CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027397	Yersinia intermedia strain FDAARGOS_358 chromosome, complete genome	2 crisprs	DEDDh,RT,csa3,DinG,WYL,cas3	1	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027397_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027397_1

625425-625510

Orphan

Consensus_repeat	Method
CCGCCGAAGCCGCGTTGAAAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027397_1

>merge|NZ_CP027397|1|625425-625510|CRISPRCasFinder
CCGCCGAAGCCGCGTTGAAAGCAAAGGACGATGAACTGGCCAGCGAAACAAATCGGGCAAATACCGCTGAAGCCGCGTTGAAAGCA

>NZ_CP027397|1|1|625425-625510|CRISPRCasFinder
CCGCCGAAGCCGCGTTGAAAGCA	AAGGACGATGAACTGGCCAGCGAAACAAATCGGGCAAATA
CCGCTGAAGCCGCGTTGAAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027397.1\|WP_080608208.1\|617663_619145_+\|terminase	unknown	unknown	gnl\|CDD\|222858
NZ_CP027397.1\|WP_080608211.1\|622364_623714_+\|DUF2213-domain-containing-protein	unknown	unknown	gnl\|CDD\|370768
NZ_CP027397.1\|WP_080608209.1\|620633_621533_+\|phage-head-morphogenesis-protein	unknown	unknown	gnl\|CDD\|309383
NZ_CP027397.1\|WP_080608206.1\|616566_616893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293126
NZ_CP027397.1\|WP_080608219.1\|627346_628096_+\|Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|227779
NZ_CP027397.1\|WP_080608212.1\|624153_625236_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608222.1\|632666_633140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608207.1\|617061_617664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608218.1\|626938_627322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_050089496.1\|615953_616274_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608220.1\|628235_628925_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368292
NZ_CP027397.1\|WP_080608488.1\|619189_620632_+\|DUF1073-domain-containing-protein	unknown	unknown	gnl\|CDD\|368870
NZ_CP027397.1\|WP_080608223.1\|633139_633610_+\|DUF1833-family-protein	unknown	unknown	gnl\|CDD\|286019
NZ_CP027397.1\|WP_080608214.1\|625533_625914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608221.1\|628917_632670_+\|tape-measure-protein	unknown	unknown	gnl\|CDD\|368757
NZ_CP027397.1\|WP_050287253.1\|623714_624143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608216.1\|626221_626572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608215.1\|625913_626225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_105165836.1\|621569_622313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027397.1\|WP_080608217.1\|626573_626942_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027397.1\|WP_080608488.1\|619189_620632_+\|DUF1073-domain-containing-protein	gnl\|CDD\|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	5.90135e-08
NZ_CP027397.1\|WP_080608208.1\|617663_619145_+\|terminase	gnl\|CDD\|222858	PHA02533, 17, large terminase protein; Provisional.	0.000163294
NZ_CP027397.1\|WP_080608211.1\|622364_623714_+\|DUF2213-domain-containing-protein	gnl\|CDD\|370768	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213). Members of this family of bacterial proteins comprise various hypothetical and phage-related proteins. The exact function of these proteins has not, as yet, been determined.	5.86213e-05
NZ_CP027397.1\|WP_080608209.1\|620633_621533_+\|phage-head-morphogenesis-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	1.63496e-07
NZ_CP027397.1\|WP_080608206.1\|616566_616893_+\|hypothetical-protein	gnl\|CDD\|293126	pfam16518, GrlR, T3SS negative regulator,GrlR. GrlR is a family of protobacterial type III secretion system negative regulators. Structurally, GrlR consists of a typical beta-barrel fold with eight beta-strands containing an internal hydrophobic cavity and a plug-like loop on one side of the barrel. Strong hydrophobic interactions between the two beta-barrels maintain its dimeric architecture. A unique surface-exposed EDED (Glu-Asp-Glu-Asp) motif is identified to be critical for GrlA-GrlR interaction and for the repressive activity of GrlR. The locus of enterocyte effacement (LEE) is essential for virulence of enterohaemorrhagic Escherichia coli (EHEC) and enteropathogenic E. coli (EPEC). It encodes some 20 genes including an overall regulator ler and two others, GrlR and GrlA, that form the type three secretion system for infection. GrlR comlexes with GrlA to repress expression of ler. GrlA is found in family pfam00462.	5.45922e-13
NZ_CP027397.1\|WP_080608219.1\|627346_628096_+\|Ig-domain-containing-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	2.84857e-17
NZ_CP027397.1\|WP_080608221.1\|628917_632670_+\|tape-measure-protein	gnl\|CDD\|368757	pfam06120, Phage_HK97_TLTM, Tail length tape measure protein. This family consists of the tail length tape measure protein from bacteriophage HK97 and related sequences from Escherichia coli O157:H7.	1.94916e-17
NZ_CP027397.1\|WP_080608223.1\|633139_633610_+\|DUF1833-family-protein	gnl\|CDD\|286019	pfam08875, DUF1833, Domain of unknown function (DUF1833). This family of proteins are functionally uncharacterized and are predicted to adopt an all-beta fold. They are often found in gene neighborhoods containing genes for an NlpC peptidase and a Ubiquitin domain predicted to be involved in tail assembly.	0.000147807
NZ_CP027397.1\|WP_080608220.1\|628235_628925_+\|hypothetical-protein	gnl\|CDD\|368292	pfam05117, DUF695, Family of unknown function (DUF695). Family of uncharacterized bacterial proteins.	0.00412073

