CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027171	Pseudomonas aeruginosa strain AR_0354 chromosome, complete genome	3 crisprs	WYL,RT,csa3,DinG,DEDDh,PD-DExK,cas3	0	3	5	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027171_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027171_1

3298932-3299094

Orphan

Consensus_repeat	Method
GAGTTCGGATGCCGAACTCAG	CRT

3 spacers

The CRISPR arrays of NZ_CP027171_1

>merge|NZ_CP027171|1|3298932-3299094|CRT
GAGTTCGGATGCCGAACTCTGCCCGATCTACCTCATTCAACCCCGAGTTCGGATGCCGAACTCAGTGAAATCAGCGGCAAGCAATGCGCTTTACCGCTGAGTTCGGATGCCGAACCCAGACAGAATCCGCCGAGTACGCCCTTGGTTCGGATGCCGAACTCAT

>NZ_CP027171|1|1|3298932-3299094|CRT
GAGTTCGGATGCCGAACTCTG	CCCGATCTACCTCATTCAACCCC
GAGTTCGGATGCCGAACTCAG	TGAAATCAGCGGCAAGCAATGCGCTTTACCGCT
GAGTTCGGATGCCGAACCCAG	ACAGAATCCGCCGAGTACGCCCT
TGGTTCGGATGCCGAACTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027171.1\|WP_058152193.1\|3307727_3309617_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NZ_CP027171.1\|WP_023102567.1\|3300907_3301636_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP027171.1\|WP_023124916.1\|3293538_3294561_+\|nucleoid-associated-protein-YejK	unknown	unknown	gnl\|CDD\|178993
NZ_CP027171.1\|WP_019484534.1\|3295734_3297468_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP027171.1\|WP_003117034.1\|3294557_3295448_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_CP027171.1\|WP_034031120.1\|3303109_3303598_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
NZ_CP027171.1\|WP_123796553.1\|3292815_3293313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_024007695.1\|3301641_3302190_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NZ_CP027171.1\|WP_057383626.1\|3304935_3306855_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NZ_CP027171.1\|WP_003141385.1\|3292041_3292569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003103845.1\|3291866_3292052_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_071535245.1\|3304097_3304295_+\|CrpP-family-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_023102570.1\|3304311_3304608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_019396765.1\|3300553_3300751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003117035.1\|3295468_3295738_+\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NZ_CP027171.1\|WP_004352844.1\|3297495_3298263_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP027171.1\|WP_024007696.1\|3302237_3303080_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP027171.1\|WP_019486081.1\|3292565_3292823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_019486083.1\|3293305_3293539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_057383625.1\|3306863_3307616_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027171.1\|WP_058152193.1\|3307727_3309617_+\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.00108775
NZ_CP027171.1\|WP_024007696.1\|3302237_3303080_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.73941e-37
NZ_CP027171.1\|WP_023102567.1\|3300907_3301636_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	8.20946e-118
NZ_CP027171.1\|WP_023124916.1\|3293538_3294561_+\|nucleoid-associated-protein-YejK	gnl\|CDD\|178993	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated.	0
NZ_CP027171.1\|WP_019484534.1\|3295734_3297468_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	6.97353e-157
NZ_CP027171.1\|WP_003117034.1\|3294557_3295448_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	5.93548e-48
NZ_CP027171.1\|WP_003117035.1\|3295468_3295738_+\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	3.59083e-07
NZ_CP027171.1\|WP_034031120.1\|3303109_3303598_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	2.28113e-76
NZ_CP027171.1\|WP_004352844.1\|3297495_3298263_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	8.27663e-46
NZ_CP027171.1\|WP_024007695.1\|3301641_3302190_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	1.55223e-64
NZ_CP027171.1\|WP_057383626.1\|3304935_3306855_+\|type-I-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	2.19996e-162

