CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP027161	Klebsiella pneumoniae strain AR_0361 plasmid unnamed1, complete sequence	0 crisprs	RT,csa3,cas3	1
NZ_CP027157	Klebsiella pneumoniae strain AR_0361 plasmid unnamed6	0 crisprs	NA	0
NZ_CP027158	Klebsiella pneumoniae strain AR_0361 plasmid unnamed2, complete sequence	0 crisprs	NA	2
NZ_CP027164	Klebsiella pneumoniae strain AR_0361 plasmid unnamed4	0 crisprs	NA	0
NZ_CP027159	Klebsiella pneumoniae strain AR_0361 plasmid unnamed7	0 crisprs	NA	0
NZ_CP027162	Klebsiella pneumoniae strain AR_0361 plasmid unnamed3	0 crisprs	RT	1
NZ_CP027163	Klebsiella pneumoniae strain AR_0361 plasmid unnamed5	0 crisprs	NA	0
NZ_CP027160	Klebsiella pneumoniae strain AR_0361 chromosome, complete genome	2 crisprs	DEDDh,WYL,DinG,RT,cas3,csa3	8

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39101 : 148845

101

Escherichia_phage(15.79%)

transposase,integrase,protease

attL 30844:30858|attR 150624:150637

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
30844:30858	attL	NA	NA	NA	NA
WP_001515717.1\|39101_39842_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
30844:30858	attL	NA	NA	NA	NA
WP_004152065.1\|40985_41933_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|41959_42271_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011977741.1\|42290_43259_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_004197688.1\|43931_44189_-	hypothetical protein	NA	NA	NA	NA
WP_020444838.1\|44790_46245_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|47227_48505_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004178088.1\|48567_50565_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|51604_52812_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
50871:50885	attR	NA	NA	NA	NA
WP_004178091.1\|54240_54672_-	silver-binding protein SilE	NA	NA	NA	NA
50871:50885	attR	NA	NA	NA	NA
WP_003032875.1\|54922_56398_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|56390_57071_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|57260_58646_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|58674_59028_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|59141_60434_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|60444_63591_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|63677_64118_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|64244_66692_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|66732_66930_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|66963_67701_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|67989_68439_-	copper resistance protein	NA	NA	NA	NA
WP_004152083.1\|68672_70490_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|70489_71386_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|71425_71806_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|71810_72740_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|72794_73475_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|73471_74872_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|75088_75523_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|75754_75934_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|77676_78186_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|78235_78733_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|79064_79391_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004152093.1\|79387_80101_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|80109_80655_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|80730_81093_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|82989_83526_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|83558_83984_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|83996_85286_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|85333_87085_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|87102_87465_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|87514_87865_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|88222_88492_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|88479_89055_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|89085_89580_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|89623_89992_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|90025_90229_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|90277_90535_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|90610_90865_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|91040_91307_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|91294_91777_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|91988_93335_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|95177_96140_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_009483782.1\|96126_96876_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|97113_97311_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|97310_100106_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|100220_100790_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152118.1\|100824_101106_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004118208.1\|101349_101613_-	hypothetical protein	NA	NA	NA	NA
WP_004118209.1\|101627_101891_+\|transposase	transposase	NA	NA	NA	NA
WP_000019473.1\|103092_104073_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152692.1\|105281_106151_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152693.1\|106144_107155_-	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152694.1\|107163_107991_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152695.1\|107999_108863_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004153729.1\|108859_109687_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_001067855.1\|110542_111247_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|111397_112213_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_044503635.1\|112402_113071_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.3e-130	99.1
WP_004217321.1\|114374_115079_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000219391.1\|115200_116106_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|116102_117341_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|117340_117925_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|118417_119182_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|119408_119714_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|119724_120930_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|121085_121289_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|121416_122256_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|122249_122597_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|122760_123552_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|123557_123803_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|123959_124457_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|124601_125615_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|125817_126168_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|126293_126854_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_001138064.1\|126856_129823_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000656305.1\|129889_130267_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000412211.1\|130467_131127_-	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_016197752.1\|132104_132335_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_004118216.1\|132334_133723_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_000005560.1\|133715_134828_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118217.1\|134824_135460_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_004114613.1\|136016_136394_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.6e-57	91.3
WP_004152557.1\|136390_136738_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_004118832.1\|140560_142294_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004118225.1\|142301_143249_-	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004152278.1\|143293_144898_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118227.1\|144910_145831_-	ABC transporter permease	NA	NA	NA	NA
WP_004152279.1\|145830_146679_-	ABC transporter permease	NA	NA	NA	NA
WP_004118229.1\|146675_147269_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004118840.1\|147265_148393_-	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118231.1\|148677_148845_-\|integrase	integrase	NA	NA	NA	NA
150624:150637	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP027158