>NZ_CP027397.1|WP_080608212.1|624153_625236_+|hypothetical-protein
MLVFNHADGHFNNAAYMAQYRALQEERRIAANAQANITEGLIQGGMQNSEAYVKNAAGILTRDFWQEVDNQIIQIRDNDQGREFLTDLQSIGTPINPGKTAKLYTVGQDISDEVTISMDAQPPVYKDHIDFDTDGDPVPAFTAGFGVNWRHWTGLKSENIDLVVESQARKMVKVFSHIADYMLDGSSRAKAGSYVGQGIRNHRNTKKIDLGASGANINLVAATNDQIIAFFNQDFAKILDDNYIDAVDVLWISPEIRRRLDAPLSQSGNYKEGTLREEILRFSRIKAFRSTFKMKGNEFFGYVKNREYISPLVGAPVSTVAVPRLMPNANYDFMIWALMGIQIKADVNGRGGVFYAADMS
>NZ_CP027397.1|WP_050287253.1|623714_624143_+|hypothetical-protein
MARYNRINIDGAAETENRQMKVAVLPGSLAFIGSDDKFDKFVTAGAGEGVQLYAIGVDYLQGKRVTETVAIGDIGVGNYFETGRSFAMLVKAAAALNVDTPLAVDATGVLRIGVVGTDHIVAYSKEKFTVGASAELVIVRAA
>NZ_CP027397.1|WP_080608211.1|622364_623714_+|DUF2213-domain-containing-protein
MSRICVNVLSVINSASNITSEIIDGVEHIVVKDVCPVIDDIVLNGGLYPADEISKGYQSLEGKPMPYGHPKIEGQYVSASNVRAVNEYHIGAFARNVRKDGDRVLMDMCVNRRYAEATDKGKEVVNRLDDMKAGKEVEPVGVSTGLNLNRSAGKGVSKGKKYNWIARNHAYDHCAILLHETPAGTPREGVGIFVNAAGEELQIETVSLADSSDCTREGWFNKVLFHFSTNSQLSHSEIYEAISNALNAGGDFNIRRWIESIYPNYFIYEDGPKKFKQSYLIDESQTAQLVGEPTEVIKKVEYDEVKTNGELNPMKDMITNALKAAGKPTDGKTEAELLDAYNQLMAKPADTTVNTDAITAAVNAAVKPLSDELSGLKTQLAANADKELATKRAAVKAKFKLEDAAVNTLAGEALDGLFAQTQSTIGLNGAFNHGDAQDDMADYLPGKVA
>NZ_CP027397.1|WP_105165836.1|621569_622313_+|hypothetical-protein
MAQEFGFLVKVFSQEKYRDDFLDGKFYMNPISFFKNYEEETVNNIGDKNEAVRAWLQPHELSITFKPPGMDEFTIPGKDIAAPIVIRSNVHDNYNVLCLTLLHSHGIDISEGVTDEEVELLNGYFHLPEEAIGLGEYAVVIPNLPRFLERIRSAAQALISADKASSFFADKVKYYDKSKTLPLLNEHEPVFHKQSDYEHQSEFRLCLDRGGAEPTPYTFDVGDIRDLANPCLTSEVNSMFSLDIKKI
>NZ_CP027397.1|WP_080608209.1|620633_621533_+|phage-head-morphogenesis-protein
MRSDIAQRYYDIKVALRQQFDIYLTGTIQTNNSQSSAIICNNAADELPSLYYVNAGEFIYDMDARRLAALLEIVQTILDDYLLEGNSQNIWAMSYVSSEFERGTLNAYTNLAAQSPVYASQTTLSQLLFSAPYLNQIQMAYVPVYSDWEGLSDATRADLANVLADAIGRGINPRETASIISKRLDVSMGKAENIAQTEQVGALREAQWSETTWAKERLGLNTGLLHLSALKPTTRQTHAFWHGKVRTVEEVREWYSINGNKYHCYCSQIPAILNDKGEIVNEGLSDRLAEERRNWQIIQ
>NZ_CP027397.1|WP_080608488.1|619189_620632_+|DUF1073-domain-containing-protein
MAVNSLAIERARMMNLSFGKSGNTKRTRIYQEFGYPENLTFDEYYNAYERNAVAGAAIKRMVEGCWEDYPEVFDGEKSQDSKGETPWDKATKKLLKRCWKQIKDADRRNLVGRYSALLIQLRDNAQWSEPIVATTIGSLKEKALVRLIPVWESQLDVSGWDTDPLSENYGQPKMYSYTELPVEGQHSGAPSRQVNIHPDRVIILAEGSEDGTLTSGVPLLRAGFNKLLDIEKTSGGAAEGFLKNASRQLNYEFDKEVDFNKLAKALGTNLDGLPDALDEQVKRLNDSTDSASFMQAGKATVLAVTVADPEPTWRTLVNEFCSTLPMPFKVLMGMQTGERASAEDAKDWAKTRMSRRNGFLSDLIETVLTRFWTIGIIDEPPTGEITISWSDLLAPSKAAKIADADKMADVAVKTQNAFGRSAIKENEIRAAAELPTLPEYEIELPPRPTGDPLTDDKQTSGPAGDTKKQSGPNSKQPPGK
>NZ_CP027397.1|WP_080608208.1|617663_619145_+|terminase
MKPEHLKLLADKDWRLNNLYWITDKEGKPIRFRMTPEQREYFEGIHTRNIILKARQLGFTTEVCIIQLDAALFESAKCALIAHTLNDARRLFREKVKYAYDKLPDEIKAANPSNNDSAGELVFNKGGSLYVSTSFRGGTLRYLHVSEFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKAQLQGKKLSPLDWKFFFFSWWKNPQYAIDPVEALPPRLVDYFAEMEAKHGVQLNERQKAWYYAKEKTLGDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRICKLPDNSHLPVHTYWDLGVGDSTVIWFVREVGSEYHIIDYYENSGEGLRHYMKVLKERGYEYGEHWAPHDIDNREFSGDGKTRRQLASEGYEVDGETYSIEFNVVPKLSIDSGIESAREILPLCVFDEEKCAEGITHLEGYRKEWDDKRGCWKDKPLHDHTSHAGDGFRYFAVAMKNKLSIQGMLVRKR
>NZ_CP027397.1|WP_080608207.1|617061_617664_+|hypothetical-protein
MTKPDWEAIESAYRAGLMSIREIASQHGITHGAINKRAKRDGWERDLKAKIKAKADALVSKREVSTQVSTEKALSERILIEANAEVIANVRMEHRGDIRRAREITNALFDELGAECADIEALRKLGELMLQPDENGRDRLNEVYQSIIALPERVKAVKALSDAMKNLIGLERQAYDIGEDKGDNVVSKLSDLMDSLSQGA
>NZ_CP027397.1|WP_080608206.1|616566_616893_+|hypothetical-protein
MKDGIYKLIFNTNVNPNGKLDGVVTVRDGAINGGDHVCYYMGKVTGSKASVKSVPHNKHDTNAFNGKTPLDLELSIEDHGNHYLFKGHIKEDHSKTIHGQLNFLSELA
>NZ_CP027397.1|WP_050089496.1|615953_616274_-|hypothetical-protein
MKISIIAATVIFSASLSGCAVQNDKTQFHGIGLTYQSDIKKLDNGDFFTEVEAAPAAGRIKGAIGTASKKASDFCRAQNKAMKEVKTDIDTHLLVNGVAGLTFQCV
>NZ_CP027397.1|WP_080608214.1|625533_625914_+|hypothetical-protein
MAAQITPADVKSLLAELGYSIPEVVLNLIICQVDKIDTCLDEAGYDDCIQQLIKLYAIALMAASSGARKIKSQSAPSGASRSFEYGEAGLTQLRDSLTAMDVSGCTSGLPITVGNPVGLFMTVRGN
>NZ_CP027397.1|WP_080608215.1|625913_626225_+|hypothetical-protein
MVDAKKLADLMNMMFKSDPVAVESIISNRVIVNEVMASSDCPIMLARDSHGVLTVGAIGILNGLAAPGTGYLAAIYGDDKQLSGFTVVSCKECEPYQFEQYHL
>NZ_CP027397.1|WP_080608216.1|626221_626572_+|hypothetical-protein
MSAAANWSYTATATLWKKSGKPDDYGKQAWLSPIQIMCDYGGDATAKLGGIGLELVIKNTHWTEYAEAERGDYILIGDSVATDPTKVDGADEVRHIIRYADTFERIADDYAIITGV
>NZ_CP027397.1|WP_080608217.1|626573_626942_+|hypothetical-protein
MGAKVKGIREAKANLERLIGDIQGRKAVRAITKALIIGASQAALYTPIDTSTLINSQFRDISVNGTRLTGRVGYSANYAMYVHDLNVKQTFRRATAEKEFLTKGFADSKQAIEKAIMEEMKL
>NZ_CP027397.1|WP_080608218.1|626938_627322_+|hypothetical-protein
MTPSMHKRVRDYFVDAGLTTGFTTQMLKWRDTGKLTEQFIVFRPNGGSSIRNDLGSEYYVLVDVIGAVNEDEAADSAAQAIITHVQANPNPNDCIGYIENLGSIPSPVTTTEGRLVYRLQFAIKYGD
>NZ_CP027397.1|WP_080608219.1|627346_628096_+|Ig-domain-containing-protein
MQGCQNDYGKLVGRVAVLRMAFGCPETPPLAADWKRMGALTTKGLDYSMNTISSDADDSKGLVENLVTNMDLTISGEGEWRKRAKTTEIGPVNMSKYLFTEVQAGRQPGIWVRFDFLGVDDGTYIQGYFNTTSWSSDFGSSDFATYSGEWKVADADSVTFVDGSTIPVASVTVAPATSTGAVAATVQLTATVLPADATDKTGVWTTSDATKATVSSTGLVTRVAVGAATITFTTNDGAKTASSNITITA
>NZ_CP027397.1|WP_080608220.1|628235_628925_+|hypothetical-protein
MTPMLDIGEMLLSDTEHQRDYFFLPSLKNMTKIGTATEIVEIYAVLNGSELNQVLAPAMNANLPVFLMPKIAINKCTNHIISFAIQVMEACCEQSLTELIGEFKGWRNCIVYRPGKMSKEKIIIIARELIEHGVIGKAKIRKLQKNESKNDYSSEFNAMDYINSARIHFNMSRAEAEQLTMTEFQLLLKAKYPEEKGFTREEYDEIMDADDRLQERLIAEEDARLAKNG
>NZ_CP027397.1|WP_080608221.1|628917_632670_+|tape-measure-protein
MADEKDVGSIVYQVQMEVGQLILAQQQVSGRLDKLERNFDSTSKSANNTEKSFFSLSKVAGALTTALSVKAIADYAESWTVLNNRLVNAIKTGETLAEVNNRVFDIAQNSRSSLDSIATLYSRLERAMRSTGMSGAELGDITTTISKAMTISGATASESAGALVQLSQALALGVLRGQEFNSMSEQAPALMKGLADSLGVGTGQLRAMAAEGKLTTDVLITAFKQMAPTIEAEFAKTTATIGQSMQIATNNVTKFVGESATVKSSVSVFNGVLVTLSENLDAVTVALGFAASVMLGKYLNSIGNSSKVVIDKVSANSKAAVSELELAKDVLFRADAEDKSTASASAKAKSDLAAADAAVATAKANVTAMETAVERGNATILLSEKTIAQTMTEIEYVKSVEASSRANIKSATTAEARAVAEDYLQASIKSRGALEAKLAAEQMTLDAKRQGAVERLIMADDALTAAQANRAAAAIAASTAEAKQAVTTNAVVVATERFTLATAAATVAARAKQVAISALSSVYSLLGGPGGVIMLAAAAIYYWYQKTEEAKAEAVKFANSLDGVIEKMNQMSATQLRGTMAEAAKSIETQKDAVSELDGELKKLNDSLSVQLARRNALDAIGDTGTEEYSKVLGRVAEAENAVAIKSAELENAKGQLSGTQKNLDIITQQYLVTMQNNITATDSAISRGGVLAGVQNAVAHAFSLSTDAVSGYNGQINLMKPLSDKSKVLIKAAERRVALAKAEGVEKAKLQAQYAAEDSGETDDRVIQRTQDLAIEEYNLGEAKKNTKKETAAAAKEENKATAENARRVKQLQELQSGTEALILTEQRRYREAAQADAVSKLGKDATAAQIKEAQDLAGQEFDIKQRINDRKAASDINYYAAADLKRKDDLDQTDRMLKAELITFEQAQARKAQIAVDYQKTIAEATAAKAVTPQQELSGLVDPVQALANEHAKKLALIQQFETQKGVITANGLALMNAANTQYEQARIAAQWEVFRNQSVGNESLAAAFDSLAGNASNVFTGIITQSMTAEEAMRSLASNALNSLINGFVQMGIEWVKSAITGSTAQVAATATTTAAAVAGTATTTAASVSSAAATTTAWTPAAIVASIGSFGGAAAIGIGAVVAAMALSGSLSGKRKNGGPVSAGSMYQVGEGGMPEIYQAGTGKQYMIPGDNGKVISNKDMQGSGSAPNVSIQFIDRSTGRKSFDAQSSMSGNNLTVTAFISDLEEGGPMSQSITRNTTASRRANG
>NZ_CP027397.1|WP_080608222.1|632666_633140_+|hypothetical-protein
MIAEYPDWLPLAQKSGKNITKDTGFRTDQPTVGAPIFQKLTDDLKASFSVTFICTAAQHRAFYQWLRSPNYLDNCNRWFRLKVSTGTGDSGVEEQVLHFTSYPQFNQSGNIFTWTGSVVAKQIISADDDLDDIIIELPAPWGSWLDVIVTETLPRSP
>NZ_CP027397.1|WP_080608223.1|633139_633610_+|DUF1833-family-protein
MPGLREYLSHRPNRVMYITLKFTHPAFEQVRLVADQMFQKTLGGEVYSPSRMEVSESEQSDIPIIQCAVKLSRVAQDIKQGLKGWTGAQRMIPITAIYQKWDSIDMTTAVSTWSLFVKDISMDENDVTATIALKNPMINNVGKPYNTTDFPGLINI