>NZ_CP027171.1|WP_004352844.1|3297495_3298263_+|DUF2857-domain-containing-protein
MSKSLINEAVLTQVLNHLRNGQLRRCAEMGLRPEILAQLQQPAVMSILTNTPVSWVDVRVNIDVMEKILATAERSQQEELQIERALKLGATTTMIQSFFGLSPEDTAIKRLIMEIHPRRGRWRQLDEQIERQIWFRWEHLMQENQVRLEDSMELLDIAMILTEEINAGIEQDSPEFISLAIVWSLIQSWLKDGLYPSGKSSQSQAGLQKSQSTLYLASVSSHLPHSAPSATTQVNAETERQQLLNLVQSEGDTAP
>NZ_CP027171.1|WP_019484534.1|3295734_3297468_+|ParB-N-terminal-domain-containing-protein
MSMAKINPQDLKDRLLAPGFTAPPVLEQLSDPISDTPMVLTLDQVLPWHDNPRTTRNPKYDELKESIRHRGLDTPPPVTRRPGEDKYRIRNGGNTRLEILNELYKETGDERYFRFNCLFRPWDKQRGEIIALTGHLAENDLKGDLKFIERAVGIQKAKAWYEEEKGEPVGIRELSRKLTDDGYPVSPSHISRMLDAVEILLPAIPVMLYSGLGKPQIEKLLSLRKSASSCWTRLYAGEGIDFEMMFQDTLAIFDSSPDEFIFERFQDELIDQMKRPLGLRYDQILLEITNGQQEQRRGTLIDLPAPTAPPEIPPVGQESPAASTTGQAQSQSPAAGLQTSKINSLPGNPSTPPTPPLPVQQQQLTDEERAELLAGHIVSPVSTKIQQTRQRLAALEGEHLPVFEETALQAIPVQVGGLHPITDLWYIERSIDTPEILRQHIADLAEEIALHVGAPGEIVRIQGGVGYTYREPNEDPEITDSALHLMTLLQALSGQVQVVLNSHDQQTCRDALGEFQFSAGLAQLLLGQPTTGDQPSSQAGRLNDEALVKLFRIIRLARRLVDLELPPAASEQAATDQ
>NZ_CP027171.1|WP_003117035.1|3295468_3295738_+|Arc-family-DNA-binding-protein
MKNVTSIDRKHAEDKFVVRMPQGLRDQLKQKAADNHRSANSEIVYRLERSNALEEELARANRMVDELFAKNQRLQAELAAANTPQVAEA
>NZ_CP027171.1|WP_003117034.1|3294557_3295448_+|DNA-adenine-methylase
MKGVRRPILRYHGGKWKLAPWIIQHLAPHHTYVEPFGGAASVLLRKARSYAEIYNDLDGDVVNLFRVARDHGEELRQALALTPFAREEFEASYAETSDPLERARRMVIRSLQGFGTAAASGERTGFRSTSTRSGTGPALDWRNYPDTLTAITERLQGVVIENRDALALMEYHDRPNTLHYVDPPYVHSTRSTKVRHNATGKSYRYELDDNQHKELAAFLKRLRGMVVLSGYPCPLYDELYITWHRVDRHAYADGSRERIECLWLNSAALEGLAQLDFFQASNASPSPSFQTTAAHY
>NZ_CP027171.1|WP_023124916.1|3293538_3294561_+|nucleoid-associated-protein-YejK
MPIKHAIVHLIEKKPDGTPAVLHARDAELGDSQATENLLADLNESYNAKNKAWGFFYGESGAYPFSGWLGEYLEGGRDFVGFSREAVEHLQKLMEESNLSTGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNKSLEVTPSRHLDLGQLHLAARINISEWRNNKQSMQYISFIKGKGGKKVTDYFRDFIGCQEGIDSPGETRALLKAFSDFVESEGMAEQQAREKTETLVDYATSQARIGEPMTLDALSELMDDQQPRAFYDYIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFEAHLLGSRIEYDEERDTLSISSLPTQLRDQLKRRKAEQESTS
>NZ_CP027171.1|WP_019486083.1|3293305_3293539_+|hypothetical-protein
MRSFLRGARESVRRLVAFAQAEGWSVDRSAGGHLKLSKIGCASIFISSTPSDARGELNARALLRRAHRQRSLNQESF
>NZ_CP027171.1|WP_123796553.1|3292815_3293313_+|hypothetical-protein
MADVTAYRPLEHFQKGELMLELKLREGPSWICLNCGYHLDGSGAQPCPDCGKSRYWTRGWSVGRGHRFSAAREEWESRLRTRSRAPVASTAPVTTDDVCTQLRTEVRMLRSAHDDLACSRQSDRRSLQALVKRLLHAASTDSLPRSLAEMETWLQLNSSEETTDA
>NZ_CP027171.1|WP_019486081.1|3292565_3292823_+|hypothetical-protein
MKASQTYQCIVKFDGAGFWTNTIKKQRATCTWSDKVAASRLAERLFGEDNAYITRMPAQAGDHEKRIESRWELSCRNPKEVACDG
>NZ_CP027171.1|WP_003141385.1|3292041_3292569_+|hypothetical-protein
MNTEARFPSIHASAAFTDSAVVHANHVGVNPIELDALSQVISRLSRDESTVAPSSMERELRELEELGYIEISTTQAGTLVVTTRAPGQLLSAYFWSVWIPRHLFSCSLKVSLVPHLCCGTQDSQHLTAVFRIAGSKDAAREFLHQLANNYPGHEPELPELVAVQVGDALSKEAES
>NZ_CP027171.1|WP_003103845.1|3291866_3292052_+|hypothetical-protein
MNTSQHLVTHQCMNCGQHHPYHLVRQILPAENTPEGEAEVLVCPCCGSYDVHQLEAVFDEH
>NZ_CP027171.1|WP_019396765.1|3300553_3300751_+|hypothetical-protein
MCDSILYAPMDELEFERLLGLATLFNDNDEWPIDFTELQELSELLGKLKSCVDVAIDNAPEAAKS
>NZ_CP027171.1|WP_023102567.1|3300907_3301636_+|TIGR03761-family-integrating-conjugative-element-protein
MAETHRLQIGSLRSDVALTLHTYHAARIWTGRQKSDAKHSILGLSGFCAYVNRMHRGAAQDDPYSDWWLVQIEEKVENCQAALKAIDQRLDDVMAKLPATLDISENLSVTPVKVPLFISNPLGFKAVYLLTNYDELARRILLAQHVGLVGRRDMEVWLDEGASVLRSLFGLAQSYQFTGATRDDFAANNARAEAARKMYEKFGEIPQDILEGTRRSNFAPPITRGRSDGDADDDADRVELED
>NZ_CP027171.1|WP_024007695.1|3301641_3302190_+|DUF3158-family-protein
MRQLDKDQQGALQQSAFRPLQQTAFQAMQHSASLKGLLKPFKGKGELAQLAEQCEALEQGLLELAQGLLAQVRRTPFTLLPARLIEQRTSARTTFLRWQHIATRRMGVGVWAEMLRQDKTPEYLLQDLYEMELQRITLNMQISLIHSIGKQAAECAEKMGQAEAEFMGRLQQSQNRPGSVGM
>NZ_CP027171.1|WP_024007696.1|3302237_3303080_+|Rha-family-transcriptional-regulator
MSNISNKAVSNTNTQPSTEVSVEITGGKPTTTSLDVAKHFGKQHKDVLRAIRNLDCSTEFHERNFAPTIQTVLGPKGAKREEPAFRMTRDGFTFLCMGFTGKEAARWKEAYINAFNKMEQALIEQPDILSHNHLLQFAIKTLDLMRDHTLGEPARPRTEQVVCNYLAVESLDAANPEQIKQALNFLQGQIIGEGVAAKSLPSVAGSSIAKDLLYGLLRSAHDAELLFNSLYDSGVEKLASEVFKEHMANTLAATSRQTRELLGYVASRATRSPFKPRSTH
>NZ_CP027171.1|WP_034031120.1|3303109_3303598_+|single-stranded-DNA-binding-protein
MATPVFWEGNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELFTKGMRVKVEGRAIMDRWPDKESGEEVQALKVEASRISILPHRLAEVTLLPSTNGQSTQHQQTRQVPQQPAQQDAHSQQDYDSAFDDDIPM
>NZ_CP027171.1|WP_071535245.1|3304097_3304295_+|CrpP-family-protein
MSKKATDTDKLDRRHFNDPHRTVRALGAEAARKGLRVFDCPYSHPAMRASWLKGFAQEQQQQLDF
>NZ_CP027171.1|WP_023102570.1|3304311_3304608_-|hypothetical-protein
MAASLIKALWARLSGKKPAQGTRYFGGQFKDGQSVVLYDREGEQVIASIGFDVSGRGKPHPGLIEYVMTATGSAVPVLDLPGQQEEIPSVRSRRDESR
>NZ_CP027171.1|WP_057383626.1|3304935_3306855_+|type-I-DNA-topoisomerase
MHLVIIEAPGKLKKLRSLLPSIRPDVTWQVEATAGHIRDLPVHGQNPQMLTVGVGQDFKPHYQILSGKEKTVARLQELRQKAVEVYVASDPDREGESIGWHILQAAGIKNYKRVAFKEITKSCISAELSSPRRLDLPKVASQECRRVIDRLVGYLVTPELRRVMGRPTTAGRVQSVAVYLVVLREREIRAFTPIKHFGVELAFVSPSDGRTWKAEWDPVPTFASKEFPYVQDRQLAELVGAIRNVIVGTCIDGEETDTPPAPFISSSLQMAAGNALKWSPDKTMKIAQRLYEQGLITYHRTDNPNISKDSMPDIRAVAKALGLECVEQQRMFKADQDAQEGHPAITPTDWMAATAGETADEQALYQLIRVRALASQIEAAVYAVRTITLLGVGPDKKPLRFGAKGKLLNVPGWRKLLQGDDAEEQKNETPSSPIPALEPGQILKVYSGEVLEKKTTPPKRFTDASLVGEMKRRGIGRPSSYASIVKNIIDKGQVQMKGRSLIPGELGEATIALLEHNFSFLSLDFTRNLEVALDRIANSEDTYMNVVQQFYQLLQSELQTLRALPSAQDEPRASSTANVSSAPTSDFLCGKCGLPLVRRKKAGKGGFDFWGCSGYRSTGCKVSYPTKDGQPDFDNPRGL
>NZ_CP027171.1|WP_057383625.1|3306863_3307616_+|hypothetical-protein
MNMQTSTDRNLNFDFVRRQVEQPPAWASEVLLSWEEAYPQEKHAFLQSHYWTETGSINVFRVVGTDRKDYRGRSWLDFLTGGKRMQRNLQALLDNPSYYLQPTERRPAIHYNTLDGLNFYVGSDGNHRTCIARFFLAEQQKSQLHDVTLNHYQVNDAFYRLYGQLRQQVLLQGLPVQVHPERVQLRREDTAGWKMDTYQTTLNWLNLKTQEEISLNEAQAREQLIDLIRRKPSGEQPRGWKARLKCLISG
>NZ_CP027171.1|WP_058152193.1|3307727_3309617_+|hypothetical-protein
MVPLDNASPSGPLQDPSLARYSERQLAVAHTWATHFSLAGTARTKFIRHYLRSTSTTRCWCITVTADNGVRYTIMRAGPLLQVFDGQLIGAWECKPAHRIPASTPSPAGALKLLQRLEKFDDAVPVLSSYTQRAQGLATQLARQDLGSFPKSQYPSVSHNRYYSPRRRFYLKQIGAVLRTFRQVLDQDLLFAIRSVRCLSPQLYNWLAQGDQVRRLQMLKAQPVLTPLLVDCEEEVWPHTTTNDNGESIRHFLPCPFSLLDSERPQATTMPCDWYLDMGRILGQVADEGISVINFFAWLFQAPRASIRFLSHVSPGRAGGALFHRKREGRHSGWHALLLAASLGNRRPITRAQWTAFYAAYNAIPWQIHNAKPDYNRLFNGCPSDWQDPAWLAITARLSDIKEFYTALDQGNSQVVRQARSALKAYLGHCTYRQAGNLVDDYHQVQRELRATVQSSLPDLVDTDEYTTWEGMLPVGLIDCPNGLQIVELRCPADLYAEHIALAHCIDSYDQAAYRGDCRLLSVREAGRPLASAELELRREHGEPLGRPWNPQHLSTVQLREFDNAPVPADSPAGQAYRWFMERIRSGAIATNLNWPDMTVHMTRFADGRWKAGLAEATAKWLLTRLENR