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2 : 8788

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152352.1\|2_434_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152351.1\|433_1705_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152350.1\|2105_3002_+	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152349.1\|3323_4529_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152348.1\|4525_5500_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152347.1\|5876_6209_+	hypothetical protein	NA	NA	NA	NA
WP_004227314.1\|6433_6649_+	hypothetical protein	NA	NA	NA	NA
WP_004152345.1\|6760_8788_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6

DBSCAN-SWA_2

13363 : 47247

Escherichia_phage(25.0%)

transposase,integrase

attL 45108:45121|attR 47570:47583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152342.1\|13363_14632_+\|transposase	ISL3-like element ISKpn25 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
WP_004152341.1\|14751_15225_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004152340.1\|16438_17221_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_004152339.1\|17220_17553_-	hypothetical protein	NA	NA	NA	NA
WP_004171440.1\|17559_17958_-	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|17983_18313_-	hypothetical protein	NA	NA	NA	NA
WP_004152336.1\|18340_18649_-	hypothetical protein	NA	NA	NA	NA
WP_004153649.1\|18694_18901_-	hypothetical protein	NA	NA	NA	NA
WP_072093212.1\|19135_19597_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|19553_19784_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|19780_20197_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004152334.1\|20270_20981_+	AAA family ATPase	NA	NA	NA	NA
WP_072093211.1\|21712_21838_+	mercury transporter	NA	NA	NA	NA
WP_001340589.1\|21873_22296_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|22347_24042_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|24059_24422_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|24418_24655_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001300294.1\|24690_25359_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000027057.1\|27269_28130_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|29873_30578_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152403.1\|30650_33548_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_004152402.1\|33636_34257_+	recombinase family protein	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
WP_004152400.1\|35422_35782_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
WP_004152398.1\|36285_37470_+\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
WP_004152397.1\|37746_39066_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|39315_40197_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152394.1\|40484_41264_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|41260_42286_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|42392_45422_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
45108:45121	attL	NA	NA	NA	NA
WP_004152391.1\|45531_47247_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004152391.1\|45531_47247_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
47570:47583	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP027162

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6028 : 15533

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|6028_6733_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032409716.1\|7315_7420_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|7949_8816_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000339857.1\|8992_9262_-	hypothetical protein	NA	NA	NA	NA
WP_000368714.1\|9676_10882_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000064119.1\|10881_11856_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1
WP_001754953.1\|11937_13209_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.4e-150	63.7
WP_000776034.1\|13208_13640_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_004178082.1\|14045_15533_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP027160

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027160_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027160_1