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP027397_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027397_2

2151171-2151282

Orphan

Consensus_repeat	Method
GCGCAGTAGCCGTTAACTCCCCCCAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027397_2

>merge|NZ_CP027397|2|2151171-2151282|CRISPRCasFinder
GCGCAGTAGCCGTTAACTCCCCCCAACGGAGCGTACACGTAGTACGTGATGGCGGCGAGCACTGCGCAAGCCCAGAATGGCAAAGCGCAGTAGCCGTTAACTCCCCCCAACG

>NZ_CP027397|2|2|2151171-2151282|CRISPRCasFinder
GCGCAGTAGCCGTTAACTCCCCCCAACG	GAGCGTACACGTAGTACGTGATGGCGGCGAGCACTGCGCAAGCCCAGAATGGCAAA
GCGCAGTAGCCGTTAACTCCCCCCAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027397.1\|WP_032905595.1\|2142373_2143330_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP027397.1\|WP_005182172.1\|2147422_2148787_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP027397.1\|WP_005182112.1\|2160518_2160968_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP027397.1\|WP_032905591.1\|2156711_2157209_-\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|182942
NZ_CP027397.1\|WP_005182164.1\|2151414_2152866_-\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_CP027397.1\|WP_032905593.1\|2145315_2145930_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
NZ_CP027397.1\|WP_005182185.1\|2141231_2142011_+\|ion-channel-protein-Tsx	unknown	unknown	gnl\|CDD\|236922
NZ_CP027397.1\|WP_050288437.1\|2159350_2160460_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
NZ_CP027397.1\|WP_005182160.1\|2153166_2153421_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP027397.1\|WP_005182123.1\|2158301_2158718_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP027397.1\|WP_005182170.1\|2148848_2149340_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|180061
NZ_CP027397.1\|WP_005182120.1\|2158743_2159214_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP027397.1\|WP_032905590.1\|2157201_2158191_-\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP027397.1\|WP_005182181.1\|2143334_2145326_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP027397.1\|WP_050073439.1\|2150551_2151148_+\|protein-deglycase-YajL	unknown	unknown	gnl\|CDD\|183210
NZ_CP027397.1\|WP_032812973.1\|2145929_2146277_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|182568
NZ_CP027397.1\|WP_005182168.1\|2149677_2150589_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP027397.1\|WP_042569278.1\|2153425_2154346_+\|(2E,6E)-farnesyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182567
NZ_CP027397.1\|WP_050297417.1\|2154469_2156329_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP027397.1\|WP_005182174.1\|2146290_2147181_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001

Protein	Function_ID	Function_description	E-value
NZ_CP027397.1\|WP_032905595.1\|2142373_2143330_+\|cytochrome-o-ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	0
NZ_CP027397.1\|WP_005182172.1\|2147422_2148787_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.16333e-160
NZ_CP027397.1\|WP_005182112.1\|2160518_2160968_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	6.73743e-90
NZ_CP027397.1\|WP_032905591.1\|2156711_2157209_-\|phosphatidylglycerophosphatase-A	gnl\|CDD\|182942	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional.	1.35139e-106
NZ_CP027397.1\|WP_005182164.1\|2151414_2152866_-\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_CP027397.1\|WP_032905593.1\|2145315_2145930_+\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	1.1763e-138
NZ_CP027397.1\|WP_005182185.1\|2141231_2142011_+\|ion-channel-protein-Tsx	gnl\|CDD\|236922	PRK11528, PRK11528, hypothetical protein; Provisional.	1.19168e-154
NZ_CP027397.1\|WP_050288437.1\|2159350_2160460_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	0
NZ_CP027397.1\|WP_005182160.1\|2153166_2153421_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	7.88802e-25
NZ_CP027397.1\|WP_005182123.1\|2158301_2158718_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	8.29285e-66
NZ_CP027397.1\|WP_005182170.1\|2148848_2149340_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|180061	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed.	8.49653e-93
NZ_CP027397.1\|WP_005182120.1\|2158743_2159214_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	7.59006e-78
NZ_CP027397.1\|WP_032905590.1\|2157201_2158191_-\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	4.67086e-169
NZ_CP027397.1\|WP_005182181.1\|2143334_2145326_+\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP027397.1\|WP_050073439.1\|2150551_2151148_+\|protein-deglycase-YajL	gnl\|CDD\|183210	PRK11574, PRK11574, protein deglycase YajL.	5.20952e-138
NZ_CP027397.1\|WP_032812973.1\|2145929_2146277_+\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|182568	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional.	8.28967e-53
NZ_CP027397.1\|WP_005182168.1\|2149677_2150589_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	2.86452e-120
NZ_CP027397.1\|WP_042569278.1\|2153425_2154346_+\|(2E,6E)-farnesyl-diphosphate-synthase	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	0
NZ_CP027397.1\|WP_050297417.1\|2154469_2156329_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP027397.1\|WP_005182174.1\|2146290_2147181_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	4.44889e-142