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Crispr_ID: NZ_CP027171_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027171_2

4722505-4722652

Orphan

Consensus_repeat	Method
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027171_2

>merge|NZ_CP027171|2|4722505-4722652|CRISPRCasFinder
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAGAGAACAAAGGGGACAGATTTATTTTCCCTACTCTAGTTTTCTAAGCAAGGAGGCTCCAGCGCAGCCGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG

>NZ_CP027171|2|1|4722505-4722652|CRISPRCasFinder
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG	AGAACAAAGGGGACAGATTTATTTTCCCTACTCTAGTTTTCTAAGCAA
GGAGGCTCCAGCGCAGCCGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027171.1\|WP_003083569.1\|4727834_4728188_+\|DUF4810-domain-containing-protein	unknown	unknown	gnl\|CDD\|226710
NZ_CP027171.1\|WP_086937300.1\|4721210_4722373_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP027171.1\|WP_003097347.1\|4702476_4702704_+\|DUF1161-domain-containing-protein	unknown	unknown	gnl\|CDD\|369019
NZ_CP027171.1\|WP_123788640.1\|4716414_4716816_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003083555.1\|4725248_4726622_+\|T3SS-effector-bifunctional-cytotoxin-exoenzyme-T	unknown	unknown	gnl\|CDD\|227872
NZ_CP027171.1\|WP_014603455.1\|4703001_4704690_+\|two-partner-secretion-system-transporter-TpsB2	unknown	unknown	gnl\|CDD\|225387
NZ_CP027171.1\|WP_003097343.1\|4701089_4701977_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176171
NZ_CP027171.1\|WP_014603458.1\|4729529_4731191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_034024234.1\|4704802_4716418_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP027171.1\|WP_100814894.1\|4717706_4720613_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377410
NZ_CP027171.1\|WP_003097345.1\|4702077_4702293_+\|dodecin-family-protein	unknown	unknown	gnl\|CDD\|225896
NZ_CP027171.1\|WP_003083553.1\|4723676_4724930_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|225715
NZ_CP027171.1\|WP_003083584.1\|4732002_4732140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003083559.1\|4727117_4727804_+\|CsgG/HfaB-family-protein	unknown	unknown	gnl\|CDD\|224379
NZ_CP027171.1\|WP_003083582.1\|4731800_4731941_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_071533944.1\|4717270_4717486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP027171.1\|WP_003083575.1\|4728864_4729248_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP027171.1\|WP_003097340.1\|4699777_4700986_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP027171.1\|WP_003083536.1\|4723016_4723412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003083573.1\|4728184_4728850_+\|DUF799-domain-containing-protein	unknown	unknown	gnl\|CDD\|368539

Protein	Function_ID	Function_description	E-value
NZ_CP027171.1\|WP_003083569.1\|4727834_4728188_+\|DUF4810-domain-containing-protein	gnl\|CDD\|226710	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown].	2.32647e-62
NZ_CP027171.1\|WP_086937300.1\|4721210_4722373_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.44652e-87
NZ_CP027171.1\|WP_003097347.1\|4702476_4702704_+\|DUF1161-domain-containing-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	2.11491e-24
NZ_CP027171.1\|WP_003083555.1\|4725248_4726622_+\|T3SS-effector-bifunctional-cytotoxin-exoenzyme-T	gnl\|CDD\|227872	COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal transduction mechanisms].	1.87747e-56
NZ_CP027171.1\|WP_014603455.1\|4703001_4704690_+\|two-partner-secretion-system-transporter-TpsB2	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	9.26606e-164
NZ_CP027171.1\|WP_003083559.1\|4727117_4727804_+\|CsgG/HfaB-family-protein	gnl\|CDD\|224379	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane].	3.72394e-88
NZ_CP027171.1\|WP_034024234.1\|4704802_4716418_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	8.68186e-41
NZ_CP027171.1\|WP_100814894.1\|4717706_4720613_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|377410	pfam04830, DUF637, Possible hemagglutinin (DUF637). This family represents a conserved region found in a bacterial protein which may be a hemagglutinin or hemolysin.	7.24788e-40
NZ_CP027171.1\|WP_003097345.1\|4702077_4702293_+\|dodecin-family-protein	gnl\|CDD\|225896	COG3360, COG3360, Uncharacterized conserved protein [Function unknown].	6.39458e-35
NZ_CP027171.1\|WP_003083553.1\|4723676_4724930_-\|MgtC/SapB-family-protein	gnl\|CDD\|225715	COG3174, COG3174, Predicted membrane protein [Function unknown].	7.51308e-88
NZ_CP027171.1\|WP_071533944.1\|4717270_4717486_+\|hypothetical-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	2.45371e-05
NZ_CP027171.1\|WP_003083575.1\|4728864_4729248_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.28572e-09
NZ_CP027171.1\|WP_003097340.1\|4699777_4700986_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP027171.1\|WP_003097343.1\|4701089_4701977_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176171	cd08482, PBP2_TrpI, The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold. TrpI and indoleglycerol phosphate (InGP), are required to activate transcription of the trpBA, the genes for tryptophan synthase. The trpBA is induced by the InGp substrate, rather than by tryptophan, but the exact mechanism of the activation event is not known. This substrate-binding domain of TrpI shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.34631e-98
NZ_CP027171.1\|WP_003083573.1\|4728184_4728850_+\|DUF799-domain-containing-protein	gnl\|CDD\|368539	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.	2.9667e-121