720594-720671

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027160_1

>merge|NZ_CP027160|1|720594-720671|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP027160|1|1|720594-720671|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027160.1\|WP_004152853.1\|726463_727186_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP027160.1\|WP_002895578.1\|721370_722660_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP027160.1\|WP_004142100.1\|725051_725807_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP027160.1\|WP_004229842.1\|708219_708366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027160.1\|WP_004151700.1\|723910_725068_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP027160.1\|WP_004151698.1\|713466_714423_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP027160.1\|WP_002895575.1\|720823_721300_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP027160.1\|WP_004153329.1\|712150_713470_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP027160.1\|WP_002895284.1\|709093_710017_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP027160.1\|WP_002895652.1\|727272_727485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027160.1\|WP_014342949.1\|716102_717041_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP027160.1\|WP_002895358.1\|714484_715210_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP027160.1\|WP_004147672.1\|718662_720045_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP027160.1\|WP_002895420.1\|717037_718564_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP027160.1\|WP_002895580.1\|722873_723914_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP027160.1\|WP_002895658.1\|730166_731264_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP027160.1\|WP_002895655.1\|727896_729918_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP027160.1\|WP_002895648.1\|725799_726522_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP027160.1\|WP_004151696.1\|710712_711996_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP027160.1\|WP_002895283.1\|708570_709077_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027160.1\|WP_004152853.1\|726463_727186_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP027160.1\|WP_002895578.1\|721370_722660_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP027160.1\|WP_004151700.1\|723910_725068_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP027160.1\|WP_004151698.1\|713466_714423_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NZ_CP027160.1\|WP_002895575.1\|720823_721300_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP027160.1\|WP_004153329.1\|712150_713470_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP027160.1\|WP_002895284.1\|709093_710017_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP027160.1\|WP_014342949.1\|716102_717041_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP027160.1\|WP_002895358.1\|714484_715210_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP027160.1\|WP_004147672.1\|718662_720045_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP027160.1\|WP_002895420.1\|717037_718564_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP027160.1\|WP_002895580.1\|722873_723914_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP027160.1\|WP_002895658.1\|730166_731264_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP027160.1\|WP_002895655.1\|727896_729918_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP027160.1\|WP_002895648.1\|725799_726522_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP027160.1\|WP_004151696.1\|710712_711996_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP027160.1\|WP_004142100.1\|725051_725807_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160

>NZ_CP027160.1|WP_004147672.1|718662_720045_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP027160.1|WP_002895420.1|717037_718564_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP027160.1|WP_014342949.1|716102_717041_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP027160.1|WP_002895358.1|714484_715210_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP027160.1|WP_004151698.1|713466_714423_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NZ_CP027160.1|WP_004153329.1|712150_713470_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP027160.1|WP_004151696.1|710712_711996_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP027160.1|WP_002895284.1|709093_710017_-|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP027160.1|WP_002895283.1|708570_709077_+|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQWSFR
>NZ_CP027160.1|WP_004229842.1|708219_708366_+|hypothetical-protein
MAGEMHEIAPTREGVNSNAVVDRWLSSASDSEHSGKYDEALSAFCTVR
>NZ_CP027160.1|WP_002895575.1|720823_721300_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP027160.1|WP_002895578.1|721370_722660_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP027160.1|WP_002895580.1|722873_723914_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP027160.1|WP_004151700.1|723910_725068_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP027160.1|WP_004142100.1|725051_725807_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP027160.1|WP_002895648.1|725799_726522_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP027160.1|WP_004152853.1|726463_727186_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP027160.1|WP_002895652.1|727272_727485_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP027160.1|WP_002895655.1|727896_729918_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP027160.1|WP_002895658.1|730166_731264_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIGVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

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Crispr_ID: NZ_CP027160_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027160_2