>NZ_CP027397.1|WP_050073439.1|2150551_2151148_+|protein-deglycase-YajL
MSVSALVCLAPGSEETEAVTTIDVLVRAGIKVTTASVASDGALEIVCSRGVRLLADTRLVDVADQKFDVVVLPGGIKGAECFRDSPLLVATVRQTHNEGRLVAAICAAPALVLEHHNLFPVGNMTGFPALKDKIDATKWMDQRVVYDRRVNLVTSQGPGTAIDFALKIVFLLLGREKAEEIAWQLVLPPGIYNYTLRT
>NZ_CP027397.1|WP_005182168.1|2149677_2150589_+|2-dehydropantoate-2-reductase
MKITVLGCGALGQLWLSALYQQGHDVQGWLRVPQPFCSVNVITLSNEAFNQNLPTNDPEHLSKSELLLVCLKAWQVSSAVIALLPKLNPECKILLLHNGMGTEEELPHNEYTFLHGVTTHAARHDGNTIVHVASGITHIGPTTPTAIDISHLADVLHQALPDVAWHNDISAACWQKLAVNCVINPLTGLYNCRNGDLQRYPELVTRLCAEVASVMEMEGYHTSTSSLLSYVNDVIQSTADNISSLLQDLRCQRHTEIDYITGYLLQRARNHGMTLPENARLYDLIKRKENEYERIGAGLPGSW
>NZ_CP027397.1|WP_005182170.1|2148848_2149340_-|YajQ-family-cyclic-di-GMP-binding-protein
MPSFDIVSEIDMQEVRNAVENATRDLANRWDFRNVPASFELNEKNESIKVVSESDFQVEQLLDILRAQLSKRGIEGAALEIPEEMDRSGKTYSVEAKLKQGIESVQAKKLVKLIKDSKLKVQAQIQGEQVRVTGKARDDLQSVMALIRGADLGQPFQFNNFRD
>NZ_CP027397.1|WP_005182172.1|2147422_2148787_+|MFS-transporter
MNDNKMTPLELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALSGASEALIGIAIGIYGLAQAIFQIPFGLVSDRIGRKPLIVGGLLIFALGSVIAAMSDSIWGIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHAFGLHALFWAIAILALLGIVITLAVVPDADSHVLNRESSIVKGSVSKVLSNSRLLKLNFGIMCLHILLMSSFVALPQIMANAGLAPAQHWKVYLVTMLISFAAVVPFIIYAEVKRRMKQVFMGCVAVLFAAEMVLWSAGHNLWVIIAGVQLFFIAFNVMEAILPSLISKESPAGYKGTAMGIYSTSQFIGVAIGGSLGGWLFGMEGASMVFAGGAVIALVWFAVSTTMQEPPYVSSLRITLSELAVKDSALEQRLKAQPGVTEAVVVTAERSAYIKVDTKQTNRNQLEQLVNAV
>NZ_CP027397.1|WP_005182174.1|2146290_2147181_+|protoheme-IX-farnesyltransferase
MIKQYLQVTKPGIIFGNLISVVGGFLLASKGVIDYPLFLATLIGVSLVVASGCVFNNYIDRDIDRIMERTKNRVLVKGLIDPKVSLIYASVLGIVGMLLLYVAANPLAMVLAVIGFVIYVGVYSLYMKRKSVYGTLIGSLSGAAPPVIGYCAVTGQFDMGALILLLIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVIKGISVTKNHITLYILAFMVATLMLTLSGYAGYKYLVVAAAVSVWWLGMALRGYKATNDSVWARKLFVFSIIAITSLSVMMSVDFNVPSSAAGLLTYVG
>NZ_CP027397.1|WP_032812973.1|2145929_2146277_+|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSHPTSSHPTTTHGGASHGSLKSYLIGFILSVILTVIPFAMVMSGTASHTTILATVVGLAVVQIIVHLVYFLHMNGSSEERWNLVAFLFTAMIIAIVVVGSLWIMYNLNINMMVD
>NZ_CP027397.1|WP_032905593.1|2145315_2145930_+|cytochrome-o-ubiquinol-oxidase-subunit-III
MSTETLTNHNVAHAEHGHHDAGATKVFGFWIYLMSDCILFATLFATYAVLVNGTAGGPSGRDIFDLNFVLVETFLLLFSSITYGIAMLGMNKGHKNQVNTWLGLTFLFGLGFVAMEIYEFHHLIAEGYGPDRSAFLSSFFALVATHGIHVTTGLVWIIIMMIQVAKRGLNETNRTRLMCLSLFWHFLDVVWICVFTVVYLLGAM
>NZ_CP027397.1|WP_005182181.1|2143334_2145326_+|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTLDAVPLHEPIIMVTVAAIILGGLALVAALTYFGKWKWLWSEWLTSVDHKKIGIMYILVAMVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFMAMPFVVGLMNIVVPLQIGARDVAFPFLNSLSFWFFVVGVVLINISLGVGEFAGTGWLAYPPLSGKEYNPGVGVDYWIWSLQISGLGTLLTGVNFFATILKMRAPGMSMMKMPVFTWAALCTNILIIVSFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILVLPVFGVFSEVTATFSKKRLFGYTSLVWATIAITVLSFIVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYQGRIQFHSAMLWTIGFIITFSIGGMTGVLLAVPGANFVLHNSLFLIAHFHNVIIGGVVFGCFAGLTYWWPKSFGFTLNEKWGIRAFWFWIIGFFVAFMPLYVLGFMGMTRRLSQDINPEFHAMLMVAAGGAALIACGILCQVIQVFVSIRDREQNRDLTGDPWGGRTLEWSTSSPPPFYNFAVVPNVVDRDEFWDMKEKGEAYKRPAKYEEIHMPKNTGAGVIIAGFSLIFGFAMIWYIWWLAIIGFVGMIVTWIVKSFDEDVDYYVPVAEVERIENLHHEQISKAGVNHVN
>NZ_CP027397.1|WP_032905595.1|2142373_2143330_+|cytochrome-o-ubiquinol-oxidase-subunit-II
MRLKKYIKNMGMLSLFAATVMLSGCDMALMNPKGAIGVEQKTLILTAIGLMLIVVVPVIFMAFAFAWKFRASNKSATYTPNWSHSNKIELVVWAVPIIIIAILATITWKTSHELDPFKPIVVAGKEPITIEVVSLDWKWLFIYPEQGIATVNELAFPTDVPVNFKITSNSVMNSFFIPQLGGQIYAMAGMQTKLHLIANEAGKYNGISSSFSGKGFSGMKFTAIATPTQEDFNQWVAQVKKSPNTLNTTDDFNKLAEPSENSPVEYFSSVKPELFKGIIGKFMGDMNMHQKGDDMHKGMDMSQGMDMGEHAAHAGAEE
>NZ_CP027397.1|WP_005182185.1|2141231_2142011_+|ion-channel-protein-Tsx
MRKILIGALALTAITLAPVAQAEYQWGFGNISMNYLDWTRSTTHKSGDSSHKDDFAYIELEGGAGYSWGEVYGFFDLENPFNSKTAQPGDNQRYTFKTTGRYYLGDTGFNLYGHVYGTYSLPSAEGNDYSNFHEVNTLYGVGYNATLAGVWMKPFVALHYVDQTYYSGNNGYVVGWVAGYDFTAFDEKFSITNWNELEFNRAERYAAGNGGRNGVNGAISLWWTPVKQFTTGIQYRYAYNKLGEDFLQDAIIYSIKYNF
>NZ_CP027397.1|WP_005182164.1|2151414_2152866_-|tRNA-4-thiouridine(8)-synthase-ThiI
MKFIIKLFPEITIKSQSVRLRFIKILTTNIRNVLKNLEDDTLAVVRHWDHIEIRTKDDNLGPVICDALTRVPGIHHILEVEDRSYTDMHNIFEQTLEAYRETLIGKTFCVRVKRRGKHEFSSGDVERYVGGGLNQHIESAKVKLSHPQVTVHLEVDQDKLTLIKARHEGLGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGSAHEIGVKQVAHYLWSRFGSSHRVRFVAIDFEPVVGEILEKVEDGQMGVVLKRMMVRAASQVAERYGVQALVTGEALGQVSSQTLTNLRLIDNASDTLILRPLISHDKEHIINLARHIGTEDFAKTMPEYCGVISKSPTVKAVKAKIEEEESHFDFSILDRVVSEAKNVDIREIAEQSREQVVEVETVAELADTDVLLDIRAPDEQEEKPLKLDGIEVRALPFYKLSSQFADLDQSKSYLLYCDRGVMSRLQALYLREQGYTNVKVYRP
>NZ_CP027397.1|WP_005182160.1|2153166_2153421_+|exodeoxyribonuclease-VII-small-subunit
MPKKAATPETKATSFETSLSELEQIVTRLESGELPLEEALNEFERGVQLARQGQQTLLQAEQRVQVLLSDDVDAPLAPFTPDAE
>NZ_CP027397.1|WP_042569278.1|2153425_2154346_+|(2E,6E)-farnesyl-diphosphate-synthase
MSIAHSSADFQQQLAAHQQRVNQALLDFIAPLPFGDSDLVAAMRYGAVLGGKRLRPYLVYATGQMFGLSLTNLDAPAAAIECIHAYSLIHDDLPAMDDDDLRRGQPTCHVKFGEANAILAGDALQTLAFSILAEANMPDVANKDRLSMIAELAKASGVAGMCGGQALDLEAEARQISLTNLEQIHRYKTGALIRAAVRLGALAAGAPGRSALPLLDRYSEAIGLAFQVQDDILDVIGDTATIGKRQGSDQQLGKSTYPALLGLDNAKAKALDLYQEALSALNALSEQSYNIAPLQALACFIIERDN
>NZ_CP027397.1|WP_050297417.1|2154469_2156329_+|1-deoxy-D-xylulose-5-phosphate-synthase
MSLDIAKYPTLALAQNPEELRMLPKESLPKLCDELRQYLLASVSRSSGHFASGLGVVELTVALHYVYKTPFDSLVWDVGHQAYPHKILTGRREQIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGLGMAVAAEREGKGRRTVCVIGDGAITAGMAFEAMNHAGDIHSDMLVILNDNEMSISENVGGLNNHLAQLLSGKLYASLREGGKKAFSGLPPIKDLLKRTEEHLKGMVVPSTLFEELGFNYIGPVDGHDVQALAQTLKNMRDLKGPQLLHIMTKKGKGYAPAEKDPIGWHAVPKFDPAAGTLPKSQGNLPTYSKIFGEWLCETAAKDSQLMAVTPAMREGSGMVRFSREYPQQYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMTPSDENECRQMLHTGYHHNGPAAVRYPRGNGTGADLKPLEIMPIGKGIVRREGEKIAILCFGTLLAQAQLVADNLNATLVDMRFVKPLDEALVLEMAASHEVLVTVEENAIIGGAGSGVNELLMAKRQLVPVLNLGLSDSFVPQGEQEEMRAEFGLDAAGIQRQIEAWLA
>NZ_CP027397.1|WP_032905591.1|2156711_2157209_-|phosphatidylglycerophosphatase-A
MDEAKRRLRLTNPWHLLATGFGSGLSPWAPGTMGSIAAIPFWLLLIQLPWQLYSLAVMFSICIGVYICHRTAKDMQVHDHGSIVWDEFVGMWITLMALPVNHWQWVAAGFVAFRVFDIWKPWPIRWFDRNVHGGMGIMIDDIIAGVIAAAIIFVVGHYWPADLFY
>NZ_CP027397.1|WP_032905590.1|2157201_2158191_-|thiamine-phosphate-kinase
MACGEFDLIARYFDRFRSNRRDVELGIGDDCALLTVAEKQLLAISTDTLVSGVHFLPDIDPADLGYKCLAVNLSDLAAMGADPAWLSLAITLPSINEDWLQAFSDSLFDQLNYYGMQLIGGDTTRGPLSLTLTIQGLVPEGRALTRAGARIGDWIYVTGTLGDSAAGLAILQNVLRVDNETDRSALIHRHLRPQPRVLQGQALRDLASSAIDISDGLISDLQHILKASNCGARIELDALPYSDALTRQVDAEQALRWALSGGEDYELCFTVPEINRGALDVALSNTGASYTCIGQVGPQSEGVKFFREGKAIQLDFRGFDHFSTGKSHG
>NZ_CP027397.1|WP_005182123.1|2158301_2158718_-|transcription-antitermination-factor-NusB
MKPAARRRARECAVQALYSWQLSKNDIADVELQFLSEQDVKDVDISYFRELLSGVAVNATSLDALMAPFLSRQLEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKVAPTVRKKK
>NZ_CP027397.1|WP_005182120.1|2158743_2159214_-|6,7-dimethyl-8-ribityllumazine-synthase
MNVIEGVVATPNARVAIAIARFNNFINDSLLEGAIDALKRIGQVADDNITVVWVPGAYELPLVANVLAKTNRYDAVIALGTVIRGGTAHFEYVAGEASSGLASVAMNSDIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVIKAIKG
>NZ_CP027397.1|WP_050288437.1|2159350_2160460_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MQTDEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALVSAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAVDHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRFRAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEHQVTQQNGLCWLARVEADQQPWPDNVEQLLLPRHGGGVDLVLLMMQLGKRQINSVWVEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFVFSDVRQVGPDLRLRLKPKY
>NZ_CP027397.1|WP_005182112.1|2160518_2160968_-|transcriptional-regulator-NrdR
MHCPFCAAVDTKVIDSRLVSDGSQVRRRRQCLDCNERFTTFEVAELVLPRVVKSDDVREPFNEDKLRRGMLKALEKRPVSSDDVETAISHIKSQLRATGEREVPTKMVGNLVMEALKRLDKVAYIRFASVYRSFEDIREFGEEIARLQD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP027397_2	2.1\|2151199\|56\|NZ_CP027397\|CRISPRCasFinder	2151199-2151254	56	NZ_CP027397.1	2151332-2151387	1	0.982