>NZ_CP027171.1|WP_086937300.1|4721210_4722373_-|IS3-family-transposase
MSKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLEAERQGVTPKSKALTPEQQKIQELEARINRLEREKAIFKKGYRSLDVGRTRSYALIDQLSEQESVEVVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVLDLHTRRVIGWAFSAKPDAELVIKALDMAYEQRGKPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNSPMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG
>NZ_CP027171.1|WP_100814894.1|4717706_4720613_+|ParB-N-terminal-domain-containing-protein
MPVSDSPHKDQLHLQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPNGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAVEDRQGQTRWNTSRLQSVTQLGAEVSAGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAGGDLAINAGQDLRLIASQASAGDEAYLVAGDKLELLAANDSNYYLYDKKKKGDFGRKETRRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDLHQESHEKSKGDLAWQSSKGKGQTDETVRQSQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVHDSWKYSNSGLGAAPSLAIAIVAAAYLGPVYGAMASNLATGTINNGGDFGKGLKFATSSNALKGYAVAGATAYLVSPQLDEMFGVSTDNVNKVTKGFDLSTMSGLGGFATYSIIQGLSQAGIQTAAFGGSFADNLGDAMAGQATNLAMAAGFNLIGDWADGKFDSGSPQKIMAHALMGGLLAQATGGDFKTGAMAAGANEALVNVLSNMAGGEEKLELMASQLTGLLAATVVDGDVAKGAEIAKNATAYNQQVHRDALSRLKRGMSALHEQGKYADLEPEIVLAELQKIASGEAKSVSDLNPKVVQFLNSEFSPASLRETLFEPESWEEYAAIAVDVLYPTPGGKAAAIEKAGGKLSKEALEALEKKFSESTKQELKSKLLQEDPRNLIPTQTKAEMSGSQIKRIVKSIKENGFDQEKPVDVWRNPKTGRLEIQDGHHRTEAAKKAGLDKIPVSIWE
>NZ_CP027171.1|WP_071533944.1|4717270_4717486_+|hypothetical-protein
MAWLDEGLSRVNQIRRGAIECPDWSRDSWGVELRNGMARIYSLYDEDCSAAIALDDFERALLGWKRFIQAD
>NZ_CP027171.1|WP_123788640.1|4716414_4716816_+|hypothetical-protein
MIVLGGYLIAPGAKRTQFPVMSDPDEEEVLEALSKLRHSSGVLVLRVKPEPEIGAYEVALHAENGRFIVMLSQHAEDGEHEVFTLRGAGEGNGFTYILGEAYPMAAVTENFGLICNCFKKFLLERKVSSDVWV
>NZ_CP027171.1|WP_034024234.1|4704802_4716418_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MDIRSPLNQCIALSLAGILFLNPIVAAAAGLALDKAAGGNTGLGQAGNGVPIVNIATPNGAGLSNNHFRDYNVGANGLILNNATGKTQGTQLGGIILGNPNLKGQAAQVILNQVTGGNRSTLAGYTEVAGQSARVIVANPHGITCQGCGFINTPRATLTTGKPIMDGQRLERFQVDGGDIVVEGAELNVGNLEQFDLITRSAKLNAKLYAKNLNIVTGRNDVQADSLQATPRAADGSEKPQLAIDSSALGGMYAGAIRLVGTEQGVGVKLAGDMAASGGDIRIDASGKLSLAQASSQGDLKIAAQAVELNGKTYAGGSAEIRSAEELVNRQSLAARERIALEAAHIDNAGVIEAGVEPDERRNARGDLELRSGTLRNAGSLVASRALEAKASQALDNQGGSLKGATVRVDGGHLDNRGGKLLAEGELRVEASSLDNRQDGLLQSRDRAVVKTRGDLDNRGGQVIGLNDLEVGAATLDNGQQGLLGSQQSTRVSAQALVNRGDGEVSGKRVEARVGSLDNRGGKLIGDDLLVVASGAIDNRLGLFSAANRLDLRARSLDNSGKGTLSSRGGLEVSLGGLLDNRDEGNLLSQGAQRVTVGQLDNRAGGLLSSRSELNVHGASLDNRGGVLVADAGLSATGGAFDNRDGGSASGKAGVRVEVASLRNDQGGKLLSDGRLDLAANAVGNAGGRIAAKGDLQATLGSLAQQGGELVSEKTLKVAADTLDNSQSGLIAANGGIAIEARQVDNRAGEISSTSKVAVNAREQLDNRGGKVIGDSGLRLTVQRLLNQAKGVLAGRDGLSLDGGELFNGDGGRLDSQNSLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFSSAGALALTSQAALDNQGGRLLSDAGVTLKGASLDNSRSGVISAKGAVDIRTGVLDNSRNGGIGSNAGITLVAARLDNGQQGRVSAKGLLDANLKGLDQRGGGVLVSETGVTLDLNGGTLVNRDGGLIATPGALLLRQLGAVDNGAGGEISSDRAFTLAAASLDNRGGRLIGADSLTLRIAQALDNSLGGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVDGALDNHAEGTVSGARLTLASASLDNSGKGLLSGNAGLSVVTGALDNAEGGQLISQGVLDVSSADLDNRGGALSGKQSLRLSAANLDNRGGLLTSDGELELTAGRVDSADGGEISARGDLRLTVERLVQRQGRLIGERGVSLDLRGGDLDNQGGLISARGPLSIERLNVLDNRQGGEISSQQGFELLARRIDNGQQGRIISAGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLSSKDGELAISLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDNGQGGLVSAQRALSFERDDTLLNNAGGRINGGSLLLKGASLDNSDGQLISQGRLDAILGGALVNTGAARLASGGDLLLRSASVDNRGGKLVSQGLLEISAGSLDNSASGTLAGQADMSLRLGGGALRNQQDGLIFSQAGALEVQAGSLDNRQGTLQAQGDNRLRIGGALDNQGGRLDSRAGNLDLQSGSLDNGAGGVLNSAKGWLKLVTGLFDNSAGVTQAQSLEIRAGQGVRNQQGHLSALGGDNRIVTADFDNQGGGLYASGLLSLDGQRFLNQGAAAGQGGKVGAGRIDFSLAGALANRFGQLESESELQLRAAAIDNSGGSLRALGRSGSTRLVAGGLNNAYGVLESANQDLDLQLGSLANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTNSSVLQAGRLNLDIGTFRQTADGKLLAVQSFTGRGGDWSNDGLLASDGSLRLDLSGGYRGNGRATSLGDFALNAASLDLGNAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAASLNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDITNLYGDVYSLGRLDIARDDAGNRAASLRNLSGVIESGKDFSLRASLIENRRAVLESKSGLYTAKMEQTACIEGVNAGDCSGKRNAIWTITQRDKTEVTASSAMGQLLAGGDFAIDGGTLNNLSSLIGSGGNLTANLEVLDNQGLETGELETIRVLRTARGGDIGGIDQKSRNFTNLYWYQSANFDPARAGEIPAALNAILSDWSFEYEFPSKGPTPISSGDQSYAAVIQAAGDVTVNASTRIDNGVTRPGYTFVGSGRQVGDSAVGGSGVSVVVPLTSQLPPDLARRQVNPVTLPGFSLPQGDNGLFRLSSRFAEDGNGSAALGAGADRTQGGSGVSVGQQGAGNVAGTWQGQGVRVDGLAGAANVQGQGGSALGGSLPGVARVQGVPGNATPSASHKYLIETNPALTELKQFLNSDYLLSGLGMNPDDSKKRLGDGLYEQRLIRDAVVARTGQRYIDGLSSDEALFRYLMDNAIAYKDKLQLQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPSGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAIEDRQGQTRWNTSRLQSVTQLGAEVSAGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHSFATGKKVTAKNDRVEHQSTVVSAGGDLSVQGGNDVTFVASQAKASNEAYLYAGNDLNLLAAHDESYSYYAKKKKGSFGRSSSRMSESETSTVVSSSIQAGQGAELVAKRDVNVEASSASSMKGELTVVAGRDVNLTAAANSYSSASAKSKSGGLGLSSTSKANAQSSSYTSVQGATLSGDTTVVQARRDISVAASNVVSTGKTALRAGNDIIIDSVAETSESHRSESKKKSGLMSSGGIGITLGTAKNASTQDTRTVVNQGSTIGSVLGDVDMRAGKNLSITASDVVAGKDINLVGQNVSILAADNQNVSEQTRKTSKSGLTLALSGTVGSAIDATYQNAKQARNEDDSRLSALQGIKAGLSGVQAWQAAQQNGGMTGENSAQFVGISASLGSQKSSSRQRQEQQISQGSTLTAGGNLNIIATGSGAVGEDGDLRVQGSKLQAGKDLQLIANRDVVLEAAANTQKLDGKNKSSGGAVGVSVGVGSGEAGISIFANANKGAGKEIGNGTTWTETTLDAGQKASLVSGRDTTLKGAQVNGESILAKVGRDLTLQSLQDRDYYDSKQKNVGGGASLAIVGQGGGANLSLSQSKLHSKYDSVQEQTGLFAGKGGFQVEVGKHTQLDGSVIASTAEAEKNRLSTGSLGWSEIRNKAEYKSQLQSVSVSSANDGAGAFVSNMPSGMLIAYNHGDSASGTTGSAISEGTLEVRDPARQQQDVATLSRDPSRANDSVSPIFDKEKEQKRLQQVQLIGEIGTQAMDILRTQGQLDADKAARAELEARGISAPDAGASERQVEDYRKALLGTNAYQDIMGKYGTGGDYQKAAQAVTAALQGLAGGDIGSALAGASSPYVAGVIKQVAGDNDTARIMAHAVLGAVVAQAQGNSAAAGGAGAAGSELAAQVISERLYGTRDSATLNEAQKQTITALASLAGGLAGSVVDGSSGGAIAGAAGGKNATENNFLGGGTPPGLISYGQAASSLTEYMRKNGATAEEITQAQRDLAQGQGFDGVQPANEFIKAWGEAMVAEAAGLGIVAGLGRFGLWGAKGATPVVTAEGRIGNSVFTDVNQTARPAAQANPNQPTLIADRVDAKIAAKGTPHPNGNMADAHAEIGVIQKAFNEGKTVGSDMTMNVVGKDVCGYCRGDIAAAASKSGLKSLTIQAKDDITGLPKTYYWEVGMKSIREKKI
>NZ_CP027171.1|WP_014603455.1|4703001_4704690_+|two-partner-secretion-system-transporter-TpsB2
MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGDDERCFEIRRIELEGAGHLDESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPRELAMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF
>NZ_CP027171.1|WP_003097347.1|4702476_4702704_+|DUF1161-domain-containing-protein
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG
>NZ_CP027171.1|WP_003097345.1|4702077_4702293_+|dodecin-family-protein
MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVVDTRGHIENGAVGHYQVTLKVGFRIANS
>NZ_CP027171.1|WP_003097343.1|4701089_4701977_+|LysR-family-transcriptional-regulator
MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDVCGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALRYGQGFEHLYYLLEAAVAGLGVAIAPEALVRDDLAAGRLAAPWGFIETDARLALWVPARLHDPRAGRLAQWLREQLAG
>NZ_CP027171.1|WP_003097340.1|4699777_4700986_-|tryptophan-synthase-subunit-beta
MTSYRNGPDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLLGAEVIPVTAGTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQQESKA
>NZ_CP027171.1|WP_003083536.1|4723016_4723412_+|hypothetical-protein
MPVLALRLTALAALAISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR
>NZ_CP027171.1|WP_003083553.1|4723676_4724930_-|MgtC/SapB-family-protein
MTLSLDLLLSLCTALAIGLLIGAERGWQERDHEDARQIAGIRTFSLAGLLGGFATLLAGELGSAVWVALLLALAALAVAGYVSDVRRGGDQGMTTEIALLMTFLLGSLALTEQRLLAAAGGIVLTLLLSLKDKLHALLKRLTAEELSGTLKLLFISVVLLPVLPNQGYGPWAFFNPYLTWWMVVLIAALGFSAYLAIRLIGSRKGLLLTAVLGGLVSSTVMTLTLARLRERMPDALLACALLATSALMFPRILVEIGAIHPALLKELALPFAATTLVYLGGTLFHALRGGRASQEAPDEPGLRNPFELLPALRFAALLSAILLLVEVGRRLFGDAGIYAVALLSGLADVDAITLSLARAAQGELDPGVASRGIALAALSNSLVKAGLVVLVGGKRLALQTLPFSLAGLLVGALLILL
>NZ_CP027171.1|WP_003083555.1|4725248_4726622_+|T3SS-effector-bifunctional-cytotoxin-exoenzyme-T
MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLGSRAHAATQAPLSRQDAPPAASLSAAEIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSLIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMDKVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYTNGEYQHLNRSLRQGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVKEGQVGHDAGYLSTSRDPSVARSFAGLGTITTLFGRSGIDVSEISIEGDEQEILYDKGTDMRVLLSAKDGQGVTRRVLEEATLGERSGHSEGLLDALDLATGTDRSGKPQEQDLRLRMRGLDLA
>NZ_CP027171.1|WP_003083559.1|4727117_4727804_+|CsgG/HfaB-family-protein
MSHSANKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIAVGKFDNRSSYMRGIFSDGVDRLGGQAKTILITHLQQTNRFNVLDRDNMSEIQQEAAIKGQAQRLKGADYVVTGDVTEFGRKEVGDRQLFGILGRGKSQIAYAKVALNIVNISTSEVVYSTQGAGEYALSNREVIGFGGTASYDSTLNGKVLDLAMREAVNKLVNAVDSGAWKPQNQ
>NZ_CP027171.1|WP_003083569.1|4727834_4728188_+|DUF4810-domain-containing-protein
MSKTITWTAALLGSMALAGCSGPKTLYQWEGYQAQVHEYFKGESKEAQAQALEADLEKIRAKNGAVPPGYHAQLGLLYSSIGKDDQMVREFETEKALFPESATYMDFLLNNARGGAR
>NZ_CP027171.1|WP_003083573.1|4728184_4728850_+|DUF799-domain-containing-protein
MKLARLSGLVAGFTLLALLGGCAPTKSVDYSAFKQAKPRSILVLPPLNESPDVKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD
>NZ_CP027171.1|WP_003083575.1|4728864_4729248_-|helix-turn-helix-transcriptional-regulator
MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP
>NZ_CP027171.1|WP_014603458.1|4729529_4731191_-|hypothetical-protein
MRYARHASRYSLFALAVSAALLPGAGWAANGDLAGARTPPSVACSWDREAALSYEERRLDTPLPFSGANVVTHDQTPLAERIVKGAGFDGFEPAFAKRLCAADGRTPVTSYAKALKLVTEEGRALWRAAVDRAQGRRAIPAGALPASDDRMLYWTRLYMTRTLRQWAPSFHLGKAQAQALQWRFERASRGQLDIDLPRRYAADGSRYRRMIISGFDVFTLGTPGTANTGLRNGNPSGATALALDGREFRLADGSLLRIEAYLLPVSYDPFNRGMQEDTLGPWFRPGPRRVDASITISQGGANQFWLEAWNGRFHGSSAGNDGIVYCPADSALPNYVLPLGSVTNPGTAPISLRGSGCNINPPRRWLGYDSASRWRQNLPAQFSKASLPVRQLLAADTWRGIERPPGATSQAAEGFDVTWHTNYDFFPDCANPRTENVPTNGVMNAMPDPSLVLPPNRRICARNGGGGDYLSNESAYRNTVLRDAFRLEIPAGHIHVPVMNNYYTGVPASGGGARNDNAISDARYEAYRSAIVAQTRALLVGVGNALAQGAQAD
>NZ_CP027171.1|WP_003083582.1|4731800_4731941_+|hypothetical-protein
MKRKMLAASLLLWMFSLTAQADCAVLGPGEDPCAGPVLGPTVCECP
>NZ_CP027171.1|WP_003083584.1|4732002_4732140_+|hypothetical-protein
MKKVLLAVFLLCGFSLTAQAACPVFGPSEDPCSGPVFGPSTCECP

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Crispr_ID: NZ_CP027171_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027171_3

5004560-5004673

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027171_3

>merge|NZ_CP027171|3|5004560-5004673|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP027171|3|2|5004560-5004673|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027171.1\|WP_003084314.1\|5009245_5009749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003084333.1\|5013843_5014338_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP027171.1\|WP_003118763.1\|5010463_5011483_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP027171.1\|WP_003084297.1\|4998364_4999735_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP027171.1\|WP_003084285.1\|4996147_4996900_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP027171.1\|WP_003084271.1\|4992449_4993115_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP027171.1\|WP_003084290.1\|4996940_4998299_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP027171.1\|WP_023656933.1\|5012303_5013002_+\|proline-hydroxylase	unknown	unknown	gnl\|CDD\|226274
NZ_CP027171.1\|WP_003084273.1\|4993175_4994237_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP027171.1\|WP_003084320.1\|5011502_5012255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003084301.1\|5001372_5002470_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP027171.1\|WP_003084312.1\|5008214_5009267_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP027171.1\|WP_003084339.1\|5014342_5015035_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP027171.1\|WP_003112937.1\|4994492_4995869_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP027171.1\|WP_003084327.1\|5013023_5013578_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027171.1\|WP_003084303.1\|5002524_5003679_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP027171.1\|WP_003084299.1\|4999850_5000954_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP027171.1\|WP_003084270.1\|4991408_4992287_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP027171.1\|WP_023098425.1\|5009853_5010465_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP027171.1\|WP_003084308.1\|5005716_5008104_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241

Protein	Function_ID	Function_description	E-value
NZ_CP027171.1\|WP_003084333.1\|5013843_5014338_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	1.65548e-66
NZ_CP027171.1\|WP_003118763.1\|5010463_5011483_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_CP027171.1\|WP_003084297.1\|4998364_4999735_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP027171.1\|WP_003084285.1\|4996147_4996900_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	3.1783e-108
NZ_CP027171.1\|WP_003084271.1\|4992449_4993115_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.54898e-08
NZ_CP027171.1\|WP_003084290.1\|4996940_4998299_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP027171.1\|WP_023656933.1\|5012303_5013002_+\|proline-hydroxylase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	1.58503e-77
NZ_CP027171.1\|WP_003084273.1\|4993175_4994237_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.13028e-163
NZ_CP027171.1\|WP_003084301.1\|5001372_5002470_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP027171.1\|WP_003084312.1\|5008214_5009267_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.67458e-32
NZ_CP027171.1\|WP_003084339.1\|5014342_5015035_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP027171.1\|WP_003112937.1\|4994492_4995869_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP027171.1\|WP_003084303.1\|5002524_5003679_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP027171.1\|WP_003084299.1\|4999850_5000954_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP027171.1\|WP_003084270.1\|4991408_4992287_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP027171.1\|WP_023098425.1\|5009853_5010465_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00328866
NZ_CP027171.1\|WP_003084308.1\|5005716_5008104_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0

>NZ_CP027171.1|WP_003084303.1|5002524_5003679_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP027171.1|WP_003084301.1|5001372_5002470_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP027171.1|WP_003084299.1|4999850_5000954_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP027171.1|WP_003084297.1|4998364_4999735_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP027171.1|WP_003084290.1|4996940_4998299_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP027171.1|WP_003084285.1|4996147_4996900_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACGKRAGQR
>NZ_CP027171.1|WP_003112937.1|4994492_4995869_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP027171.1|WP_003084273.1|4993175_4994237_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSVLLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPASAQHPRQAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP027171.1|WP_003084271.1|4992449_4993115_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSIRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFISDLNR
>NZ_CP027171.1|WP_003084270.1|4991408_4992287_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNHTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP027171.1|WP_003084308.1|5005716_5008104_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLIAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP027171.1|WP_003084312.1|5008214_5009267_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHGVLTRHAEEQTRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREKGYSTSGT
>NZ_CP027171.1|WP_003084314.1|5009245_5009749_-|hypothetical-protein
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASTLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP027171.1|WP_023098425.1|5009853_5010465_-|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLVALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP027171.1|WP_003118763.1|5010463_5011483_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP027171.1|WP_003084320.1|5011502_5012255_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP027171.1|WP_023656933.1|5012303_5013002_+|proline-hydroxylase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRIRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESAACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP027171.1|WP_003084327.1|5013023_5013578_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP027171.1|WP_003084333.1|5013843_5014338_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGSRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP027171.1|WP_003084339.1|5014342_5015035_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027171_1	1.1\|3298953\|23\|NZ_CP027171\|CRT	3298953-3298975	23	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13811-13833	0	1.0
NZ_CP027171_1	1.1\|3298953\|23\|NZ_CP027171\|CRT	3298953-3298975	23	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	1066-1088	0	1.0
NZ_CP027171_1	1.2\|3298997\|33\|NZ_CP027171\|CRT	3298997-3299029	33	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	1012-1044	0	1.0
NZ_CP027171_1	1.2\|3298997\|33\|NZ_CP027171\|CRT	3298997-3299029	33	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25270-25302	0	1.0
NZ_CP027171_1	1.2\|3298997\|33\|NZ_CP027171\|CRT	3298997-3299029	33	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13855-13887	0	1.0
NZ_CP027171_1	1.3\|3299051\|23\|NZ_CP027171\|CRT	3299051-3299073	23	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13909-13931	0	1.0
NZ_CP027171_1	1.3\|3299051\|23\|NZ_CP027171\|CRT	3299051-3299073	23	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	968-990	0	1.0
NZ_CP027171_1	1.1\|3298953\|23\|NZ_CP027171\|CRT	3298953-3298975	23	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25226-25248	1	0.957
NZ_CP027171_1	1.3\|3299051\|23\|NZ_CP027171\|CRT	3299051-3299073	23	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25324-25346	2	0.913
NZ_CP027171_1	1.3\|3299051\|23\|NZ_CP027171\|CRT	3299051-3299073	23	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	399737-399759	4	0.826

1. spacer 1.1|3298953|23|NZ_CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctacctcattcaacccc	Protospacer
***********************

2. spacer 1.1|3298953|23|NZ_CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctacctcattcaacccc	Protospacer
***********************

3. spacer 1.2|3298997|33|NZ_CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

4. spacer 1.2|3298997|33|NZ_CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

5. spacer 1.2|3298997|33|NZ_CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

6. spacer 1.3|3299051|23|NZ_CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgccct	CRISPR spacer
acagaatccgccgagtacgccct	Protospacer
***********************

7. spacer 1.3|3299051|23|NZ_CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgccct	CRISPR spacer
acagaatccgccgagtacgccct	Protospacer
***********************

8. spacer 1.1|3298953|23|NZ_CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.957

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctaccccattcaacccc	Protospacer
***********.***********

9. spacer 1.3|3299051|23|NZ_CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 2, identity: 0.913

acagaatccgccgagtacgccct	CRISPR spacer
aaaaaatccgccgagtacgccct	Protospacer
* *.*******************

10. spacer 1.3|3299051|23|NZ_CP027171|CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 4, identity: 0.826

acagaatccgccgagtacgccct	CRISPR spacer
ggtgaatccgccgagtacgccca	Protospacer
.  *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

292223 : 399102

Liberibacter_phage(15.38%)

tRNA,transposase,protease,integrase

attL 295543:295559|attR 342358:344232

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090808.1\|292223_292694_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_003090806.1\|293042_293273_-	DUF2789 domain-containing protein	NA	NA	NA	NA
WP_003090804.1\|293451_293649_+	hypothetical protein	NA	NA	NA	NA
WP_003090802.1\|293714_294044_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_003090800.1\|294154_294529_-	DUF5064 family protein	NA	NA	NA	NA
WP_003090799.1\|294664_295108_+	DedA family protein	NA	NA	NA	NA
WP_003090798.1\|295260_295578_+	hypothetical protein	NA	NA	NA	NA
295543:295559	attL	NA	NA	NA	NA
WP_003090797.1\|295567_296467_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
295543:295559	attL	NA	NA	NA	NA
WP_003090796.1\|296689_296923_+	DUF3509 domain-containing protein	NA	NA	NA	NA
WP_003090795.1\|296988_297219_+	hypothetical protein	NA	NA	NA	NA
WP_003090794.1\|297193_297712_-	hypothetical protein	NA	NA	NA	NA
WP_003154870.1\|298306_299446_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071534604.1\|299448_301110_+	hypothetical protein	NA	NA	NA	NA
WP_003090790.1\|301109_302984_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_034082648.1\|302976_303384_+	hypothetical protein	NA	NA	NA	NA
WP_023098552.1\|303771_304878_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_031629774.1\|305355_306354_+	carboxylate--amine ligase	NA	NA	NA	NA
WP_003154856.1\|306429_307569_+	peptidase S1	W5SAB9	Pithovirus	1.1e-05	32.4
WP_003154854.1\|307637_308765_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	6.7e-27	28.3
WP_003090785.1\|308754_309513_+	hypothetical protein	NA	NA	NA	NA
WP_003090784.1\|309505_310600_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	8.2e-38	34.4
WP_003090783.1\|310599_311547_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_023098554.1\|311546_312275_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_003090782.1\|312277_312871_+	TerD family protein	A0A2I7QY07	Vibrio_phage	2.4e-23	37.4
WP_003154850.1\|312867_314049_+	stress protein	NA	NA	NA	NA
WP_003090780.1\|314096_314546_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_003090778.1\|314558_315593_+	TerC/Alx family metal homeostasis membrane protein	A0A291LBC5	Escherichia_phage	6.5e-69	45.9
WP_003090777.1\|315621_316200_+	TerD family protein	K4JRX3	Caulobacter_phage	2.5e-30	39.8
WP_003090776.1\|316235_316814_+	TerD family protein	NA	NA	NA	NA
WP_003090774.1\|317077_318409_+	hypothetical protein	NA	NA	NA	NA
WP_023104035.1\|318521_319715_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_077565896.1\|319940_320960_+	glycerate kinase	W6LM47	Streptococcus_phage	1.1e-36	39.0
WP_003090772.1\|320956_323923_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	96.8
322821:322837	attR	NA	NA	NA	NA
WP_003090771.1\|323926_324487_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.8e-57	96.8
322821:322837	attR	NA	NA	NA	NA
WP_023098450.1\|324927_326358_-\|transposase	IS1182-like element ISPa7 family transposase	NA	NA	NA	NA
WP_000845048.1\|326534_327548_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000442373.1\|327754_327991_+	trimethoprim-resistant dihydrofolate reductase DfrB1	A0A0H5ARK7	Pseudomonas_phage	1.6e-12	68.1
WP_000679427.1\|328203_328551_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|328544_329384_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000376623.1\|329511_330012_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001381192.1\|329980_330973_-	AAA family ATPase	NA	NA	NA	NA
WP_000935451.1\|330975_332691_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_105440765.1\|332806_332983_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000935451.1\|333056_334772_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001381192.1\|334774_335767_+	AAA family ATPase	NA	NA	NA	NA
WP_000376623.1\|335735_336236_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|336363_337203_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|337196_337544_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_048608579.1\|337660_338506_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA11	NA	NA	NA	NA
WP_011807067.1\|338511_338757_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_000381802.1\|338846_339380_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_000845048.1\|339528_340542_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_023098450.1\|340718_342149_+\|transposase	IS1182-like element ISPa7 family transposase	NA	NA	NA	NA
WP_023098557.1\|342814_344020_+	hypothetical protein	NA	NA	NA	NA
WP_003090694.1\|344266_345517_+	TerD family protein	NA	NA	NA	NA
WP_023083423.1\|345666_346278_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_023083424.1\|346676_346979_-	hypothetical protein	NA	NA	NA	NA
WP_003090692.1\|347069_348470_-	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	2.1e-38	32.2
WP_003090691.1\|348469_349057_-	hypothetical protein	NA	NA	NA	NA
WP_003119937.1\|349158_349386_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003090688.1\|350134_350356_+	ParD-like family protein	NA	NA	NA	NA
WP_003090687.1\|350352_351135_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003090686.1\|351188_351422_+	hypothetical protein	NA	NA	NA	NA
WP_003090684.1\|351620_351908_+	DUF3509 domain-containing protein	NA	NA	NA	NA
WP_003090682.1\|352232_352409_-	hypothetical protein	NA	NA	NA	NA
WP_003090681.1\|352493_352820_-	hypothetical protein	NA	NA	NA	NA
WP_003090679.1\|353011_353875_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003090677.1\|354124_356047_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.1e-128	38.5
WP_003099089.1\|356064_356598_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	2.0e-13	38.1
WP_003090673.1\|356659_356854_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003099086.1\|356877_357234_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003090666.1\|357331_358348_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	7.9e-27	33.3
WP_003090664.1\|358382_360761_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003090661.1\|360764_361067_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.0e-11	38.9
WP_003090655.1\|361047_361404_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_023098559.1\|361745_363824_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	7.4e-40	34.4
WP_014603868.1\|363820_365200_+	DNA protection protein	NA	NA	NA	NA
WP_014603867.1\|365270_366767_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	3.3e-146	55.5
WP_014603866.1\|366763_368287_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	6.7e-139	57.7
WP_014603865.1\|368283_370188_+	AAA family ATPase	NA	NA	NA	NA
WP_003090631.1\|370184_371861_+	ATP-dependent helicase	A0A1V0SAC2	Catovirus	7.2e-09	26.0
WP_014603864.1\|371857_373009_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	3.4e-42	46.6
WP_003090627.1\|373013_376007_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.1e-198	40.3
WP_086937300.1\|376320_377482_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.3e-85	53.6
WP_049285002.1\|377656_378517_-	WYL domain-containing protein	NA	NA	NA	NA
WP_003090625.1\|378522_382422_+	ATP-binding protein	NA	NA	NA	NA
WP_003090623.1\|382418_383066_+	hypothetical protein	NA	NA	NA	NA
WP_003090621.1\|383062_384313_+	hypothetical protein	NA	NA	NA	NA
WP_019486382.1\|384309_385146_+	hypothetical protein	NA	NA	NA	NA
WP_087819173.1\|385424_386563_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-47	38.7
WP_123788669.1\|386874_387408_-	hypothetical protein	NA	NA	NA	NA
WP_003090617.1\|388921_390271_-	hypothetical protein	NA	NA	NA	NA
WP_023098564.1\|390267_396564_-	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_003090610.1\|396578_397217_-	radical SAM protein	NA	NA	NA	NA
WP_004350147.1\|397218_399102_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	7.5e-39	28.3

DBSCAN-SWA_2

533479 : 540373

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090402.1\|533479_534760_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.4e-97	45.2
WP_003108773.1\|534761_536159_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003090397.1\|536163_537138_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_023098569.1\|537225_538209_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-140	73.4
WP_003090393.1\|538205_538541_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003090391.1\|538537_538843_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|538842_539202_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|539198_539594_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|539704_540373_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_3

4721210 : 4774008

Shigella_phage(16.67%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086937300.1\|4721210_4722373_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.3e-85	53.6
WP_003114585.1\|4722639_4722918_+\|transposase	transposase	NA	NA	NA	NA
WP_003083536.1\|4723016_4723412_+	hypothetical protein	NA	NA	NA	NA
WP_003083553.1\|4723676_4724930_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_003083555.1\|4725248_4726622_+	T3SS effector bifunctional cytotoxin exoenzyme T	NA	NA	NA	NA
WP_003083559.1\|4727117_4727804_+	CsgG/HfaB family protein	NA	NA	NA	NA
WP_003083569.1\|4727834_4728188_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_003083573.1\|4728184_4728850_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_003083575.1\|4728864_4729248_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014603458.1\|4729529_4731191_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|4731800_4731941_+	hypothetical protein	NA	NA	NA	NA
WP_003083584.1\|4732002_4732140_+	hypothetical protein	NA	NA	NA	NA
WP_003083586.1\|4732762_4734595_+	asparagine synthase (glutamine-hydrolyzing)	G9E4W0	Ostreococcus_lucimarinus_virus	6.2e-22	23.7
WP_003083588.1\|4734647_4735076_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003083590.1\|4735283_4735832_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	8.0e-34	41.6
WP_003083593.1\|4735870_4736377_-	DUF1993 family protein	NA	NA	NA	NA
WP_003083596.1\|4736442_4737363_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003083599.1\|4737470_4738358_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003083601.1\|4738420_4739125_+	DsbA family protein	NA	NA	NA	NA
WP_003118563.1\|4739208_4739664_+	OsmC family protein	NA	NA	NA	NA
WP_003083610.1\|4739774_4740008_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003083612.1\|4740019_4740457_-	hypothetical protein	NA	NA	NA	NA
WP_003083614.1\|4740513_4740930_-	hypothetical protein	NA	NA	NA	NA
WP_003118564.1\|4741021_4742149_+	hypothetical protein	NA	NA	NA	NA
WP_003114660.1\|4742156_4743140_-	hypothetical protein	NA	NA	NA	NA
WP_003083616.1\|4743172_4743838_-	HAD family hydrolase	NA	NA	NA	NA
WP_003083618.1\|4743830_4744373_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003083621.1\|4744450_4746496_+	oligopeptidase A	A0A1V0SD92	Indivirus	4.6e-34	21.3
WP_003083624.1\|4746492_4746768_+	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_003083628.1\|4746856_4747915_+	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_003083630.1\|4748144_4749059_-	hypothetical protein	NA	NA	NA	NA
WP_003083632.1\|4749120_4750833_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_003083634.1\|4750825_4752025_-	ABC transporter permease	NA	NA	NA	NA
WP_003136959.1\|4752024_4752744_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-18	36.3
WP_014603460.1\|4752740_4755839_-	protein kinase	M1PCM5	Moumouvirus	1.6e-22	27.4
WP_003083639.1\|4755846_4756575_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003083642.1\|4756584_4757265_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_003083648.1\|4757261_4760795_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_014603461.1\|4760791_4762141_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_003115052.1\|4762147_4763482_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003083660.1\|4763497_4763962_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_034052395.1\|4764006_4765536_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_003083664.1\|4765903_4766938_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_003083666.1\|4767026_4767545_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003083668.1\|4767557_4769054_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003083670.1\|4769129_4769618_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003119488.1\|4769785_4770631_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003083674.1\|4770632_4771142_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003083676.1\|4771138_4772998_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003083679.1\|4772961_4774008_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_4

5296136 : 5348802

Pseudomonas_phage(24.0%)

tail,plate,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003085059.1\|5296136_5297162_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|5297240_5297810_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|5297893_5298247_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003085067.1\|5298237_5298780_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003085069.1\|5298752_5299985_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	1.6e-77	43.1
WP_003085071.1\|5300028_5300535_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003085073.1\|5300629_5302183_-	SpoVR family protein	NA	NA	NA	NA
WP_003085075.1\|5302179_5303451_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|5303551_5305474_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003085081.1\|5305752_5306085_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003085083.1\|5306128_5306980_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2R4ALP3	Aeromonas_phage	2.4e-08	44.2
WP_003085085.1\|5306979_5307360_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003085087.1\|5307396_5308203_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003085089.1\|5308318_5309305_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|5309301_5310594_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003085092.1\|5310574_5313376_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003085094.1\|5313502_5314519_+	phosphotransferase	NA	NA	NA	NA
WP_003085095.1\|5314515_5315190_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003085097.1\|5315191_5315950_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003085099.1\|5315950_5317012_-	DUF3530 family protein	NA	NA	NA	NA
WP_023098434.1\|5317163_5319557_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003099542.1\|5319605_5320235_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|5320363_5321398_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|5321631_5322741_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003085111.1\|5322796_5323843_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014604087.1\|5323957_5325205_+	ABC transporter permease	NA	NA	NA	NA
WP_003085119.1\|5325310_5326141_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|5326264_5326939_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003085124.1\|5326938_5327757_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|5327829_5329308_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003085128.1\|5329494_5329809_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003085129.1\|5329908_5330679_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	6.1e-72	59.0
WP_003085132.1\|5331136_5331337_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003085135.1\|5331384_5331744_+	hypothetical protein	NA	NA	NA	NA
WP_003137382.1\|5332106_5332556_+\|holin	holin	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003085139.1\|5332577_5333093_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003085141.1\|5333089_5333647_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003085143.1\|5333799_5334126_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003085151.1\|5334122_5335010_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003137385.1\|5335002_5335536_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	5.2e-62	64.6
WP_003085168.1\|5335537_5337646_+	hypothetical protein	Q9ZXK6	Pseudomonas_virus	2.6e-218	51.1
WP_003085172.1\|5337654_5338095_+	hypothetical protein	NA	NA	NA	NA
WP_003085173.1\|5338137_5339298_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_003085175.1\|5339310_5339814_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|5339828_5340173_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_023098436.1\|5340342_5342580_+\|tail	phage tail length determinator protein	NA	NA	NA	NA
WP_003085182.1\|5342589_5343462_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|5343436_5343643_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003085186.1\|5343700_5344690_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.7e-106	55.8
WP_003085188.1\|5344722_5345352_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.2e-87	78.5
WP_003085190.1\|5345348_5345711_+	hypothetical protein	H2BDA0	Pseudomonas_phage	6.5e-16	48.7
WP_003118919.1\|5345707_5345965_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003085194.1\|5346312_5346918_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.1e-75	66.3
WP_003085203.1\|5346919_5347969_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|5347965_5348802_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_5

6086852 : 6095881

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073660134.1\|6086852_6087488_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-40	52.3
WP_003092335.1\|6087533_6088427_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|6088531_6089536_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|6089962_6090286_-	ferredoxin family protein	NA	NA	NA	NA
WP_003122151.1\|6090352_6092920_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
WP_003092265.1\|6093045_6094053_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|6094200_6094707_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|6094840_6095881_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

Anti-CRISPR protein detection

Acr_ID: NZ_CP027171.1|WP_003158163.1|3349576_3349951_+|hypothetical-protein

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Acr_ID: NZ_CP027171.1|WP_031635407.1|3351692_3352085_+|hypothetical-protein

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Acr_ID: NZ_CP027171.1|WP_003158159.1|3352103_3352427_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP027171.1|WP_003158163.1|3349576_3349951_+|hypothetical-protein

3349576_3349951_+

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

NZ_CP027171.1|WP_031635407.1|3351692_3352085_+|hypothetical-protein

3351692_3352085_+

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

NZ_CP027171.1|WP_003158159.1|3352103_3352427_+|hypothetical-protein

3352103_3352427_+

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027171

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

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