5094391-5094476

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027160_2

>merge|NZ_CP027160|2|5094391-5094476|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP027160|2|2|5094391-5094476|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027160.1\|WP_002888323.1\|5084949_5085327_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP027160.1\|WP_002888327.1\|5086147_5087137_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP027160.1\|WP_002888348.1\|5096731_5097391_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP027160.1\|WP_002888370.1\|5107423_5108269_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP027160.1\|WP_002888349.1\|5100497_5102855_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP027160.1\|WP_002888320.1\|5083361_5083841_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP027160.1\|WP_002888329.1\|5087142_5088429_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP027160.1\|WP_002888324.1\|5085329_5086151_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP027160.1\|WP_002888357.1\|5103863_5105366_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP027160.1\|WP_002888321.1\|5084096_5084945_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP027160.1\|WP_002888332.1\|5091075_5091903_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP027160.1\|WP_002888353.1\|5103030_5103726_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP027160.1\|WP_002888337.1\|5091935_5092634_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP027160.1\|WP_002888340.1\|5092623_5094249_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP027160.1\|WP_002888347.1\|5096117_5096657_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP027160.1\|WP_004219851.1\|5107267_5107438_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027160.1\|WP_004151368.1\|5097403_5100310_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP027160.1\|WP_002888345.1\|5094573_5095938_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP027160.1\|WP_002888368.1\|5105376_5107086_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP027160.1\|WP_004147026.1\|5088483_5090832_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
NZ_CP027160.1\|WP_002888323.1\|5084949_5085327_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP027160.1\|WP_002888327.1\|5086147_5087137_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP027160.1\|WP_002888348.1\|5096731_5097391_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP027160.1\|WP_002888349.1\|5100497_5102855_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP027160.1\|WP_002888320.1\|5083361_5083841_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP027160.1\|WP_002888329.1\|5087142_5088429_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP027160.1\|WP_002888324.1\|5085329_5086151_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP027160.1\|WP_002888357.1\|5103863_5105366_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP027160.1\|WP_002888321.1\|5084096_5084945_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP027160.1\|WP_002888332.1\|5091075_5091903_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP027160.1\|WP_002888353.1\|5103030_5103726_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP027160.1\|WP_002888337.1\|5091935_5092634_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP027160.1\|WP_002888340.1\|5092623_5094249_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP027160.1\|WP_002888347.1\|5096117_5096657_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP027160.1\|WP_002888370.1\|5107423_5108269_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP027160.1\|WP_004151368.1\|5097403_5100310_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP027160.1\|WP_002888345.1\|5094573_5095938_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP027160.1\|WP_002888368.1\|5105376_5107086_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP027160.1\|WP_004147026.1\|5088483_5090832_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP027160.1|WP_002888340.1|5092623_5094249_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP027160.1|WP_002888337.1|5091935_5092634_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP027160.1|WP_002888332.1|5091075_5091903_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP027160.1|WP_004147026.1|5088483_5090832_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP027160.1|WP_002888329.1|5087142_5088429_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP027160.1|WP_002888327.1|5086147_5087137_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP027160.1|WP_002888324.1|5085329_5086151_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP027160.1|WP_002888323.1|5084949_5085327_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP027160.1|WP_002888321.1|5084096_5084945_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP027160.1|WP_002888320.1|5083361_5083841_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP027160.1|WP_002888345.1|5094573_5095938_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP027160.1|WP_002888347.1|5096117_5096657_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP027160.1|WP_002888348.1|5096731_5097391_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP027160.1|WP_004151368.1|5097403_5100310_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP027160.1|WP_002888349.1|5100497_5102855_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP027160.1|WP_002888353.1|5103030_5103726_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP027160.1|WP_002888357.1|5103863_5105366_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP027160.1|WP_002888368.1|5105376_5107086_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP027160.1|WP_004219851.1|5107267_5107438_-|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP027160.1|WP_002888370.1|5107423_5108269_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151707 : 163361

Enterobacteria_phage(70.0%)

integrase

attL 139841:139855|attR 162898:162912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
139841:139855	attL	NA	NA	NA	NA
WP_002889890.1\|151707_154041_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
WP_002889897.1\|154052_154373_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889911.1\|154369_154597_-	hypothetical protein	NA	NA	NA	NA
WP_072028197.1\|154593_155145_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889915.1\|155147_155414_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_004903606.1\|155518_155656_+	hypothetical protein	NA	NA	NA	NA
WP_002889917.1\|155955_156693_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889919.1\|156689_156935_+	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889930.1\|156952_157519_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_020802988.1\|157591_157741_+	hypothetical protein	NA	NA	NA	NA
WP_004152979.1\|158087_158513_-	hypothetical protein	NA	NA	NA	NA
WP_004152029.1\|158512_159463_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_002889938.1\|159450_160641_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_002889940.1\|160993_162247_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_004144574.1\|162257_163361_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
162898:162912	attR	NA	NA	NA	NA

DBSCAN-SWA_2

814167 : 851503

Salmonella_phage(85.0%)

integrase,plate,head,tail,lysis,portal,capsid,terminase

attL 814075:814093|attR 851575:851593

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
814075:814093	attL	NA	NA	NA	NA
WP_014342959.1\|814167_815148_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
WP_004178082.1\|815635_817123_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|817221_818166_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|818177_819056_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|819201_819423_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|819455_819965_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|819972_820173_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|820136_820478_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|820545_820779_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|820778_821006_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|821002_821860_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|821856_824271_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|824424_824613_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217575.1\|824623_824857_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|824971_825649_+	hypothetical protein	NA	NA	NA	NA
WP_004199124.1\|825924_827667_+	AIPR family protein	NA	NA	NA	NA
WP_002895959.1\|827728_828754_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|828753_830520_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|830662_831496_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|831512_832571_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|832574_833225_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|833320_833785_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|833784_833988_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|833991_834207_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|834187_834697_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896163.1\|834701_835085_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|835081_835510_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896170.1\|835496_835643_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896172.1\|835605_836037_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|836029_836476_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_004199112.1\|836472_836982_-	hypothetical protein	NA	NA	NA	NA
WP_004226282.1\|836980_837145_+	hypothetical protein	NA	NA	NA	NA
WP_002896177.1\|837259_837832_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_002896179.1\|837828_838191_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896182.1\|838177_839086_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|839078_839678_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_004152882.1\|839679_842631_+	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_002896186.1\|842634_843366_+	hypothetical protein	NA	NA	NA	NA
WP_004232615.1\|843404_843566_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|843595_844672_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|844810_845983_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|845992_846508_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|846560_846860_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|846874_846994_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_014342962.1\|847220_849614_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896224.1\|849610_850096_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|850092_851193_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|851284_851503_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
851575:851593	attR	NA	NA	NA	NA

DBSCAN-SWA_3

885919 : 895383

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|885919_887035_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|887031_888972_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896516.1\|889048_889270_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|889595_889913_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|889943_892223_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|892343_892562_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_004141853.1\|892915_893635_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|893661_895383_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_4

1544304 : 1553718

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|1544304_1544925_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004151609.1\|1544917_1546183_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_004151610.1\|1546194_1547097_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|1547357_1548119_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|1548139_1549000_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|1549297_1549558_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|1549644_1550733_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|1550763_1552029_-	MFS transporter	NA	NA	NA	NA
WP_160463746.1\|1552083_1553718_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8

DBSCAN-SWA_5

2204172 : 2247272

Microcystis_virus(25.0%)

transposase,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910404.1\|2204172_2205429_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|2205699_2206311_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004217879.1\|2206310_2207159_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|2207342_2208290_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004152259.1\|2208414_2210094_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	7.9e-24	23.4
WP_002910436.1\|2210094_2211141_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|2211363_2211639_-	stress-induced protein YchH	NA	NA	NA	NA
WP_002910438.1\|2211911_2212496_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|2212613_2213705_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002910446.1\|2213787_2213997_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|2214198_2215113_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152260.1\|2215244_2216660_-	membrane protein	NA	NA	NA	NA
WP_004152261.1\|2216679_2217123_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_019404979.1\|2217125_2217668_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152910.1\|2217642_2218659_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910495.1\|2218688_2220452_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152262.1\|2220585_2223996_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_004198077.1\|2223979_2225137_-	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2225140_2225407_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_072093174.1\|2225704_2225890_-	hypothetical protein	NA	NA	NA	NA
WP_072093175.1\|2226150_2226285_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|2226510_2227491_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152632.1\|2227827_2228718_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_002910539.1\|2228893_2229787_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_038435084.1\|2229808_2229937_-	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|2229962_2230856_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_004217423.1\|2230877_2230994_-	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|2231039_2231933_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_004199323.1\|2231954_2232266_-	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2233775_2234282_-	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2234278_2234608_-	hypothetical protein	NA	NA	NA	NA
WP_004199326.1\|2234604_2234787_-	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|2234928_2235897_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_002910586.1\|2237502_2238012_-	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|2238001_2238154_-	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2238248_2238755_-	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|2238751_2239261_-	hypothetical protein	NA	NA	NA	NA
WP_004152319.1\|2239261_2240617_-	hypothetical protein	NA	NA	NA	NA
WP_004152317.1\|2243580_2245278_-	OmpA family protein	NA	NA	NA	NA
WP_004152316.1\|2245281_2245935_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002910645.1\|2245931_2247272_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_6