1. spacer 2.1|2151199|56|NZ_CP027397|CRISPRCasFinder matches to position: 2151332-2151387, mismatch: 1, identity: 0.982

gagcgtacacgtagtacgtgatggcggcgagcactgcgcaagcccagaatggcaaa	CRISPR spacer
gagcgtacacgtagtacgtgacggcggcgagcactgcgcaagcccagaatggcaaa	Protospacer
*********************.**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

92657 : 163628

Pseudomonas_phage(21.43%)

tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050074756.1\|92657_93164_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_042568309.1\|93458_93716_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	2.5e-22	57.8
WP_005192400.1\|93719_94850_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	9.0e-173	79.1
WP_005192398.1\|94942_97228_-	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	6.5e-287	64.1
WP_042568307.1\|97721_98450_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_005192395.1\|98651_101324_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	3.0e-102	34.3
WP_080608165.1\|101437_104305_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	2.0e-43	27.5
WP_005192390.1\|104530_105184_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_042568306.1\|105186_107880_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_005192386.1\|107902_109057_-	MFS transporter	NA	NA	NA	NA
WP_005192384.1\|110083_111190_+	porin OmpC	Q1MVN1	Enterobacteria_phage	5.6e-103	56.8
WP_050296715.1\|111678_111921_-	hypothetical protein	NA	NA	NA	NA
WP_050074759.1\|112405_113998_+	MFS transporter	NA	NA	NA	NA
WP_005192377.1\|114023_115163_+	glycoside hydrolase family 88 protein	NA	NA	NA	NA
WP_050296714.1\|115204_116497_+	glycoside hydrolase	NA	NA	NA	NA
WP_071843581.1\|116676_116760_+	hypothetical protein	NA	NA	NA	NA
WP_080608480.1\|116898_116991_+	hypothetical protein	NA	NA	NA	NA
WP_050074761.1\|117209_117779_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_050074762.1\|118077_119142_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_005192367.1\|119681_120887_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_032907905.1\|121285_121648_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_032907899.1\|122172_122469_+	hypothetical protein	NA	NA	NA	NA
WP_050074765.1\|123123_124134_+	AI-2E family transporter	NA	NA	NA	NA
WP_005192359.1\|124237_124483_-	hypothetical protein	NA	NA	NA	NA
WP_042568297.1\|125343_125895_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_080608166.1\|126210_128754_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_074010376.1\|129003_129915_+	adhesin	NA	NA	NA	NA
WP_125461919.1\|130332_130548_+	hypothetical protein	NA	NA	NA	NA
WP_080608167.1\|130865_132191_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_032907378.1\|132377_132695_-	DUF4387 domain-containing protein	NA	NA	NA	NA
WP_032907376.1\|132691_134065_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA
WP_032907374.1\|134066_135311_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
WP_032907373.1\|135310_136756_-	methylaspartate mutase subunit E	NA	NA	NA	NA
WP_032907371.1\|136770_138162_-	glutamate mutase L	NA	NA	NA	NA
WP_005190158.1\|138158_138605_-	methylaspartate mutase subunit S	NA	NA	NA	NA
WP_005190156.1\|139177_140038_-	GHMP kinase	NA	NA	NA	NA
WP_005190153.1\|140152_140935_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_032907370.1\|141451_142372_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_050074739.1\|142771_144418_+	fumarate hydratase	NA	NA	NA	NA
WP_005190137.1\|144439_145030_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_050297006.1\|145359_146502_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_032907368.1\|146753_148280_-	MFS transporter	NA	NA	NA	NA
WP_080608168.1\|148654_149683_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_050289055.1\|149755_151543_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_050074740.1\|151875_152817_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_005190119.1\|152987_153230_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.7e-25	70.9
WP_042568291.1\|153479_154202_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	6.3e-63	51.1
WP_042568290.1\|154466_154946_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	1.6e-38	61.6
WP_042568289.1\|155208_155487_+	hypothetical protein	H6WRZ3	Salmonella_phage	1.6e-14	47.2
WP_050074742.1\|155488_156004_+	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	1.9e-53	58.4
WP_042568287.1\|156000_156330_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_144405110.1\|156343_156541_+	hypothetical protein	NA	NA	NA	NA
WP_042568286.1\|156638_157169_+	hypothetical protein	NA	NA	NA	NA
WP_071843434.1\|157173_157338_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_042568285.1\|157364_158873_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	3.9e-107	45.8
WP_042568284.1\|158914_159283_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_042568283.1\|159284_159584_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_050074744.1\|159704_161051_+	hypothetical protein	NA	NA	NA	NA
WP_050297010.1\|161154_162561_+	DNA circularization protein	Q8SBG8	Shigella_phage	5.4e-18	32.8
WP_050297011.1\|162557_163628_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	2.5e-39	29.8

DBSCAN-SWA_2

597117 : 653061

Cronobacter_phage(33.33%)

tRNA,tail,terminase,transposase,head,integrase

attL 601136:601152|attR 660251:660267

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080608185.1\|597117_598200_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	9.4e-103	51.0
WP_025378521.1\|598174_598441_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.1e-09	42.9
WP_080608186.1\|598513_599026_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	7.4e-34	45.9
WP_080608187.1\|599022_601116_-	hypothetical protein	H9C157	Pectobacterium_phage	3.4e-93	34.4
601136:601152	attL	NA	NA	NA	NA
WP_125461923.1\|601192_601507_-	hypothetical protein	NA	NA	NA	NA
WP_080608189.1\|601605_601836_-	hypothetical protein	A0A2H4JG91	uncultured_Caudovirales_phage	1.6e-12	43.7
WP_080608190.1\|602053_602389_-	hypothetical protein	NA	NA	NA	NA
WP_105877047.1\|602402_602576_-	DUF1482 family protein	NA	NA	NA	NA
WP_080608191.1\|602615_602852_-	hypothetical protein	NA	NA	NA	NA
WP_080608192.1\|602973_603198_-	hypothetical protein	NA	NA	NA	NA
WP_080608193.1\|603372_603765_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.0e-30	55.4
WP_080608194.1\|603846_604044_+	helix-turn-helix domain-containing protein	H9C161	Pectobacterium_phage	7.1e-09	49.2
WP_080608195.1\|604084_604525_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	1.9e-33	53.1
WP_080608196.1\|604538_604790_+	hypothetical protein	NA	NA	NA	NA
WP_080608197.1\|604782_604971_+	hypothetical protein	NA	NA	NA	NA
WP_080608198.1\|604983_606018_+	hypothetical protein	G9L6A8	Escherichia_phage	1.5e-41	55.3
WP_080608486.1\|606046_606454_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-31	47.2
WP_080608199.1\|606468_606969_+	hypothetical protein	H9C166	Pectobacterium_phage	3.9e-19	44.5
WP_080608200.1\|606965_609131_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.9e-216	50.4
WP_080608201.1\|609277_609460_+	hypothetical protein	NA	NA	NA	NA
WP_080608202.1\|609534_610128_+	DUF1367 family protein	H9C173	Pectobacterium_phage	2.0e-59	56.6
WP_080608203.1\|610136_610421_+	DUF1364 domain-containing protein	H9C174	Pectobacterium_phage	6.1e-38	78.7
WP_080608487.1\|610429_610855_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	2.4e-38	62.5
WP_050297974.1\|611627_612506_+	triacylglycerol lipase	NA	NA	NA	NA
WP_080608204.1\|612702_612822_+	HNH endonuclease	NA	NA	NA	NA
WP_050297973.1\|613058_613385_+	acid-activated periplasmic chaperone HdeA	NA	NA	NA	NA
WP_050297972.1\|613888_614176_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_050287950.1\|614550_614868_+	hypothetical protein	H6WRZ3	Salmonella_phage	9.3e-27	62.1
WP_080608205.1\|614851_615358_+	lysozyme	I6PBN2	Cronobacter_phage	3.4e-47	59.1
WP_050297037.1\|615342_615678_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_050089496.1\|615953_616274_-	hypothetical protein	NA	NA	NA	NA
WP_080608206.1\|616566_616893_+	hypothetical protein	NA	NA	NA	NA
WP_080608207.1\|617061_617664_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-71	73.0
WP_080608208.1\|617663_619145_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.1e-250	83.0
WP_080608488.1\|619189_620632_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.6e-132	55.3
WP_080608209.1\|620633_621533_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-97	59.7
WP_105165836.1\|621569_622313_+	hypothetical protein	NA	NA	NA	NA
WP_080608211.1\|622364_623714_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	9.8e-126	52.9
WP_050287253.1\|623714_624143_+	hypothetical protein	NA	NA	NA	NA
WP_080608212.1\|624153_625236_+	hypothetical protein	A0A125RNM3	Pseudomonas_phage	4.4e-76	43.8
WP_080608213.1\|625246_625531_+	hypothetical protein	NA	NA	NA	NA
WP_080608214.1\|625533_625914_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.2e-26	49.6
WP_080608215.1\|625913_626225_+	hypothetical protein	NA	NA	NA	NA
WP_080608216.1\|626221_626572_+	hypothetical protein	G0ZNE2	Cronobacter_phage	1.8e-26	53.4
WP_080608217.1\|626573_626942_+	hypothetical protein	F1C5E3	Cronobacter_phage	7.7e-41	68.0
WP_080608218.1\|626938_627322_+	hypothetical protein	G0ZNE4	Cronobacter_phage	5.7e-47	68.5
WP_080608219.1\|627346_628096_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	4.0e-52	48.8
WP_080608220.1\|628235_628925_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	3.0e-54	50.9
WP_080608221.1\|628917_632670_+	tape measure protein	A0A1W6JNU2	Morganella_phage	2.2e-159	39.9
WP_080608222.1\|632666_633140_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.6e-46	53.9
WP_080608223.1\|633139_633610_+	DUF1833 family protein	B1GS46	Salmonella_phage	3.0e-37	46.8
WP_080608224.1\|633645_634038_+	C40 family peptidase	F1C5F2	Cronobacter_phage	1.2e-28	43.5
WP_080608225.1\|634024_636520_+\|tail	phage tail protein	A0A1B1W274	Salmonella_phage	4.4e-220	49.1
WP_080608226.1\|636578_638990_+\|tail	tail fiber domain-containing protein	A0A291AXF7	Shigella_phage	2.2e-43	43.6
WP_080608227.1\|639100_640318_-	hypothetical protein	NA	NA	NA	NA
WP_080608228.1\|640670_641297_+	hypothetical protein	NA	NA	NA	NA
WP_080608229.1\|641695_642667_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_080608230.1\|642663_643992_+	ATP-binding protein	NA	NA	NA	NA
WP_080608231.1\|644059_644287_+	hypothetical protein	NA	NA	NA	NA
WP_080608232.1\|644436_644976_-	hypothetical protein	NA	NA	NA	NA
WP_080608233.1\|645070_645421_-	hypothetical protein	NA	NA	NA	NA
WP_080608234.1\|646534_647281_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_050297751.1\|648551_649010_+\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	2.0e-14	34.4
WP_050297750.1\|649209_649734_-	hypothetical protein	NA	NA	NA	NA
WP_050297749.1\|650108_650630_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_050088376.1\|650935_652348_+	hypothetical protein	NA	NA	NA	NA
WP_161597802.1\|652944_653061_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	NA	NA	NA	NA
660251:660267	attR	NA	NA	NA	NA

DBSCAN-SWA_3

721004 : 732334

Anomala_cuprea_entomopoxvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050074088.1\|721004_722531_-	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.3e-12	26.0
WP_005182850.1\|722871_723678_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_005182848.1\|723821_724535_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_032905797.1\|724646_724859_-	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	3.4e-09	43.5
WP_005182845.1\|725311_727240_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.7e-127	36.8
WP_011816226.1\|727243_727795_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.4e-16	33.7
WP_004713020.1\|727890_728088_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004706556.1\|728125_728482_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_005182843.1\|728949_729933_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	38.0
WP_005182841.1\|729946_732334_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.3e-07	25.8

DBSCAN-SWA_4

1280714 : 1314105

Escherichia_phage(39.39%)

tail,terminase,holin,head,integrase,plate,lysis,capsid,portal

attL 1277326:1277376|attR 1314273:1314323

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1277326:1277376	attL	NA	NA	NA	NA
WP_080608265.1\|1280714_1281725_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.1e-116	61.3
WP_080608266.1\|1281734_1282322_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	9.5e-25	35.3
WP_050134119.1\|1282521_1282701_+	hypothetical protein	NA	NA	NA	NA
WP_105165845.1\|1282728_1283250_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	2.3e-22	38.3
WP_080608267.1\|1283250_1283709_-	hypothetical protein	NA	NA	NA	NA
WP_176393549.1\|1283910_1284087_+	hypothetical protein	NA	NA	NA	NA
WP_080608493.1\|1284125_1284593_+	replication protein B	M1SV55	Escherichia_phage	2.1e-43	53.9
WP_192945372.1\|1284666_1284912_+	DUF2732 family protein	NA	NA	NA	NA
WP_080608268.1\|1284923_1285142_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.1e-13	53.5
WP_080608269.1\|1285138_1287409_+	replication endonuclease	U5N0W3	Enterobacteria_phage	1.1e-265	60.2
WP_080608270.1\|1287521_1287716_+	hypothetical protein	NA	NA	NA	NA
WP_080608271.1\|1288171_1289041_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_050162496.1\|1289358_1289613_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_080608272.1\|1289609_1289951_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_192945337.1\|1290752_1293716_+	NACHT domain-containing protein	NA	NA	NA	NA
WP_105165846.1\|1293794_1294814_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	9.3e-153	75.1
WP_080608274.1\|1294813_1296577_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	3.2e-286	80.4
WP_080608275.1\|1296719_1297541_+\|capsid	GPO family capsid scaffolding protein	Q6K1I7	Salmonella_virus	2.5e-92	61.1
WP_080608276.1\|1297562_1298630_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	9.8e-145	72.8
WP_080608277.1\|1298633_1299290_+\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	6.8e-72	67.6
WP_080608278.1\|1299379_1299886_+\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	2.6e-71	78.7
WP_080608279.1\|1299885_1300089_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	8.0e-24	80.6
WP_080608280.1\|1300079_1300301_+	primosomal protein	A0A218M4L5	Erwinia_phage	6.0e-25	71.2
WP_080608281.1\|1300284_1300794_+	lysozyme	A0A218M4K3	Erwinia_phage	9.6e-74	80.2
WP_080608282.1\|1300790_1301216_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.4e-38	65.2
WP_080608283.1\|1301103_1301349_+\|holin	holin	S4TNY4	Salmonella_phage	3.2e-27	78.2
WP_080608284.1\|1301311_1301779_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	7.2e-68	78.7
WP_080608285.1\|1301771_1302218_+	phage virion morphogenesis protein	O80313	Escherichia_phage	2.5e-49	69.2
WP_080608286.1\|1302251_1302917_-	hypothetical protein	NA	NA	NA	NA
WP_080608287.1\|1303034_1303670_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-94	81.5
WP_080608288.1\|1303666_1304014_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	1.7e-42	73.0
WP_080608289.1\|1304018_1304927_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.0e-134	81.8
WP_050162476.1\|1304919_1305525_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	2.0e-86	76.9
WP_080608290.1\|1305529_1306804_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	4.6e-101	44.7
WP_080608291.1\|1306806_1307385_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.4e-43	44.5
WP_080608292.1\|1307514_1308705_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.2e-207	89.4
WP_080608293.1\|1308717_1309236_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.2e-89	92.4
WP_080608294.1\|1309296_1309578_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.6e-33	84.1
WP_071777697.1\|1309610_1309730_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.6e-14	89.7
WP_080608295.1\|1309722_1312167_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.2e-268	69.0
WP_050877693.1\|1312181_1312661_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.9e-71	82.9
WP_080608296.1\|1312660_1313821_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	2.9e-166	78.8
WP_080608297.1\|1313904_1314105_+	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	1.6e-16	63.9
1314273:1314323	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1922416 : 1944413

Proteus_phage(33.33%)

integrase,holin,transposase,protease

attL 1933516:1933530|attR 1954397:1954411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032905703.1\|1922416_1922746_-\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA
WP_105165850.1\|1923124_1924576_-\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_050297884.1\|1924965_1926405_-\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_125461927.1\|1926927_1927167_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_032905700.1\|1927596_1927980_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032905698.1\|1928396_1928702_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_032905696.1\|1928703_1929093_+	M15 family metallopeptidase	A0A2I6PFM8	Proteus_phage	2.3e-35	54.9
WP_125461928.1\|1929218_1929428_+	hypothetical protein	NA	NA	NA	NA
WP_042569345.1\|1929990_1930401_+	hypothetical protein	NA	NA	NA	NA
WP_080608328.1\|1930614_1931865_+	hypothetical protein	NA	NA	NA	NA
WP_005182577.1\|1931939_1933220_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
1933516:1933530	attL	NA	NA	NA	NA
WP_050297886.1\|1933526_1934453_-	transcriptional regulator MelR	NA	NA	NA	NA
WP_050297887.1\|1934723_1936073_+	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA
WP_005182571.1\|1936162_1937584_+	melibiose:sodium transporter MelB	NA	NA	NA	NA
WP_005182570.1\|1937586_1937841_+	SemiSWEET transporter	NA	NA	NA	NA
WP_032905755.1\|1938237_1939791_+	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_032905690.1\|1939762_1940632_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_042569341.1\|1941258_1943547_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.2e-60	31.3
WP_080608329.1\|1943888_1944413_+\|integrase	integrase	A0A0M4R586	Salmonella_phage	1.0e-62	65.7
1954397:1954411	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1950532 : 2039393

118

Salmonella_phage(18.42%)

tail,terminase,holin,plate,head,integrase,lysis,capsid,portal

attL 1991638:1991683|attR 2039425:2039470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080608330.1\|1950532_1950988_+	hypothetical protein	G9L674	Escherichia_phage	1.1e-47	66.0
WP_080608331.1\|1950989_1952021_+	serine/threonine protein kinase	D2X3B9	Enterobacteria_phage	2.4e-84	48.9
WP_192945339.1\|1952024_1952192_+	hypothetical protein	NA	NA	NA	NA
WP_080608500.1\|1952222_1952432_-	fumarate hydratase FumD	NA	NA	NA	NA
WP_080608332.1\|1952532_1953168_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	6.0e-33	42.5
WP_080608501.1\|1953167_1954307_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	3.1e-32	46.2
WP_080608333.1\|1954752_1955349_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	3.0e-34	40.1
WP_080608334.1\|1955345_1956482_-\|plate	baseplate J/gp47 family protein	A0A1E1GE19	Vibrio_phage	1.7e-09	28.0
WP_080608335.1\|1956485_1956923_-	phage GP46 family protein	A0A0C4UR04	Shigella_phage	2.0e-19	45.4
WP_080608336.1\|1956919_1957513_-\|plate	phage baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	2.0e-06	35.2
WP_080608337.1\|1957509_1958583_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	5.0e-40	30.3
WP_080608338.1\|1958579_1959986_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	3.0e-24	28.3
WP_080608339.1\|1960043_1961846_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.1e-23	49.2
WP_080608340.1\|1961963_1962266_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_080608341.1\|1962267_1962642_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_080608342.1\|1962654_1964145_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	6.0e-100	43.3
WP_080608343.1\|1964144_1964336_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_080608344.1\|1964340_1964886_-	ATP-binding protein	NA	NA	NA	NA
WP_050134623.1\|1964882_1965227_-	hypothetical protein	NA	NA	NA	NA
WP_080608345.1\|1965226_1965634_-	hypothetical protein	NA	NA	NA	NA
WP_080608346.1\|1965635_1966682_-\|capsid	major capsid protein	Q6UYI3	Burkholderia_phage	1.4e-39	31.8
WP_080608347.1\|1966791_1967193_-\|head	head decoration protein	A0A067ZIL6	Vibrio_phage	8.2e-12	37.2
WP_080608348.1\|1967192_1967777_-	DNA primase	NA	NA	NA	NA
WP_032898862.1\|1967776_1968634_-	S49 family peptidase	K7P7A7	Enterobacteria_phage	3.0e-51	39.5
WP_080608349.1\|1968630_1970199_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	7.0e-99	38.5
WP_005278866.1\|1970267_1970531_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_080608502.1\|1970539_1972516_-\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	3.1e-136	46.0
WP_005278871.1\|1972487_1973099_-	hypothetical protein	NA	NA	NA	NA
WP_080608350.1\|1973210_1973735_-	HNH endonuclease	A0A1W6DY33	Salmonella_phage	1.7e-33	48.8
WP_080608351.1\|1973811_1974456_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	2.6e-07	30.9
WP_080608352.1\|1974803_1975085_-	hypothetical protein	G8C7W3	Escherichia_phage	3.7e-35	76.3
WP_080608503.1\|1975117_1975618_-	DUF2514 family protein	Q7Y3V2	Yersinia_phage	5.2e-72	86.1
WP_080608353.1\|1975635_1976031_-	M15 family metallopeptidase	K0NZV5	Escherichia_virus	5.9e-39	65.1
WP_050143246.1\|1976020_1976359_-\|holin	phage holin, lambda family	A0A0N7CER3	Salmonella_phage	7.9e-16	47.1
WP_125461930.1\|1976608_1977130_+	hypothetical protein	NA	NA	NA	NA
WP_080608354.1\|1977885_1978302_-	hypothetical protein	NA	NA	NA	NA
WP_050133492.1\|1980144_1980570_-	antitermination protein	S5M7R9	Escherichia_phage	9.5e-35	57.1
WP_105165854.1\|1980831_1981881_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	8.6e-69	50.5
WP_080608355.1\|1981932_1984608_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.4e-232	48.9
WP_032898470.1\|1984604_1985000_-	hypothetical protein	NA	NA	NA	NA
WP_032905637.1\|1985113_1985317_-	hypothetical protein	NA	NA	NA	NA
WP_049602772.1\|1985319_1985490_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_049602771.1\|1985467_1985665_-	hypothetical protein	NA	NA	NA	NA
WP_080608356.1\|1985657_1986452_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	1.2e-41	44.3
WP_080608504.1\|1986444_1986741_-	transcriptional regulator	NA	NA	NA	NA
WP_192945340.1\|1986895_1987090_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_192945341.1\|1987298_1987631_+	hypothetical protein	NA	NA	NA	NA
WP_032898475.1\|1987968_1988481_-	hypothetical protein	NA	NA	NA	NA
WP_049602767.1\|1988589_1988796_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_125461932.1\|1988905_1989874_-	hypothetical protein	NA	NA	NA	NA
WP_005182448.1\|1990285_1991473_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.3e-131	57.0
1991638:1991683	attL	NA	NA	NA	NA
WP_192945342.1\|1991979_1993806_+	acyltransferase family protein	A0A193GZ69	Enterobacter_phage	8.5e-64	31.9
WP_080608359.1\|1993862_1995905_-	hypothetical protein	A0A291AXF7	Shigella_phage	8.4e-44	58.0
WP_080608505.1\|1995962_1998326_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	8.6e-218	49.6
WP_080608360.1\|1998444_1998837_-	C40 family peptidase	F1C5F2	Cronobacter_phage	2.6e-31	46.8
WP_080608361.1\|1998872_1999343_-	DUF1833 family protein	B1GS46	Salmonella_phage	3.0e-37	46.8
WP_080608362.1\|1999342_1999816_-	hypothetical protein	B1GS45	Salmonella_phage	3.2e-47	54.2
WP_192945343.1\|1999812_2002995_-	tape measure protein	A0A1W6JNU2	Morganella_phage	2.4e-154	40.0
WP_080608364.1\|2003106_2003466_-	hypothetical protein	NA	NA	NA	NA
WP_080608365.1\|2003544_2004225_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	1.5e-66	54.4
WP_080608366.1\|2004277_2005021_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	8.5e-55	53.0
WP_077174374.1\|2005077_2005452_-	hypothetical protein	NA	NA	NA	NA
WP_080608367.1\|2005448_2005820_-	hypothetical protein	G0ZNE3	Cronobacter_phage	8.3e-35	63.3
WP_080608368.1\|2005821_2006163_-	hypothetical protein	A0A1B1W262	Salmonella_phage	1.3e-18	48.5
WP_192945375.1\|2006172_2006460_-	hypothetical protein	NA	NA	NA	NA
WP_080608370.1\|2006396_2006567_-	DUF551 domain-containing protein	Q5G8X7	Enterobacteria_phage	3.0e-16	55.6
WP_080608371.1\|2006566_2006965_-	hypothetical protein	G0ZNE1	Cronobacter_phage	1.4e-59	81.8
WP_049556430.1\|2007028_2007214_-	hypothetical protein	Q5G8X9	Enterobacteria_phage	9.2e-11	58.7
WP_080608372.1\|2007224_2008322_-	hypothetical protein	J7I0Q9	Pseudomonas_phage	1.2e-150	71.9
WP_080608373.1\|2008332_2008773_-	hypothetical protein	A0A125RNM2	Pseudomonas_phage	1.6e-40	62.8
WP_080608374.1\|2008772_2010050_-	hypothetical protein	G0ZND7	Cronobacter_phage	9.1e-190	78.3
WP_080608375.1\|2010053_2010977_-\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	3.6e-103	63.9
WP_080608376.1\|2010936_2012307_-	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	8.0e-184	73.1
WP_080608377.1\|2012504_2013824_-\|terminase	terminase	Q5G8Y7	Enterobacteria_phage	3.0e-236	89.7
WP_080608378.1\|2013807_2014275_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.8e-55	72.5
WP_105165857.1\|2014308_2014944_-	hypothetical protein	I6S676	Salmonella_phage	1.8e-85	70.9
WP_192945344.1\|2015127_2015298_-	hypothetical protein	NA	NA	NA	NA
WP_080608379.1\|2015294_2015870_-	hypothetical protein	A0A0H4IQ87	Shigella_phage	3.7e-58	58.8
WP_080608380.1\|2016214_2016400_-	hypothetical protein	NA	NA	NA	NA
WP_080608381.1\|2016415_2016874_-\|lysis	lysis protein	A5LH84	Enterobacteria_phage	9.0e-23	43.3
WP_080608382.1\|2016858_2017371_-	lysozyme	I6PBN2	Cronobacter_phage	1.8e-48	59.9
WP_049528949.1\|2017370_2017652_-	hypothetical protein	H6WRZ3	Salmonella_phage	1.1e-18	54.3
WP_080608383.1\|2018106_2018931_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.0e-72	50.7
WP_080608384.1\|2018927_2019287_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	5.2e-42	69.5
WP_042562425.1\|2019283_2019574_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	5.7e-39	76.8
WP_080608385.1\|2019685_2020354_-	metallophosphoesterase	K7PJY0	Enterobacterial_phage	3.5e-76	62.4
WP_192945345.1\|2020346_2020688_-	DUF2591 family protein	A0A2I7QJ87	Vibrio_phage	2.3e-07	37.0
WP_080608387.1\|2020827_2021211_-	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	1.2e-52	76.9
WP_080608388.1\|2021207_2021645_-	recombination protein NinB	E5AGF7	Erwinia_phage	3.3e-67	83.4
WP_042546561.1\|2021637_2021949_-	hypothetical protein	A0A0A0YR00	Erwinia_phage	6.1e-07	36.6
WP_192945373.1\|2021945_2022236_-	DUF551 domain-containing protein	S4TSR6	Salmonella_phage	7.5e-07	36.8
WP_080608389.1\|2022652_2023003_-	hypothetical protein	Q7Y3W5	Yersinia_phage	1.7e-45	75.2
WP_080608390.1\|2023263_2023458_-	hypothetical protein	NA	NA	NA	NA
WP_080608391.1\|2023457_2024861_-	AAA family ATPase	A0A0N7C224	Escherichia_phage	1.9e-164	61.7
WP_080608392.1\|2024850_2025753_-	DNA replication protein	Q8VNP8	Enterobacteria_phage	1.6e-63	47.2
WP_192945346.1\|2025745_2025907_-	hypothetical protein	NA	NA	NA	NA
WP_080608393.1\|2025919_2026210_-	hypothetical protein	I6RSP4	Salmonella_phage	4.8e-22	61.9
WP_048901721.1\|2026345_2026576_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.0e-06	47.1
WP_080608507.1\|2026734_2027433_+	helix-turn-helix transcriptional regulator	A0A2D1GM27	Escherichia_phage	5.3e-83	63.5
WP_080608394.1\|2027764_2028112_+	hypothetical protein	NA	NA	NA	NA
WP_080608395.1\|2028739_2029102_+	hypothetical protein	NA	NA	NA	NA
WP_050122729.1\|2029151_2029394_+	hypothetical protein	NA	NA	NA	NA
WP_192945347.1\|2029435_2029597_+	hypothetical protein	NA	NA	NA	NA
WP_125461933.1\|2029938_2030253_+	hypothetical protein	A0A2I7RGU7	Vibrio_phage	2.4e-14	42.6
WP_050311065.1\|2031520_2031910_+	hypothetical protein	NA	NA	NA	NA
WP_080608398.1\|2032260_2032509_+	hypothetical protein	NA	NA	NA	NA
WP_080608399.1\|2032480_2033161_+	AAA family ATPase	A0A2D1GLT5	Escherichia_phage	1.8e-91	69.5
WP_080608400.1\|2033157_2033754_+	DUF669 domain-containing protein	K7PHD7	Enterobacteria_phage	2.7e-43	51.6
WP_080608401.1\|2033780_2034047_+	hypothetical protein	NA	NA	NA	NA
WP_080608402.1\|2034086_2034290_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_105165858.1\|2034493_2035000_+	hypothetical protein	A0A0H4ISY5	Shigella_phage	9.7e-10	45.9
WP_080608403.1\|2034999_2035893_+	hypothetical protein	A0A2K9VK66	Klebsiella_phage	4.1e-96	60.4
WP_192945348.1\|2035905_2036139_+	hypothetical protein	NA	NA	NA	NA
WP_080608404.1\|2036135_2036435_+	hypothetical protein	NA	NA	NA	NA
WP_042569889.1\|2036499_2036706_+	hypothetical protein	NA	NA	NA	NA
WP_080608405.1\|2036713_2036932_+	hypothetical protein	NA	NA	NA	NA
WP_080608406.1\|2036928_2037564_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.1e-87	74.0
WP_080608407.1\|2038238_2039393_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	6.2e-161	71.1
2039425:2039470	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2066260 : 2074972

Tupanvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050297437.1\|2066260_2067271_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.5e-83	47.2
WP_050297436.1\|2067330_2068701_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.8e-34	28.7
WP_050297435.1\|2068713_2070111_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.2e-53	31.0
WP_050297434.1\|2070117_2071083_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	8.7e-84	48.9
WP_050297433.1\|2071088_2072207_-	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	3.4e-132	63.6
WP_050297432.1\|2072203_2073280_-	glycosyltransferase	NA	NA	NA	NA
WP_050297431.1\|2073266_2074115_-	alpha-1,2-fucosyltransferase	A0A2H4UUT1	Bodo_saltans_virus	5.0e-11	26.4
WP_080608510.1\|2074111_2074972_-	glycosyltransferase	A0A1V0SAH6	Catovirus	2.2e-09	34.8

DBSCAN-SWA_8

4383095 : 4391229

uncultured_Mediterranean_phage(33.33%)

integrase

attL 4377547:4377561|attR 4396569:4396583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4377547:4377561	attL	NA	NA	NA	NA
WP_072088679.1\|4383095_4383848_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-64	50.8
WP_042568533.1\|4383870_4384497_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-35	51.2
WP_005181658.1\|4384914_4385880_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.3e-07	32.8
WP_005181660.1\|4385934_4386933_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.6e-32	37.3
WP_080608115.1\|4387039_4389601_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.3e-25	24.4
WP_080608116.1\|4389759_4391229_+\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	1.3e-22	27.4
4396569:4396583	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4874098 : 4882958

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050088829.1\|4874098_4874608_+	GNAT family N-acetyltransferase	D0R097	Streptococcus_phage	2.2e-09	29.1
WP_005183665.1\|4874744_4875980_+	alanine transaminase	NA	NA	NA	NA
WP_005183662.1\|4876155_4876680_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	7.6e-26	51.0
WP_098057507.1\|4876738_4876813_-	membrane protein YpdK	NA	NA	NA	NA
WP_005183650.1\|4877321_4877753_-	hypothetical protein	Q7Y3V7	Yersinia_phage	6.7e-28	49.3
WP_050073786.1\|4877849_4878413_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_050073785.1\|4878409_4879024_-	molecular chaperone	A0A077SLS7	Escherichia_phage	1.9e-44	48.7
WP_050073784.1\|4879127_4879904_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	7.8e-43	42.2
WP_005183646.1\|4879905_4880523_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.4e-89	70.2
WP_050296751.1\|4880534_4882958_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.8e-264	55.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection