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	6.6e-53	29.7
WP_005652519.1\|85318_85828_+	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.2e-13	32.9
WP_005687540.1\|85882_86689_+	TatD family hydrolase	NA	NA	NA	NA
WP_005687542.1\|86732_87266_+	hypothetical protein	NA	NA	NA	NA
WP_005658381.1\|87324_87648_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.0e-16	43.4
WP_005658379.1\|87767_88763_-	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	6.4e-66	39.9
WP_074032767.1\|88775_89921_-	methionine biosynthesis PLP-dependent protein	A0A141ZJM2	Faustovirus	1.1e-13	26.8
WP_005653598.1\|90476_91313_+	ParA family protein	NA	NA	NA	NA
WP_005687545.1\|91314_92670_+	replicative DNA helicase	O80281	Escherichia_phage	3.4e-94	43.6

DBSCAN-SWA_2

459491 : 525468

Haemophilus_phage(12.5%)

protease,portal,terminase,holin,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005686779.1\|459491_460232_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_005659951.1\|460316_460661_+	YggL family protein	NA	NA	NA	NA
WP_005686780.1\|460866_461397_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_005686781.1\|461389_461671_+	chaperone NapD	NA	NA	NA	NA
WP_005686782.1\|461707_464191_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_032821617.1\|464275_465085_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_005686786.1\|465084_465948_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_005691774.1\|465944_466397_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_005649107.1\|466411_467014_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_005656340.1\|467173_467818_-	adenylate kinase	NA	NA	NA	NA
WP_032821618.1\|467902_469180_-	MFS transporter	NA	NA	NA	NA
WP_005656342.1\|469321_470338_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.2e-89	48.9
WP_105211005.1\|470510_471521_-	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA
WP_005686791.1\|471919_472642_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-27	34.5
WP_005686793.1\|472638_473376_+	ABC transporter permease	G3M9Y4	Bacillus_virus	2.2e-10	24.5
WP_005686795.1\|473398_474343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005686797.1\|474352_475000_+	thiaminase II	NA	NA	NA	NA
WP_005686800.1\|475093_475909_-	metal ABC transporter permease	NA	NA	NA	NA
WP_005686803.1\|475901_476750_-	metal ABC transporter permease	NA	NA	NA	NA
WP_005686805.1\|476753_477674_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-17	25.4
WP_005656358.1\|477673_478555_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005686807.1\|478919_479798_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_032821620.1\|480023_481196_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_005686810.1\|481296_481836_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_005686812.1\|481907_482819_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005686814.1\|482827_483934_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_005686816.1\|483943_485215_+\|tRNA	histidine--tRNA ligase	A0A1V0SLE3	Klosneuvirus	9.8e-27	26.2
WP_005686818.1\|485232_485847_+	YfgM family protein	NA	NA	NA	NA
WP_005626949.1\|485897_486092_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_005656373.1\|486091_486433_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005686821.1\|486472_488332_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	8.0e-110	42.5
WP_005686823.1\|488350_489037_-	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_005662651.1\|489087_489612_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_005649164.1\|489624_489948_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
WP_005691745.1\|490005_490422_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-53	80.6
WP_005649169.1\|490445_491660_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
WP_005654871.1\|491726_492179_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_005654873.1\|492231_492957_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_105182797.1\|493605_494091_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	4.0e-45	54.1
WP_105182798.1\|494083_494707_-	hypothetical protein	Q94MX9	Haemophilus_virus	4.2e-31	49.7
WP_105182799.1\|494781_495057_+	hypothetical protein	NA	NA	NA	NA
WP_105182800.1\|495034_495343_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_042611837.1\|497303_500954_-\|tail	phage tail protein	A0A0R6PIC9	Moraxella_phage	2.9e-140	37.2
WP_080291956.1\|500957_501677_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-34	40.2
WP_105182801.1\|501615_502323_-	C40 family peptidase	A0A1B1IV85	uncultured_Mediterranean_phage	9.9e-53	43.2
WP_038440725.1\|502324_502975_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	2.5e-34	39.6
WP_044365105.1\|503694_504228_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_042603541.1\|504289_504634_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	8.6e-18	41.3
WP_105182802.1\|504634_507013_-	hypothetical protein	H6WRV7	Salmonella_phage	1.8e-29	31.9
WP_105182803.1\|506954_507260_-\|tail	phage tail protein	NA	NA	NA	NA
WP_005668576.1\|507322_507706_-	hypothetical protein	NA	NA	NA	NA
WP_005668575.1\|507711_508212_-\|tail	tail fiber protein	O64327	Escherichia_phage	7.5e-39	56.1
WP_005668573.1\|508204_508609_-	hypothetical protein	K7PHM6	Enterobacterial_phage	7.5e-13	32.1
WP_005668571.1\|508605_509151_-	hypothetical protein	K7PKQ5	Enterobacteria_phage	4.2e-27	45.6
WP_105182804.1\|509150_509456_-	hypothetical protein	NA	NA	NA	NA
WP_005651203.1\|509436_509760_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	9.5e-11	42.7
WP_105182840.1\|509838_511866_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.7e-198	55.9
WP_105182805.1\|511816_513340_-\|portal	phage portal protein	S5MW34	Escherichia_phage	2.9e-158	57.9
WP_105182806.1\|513343_513562_-	hypothetical protein	NA	NA	NA	NA
WP_105182807.1\|513558_515679_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	1.4e-272	66.7
WP_105182808.1\|515681_516155_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.9e-39	53.0
WP_042600478.1\|516431_516821_-	hypothetical protein	NA	NA	NA	NA
WP_105182809.1\|516862_517144_-	hypothetical protein	Q776X1	Haemophilus_phage	2.1e-30	74.4
WP_105182810.1\|517055_517379_-	DUF2570 family protein	Q7Y5U9	Haemophilus_phage	7.0e-22	56.1
WP_006995063.1\|517371_517974_-	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	3.9e-58	55.4
WP_032826240.1\|517939_518299_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_005651339.1\|518538_519057_-	antitermination protein	G8C7V7	Escherichia_phage	3.4e-18	34.0
WP_042599558.1\|519057_519603_-	NinG recombination protein	D0UIK8	Aggregatibacter_phage	8.1e-63	71.9
WP_105182811.1\|519691_520111_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.1e-62	83.3
WP_146115314.1\|520147_520369_-	hypothetical protein	A0A0M3LPX7	Mannheimia_phage	1.3e-16	59.7
WP_105182813.1\|520365_521289_-	N-6 DNA methylase	A0A0M3LQ47	Mannheimia_phage	2.9e-97	58.5
WP_105182814.1\|521285_521867_-	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.1e-49	55.5
WP_105182815.1\|521863_522505_-	replication P	A0A1I9KFB0	Aeromonas_phage	8.2e-06	24.9
WP_105182816.1\|522489_523248_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	3.6e-61	68.8
WP_044365078.1\|523244_523919_-	antirepressor	D0UIL6	Aggregatibacter_phage	5.0e-62	55.6
WP_048942423.1\|523967_524408_-	hypothetical protein	A0A0U4B0E3	Pseudomonas_phage	1.3e-13	31.5
WP_005688828.1\|524462_524702_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	7.0e-11	49.2
WP_105182817.1\|524802_525468_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.7e-43	44.2

DBSCAN-SWA_3

529366 : 537418

Mannheimia_phage(28.57%)

integrase

attL 528926:528940|attR 540128:540142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
528926:528940	attL	NA	NA	NA	NA
WP_105182819.1\|529366_530287_+	recombinase	A0A0M3LNU3	Mannheimia_phage	2.8e-116	71.9
WP_105182820.1\|530261_530912_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	1.0e-83	70.2
WP_105182821.1\|530911_531346_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	7.5e-19	36.8
WP_105182822.1\|531407_532430_+	hypothetical protein	A0A0U4B0I3	Pseudomonas_phage	5.7e-33	57.3
WP_105182823.1\|532554_533451_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.1e-56	43.1
WP_005661510.1\|533447_533684_+	hypothetical protein	NA	NA	NA	NA
WP_105182824.1\|533680_534040_+	hypothetical protein	NA	NA	NA	NA
WP_105182825.1\|534047_535214_+	DNA (cytosine-5-)-methyltransferase	A0A2I7RFJ9	Vibrio_phage	8.0e-92	47.6
WP_048942568.1\|535210_535453_+	hypothetical protein	NA	NA	NA	NA
WP_048942569.1\|535449_535728_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_048942571.1\|535731_536043_+	hypothetical protein	NA	NA	NA	NA
WP_005641600.1\|536392_537418_+\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	7.4e-57	35.4
540128:540142	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1341675 : 1350193

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005686497.1\|1341675_1342659_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	33.2
WP_005686498.1\|1342661_1343654_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.7e-14	30.8
WP_005686499.1\|1343663_1344551_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_074032816.1\|1344565_1345537_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_074032815.1\|1345656_1347840_-	DNA helicase II	A7KV33	Bacillus_phage	1.8e-116	37.6
WP_005686506.1\|1348455_1349091_-	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	8.7e-16	30.3
WP_005647466.1\|1349091_1349517_-	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	7.8e-21	42.7
WP_005686508.1\|1349509_1350193_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7

DBSCAN-SWA_5

1538591 : 1545270

Sodalis_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005688173.1\|1538591_1538882_+	integration host factor subunit alpha	Q2A099	Sodalis_phage	1.5e-10	38.2
WP_005688175.1\|1538934_1539420_+	endopeptidase	A0A2H5BM69	Streptomyces_phage	2.3e-16	39.3
WP_012054395.1\|1539485_1540439_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA
WP_005688179.1\|1540497_1540953_+	hypothetical protein	I6X231	Vibriophage	3.5e-43	63.0
WP_005671438.1\|1540936_1541647_+	NAD-dependent deacylase	R9TG77	Vibrio_phage	3.2e-27	40.1
WP_005688182.1\|1541725_1542220_+	hypothetical protein	NA	NA	NA	NA
WP_005688183.1\|1542233_1542950_+	hypothetical protein	NA	NA	NA	NA
WP_005688186.1\|1543007_1544009_-	cytochrome c	Q9JMN3	Wolbachia_phage	5.4e-20	39.8
WP_005688188.1\|1544227_1544428_+	cell division protein FtsK	NA	NA	NA	NA
WP_005688189.1\|1544424_1545270_+	NAD-dependent deacetylase	A0A1C3S788	Escherichia_phage	7.0e-05	22.9

DBSCAN-SWA_6

1605419 : 1611613

Mannheimia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005687157.1\|1605419_1605686_+	hypothetical protein	A0A0N9STP5	Staphylococcus_phage	5.6e-09	49.2
WP_080281386.1\|1605671_1606070_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	5.3e-11	48.6
WP_005650500.1\|1606237_1606459_-	hypothetical protein	NA	NA	NA	NA
WP_005650502.1\|1606473_1606644_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_005687161.1\|1607119_1607599_-	hypothetical protein	NA	NA	NA	NA
WP_005687162.1\|1607600_1608530_-	hypothetical protein	NA	NA	NA	NA
WP_005687164.1\|1608597_1609254_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	5.5e-66	58.9
WP_005687166.1\|1609384_1609591_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.9e-17	67.7
WP_005687168.1\|1609611_1609908_+	hypothetical protein	Q7Y5W3	Haemophilus_phage	5.8e-31	68.4
WP_005687170.1\|1609955_1610567_+	hypothetical protein	D0UIL6	Aggregatibacter_phage	1.7e-40	45.3
WP_005653907.1\|1610723_1610906_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_005653910.1\|1610937_1611387_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_005687174.1\|1611430_1611613_-	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	1.2e-05	45.5

DBSCAN-SWA_7

1620083 : 1632086

Acinetobacter_phage(42.86%)