2554473 : 2561380

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151135.1\|2554473_2555952_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3
WP_002912634.1\|2555948_2556671_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_002912635.1\|2556989_2558351_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_004151134.1\|2558593_2559490_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912638.1\|2559732_2560506_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004175147.1\|2560516_2561380_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_7

3731179 : 3780022

uncultured_Caudovirales_phage(68.75%)

tRNA,head,protease,tail,portal,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002918465.1\|3731179_3731674_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918467.1\|3731677_3732316_-	stringent starvation protein A	NA	NA	NA	NA
WP_135801240.1\|3732285_3732570_-	hypothetical protein	NA	NA	NA	NA
WP_000829818.1\|3732627_3733020_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002918559.1\|3733035_3733464_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_004144945.1\|3733729_3734857_-	cell division protein ZapE	NA	NA	NA	NA
WP_002918565.1\|3735047_3735446_+	DUF1043 family protein	NA	NA	NA	NA
WP_002918566.1\|3735619_3736987_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918568.1\|3737074_3738133_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_002918570.1\|3738269_3739208_-	malate dehydrogenase	NA	NA	NA	NA
WP_002918625.1\|3739622_3740093_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918626.1\|3740468_3740732_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918627.1\|3740830_3741097_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918629.1\|3741147_3741423_-	hypothetical protein	NA	NA	NA	NA
WP_002918632.1\|3741502_3743470_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918639.1\|3743475_3744408_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918640.1\|3744415_3744619_-	AaeX family protein	NA	NA	NA	NA
WP_002918641.1\|3744750_3745680_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918642.1\|3745715_3747161_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_004150952.1\|3747249_3751047_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_002918644.1\|3751084_3752554_-	ribonuclease G	NA	NA	NA	NA
WP_002918646.1\|3752556_3753138_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918648.1\|3753145_3753634_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004149974.1\|3753633_3754626_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918653.1\|3754696_3755740_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_002918686.1\|3756045_3757986_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_002918687.1\|3758065_3758257_-	hypothetical protein	NA	NA	NA	NA
WP_002918688.1\|3758485_3759487_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918689.1\|3759486_3760095_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918732.1\|3760318_3760771_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918736.1\|3760793_3761261_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918738.1\|3761271_3762621_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918740.1\|3762731_3762974_+	YhdT family protein	NA	NA	NA	NA
WP_002918742.1\|3762963_3764415_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918745.1\|3764426_3765308_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_004144972.1\|3765665_3766631_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|3766655_3766952_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_004150954.1\|3767105_3767297_-	hypothetical protein	NA	NA	NA	NA
WP_004150955.1\|3767299_3768961_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_000113647.1\|3768944_3769301_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150957.1\|3769431_3769584_-	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_004150959.1\|3769576_3770020_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_001547824.1\|3770019_3770319_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150961.1\|3770315_3770651_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_004150962.1\|3770647_3771889_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_001547826.1\|3771890_3772451_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_001549743.1\|3772502_3773669_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_004150963.1\|3773932_3774445_+	hypothetical protein	NA	NA	NA	NA
WP_004150964.1\|3774493_3774829_-	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|3775171_3777307_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_001549749.1\|3777306_3777672_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|3777668_3778037_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_004218267.1\|3778135_3778264_+	hypothetical protein	NA	NA	NA	NA
WP_001549752.1\|3778340_3778529_-	hypothetical protein	NA	NA	NA	NA
WP_157263200.1\|3778521_3778740_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-34	94.4
WP_004150969.1\|3779242_3780022_-	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5

DBSCAN-SWA_8

4872056 : 4877881

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152202.1\|4872056_4872623_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4872640_4872886_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152204.1\|4872882_4873620_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_000556592.1\|4874180_4874447_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_072093163.1\|4874449_4874992_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152205.1\|4874988_4875216_+	hypothetical protein	NA	NA	NA	NA
WP_004152206.1\|4875212_4875533_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152207.1\|4875547_4877881_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP027158

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP027162

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP027160

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection