CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027398	Providencia stuartii strain FDAARGOS_291 chromosome, complete genome	6 crisprs	DEDDh,csa3,cas3,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,c2c9_V-U4,WYL,TnsE_C	1	16	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027398_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_1

1148259-1148526

Orphan

I-F

Consensus_repeat	Method
GTGTACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTGTACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTGTACTGCCGTATAGGCAGCTTAGAAA	CRT

4 spacers

csa3

The CRISPR arrays of NZ_CP027398_1

>merge|NZ_CP027398|1|1148259-1148526|PILER-CR,CRISPRCasFinder,CRT
GTGTACTGCCGTATAGGCAGCTTAGAAATCATGCTGTTGAAGCCAACGAGAAACGTAAAAGTGTACTGCCGTATAGGCAGCTTAGAAAAGAATTAAAAGACACCACTGGTAAATCACTGTGTGTACTGCCGTATAGGCAGCTTAGAAACTAGTAAATCCCGACTGGTGCATGAGTAGCGCGTGTACTGCCGTATAGGCAGCTTAGAAATACAGGAACAGTAACTAAACTTAGGATATAACGTGTACTGCCGTATAGGTAGCCTAAAAA

>NZ_CP027398|1|1|1148259-1148466|PILER-CR
GTGTACTGCCGTATAGGCAGCTTAGAAA	TCATGCTGTTGAAGCCAACGAGAAACGTAAAA
GTGTACTGCCGTATAGGCAGCTTAGAAA	AGAATTAAAAGACACCACTGGTAAATCACTGT
GTGTACTGCCGTATAGGCAGCTTAGAAA	CTAGTAAATCCCGACTGGTGCATGAGTAGCGC
GTGTACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP027398|1|1|1148259-1148526|CRISPRCasFinder
GTGTACTGCCGTATAGGCAGCTTAGAAA	TCATGCTGTTGAAGCCAACGAGAAACGTAAAA
GTGTACTGCCGTATAGGCAGCTTAGAAA	AGAATTAAAAGACACCACTGGTAAATCACTGT
GTGTACTGCCGTATAGGCAGCTTAGAAA	CTAGTAAATCCCGACTGGTGCATGAGTAGCGC
GTGTACTGCCGTATAGGCAGCTTAGAAA	TACAGGAACAGTAACTAAACTTAGGATATAAC
GTGTACTGCCGTATAGGTAGCCTAAAAA

>NZ_CP027398|1|1|1148259-1148526|CRT
GTGTACTGCCGTATAGGCAGCTTAGAAA	TCATGCTGTTGAAGCCAACGAGAAACGTAAAA
GTGTACTGCCGTATAGGCAGCTTAGAAA	AGAATTAAAAGACACCACTGGTAAATCACTGT
GTGTACTGCCGTATAGGCAGCTTAGAAA	CTAGTAAATCCCGACTGGTGCATGAGTAGCGC
GTGTACTGCCGTATAGGCAGCTTAGAAA	TACAGGAACAGTAACTAAACTTAGGATATAAC
GTGTACTGCCGTATAGGTAGCCTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_105874227.1\|1139708_1141109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004922282.1\|1149625_1150549_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181200
NZ_CP027398.1\|WP_004922295.1\|1146007_1147297_+\|arsenic-transporter	unknown	unknown	gnl\|CDD\|185342
NZ_CP027398.1\|WP_004922284.1\|1149027_1149348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_042116859.1\|1144200_1145952_+\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NZ_CP027398.1\|WP_004922246.1\|1159661_1160078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004922304.1\|1143438_1143774_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|236654
NZ_CP027398.1\|WP_014656469.1\|1147307_1147733_+\|glutaredoxin-dependent-arsenate-reductase	unknown	unknown	gnl\|CDD\|182200
NZ_CP027398.1\|WP_004922271.1\|1152067_1152640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004922269.1\|1153697_1155113_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP027398.1\|WP_072502154.1\|1139026_1139635_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_040132271.1\|1150717_1151146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004922301.1\|1143821_1144187_+\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP027398.1\|WP_042116741.1\|1157440_1158871_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP027398.1\|WP_072502450.1\|1160313_1161411_-\|heme-lyase-NrfEFG-subunit-NrfF	unknown	unknown	gnl\|CDD\|182415
NZ_CP027398.1\|WP_105874228.1\|1141187_1141469_-\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP027398.1\|WP_115113469.1\|1147760_1147877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_105874229.1\|1141649_1142876_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP027398.1\|WP_004922288.1\|1148679_1149027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_105874230.1\|1161403_1163284_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|236675

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_004922295.1\|1146007_1147297_+\|arsenic-transporter	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
NZ_CP027398.1\|WP_072502450.1\|1160313_1161411_-\|heme-lyase-NrfEFG-subunit-NrfF	gnl\|CDD\|182415	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional.	1.23541e-77
NZ_CP027398.1\|WP_042116859.1\|1144200_1145952_+\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NZ_CP027398.1\|WP_004922304.1\|1143438_1143774_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|236654	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional.	2.98221e-44
NZ_CP027398.1\|WP_014656469.1\|1147307_1147733_+\|glutaredoxin-dependent-arsenate-reductase	gnl\|CDD\|182200	PRK10026, PRK10026, arsenate reductase (glutaredoxin).	1.56402e-86
NZ_CP027398.1\|WP_042116741.1\|1157440_1158871_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP027398.1\|WP_004922269.1\|1153697_1155113_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.62431e-43
NZ_CP027398.1\|WP_105874229.1\|1141649_1142876_-\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.33181e-45
NZ_CP027398.1\|WP_004922301.1\|1143821_1144187_+\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	7.15471e-61
NZ_CP027398.1\|WP_105874228.1\|1141187_1141469_-\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	6.17531e-14
NZ_CP027398.1\|WP_004922282.1\|1149625_1150549_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181200	PRK08025, PRK08025, kdo(2)-lipid IV(A) palmitoleoyltransferase.	3.83518e-165
NZ_CP027398.1\|WP_105874230.1\|1161403_1163284_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|236675	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional.	0

>NZ_CP027398.1|WP_115113469.1|1147760_1147877_-|hypothetical-protein
MDWFCVPCHDDFTNNQKYCLTCHKGIWSIPTKNVADKH
>NZ_CP027398.1|WP_014656469.1|1147307_1147733_+|glutaredoxin-dependent-arsenate-reductase
MNEITIYHNPNCGTSRNTLAMIRNSGIEPAIIHYLETPPSRDVLVKLIADMKITVRALLRKNVEPYEQLNLEQDSYTDDQLIDFMLQYPILINRPIVVTPLGVKLCRPSEVVLDILPNQQQNEFIKEDGEVVVDKQGCRIK
>NZ_CP027398.1|WP_004922295.1|1146007_1147297_+|arsenic-transporter
MFIAALIFVLTITFVIWQPKGLGIGWSATVGAVLALIFGVISFQDIPIVWNIVWNATATFVAVIIISLLLDESGFFEWAALHVAKWGGGKGRLLFSYIVLLGATVAALFANDGAALILTPIVIAMLLALGFNKGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFNIGFTEYASIMVPVDIAAIIATLVMLHWFFRKDIPKQYDMTKLSEPALAIKDMTTFKAGWLVLVLLLIGFFVLEPLGIPVSAIAAIGALILWVIAARGHTINTKKVLRGAPWQIVIFSLGMYLVVYGLRNAGLTDYLSETLNYLADKGLWVATLGTGFITAFLSSIMNNMPTVLIGALSIEGSEASGVIQQAMVYANVIGADLGPKITPIGSLATLLWLHVLSQKNMTITWGYYFKTGIIMTIPVLIVTLVALVLRLSLLN
>NZ_CP027398.1|WP_042116859.1|1144200_1145952_+|arsenical-pump-driving-ATPase
MNFLDSTPNYLFFTGKGGVGKTSISCATAIKLAEEGKKVLLVSTDPASNVGQVFSQSIGNNIQPITLVPNLFAIEIDPQAAAEEYRNKIINPIKESLPEAVIQSITEQLSGACTTEIAAFDEFTGLLTNTEITRQFDHIIFDTAPTGHTIRLLQLPSAWSDFISDNPDGATCLGPMSGLEKQREQYSMAVQALSDNSLTRLVLVARPQSAALREVARTYSELSSLGIKNQQLIINGVFPETAMTENDKLSHALYSREQAALKSLPEALRSLPIDILYLQNINMVGVDALKQLLSNDMPQFSTITPTKQPISLPSLSELVGEISQQQHGLIMLMGKGGVGKTTIAASIAVKLAEKGLDVHLTTSDPAAHVESTLDGVLPNLQVSRIDPIAETERYRNYVLETKGKDLDAEGRALLEEDLRSPCTEEIAVFQAFSRIIRDAGKRFVVMDTAPTGHTLLLLDATGAYHKEIAKKMGKKGHFLTPMMQLQDPERTKVIITTLAETTPVLEAENLQNDLIRADIHPWAWVINNSLSITETTSPLLLSRAEQEVVQIEKVASTLAKRVAIVPLLETEPVGISALSQLAE
>NZ_CP027398.1|WP_004922301.1|1143821_1144187_+|arsenite-efflux-transporter-metallochaperone-ArsD
MKKLEVFDPALCCSTGVCGTEVDQALVDFATDADWLKKQGANVKRFNLAQEPMAFVNNIKVKTFLETAGAESLPLFILDGEIVLTGRYPKRHELARWFGIRLNIEKVETVKSCCGNDKTCC
>NZ_CP027398.1|WP_004922304.1|1143438_1143774_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MEPLQLFKILGDQTRLDIVLLLKASGELCVCDIYTALNLSQPKTSRHLAMLREAGLLLDSKHGKWVHYRLSPALLPWVKSIIDVTYATEKNRVADLLKSLEKKESANRCSI
>NZ_CP027398.1|WP_105874229.1|1141649_1142876_-|site-specific-integrase
MASILLTDSKIRGLKPKKSAYYTWQASATRGTGRLGVKTYPSGRKVFVYRYFKDGKEKFISLGDYPNLSLADAAVKSVAAAAESSSPEKIKYEHATVKQLFDDYIEDQKRQGKRSYDKTQNRLNQVLESKHINPSMAAKDVTPDHIKRILSEFINRGALAGSNKVRANLHAVFNFGLFADNDPAKINERVIYGLDRNPVAAVPRQKGADKALDRFLSWDELKHLLELFNKPSNECPINPDYARLFLFCVYVAGQRPWEIIANTRDNFDKNNNTLTIPPHISKTGDYHVVPLVQPAIDILNIQELLYPESKFLFPSNTKEGHLLTDEFAKQLNKFCKSTGFEKFTPRDIRRTFKTLAGEMGISSEMRDLVQNHKRPGVSKKHYDRYDYLKEKREVLDAWNEKLFSLFDE
>NZ_CP027398.1|WP_105874228.1|1141187_1141469_-|DinI-like-family-protein
MVNIKIRLELNMKGKLPIGTFQALQAQVEKRLKNKYPELNVDIGWGAHTSLNIDGLKKNEKKDYIEEVLQEIWEDDSWLPEGNQTEDIEYFDK
>NZ_CP027398.1|WP_105874227.1|1139708_1141109_+|hypothetical-protein
MYNTGTVTTTANSTKLIGTNTKWKDNNSRVSAEQVILIQNGATIYINSIASIQSNTEITLSFPVPASVSNAPYQILTTMVNSVSDAANKIVAMNVSNVQFSDILNRWATESGTITVTLPDGTTQQLRTAKEMDKLLDGKASLDSSGIQSFKKEIRNKEAIGVWSADGKQVLMLSLARGTPDIYYRIDGVTYNINLPSSSGTLMRVGQYGFGGSGEALSMNEQEMISYYKSKDRVSHIFRNSASETPYHFTYGATAFFKAGDTYTAISADYTGKGVRAIGGNANKFFDYNIWTDRNTTKDANGNLKAASPIVKVFADHIELNEESEGVEMEHLGVGHYLIKGVVGFNSDGAWGINNGFVIPQDHNGKNMVLIDYEVRPDGDIEVFVFHQQNADLPEHFQNKRIKYIDKDGNPVYYENYEPCDVPESRWIDMRVEMPVNSIYNLKKAEAERLAKEEAERQAEEEAVER
>NZ_CP027398.1|WP_072502154.1|1139026_1139635_+|hypothetical-protein
MIGLEIFNGKGDLQLRDDLETMCLHRKVEDFELGLEERILFPTVNTLNGSYSVAPISKVDYPKSGAGLEIFGADGKIKFSSLAKFISFAGEYNVTWENTGTGEFRFNGISGHRYGWIQQQGDRYLHYRNIRRYLDPFDFEYYYEADVYSEGYSYVDDKDGLTIKYIYEFIAHIDSYIDTPPSREGTGRFLQGIIIDISMLDT
>NZ_CP027398.1|WP_004922288.1|1148679_1149027_+|hypothetical-protein
MKLLNKTIYTLIVAFISTAAMAEECIGDSTYQACTRSSTNAQGDNIIESYDTEGNSYSITSGSRDYADGSSEVFSVDSEGNEYSIKSWCDSSGCHTSDSEGNTCTITNTGEMIGC
>NZ_CP027398.1|WP_004922284.1|1149027_1149348_+|hypothetical-protein
MIKKILIIFIVLISAISVFAYNKLTIFTVQPIGAIPDGVTVVMWKKGDMRFFESPDGLCMQRVGKVNLLCRMTMLGSAIDKDNIIIRLPYSEYAYLKSTNGRKFDR
>NZ_CP027398.1|WP_004922282.1|1149625_1150549_+|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MYAKNLFSLKLLHPKYATTWLGIVILFLLVQLPYKWLVRLGAFLGVNSKYFIKRRVSIIKRNLELCFPNKNRKEIDDLVIENLRSLGIALFETGIAWFWSDKRIKKLFQVKGISNYQEAIAKNKGVIIVGVHFMSLELGGRIMGLCFPVNAMYRPHNNKAMEYIQTKGRCRSGKGMIDRKNLRFMVQELKSGKAIWFAPDQDFGRKGTVFAPFFSVKNTSTSKGTSMLAQLSHSPTLTVTLLRNRNGISYDLVLGKEIVNYPTSDTLHDAATINSVLEKEIMKAPEQYLWAHRRFKTRPDGEPSLYI
>NZ_CP027398.1|WP_040132271.1|1150717_1151146_-|hypothetical-protein
MPISVNSYLKYYPSFLLSDLSLTLDSYKQGTNMGVSIYYSATKKTPFNFEEKNTFETMVNQLNQAFPYKEDAETLYFYEEPSDQFLLQGSTKLPLDDESILLESIDYWLDCLSQLTLAFSTAQWSVSIEDSEATWVDDHWEM
>NZ_CP027398.1|WP_004922271.1|1152067_1152640_+|hypothetical-protein
MKKHIFSITVLSAATLLVTGCSSNNDMWGEFANILSDANPVVQESEEWEAYSIKTTQQGVTYASASSADQQFVSKKMDAEYADALYRVSSPFARSDKTKEQLAKDNQGYRFKYNEIMVVKDKKTANTIGYCVNYDSDQIENGQVKPVKEKDKIRNHFIYVDKVKPLSVMTVGSDFTKVMCGEEFYNKYKK
>NZ_CP027398.1|WP_004922269.1|1153697_1155113_+|FAD-binding-oxidoreductase
MAITRRKFLIGGAVVAVAGGAGILTPMLTREGRFVPGTPRHGFVEGTAGPLPKQADVVVIGAGILGIMTAINLVERGLSVVIVEKGNIAGEQSSRFYGQVITYKMPDETFLLHHIGKQRWREMNAKVGVDTSYRTQGRVEVPLDEEDLDHVRKWIDTRSKNVGSDIPFKTRIIEGDELNQRLRGATSNWTIAGFEEDSGSLDAEIATFVMAEYAKKIGVKIYTNCAARGLETQAGAISDVVTEKGAIKTSRVVVAGGVWSRLFMQNLNVDVPTLPAYQSQQLISGSPTAPGGNVALPGNIFFREQADGTYATSPRVIVAPVVKESFIYGYKYLPLLSMPDFPVHISLNEQLINSFTQPTHWELDEVSPFEKNRNMTALPDIPELNSSLEKLKAEFPAFKDSKLIDQWSGAMAIAPDENPIISQVNEYPGLVINTATGWGMTESPVSSEITADLLLGKEPSLDVKPFSLYRF
>NZ_CP027398.1|WP_042116741.1|1157440_1158871_+|6-phospho-beta-glucosidase
MPGSLFPQDFLWGGAIAANQAEGACFEGGKGLSIADVIPYGANRHPVKMGIEKRFKLRDDEYYPSHLAIDFYHQYKRDIALMAEMGFSVFRTSIAWSRLFPRGDEVTPNPEGIAYYLDLFNECKKYHIEPLVTLCHFDVPMHLVTEYGSWRDRKMIDFFVTYAKACFEAFDGIVKYWLTFNEINLLLHTPFSSSGLVFEEGENSEQVKYQAAHHQLVASALATKIAHEVNAQNQVGCMLAGGGYYPWSPKPEDIWAAMEKDRENLFFIDVQVRGYYPAYAQRVFRENKVTLLVTEEDEQILKNTVDFVSFSYYASRCASADMGDGTNPSINAAQSLSSPYIKQSEWGWGIDPLGLRLTANMLYDRYQKPLFLVENGLGAHDKLNEDGEIIDDYRIDYHRSHIQALGDAIADGIPIMGYISWGCIDLVSASTGEMSKRYGFVYVDKDDQGAGSLTRIRKKSFWWYKKVIASHGNDLY
>NZ_CP027398.1|WP_004922246.1|1159661_1160078_-|hypothetical-protein
MKKNIFSYLIIALIAGGSFVAGMMANYTPDLDIVKKSQKAVEDFLTFPETAEYKNVHYYEIRQTLDHGILGYVCGEVLVFKSENSFGYKRFLVKTYMHQDGRNVVSIPLIERSGNIFPNDNFNIIWDQFCREQSDKKE
>NZ_CP027398.1|WP_072502450.1|1160313_1161411_-|heme-lyase-NrfEFG-subunit-NrfF
MNKLLHYVVLTLLLMATNIAKADIVDTWQFATAEQQTTSLQIAAQLRCPQCQNQNLLESNAPTAVSMRHQVYKMVAEGKTEAEIRSYMTERYGDFVLYNPPLHMGTIVLWSQPFIGFIFVIALLYYLIKKRASVPRTNQHNSTEAIITPTSKLSIQLTHEIPSQHAEVKRNDTLSYYAIHLCVALLLLLTIAGYFFLPRFSATYHEYQRISDPLHILTPLQQQQSDLIRLQNNIRQSPQNGDLWAILGEYYLYQNSYDNALIAYNQALKYTGENAQLYSAIATVLYYQAGQQMTEDTMQVIEYALSIDKHEVTALMLLASDAFMHANYEKAISLWQQLLDSNSPRINRSQLIEAINMATIMKNNH
>NZ_CP027398.1|WP_105874230.1|1161403_1163284_-|heme-lyase-CcmF/NrfE-family-subunit
MELILPEIGFISLLLTLCITNFHALFGLVSTYKHTQKSRLLGVYWSTLQFIFLVIAFLCLTISFIQSDFSVVYVAQHSHRLSPLLIKIAAVWGGHEGSLLLWVLLLSTWHLLFAWRYRKQDHPFFALTLAILAAMSAALLWFIVLYSDPFMRIFPPAIEGRDLNPMLQHWGLILHPPLLYLGYSGLMVVTSCVLASLIAGNFSQTIAWVCWRWAVPSWCILTMGITLGSWWAYSELGWGGWWFWDPVENASLLPWLAATALLHSLAASRKQGSYRHWSMILAIVTFILSLLGTLIVRSGILVSVHAFALNNVRAIPLFLLFISMSIVALLIYGCKAKPAASASKRALTLREIYLQMTLILFVVVLFIVLVGTLYPMLYSLLGWGNISVGAPYFNQTLLPFGLIMLMVIGAWAVGSLKSSTRSFFRWRLSVSIIAAVIALLLRWSDAKFIASATAIMVGLLLLLWLRPLNEIQKRLASLLAHTGVIIFATGIAFSTVSKQEISANMTVNHTVSLAGYQFNFKQLQLDTQSNYTTEKALIAVYQKDTFITHLETERRFYTARQQIMIEPGMHWGWMRNWYAVLGEKTGNNRYALRFYVQDGIQWIWGGAFIMCIGLFIGWFKGRSQHE

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Crispr_ID: NZ_CP027398_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_2

2509285-2509734

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT

7 spacers

The CRISPR arrays of NZ_CP027398_2

>merge|NZ_CP027398|2|2509285-2509734|PILER-CR,CRISPRCasFinder,CRT
TTTTTAAGCTGCCTATACGGCAGTGAACTATGACGCAAGAAGATGCTGCTGCGTGGATCATTTTCTAAGCTGCCTATACGGCAGTGAACGTCATCAAGCACCAGTAAATCAACCTCACACATTTCTAAGCTGCCTATACGGCAGTGAACAACTTGCTATCGAAGTCAGAGAGGGTAATGGCTTTCTAAGCTGCCTATACGGCAGTGAACCCCTTTTCAAGCAAATGCTAGAAATGGAGTTATTTCTAAGCTGCCTATACGGCAGTGAACGGCTTTGCTGCGTATGTTTGATGCTGCTTGGTTTTCTAAGCTGCCTATACGGCAGTGAACAATCTTGAATTGTTATACTTCCGCTAGCATCGTTTCTAAGCTGCCTATACGGCAGTGAACAAAAATGAATGCTGTAATTTCAAATATTCGTCATTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|2|2|2509285-2509734|PILER-CR
TTTTTAAGCTGCCTATACGGCAGTGAAC	TATGACGCAAGAAGATGCTGCTGCGTGGATCAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTCATCAAGCACCAGTAAATCAACCTCACACA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AACTTGCTATCGAAGTCAGAGAGGGTAATGGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCCTTTTCAAGCAAATGCTAGAAATGGAGTTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGCTTTGCTGCGTATGTTTGATGCTGCTTGGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATCTTGAATTGTTATACTTCCGCTAGCATCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAAATGAATGCTGTAATTTCAAATATTCGTCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|2|2|2509285-2509734|CRISPRCasFinder
TTTTTAAGCTGCCTATACGGCAGTGAAC	TATGACGCAAGAAGATGCTGCTGCGTGGATCAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTCATCAAGCACCAGTAAATCAACCTCACACA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AACTTGCTATCGAAGTCAGAGAGGGTAATGGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCCTTTTCAAGCAAATGCTAGAAATGGAGTTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGCTTTGCTGCGTATGTTTGATGCTGCTTGGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATCTTGAATTGTTATACTTCCGCTAGCATCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAAATGAATGCTGTAATTTCAAATATTCGTCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|2|2|2509285-2509734|CRT
TTTTTAAGCTGCCTATACGGCAGTGAAC	TATGACGCAAGAAGATGCTGCTGCGTGGATCAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTCATCAAGCACCAGTAAATCAACCTCACACA
TTTCTAAGCTGCCTATACGGCAGTGAAC	AACTTGCTATCGAAGTCAGAGAGGGTAATGGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCCTTTTCAAGCAAATGCTAGAAATGGAGTTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGCTTTGCTGCGTATGTTTGATGCTGCTTGGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AATCTTGAATTGTTATACTTCCGCTAGCATCG
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAAAATGAATGCTGTAATTTCAAATATTCGTCA
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_004918937.1\|2500182_2500614_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_072502195.1\|2515026_2515521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_036943816.1\|2505982_2506732_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP027398.1\|WP_072502198.1\|2504454_2505915_-\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NZ_CP027398.1\|WP_004918896.1\|2513049_2513277_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP027398.1\|WP_072502199.1\|2501437_2504437_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP027398.1\|WP_036943812.1\|2508582_2509056_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP027398.1\|WP_004918906.1\|2511560_2511725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_072502200.1\|2495976_2497446_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143432
NZ_CP027398.1\|WP_014658149.1\|2516374_2517025_-\|DUF4431-domain-containing-protein	unknown	unknown	gnl\|CDD\|373092
NZ_CP027398.1\|WP_036943825.1\|2497514_2499158_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|180820
NZ_CP027398.1\|WP_105874254.1\|2512013_2512661_+\|lytic-polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|237309
NZ_CP027398.1\|WP_004918913.1\|2508091_2508457_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP027398.1\|WP_053110723.1\|2513852_2514632_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|177010
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP027398.1\|WP_072502197.1\|2510681_2511224_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP027398.1\|WP_036943823.1\|2499215_2499554_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_053110717.1\|2500633_2501389_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP027398.1\|WP_004918910.1\|2510197_2510494_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	unknown	unknown	gnl\|CDD\|226000

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_036943812.1\|2508582_2509056_-\|membrane-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	0.00396084
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	3.2937e-165
NZ_CP027398.1\|WP_036943816.1\|2505982_2506732_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	4.16213e-05
NZ_CP027398.1\|WP_004918896.1\|2513049_2513277_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.29088e-06
NZ_CP027398.1\|WP_072502199.1\|2501437_2504437_-\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.08098e-18
NZ_CP027398.1\|WP_072502198.1\|2504454_2505915_-\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	4.19778e-39
NZ_CP027398.1\|WP_105874254.1\|2512013_2512661_+\|lytic-polysaccharide-monooxygenase	gnl\|CDD\|237309	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA.	1.57637e-84
NZ_CP027398.1\|WP_072502200.1\|2495976_2497446_+\|aldehyde-dehydrogenase	gnl\|CDD\|143432	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.	0
NZ_CP027398.1\|WP_014658149.1\|2516374_2517025_-\|DUF4431-domain-containing-protein	gnl\|CDD\|373092	pfam14485, DUF4431, Domain of unknown function (DUF4431).	3.0978e-14
NZ_CP027398.1\|WP_036943825.1\|2497514_2499158_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|180820	PRK07064, PRK07064, thiamine pyrophosphate-binding protein.	0
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.75378e-75
NZ_CP027398.1\|WP_004918913.1\|2508091_2508457_+\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.16602e-22
NZ_CP027398.1\|WP_053110723.1\|2513852_2514632_-\|elongation-factor-Tu	gnl\|CDD\|177010	CHL00071, tufA, elongation factor Tu.	4.04022e-08
NZ_CP027398.1\|WP_072502197.1\|2510681_2511224_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	7.77761e-34
NZ_CP027398.1\|WP_053110717.1\|2500633_2501389_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	2.92743e-22
NZ_CP027398.1\|WP_004918910.1\|2510197_2510494_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	4.55236e-22

>NZ_CP027398.1|WP_036943812.1|2508582_2509056_-|membrane-protein
MNKLFRMCNLLLLTASFSMVSLSSYADPNGGHGHGQGKEHQKNKPNKGHNGNGKEKADHLSLNKSNSISVSLTYNEARALALDSGITGYHALPPGIAKNLARGKPLPPGIAKKVVPPSMLVQLPHYPGYEWSIVGNDLVLIALSTAVVTSIINNVFD
>NZ_CP027398.1|WP_004918913.1|2508091_2508457_+|DUF305-domain-containing-protein
MKKMLPIAAILTISIASFSSFANSNHSMHAQAPASNEMQKELNQSMDKMHADMAKGMNEENADIAFAQGMIAHHLGAIDMAKIELKYGTDPEMRKLAEEIINAQGPEIEQMQKWLEKNKTK
>NZ_CP027398.1|WP_036943816.1|2505982_2506732_-|transferrin-binding-protein-like-solute-binding-protein
MKNLSLTALTIVLSSVAFSTSGETVSGQSQAYDSNGVEVNVGKTQFAQGTHSGVIGDPGVGLKTIANGTRIGFSGFKSLAPENEQGVNVLPASSGGHGGAMGEFHFTQVANAEVYFGDWSKTGSVGDQTHTAFFSGKEATESVPTAGQAEYTIAGINQFDGPGKLSGVFNADFGSKKYTGALNGQSLNITMNGNIQDKGQFSGSAIANGSIQGKSSGQFFGKNADVVAGITTFDSDHTKDTSFGGSKVQ
>NZ_CP027398.1|WP_072502198.1|2504454_2505915_-|DUF560-domain-containing-protein
MGLFRAGILWLLLYSSVAIGEMNDIDNYRFLLKDKAEFSRKSPVIENNKPFIKDDIKINFDGKEYQVSNTLNEMGMAIYIALNRGQYDDVERLLSYYQQLSGYDVLLVEFAKAQMARANHDYAQAIFHYQTILALKPDFLRVELELARTYFEDQQNNEASSQFKRVLEKYQQQLPQSVLATISQFITELSKRNSWSGSFSVGYGYNSNINQVPGDKRQRCYRNAVQQFCYGAGLADKGTKFIYDGDIKRTFSLYQHHSLLFKAYTYGNKYDGAAEYNENTSHIRVYYQYQDAKKSFAIGPISEFKWVGERRHYYGVGVGMEAEYRFLPQFSLSTVIDHQKINYRSPYQSQDGNKSQAYITGIYALSSDAVIFGGVDSGYVNKVYDSDSYKQYGIRGGIFKDVSQYYHLLGIASYKQTRFNAPQYALGSQNRMDDEQLYLAKLSLPKYSIATMTPSISYRYRVNKSNIDALYSYQQSEIEIRLEKRF
>NZ_CP027398.1|WP_072502199.1|2501437_2504437_-|TonB-dependent-receptor
MKIKKIITMNIVTGISLTLISGLVLAKEQEDLGTIIVKDNAETIKERDQKGYDDQYDKNESNIYLGKDLVERYKGTNPADVLNSAVGVYSGDARNSGALDPNIRGIQGQGRVPVTVDGTEQAQTVWRGYNGANNRNYVDPNMISSITIQKSASLNPNVKTSVGGGIAIKTLNIDDVVAPDETFGFDLKLETSSNSTKPRVPNLDYGHDYRDDPAIMDNIKNGNKARMLFNDPGLLVTPKSRGDANFFNFKDNAVRVAVGTRQSRFDIMAAYSYRDQGNYFAGKRGANRYKDDVFSYDPKNPSKPVDPYLPFAANVFAPGKEVTNTSSEMESYLVKTNLFLSDSQKVSLGYTHTTNHYGEIMPSRISFMELDGKVPQWTLAKFNIQAFHADYYLNPEDNPYVNMKLGYWMTKTTSDTNTSGGFPREPKERDMGFEYGWMPRNPNIDGTLVPGASLNSTNKRQGLNLSNQMALTNSLDLTLMGSFSKETVDTEDDIFEYSGSSTSTIFRAVPREGERQENTFAFNFEWRPTDWLNVTAGAQRTSYWSKDHLLDKRRDAKDVNFARPHQLLSKNYDISRTITQNEYDTLTRFTNAEGQKLDDVMDSPYYLERFVEEALNLQKHSLDYAGFRSANGQGEFRIDEKNKAKWRPDGKNKLTRETNPFYNGTIDTKAQTVDPFTGKVVNQYIPNQSRSSDEQEDIRYLSEEERFRHQGKKKAHAWAPSFSASAYLTDNDRVYASYTETVRMPSIFEDTVGFSGSRGYASLTEKFEPERGKTVEVGYVRNLQSLLGAERFADVRINYYHTVIENAFERDIYLKFTQVDKHKTSGIELQARYDNGNYFGDIGLDYRLQNEVCDSASIAALDPTNKFNMSECVDAGFPGGFLRTQLQPKYSINANLGMRFLDERLEIGSRMRYHSRAENNDEKKMMDKYPANYAPLNNSPMRWEPVFVADAYVSYGISDNVKMELLATNILDEYYVDPLTRTMMPAPGRTLRLNFTSHF
>NZ_CP027398.1|WP_053110717.1|2500633_2501389_-|energy-transducer-TonB
MKKTRFLTVTLSVLLHAVIIMGFIHLAQEEKNQQHQAVMDAPVMSIALTHAIEETAPTDSDMTPMVEPEAEIVPPVVVETAQVVLPKKEKKIERPKKKVKEPNKRLSEKKEVEQQKVSTNKITKSAITPQQSQQGETAASSPSMGKVGQPKNGMSNLADTQQINAYREKLRQEVERHKRYPRRAKSMKKQGVAQVQFRLTETGEIMSARIVSSSGSELLDNAALAAVEKSQSVGKPPSGFAHIVTFKIEFK
>NZ_CP027398.1|WP_004918937.1|2500182_2500614_+|hypothetical-protein
MKKYLLPISLFVNVVLLITIIVVGALFFNLKSKIDSTVEQIKNGQYAELVKDNTANLIPEGLKNFKKIEPNQSQCDYFYQQIDSLIGYLEENPTIAGSEKYVKQLNNLKKSAEKTPSTLKETACEKGISTINFIGEKISTATE
>NZ_CP027398.1|WP_036943823.1|2499215_2499554_-|hypothetical-protein
MNKVLFSIIATFFFCSSAVAQSQAHDKVRTHENALIALSFTENSTSQANQIAMARHAEKANIEKPTINGLSKTFSNMDAHEKAATALSFTENSQSYAVQRVINQHMARSQTK
>NZ_CP027398.1|WP_036943825.1|2497514_2499158_+|thiamine-pyrophosphate-binding-protein
MYETITVGEAIARTLEQYQVSTVYGVISIHNLPIADAIGRRGVIDFTPSRGEAGAVTMADAHGRFTGLGVALTSTGAGAGNAVGSMIEAMNACSPIIHITGQVEKAYLDMDAGFIHETRDQLGFLKASSKQAFRVHSAEQAVAVLHKAIQVAQTVPCGPVSIEIPIDIQSAQVPLSLLSAPLTVQPLPEATADQVDAIWQKLQHAQRPLLWIGGGALHASDAIKKLADQGVAVISSTHGRGILSDEHPFSLRAFHNADAIDKLMRSCDITLVAGSRLRSNETKTWSLPLPQPLIQIDIDPLAANRNYRADLVVTADCHSILNALASKLEQAKRTISPQWQQQVQEATQQAEAQLRAQCGPYSQLSDAVEQALPDHGIFVRDITVSGSLWGSRLLKATQPLHNIHSLAGAIGLGLAMAIGSAKANPQTPVIGLVGDGGLMLGIGELATMAQEQLPIVLLIMNDHGYGVMRGIQEKYFADRQYYNELLTPSFTRLAESMGIKALTVDKAEDFKSTLQRAVELKQPVVVEVLMENIGKMNFSGPPQKKLF
>NZ_CP027398.1|WP_072502200.1|2495976_2497446_+|aldehyde-dehydrogenase
MKKLDIFVGGRWQQGRGNEMCSRFPGDQHIVATLNSASVSDVEEAVQAAERAWRAPSWRNMPPHQRATILHNVSMLIEEQADELTRLQTLDNGKPWAEARGLVMSAAATARYFAAVCEVSGGELPPRRQPDMMTLSTYQPLGVIAAITPWNSPIASDMQKIAPALAAGNAVILKPAEATPLISLKLAELFEQAGLPSGLLSVLPGKGSIVGDALVRHPLVKKISFTGGTNTGRQLAHIAAEKLITTSLELGGKSPTIVLEDADLNLAAHGVCYGIFSSMGQACIAGSRLFVSRAVYEPFMQKLTALTQQLIIGDPRQERVHVGPLISPEHRESVIRYVNQAIAEGGTIRLGGAIPQDPNLQAGNYYLPTIIEGLNNQASVCQEEIFGPVLVVIPFDNEAQLIEEANDSIYGLAAGIWTQDYTRAFKLADALDVGTVWINTYKVFSISTPFGGFKESGLGREKGLESLKAYMQQKSIFLALNPQPNRWCE
>NZ_CP027398.1|WP_004918910.1|2510197_2510494_-|antibiotic-biosynthesis-monooxygenase
MLKVIAEDFIQLEAINIVLPLYRELVEATKREPLCIAYDLYVDQKDRGHFIFIEEWPDQAALDAHCKSEHFQRLVPMINQYQRKEPSFIFMDDALAKI
>NZ_CP027398.1|WP_072502197.1|2510681_2511224_+|sulfatase-like-hydrolase/transferase
MPKFIESIDNPAKKKLIVVHLIGSHSPFCKRISNKYDEFYKSKDLSCYVQSIKNTDLQLSLLHDILSKSKNSWSMLYFSDHGLSFIDNQQDLIHGDKHRQNFETPLFITSSDSNTREIISAQRSGLNLFHLLAEWLGIHEKNIQSSCKMISNNECKDQNIAIDFDQKIIYFNELLDDSIK
>NZ_CP027398.1|WP_004918906.1|2511560_2511725_+|hypothetical-protein
MKKLLFIISILCSSAYATNTVTWCSPEPNPVTGKPDCITYTPGMGGIDSGGEGP
>NZ_CP027398.1|WP_105874254.1|2512013_2512661_+|lytic-polysaccharide-monooxygenase
MSEVIMKNLIIPLIYPSILGTVLTLFSFYASAHGYIRMPESRAYLCSFNDYLKEPKTPLNNDCGLGPEYEPQSIETQKGFPESGPPDGLIASGGGIERFSPLDVQTPTRWHKIDMKTGLNTFTWYLTMAHATDNWRFFITKNGWDQSAPLTRSAFELTPFCQRNDHGAMPLIEVDINFICDVPADHEGYHVILATWDVDNTQNAFYQVIDVNLSN
>NZ_CP027398.1|WP_004918896.1|2513049_2513277_+|HEAT-repeat-domain-containing-protein
MNHSRQKIILNTLIQLTQGTNNEVKLTAISILGDYKYAIQNEETLNRLIELCFDPNKEVAITALKSLGKLSIHFQ
>NZ_CP027398.1|WP_053110723.1|2513852_2514632_-|elongation-factor-Tu
MKAIYLLLGLLFSSFAFSAENSVMILGDDYRHTLVKELEGATFVTHGKNDSLIQQVKQAFNQDSIILVINMADGPTQNLRESILIARQSGHNSVQVYYHGKHLPKEMLNDDDFKKLMTLVVKEVNELLDLYEIQITGAYYDWERDFPEKFQLQKNIMAKFSPEPNTLMTEIHSYAYVFTKEEASDNTIITDGTVLAFACQDVIGNATVRSQDPIKRGGNYSHIVLELEKPTLIPLHARCLGTLNNTLAMAFITVLENEK
>NZ_CP027398.1|WP_072502195.1|2515026_2515521_+|hypothetical-protein
MSKFQCSCGHIIRDNTDYLSYKAYYISDQGFYDFLDELEGESRDNFASVAYKYVRDIYQCTKCNNIFIFRGDFFHEFQATQPDSHSLLISNMRDKWPGFLRGYFIKGKGEIYWETNQQSDYLTGLTREQVESTYYHKLNEFQSLGILRDAFLHVDGVMLHEYNR
>NZ_CP027398.1|WP_014658149.1|2516374_2517025_-|DUF4431-domain-containing-protein
MIRLFLFLIFVFPSITYAASFDCAKAQSNVEKLICNTPELSKADDELYVDYLQAKLVTGNSDEFKRLVKKNWELRVKNCDTKSCLLDWYHRSTIIYRNIAASQPVDEQDISEFNYYYNSPVKLRGVIRLEKPDGFLTLRTDNIISVSSKEPEDSEGEPTEWGIGALHLAPRNSDQFNQLKEIQGKKVDITCDLYHATNIHHKTPVLCSVEHYVLVK
>NZ_CP027398.1|WP_072502194.1|2517755_2518751_+|chitinase
MSSDNIINTQVVDDAAAMPDISNKKIMMGFWHNWAAGASDGYQQGQCANMNLTDIPEEYNVVAVAFMKGEGIPTFKPYNLSDAEFRRQVGVLNNQGRAVLISLGGADAHIQLKTGDEDKLTNEIIRLVETYGFDGLDIDLEQTAISSANNKTVLPAALKKVKEHYAAEGKNFIISMAPEFPYLRINGAYLDYINALEGYYDFIAPQYYNQGGDGIWVDETTSGKGAWLSQNSDAMKEDFLYYLTESLVTGTRGYTKIPPSKFVIGLPANNDAAGSGYVIDKQAVYNAFARLDAKNLSIKGLMTWSVNWDNGKSKTGVAYNWEFKTRYAALL
>NZ_CP027398.1|WP_192575767.1|2519829_2521341_-|sulfatase-like-hydrolase/transferase
MNQKIKNVIKSKLILKFISNFLLFSLLHKVMGYPFKPLYVLFISIGLLYVKNRSYRFFVLFFTILAALYLPVGLIYGSPTYNTVASFYYTDIQESREFISNIDSKYYIYSTFILIFGALVSSIKVNAVNYHNKIIFSMVILVFIFTPLKNALSGKYERAANSGTPETRFFTELAYSIYSLIDEIELYTSEDTFEITKVTNQYDIYVIIIGESVRKDFMHAYGFKINNTPFMSSSNGILFTNYISAASSTQPSLTHSLSLYPNIGNNIITLANKAGFNTYWLSNQGFVGEYDGSVAAIGRRANNSFFIKRGGSDDKIISPDTALLPEFKLALESSDHKKLIVVHLMGSHTPFCTRTEGLYDYFYHNKKLSCYVQSIKNTDKLLSEIYHDLSKTKSKWSMMYFSEHALSLTYDRNELVHNDKYQQNYEVPFFITSYDSNKKEIINNRRSGLSFMSLFSQWTGINESNIEKNCDMLSKNDCPNQNTIIDFNKNNRIFDDLPDDYSK

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Crispr_ID: NZ_CP027398_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_3

2515682-2516130

Orphan

I-F

Consensus_repeat	Method
GTGTACTGCCGCATAGGCAGCTTAGAAA	PILER-CR
TTTCTAAGCTGCCTATGCGGCAGTACAC	CRISPRCasFinder
TTTCTAAGCTGCCTATGCGGCAGTACAC	CRT

7 spacers

The CRISPR arrays of NZ_CP027398_3

>merge|NZ_CP027398|3|2515682-2516130|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTATACGGCAGTACACGACCATCACACACAGAGGGCATGTCTTGGGATTTTCTAAGCTGCCTATGCGGCAGTACACGATACCCCGTATTTTCAGCAACCTGTTTTTTATTTCTAAGCTGCCTATGCGGCAGTACACGGAAAATCGTCAGGTGTACCGCTATCAAACAATTTTCTAAGCTGCCTATGCGGCAGTACACATTCGTAAGCTTTCTATCCTGTATATCAATGATTTCTAAGCTGCCTATGCGGCAGTACACATCGCTCATTAAAGTACGATCTCAAATGTGCTTTTCTAAGCTGCCTATGCGGCAGTACACATTCTTGCTGTGTGTATATTTACTCAGTAACATTTCTAAGCTGCCTATGCGGCAGTACACACTGGTTAGCGGGTGATGATTATCAAGCTACCTTTCTAAGCTGCCTATGCGGCAGTACAC

>NZ_CP027398|3|3|2515682-2516130|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTACAC	GACCATCACACACAGAGGGCATGTCTTGGGAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	GATACCCCGTATTTTCAGCAACCTGTTTTTTA
TTTCTAAGCTGCCTATGCGGCAGTACAC	GGAAAATCGTCAGGTGTACCGCTATCAAACAAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCGTAAGCTTTCTATCCTGTATATCAATGA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATCGCTCATTAAAGTACGATCTCAAATGTGCT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCTTGCTGTGTGTATATTTACTCAGTAACA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ACTGGTTAGCGGGTGATGATTATCAAGCTACC
TTTCTAAGCTGCCTATGCGGCAGTACAC

>NZ_CP027398|3|3|2515682-2516130|CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTACAC	GACCATCACACACAGAGGGCATGTCTTGGGAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	GATACCCCGTATTTTCAGCAACCTGTTTTTTA
TTTCTAAGCTGCCTATGCGGCAGTACAC	GGAAAATCGTCAGGTGTACCGCTATCAAACAAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCGTAAGCTTTCTATCCTGTATATCAATGA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATCGCTCATTAAAGTACGATCTCAAATGTGCT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCTTGCTGTGTGTATATTTACTCAGTAACA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ACTGGTTAGCGGGTGATGATTATCAAGCTACC
TTTCTAAGCTGCCTATGCGGCAGTACAC

>NZ_CP027398|3|3|2515682-2516130|CRT
TTTCTAAGCTGCCTATACGGCAGTACAC	GACCATCACACACAGAGGGCATGTCTTGGGAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	GATACCCCGTATTTTCAGCAACCTGTTTTTTA
TTTCTAAGCTGCCTATGCGGCAGTACAC	GGAAAATCGTCAGGTGTACCGCTATCAAACAAT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCGTAAGCTTTCTATCCTGTATATCAATGA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATCGCTCATTAAAGTACGATCTCAAATGTGCT
TTTCTAAGCTGCCTATGCGGCAGTACAC	ATTCTTGCTGTGTGTATATTTACTCAGTAACA
TTTCTAAGCTGCCTATGCGGCAGTACAC	ACTGGTTAGCGGGTGATGATTATCAAGCTACC
TTTCTAAGCTGCCTATGCGGCAGTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_072502195.1\|2515026_2515521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP027398.1\|WP_014658149.1\|2516374_2517025_-\|DUF4431-domain-containing-protein	unknown	unknown	gnl\|CDD\|373092
NZ_CP027398.1\|WP_072502190.1\|2531196_2531382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_081368617.1\|2522064_2522475_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|273687
NZ_CP027398.1\|WP_004918896.1\|2513049_2513277_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP027398.1\|WP_072502188.1\|2531554_2531932_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_036943812.1\|2508582_2509056_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP027398.1\|WP_105874254.1\|2512013_2512661_+\|lytic-polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|237309
NZ_CP027398.1\|WP_072502187.1\|2531949_2532342_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP027398.1\|WP_158514047.1\|2523191_2523839_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP027398.1\|WP_072502191.1\|2530753_2531092_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004918906.1\|2511560_2511725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_004918913.1\|2508091_2508457_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP027398.1\|WP_053110723.1\|2513852_2514632_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|177010
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP027398.1\|WP_072502197.1\|2510681_2511224_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP027398.1\|WP_167537612.1\|2532334_2532646_-\|holin	unknown	unknown	gnl\|CDD\|374352
NZ_CP027398.1\|WP_004918910.1\|2510197_2510494_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP027398.1\|WP_036943816.1\|2505982_2506732_-\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_036943812.1\|2508582_2509056_-\|membrane-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	0.00396084
NZ_CP027398.1\|WP_072502197.1\|2510681_2511224_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	7.77761e-34
NZ_CP027398.1\|WP_014658149.1\|2516374_2517025_-\|DUF4431-domain-containing-protein	gnl\|CDD\|373092	pfam14485, DUF4431, Domain of unknown function (DUF4431).	3.0978e-14
NZ_CP027398.1\|WP_072502187.1\|2531949_2532342_-\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	2.74742e-38
NZ_CP027398.1\|WP_081368617.1\|2522064_2522475_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|273687	TIGR01550, Protein_kinase_doc, death-on-curing family protein. The characterized member of this family is the death-on-curing (DOC) protein of phage P1. It is part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison (e.g. this protein) and a more abundant but shorter lived antidote. Members of this family have a well-conserved central motif HxFx[ND][AG]NKR. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family. [Unknown function, General].	1.94986e-20
NZ_CP027398.1\|WP_004918896.1\|2513049_2513277_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.29088e-06
NZ_CP027398.1\|WP_167537612.1\|2532334_2532646_-\|holin	gnl\|CDD\|374352	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III. Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.	3.36446e-11
NZ_CP027398.1\|WP_105874254.1\|2512013_2512661_+\|lytic-polysaccharide-monooxygenase	gnl\|CDD\|237309	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA.	1.57637e-84
NZ_CP027398.1\|WP_158514047.1\|2523191_2523839_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.46115e-14
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.75378e-75
NZ_CP027398.1\|WP_004918913.1\|2508091_2508457_+\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.16602e-22
NZ_CP027398.1\|WP_053110723.1\|2513852_2514632_-\|elongation-factor-Tu	gnl\|CDD\|177010	CHL00071, tufA, elongation factor Tu.	4.04022e-08
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	3.2937e-165
NZ_CP027398.1\|WP_004918910.1\|2510197_2510494_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	4.55236e-22
NZ_CP027398.1\|WP_036943816.1\|2505982_2506732_-\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	4.16213e-05

>NZ_CP027398.1|WP_072502195.1|2515026_2515521_+|hypothetical-protein
MSKFQCSCGHIIRDNTDYLSYKAYYISDQGFYDFLDELEGESRDNFASVAYKYVRDIYQCTKCNNIFIFRGDFFHEFQATQPDSHSLLISNMRDKWPGFLRGYFIKGKGEIYWETNQQSDYLTGLTREQVESTYYHKLNEFQSLGILRDAFLHVDGVMLHEYNR
>NZ_CP027398.1|WP_053110723.1|2513852_2514632_-|elongation-factor-Tu
MKAIYLLLGLLFSSFAFSAENSVMILGDDYRHTLVKELEGATFVTHGKNDSLIQQVKQAFNQDSIILVINMADGPTQNLRESILIARQSGHNSVQVYYHGKHLPKEMLNDDDFKKLMTLVVKEVNELLDLYEIQITGAYYDWERDFPEKFQLQKNIMAKFSPEPNTLMTEIHSYAYVFTKEEASDNTIITDGTVLAFACQDVIGNATVRSQDPIKRGGNYSHIVLELEKPTLIPLHARCLGTLNNTLAMAFITVLENEK
>NZ_CP027398.1|WP_004918896.1|2513049_2513277_+|HEAT-repeat-domain-containing-protein
MNHSRQKIILNTLIQLTQGTNNEVKLTAISILGDYKYAIQNEETLNRLIELCFDPNKEVAITALKSLGKLSIHFQ
>NZ_CP027398.1|WP_105874254.1|2512013_2512661_+|lytic-polysaccharide-monooxygenase
MSEVIMKNLIIPLIYPSILGTVLTLFSFYASAHGYIRMPESRAYLCSFNDYLKEPKTPLNNDCGLGPEYEPQSIETQKGFPESGPPDGLIASGGGIERFSPLDVQTPTRWHKIDMKTGLNTFTWYLTMAHATDNWRFFITKNGWDQSAPLTRSAFELTPFCQRNDHGAMPLIEVDINFICDVPADHEGYHVILATWDVDNTQNAFYQVIDVNLSN
>NZ_CP027398.1|WP_004918906.1|2511560_2511725_+|hypothetical-protein
MKKLLFIISILCSSAYATNTVTWCSPEPNPVTGKPDCITYTPGMGGIDSGGEGP
>NZ_CP027398.1|WP_072502197.1|2510681_2511224_+|sulfatase-like-hydrolase/transferase
MPKFIESIDNPAKKKLIVVHLIGSHSPFCKRISNKYDEFYKSKDLSCYVQSIKNTDLQLSLLHDILSKSKNSWSMLYFSDHGLSFIDNQQDLIHGDKHRQNFETPLFITSSDSNTREIISAQRSGLNLFHLLAEWLGIHEKNIQSSCKMISNNECKDQNIAIDFDQKIIYFNELLDDSIK
>NZ_CP027398.1|WP_004918910.1|2510197_2510494_-|antibiotic-biosynthesis-monooxygenase
MLKVIAEDFIQLEAINIVLPLYRELVEATKREPLCIAYDLYVDQKDRGHFIFIEEWPDQAALDAHCKSEHFQRLVPMINQYQRKEPSFIFMDDALAKI
>NZ_CP027398.1|WP_036943812.1|2508582_2509056_-|membrane-protein
MNKLFRMCNLLLLTASFSMVSLSSYADPNGGHGHGQGKEHQKNKPNKGHNGNGKEKADHLSLNKSNSISVSLTYNEARALALDSGITGYHALPPGIAKNLARGKPLPPGIAKKVVPPSMLVQLPHYPGYEWSIVGNDLVLIALSTAVVTSIINNVFD
>NZ_CP027398.1|WP_004918913.1|2508091_2508457_+|DUF305-domain-containing-protein
MKKMLPIAAILTISIASFSSFANSNHSMHAQAPASNEMQKELNQSMDKMHADMAKGMNEENADIAFAQGMIAHHLGAIDMAKIELKYGTDPEMRKLAEEIINAQGPEIEQMQKWLEKNKTK
>NZ_CP027398.1|WP_036943816.1|2505982_2506732_-|transferrin-binding-protein-like-solute-binding-protein
MKNLSLTALTIVLSSVAFSTSGETVSGQSQAYDSNGVEVNVGKTQFAQGTHSGVIGDPGVGLKTIANGTRIGFSGFKSLAPENEQGVNVLPASSGGHGGAMGEFHFTQVANAEVYFGDWSKTGSVGDQTHTAFFSGKEATESVPTAGQAEYTIAGINQFDGPGKLSGVFNADFGSKKYTGALNGQSLNITMNGNIQDKGQFSGSAIANGSIQGKSSGQFFGKNADVVAGITTFDSDHTKDTSFGGSKVQ
>NZ_CP027398.1|WP_014658149.1|2516374_2517025_-|DUF4431-domain-containing-protein
MIRLFLFLIFVFPSITYAASFDCAKAQSNVEKLICNTPELSKADDELYVDYLQAKLVTGNSDEFKRLVKKNWELRVKNCDTKSCLLDWYHRSTIIYRNIAASQPVDEQDISEFNYYYNSPVKLRGVIRLEKPDGFLTLRTDNIISVSSKEPEDSEGEPTEWGIGALHLAPRNSDQFNQLKEIQGKKVDITCDLYHATNIHHKTPVLCSVEHYVLVK
>NZ_CP027398.1|WP_072502194.1|2517755_2518751_+|chitinase
MSSDNIINTQVVDDAAAMPDISNKKIMMGFWHNWAAGASDGYQQGQCANMNLTDIPEEYNVVAVAFMKGEGIPTFKPYNLSDAEFRRQVGVLNNQGRAVLISLGGADAHIQLKTGDEDKLTNEIIRLVETYGFDGLDIDLEQTAISSANNKTVLPAALKKVKEHYAAEGKNFIISMAPEFPYLRINGAYLDYINALEGYYDFIAPQYYNQGGDGIWVDETTSGKGAWLSQNSDAMKEDFLYYLTESLVTGTRGYTKIPPSKFVIGLPANNDAAGSGYVIDKQAVYNAFARLDAKNLSIKGLMTWSVNWDNGKSKTGVAYNWEFKTRYAALL
>NZ_CP027398.1|WP_192575767.1|2519829_2521341_-|sulfatase-like-hydrolase/transferase
MNQKIKNVIKSKLILKFISNFLLFSLLHKVMGYPFKPLYVLFISIGLLYVKNRSYRFFVLFFTILAALYLPVGLIYGSPTYNTVASFYYTDIQESREFISNIDSKYYIYSTFILIFGALVSSIKVNAVNYHNKIIFSMVILVFIFTPLKNALSGKYERAANSGTPETRFFTELAYSIYSLIDEIELYTSEDTFEITKVTNQYDIYVIIIGESVRKDFMHAYGFKINNTPFMSSSNGILFTNYISAASSTQPSLTHSLSLYPNIGNNIITLANKAGFNTYWLSNQGFVGEYDGSVAAIGRRANNSFFIKRGGSDDKIISPDTALLPEFKLALESSDHKKLIVVHLMGSHTPFCTRTEGLYDYFYHNKKLSCYVQSIKNTDKLLSEIYHDLSKTKSKWSMMYFSEHALSLTYDRNELVHNDKYQQNYEVPFFITSYDSNKKEIINNRRSGLSFMSLFSQWTGINESNIEKNCDMLSKNDCPNQNTIIDFNKNNRIFDDLPDDYSK
>NZ_CP027398.1|WP_081368617.1|2522064_2522475_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MLNITGKFVAGITYLPVDDLKSINSVLIVLQTLNEPIEVEVLNFNDLSLSQSSSSHVNYYQQTDDMFVLVSSLIKSWIRNHPVANANKRTAMMASCVYLLLNGYELTTPKNEVIEMANGMATKEYSLIELDGWLSF
>NZ_CP027398.1|WP_158514047.1|2523191_2523839_+|CPBP-family-intramembrane-metalloprotease
MDRVLHSLVCVSFFVGWYLIQYALLAFPGITTYNDALAAWPLFTILFILPYSLFSRAYYQKRTELMPFGTVRFSDLRLPIIAMVILSVATMFYGEDETSILEMLTLSPLHQFILVVSVVFAAPIIEEIIFRGFLLNAGMGYGPNGKHVMIIITSVLFAMIHHQYNSPATFIMIFVMSVIFCHVRIQTNSLMAPIILHMINNAVAMLLLFLLNDTP
>NZ_CP027398.1|WP_072502191.1|2530753_2531092_+|hypothetical-protein
MSTNFHLSYTVNVENKRFNDQAASLRSGIEQAFKDDSKNFSDIVKSDEVDTNITGTFSPSGSNSDERKKNAKKLIKSVFSGLMDELEIPSSAITVSCVVTAGTIDNSFEFTI
>NZ_CP027398.1|WP_072502190.1|2531196_2531382_-|hypothetical-protein
MKYYIKLSFLTPSERDIKAIIERVNHELLGKPLNDETAKEARELALKYATDMISVESELTY
>NZ_CP027398.1|WP_072502188.1|2531554_2531932_-|hypothetical-protein
MKFDKSFWLFIMVVILGWWIVAEHDTRIEVQKENKQLRQDNNSLSEIISMQSLQFNRFNQIASVAYRNGIQADTKAQEKIIEYRTILKKESVCDPLVPQHIANGLYEYTNELRFSAMHADTSNIN
>NZ_CP027398.1|WP_072502187.1|2531949_2532342_-|M15-family-metallopeptidase
MSKFKFSKRSEENLRGVHPDLVKVTRRALELTSVDFMVIEGKRNEARQRQLVASGKSQTMNSRHLTGHAVDCAPLVNRDIPWHDWSKFKLVADAMLQAARELGVDLEWGGNWKSFKDGPHFQLTHKSYPA
>NZ_CP027398.1|WP_167537612.1|2532334_2532646_-|holin
MRMPHRDPNNYSWFREVLILLMTMLGVAASYAYKVLNGERFSWRTFILQAIVAVFAGAIVFLASSYYQWVPEIAGGAAGFAGWSGAELIKTIEKRFLRKVSGE

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Crispr_ID: NZ_CP027398_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_4

2535243-2535630

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT

6 spacers

The CRISPR arrays of NZ_CP027398_4

>merge|NZ_CP027398|4|2535243-2535630|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGTTGCCTATACGGCAGTGAACAAACAGCTGGTACCGGTTGCTGATGTGCATTTTTTCTAAGCTGCCTATACGGCAGTGAACGTATGTTAGCCTTTTTTCATCATGCAGATTTCTTTCTAAGCTGCCTATACGGCAGTGAACTACCACGTTCTGTTTATTCGCCCTCATTTGAATTTCTAAGCTGCCTATACGGCAGTGAACGATTTTCATGTTGTTAATACATTCCGATTACTTTTCTAAGCTGCCTATACGGCAGTGAACGGAAAAGAGCGCTTGGCGAAGCAGTCATGTGCTTTCTAAGCTGCCTATACGGCAGTGAACACTTCTTTATCCCGTCCGAATTCTATTTTGTATTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|4|4|2535243-2535630|PILER-CR
TTTCTAAGTTGCCTATACGGCAGTGAAC	AAACAGCTGGTACCGGTTGCTGATGTGCATTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTATGTTAGCCTTTTTTCATCATGCAGATTTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACCACGTTCTGTTTATTCGCCCTCATTTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTTTCATGTTGTTAATACATTCCGATTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGAAAAGAGCGCTTGGCGAAGCAGTCATGTGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ACTTCTTTATCCCGTCCGAATTCTATTTTGTA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|4|4|2535243-2535630|CRISPRCasFinder
TTTCTAAGTTGCCTATACGGCAGTGAAC	AAACAGCTGGTACCGGTTGCTGATGTGCATTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTATGTTAGCCTTTTTTCATCATGCAGATTTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACCACGTTCTGTTTATTCGCCCTCATTTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTTTCATGTTGTTAATACATTCCGATTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGAAAAGAGCGCTTGGCGAAGCAGTCATGTGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ACTTCTTTATCCCGTCCGAATTCTATTTTGTA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|4|4|2535243-2535630|CRT
TTTCTAAGTTGCCTATACGGCAGTGAAC	AAACAGCTGGTACCGGTTGCTGATGTGCATTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTATGTTAGCCTTTTTTCATCATGCAGATTTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACCACGTTCTGTTTATTCGCCCTCATTTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATTTTCATGTTGTTAATACATTCCGATTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGAAAAGAGCGCTTGGCGAAGCAGTCATGTGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ACTTCTTTATCCCGTCCGAATTCTATTTTGTA
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_004918792.1\|2539851_2540538_-\|response-regulator	unknown	unknown	gnl\|CDD\|236538
NZ_CP027398.1\|WP_004918779.1\|2545446_2546919_-\|DUF3999-family-protein	unknown	unknown	gnl\|CDD\|372507
NZ_CP027398.1\|WP_014658106.1\|2537446_2537995_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP027398.1\|WP_072502190.1\|2531196_2531382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_081368617.1\|2522064_2522475_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|273687
NZ_CP027398.1\|WP_014658104.1\|2542027_2543581_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP027398.1\|WP_014658103.1\|2543875_2544292_-\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
NZ_CP027398.1\|WP_167537612.1\|2532334_2532646_-\|holin	unknown	unknown	gnl\|CDD\|374352
NZ_CP027398.1\|WP_004918794.1\|2538052_2539885_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP027398.1\|WP_004918798.1\|2536192_2536363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293741
NZ_CP027398.1\|WP_072502187.1\|2531949_2532342_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP027398.1\|WP_072502191.1\|2530753_2531092_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_014658102.1\|2544978_2545245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_072502188.1\|2531554_2531932_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027398.1\|WP_158514047.1\|2523191_2523839_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	unknown	unknown	gnl\|CDD\|226000
NZ_CP027398.1\|WP_072502186.1\|2540759_2541992_-\|peptidase-T	unknown	unknown	gnl\|CDD\|237371
NZ_CP027398.1\|WP_004918784.1\|2544500_2544905_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP027398.1\|WP_061064141.1\|2533212_2533644_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|341122

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_004918792.1\|2539851_2540538_-\|response-regulator	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.01836e-52
NZ_CP027398.1\|WP_004918779.1\|2545446_2546919_-\|DUF3999-family-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	8.7517e-51
NZ_CP027398.1\|WP_014658106.1\|2537446_2537995_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	4.25255e-102
NZ_CP027398.1\|WP_158514047.1\|2523191_2523839_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.46115e-14
NZ_CP027398.1\|WP_081368617.1\|2522064_2522475_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|273687	TIGR01550, Protein_kinase_doc, death-on-curing family protein. The characterized member of this family is the death-on-curing (DOC) protein of phage P1. It is part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison (e.g. this protein) and a more abundant but shorter lived antidote. Members of this family have a well-conserved central motif HxFx[ND][AG]NKR. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family. [Unknown function, General].	1.94986e-20
NZ_CP027398.1\|WP_014658104.1\|2542027_2543581_-\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP027398.1\|WP_014658103.1\|2543875_2544292_-\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	7.8663e-52
NZ_CP027398.1\|WP_167537612.1\|2532334_2532646_-\|holin	gnl\|CDD\|374352	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III. Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.	3.36446e-11
NZ_CP027398.1\|WP_004918794.1\|2538052_2539885_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP027398.1\|WP_192575767.1\|2519829_2521341_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.75378e-75
NZ_CP027398.1\|WP_072502187.1\|2531949_2532342_-\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	2.74742e-38
NZ_CP027398.1\|WP_004918784.1\|2544500_2544905_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.58541e-26
NZ_CP027398.1\|WP_072502194.1\|2517755_2518751_+\|chitinase	gnl\|CDD\|226000	COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].	3.2937e-165
NZ_CP027398.1\|WP_072502186.1\|2540759_2541992_-\|peptidase-T	gnl\|CDD\|237371	PRK13381, PRK13381, peptidase T; Provisional.	0
NZ_CP027398.1\|WP_061064141.1\|2533212_2533644_-\|YbjN-domain-containing-protein	gnl\|CDD\|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	7.26474e-06

>NZ_CP027398.1|WP_061064141.1|2533212_2533644_-|YbjN-domain-containing-protein
MTSKIYTNENITISSLLDTYREASIDVFRASTDPDVTEMFAIKEFNVPVRVHLHANKEYITLVFIYETSNLINDEQKLRIINQINEECLLIRAYMNEDSAVLIQTDICLVGGIAESNIISTTNLFCMTISNIFNDERTGLLFA
>NZ_CP027398.1|WP_167537612.1|2532334_2532646_-|holin
MRMPHRDPNNYSWFREVLILLMTMLGVAASYAYKVLNGERFSWRTFILQAIVAVFAGAIVFLASSYYQWVPEIAGGAAGFAGWSGAELIKTIEKRFLRKVSGE
>NZ_CP027398.1|WP_072502187.1|2531949_2532342_-|M15-family-metallopeptidase
MSKFKFSKRSEENLRGVHPDLVKVTRRALELTSVDFMVIEGKRNEARQRQLVASGKSQTMNSRHLTGHAVDCAPLVNRDIPWHDWSKFKLVADAMLQAARELGVDLEWGGNWKSFKDGPHFQLTHKSYPA
>NZ_CP027398.1|WP_072502188.1|2531554_2531932_-|hypothetical-protein
MKFDKSFWLFIMVVILGWWIVAEHDTRIEVQKENKQLRQDNNSLSEIISMQSLQFNRFNQIASVAYRNGIQADTKAQEKIIEYRTILKKESVCDPLVPQHIANGLYEYTNELRFSAMHADTSNIN
>NZ_CP027398.1|WP_072502190.1|2531196_2531382_-|hypothetical-protein
MKYYIKLSFLTPSERDIKAIIERVNHELLGKPLNDETAKEARELALKYATDMISVESELTY
>NZ_CP027398.1|WP_072502191.1|2530753_2531092_+|hypothetical-protein
MSTNFHLSYTVNVENKRFNDQAASLRSGIEQAFKDDSKNFSDIVKSDEVDTNITGTFSPSGSNSDERKKNAKKLIKSVFSGLMDELEIPSSAITVSCVVTAGTIDNSFEFTI
>NZ_CP027398.1|WP_158514047.1|2523191_2523839_+|CPBP-family-intramembrane-metalloprotease
MDRVLHSLVCVSFFVGWYLIQYALLAFPGITTYNDALAAWPLFTILFILPYSLFSRAYYQKRTELMPFGTVRFSDLRLPIIAMVILSVATMFYGEDETSILEMLTLSPLHQFILVVSVVFAAPIIEEIIFRGFLLNAGMGYGPNGKHVMIIITSVLFAMIHHQYNSPATFIMIFVMSVIFCHVRIQTNSLMAPIILHMINNAVAMLLLFLLNDTP
>NZ_CP027398.1|WP_081368617.1|2522064_2522475_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MLNITGKFVAGITYLPVDDLKSINSVLIVLQTLNEPIEVEVLNFNDLSLSQSSSSHVNYYQQTDDMFVLVSSLIKSWIRNHPVANANKRTAMMASCVYLLLNGYELTTPKNEVIEMANGMATKEYSLIELDGWLSF
>NZ_CP027398.1|WP_192575767.1|2519829_2521341_-|sulfatase-like-hydrolase/transferase
MNQKIKNVIKSKLILKFISNFLLFSLLHKVMGYPFKPLYVLFISIGLLYVKNRSYRFFVLFFTILAALYLPVGLIYGSPTYNTVASFYYTDIQESREFISNIDSKYYIYSTFILIFGALVSSIKVNAVNYHNKIIFSMVILVFIFTPLKNALSGKYERAANSGTPETRFFTELAYSIYSLIDEIELYTSEDTFEITKVTNQYDIYVIIIGESVRKDFMHAYGFKINNTPFMSSSNGILFTNYISAASSTQPSLTHSLSLYPNIGNNIITLANKAGFNTYWLSNQGFVGEYDGSVAAIGRRANNSFFIKRGGSDDKIISPDTALLPEFKLALESSDHKKLIVVHLMGSHTPFCTRTEGLYDYFYHNKKLSCYVQSIKNTDKLLSEIYHDLSKTKSKWSMMYFSEHALSLTYDRNELVHNDKYQQNYEVPFFITSYDSNKKEIINNRRSGLSFMSLFSQWTGINESNIEKNCDMLSKNDCPNQNTIIDFNKNNRIFDDLPDDYSK
>NZ_CP027398.1|WP_072502194.1|2517755_2518751_+|chitinase
MSSDNIINTQVVDDAAAMPDISNKKIMMGFWHNWAAGASDGYQQGQCANMNLTDIPEEYNVVAVAFMKGEGIPTFKPYNLSDAEFRRQVGVLNNQGRAVLISLGGADAHIQLKTGDEDKLTNEIIRLVETYGFDGLDIDLEQTAISSANNKTVLPAALKKVKEHYAAEGKNFIISMAPEFPYLRINGAYLDYINALEGYYDFIAPQYYNQGGDGIWVDETTSGKGAWLSQNSDAMKEDFLYYLTESLVTGTRGYTKIPPSKFVIGLPANNDAAGSGYVIDKQAVYNAFARLDAKNLSIKGLMTWSVNWDNGKSKTGVAYNWEFKTRYAALL
>NZ_CP027398.1|WP_004918798.1|2536192_2536363_-|hypothetical-protein
MKKSVYKASGLWNQQSFITLFVATSEKDVLSTIAFLANLGGARVDELSIERFCSVH
>NZ_CP027398.1|WP_014658106.1|2537446_2537995_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKLNIPTWLTLFRVILIPFFVLAFYLPVSWGPFVCALIFVIAAVTDWFDGYLARLWKQTTKFGAFLDPVADKVMVATALVLVTESFDVWYVTLPAATMIAREIIISSLREWMAEIGKRSSVAVSWIGKFKTTAQMISLVGLLWRPNLLIENLAIALLYVAAILTFWSMYQYLKAAWSDLSEA
>NZ_CP027398.1|WP_004918794.1|2538052_2539885_-|excinuclease-ABC-subunit-UvrC
MSEQFEPKAFLKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRTNVSSRKTEQLVKNIASIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSKETHPRLSMHRGAKHAKGEYFGPFPNSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVKGLVSDEEYEQQVNYVRLFLTGKDQQVLTGLIERMEKASQALRFEEAARFRDQIQAVRAVTEQQFVSGDSDDLDVIGVAFEAGLACIHVLFIRQGKVLGSRSYYPKIPADTLLEEVVQTFLGQFYLQGSENRTLPGEILLDFALPEKTLLADSLSHIAGRKIQIQTQPRGARARYLKLARTNASTALLTKLAQQSTIHQRMSSLAKTVGLDSIARMECFDISHTMGEQTVASCVVFDKNGPVKSEYRRYNITGITPGDDYAAMHQVLTRRYGKHIDESKVPDIIFIDGGKGQLGQAKDVFNSLDVDWDKNRPLLIGVAKGSDRKAGLETLFFKPEGEGVALPPDSPALHVIQHIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLKNASIEEIAKVPSISYALAEKIYNALKQ
>NZ_CP027398.1|WP_004918792.1|2539851_2540538_-|response-regulator
MINIIIIDNNNILIRGLEAIFSRHKRCHIVASFPLIEQAISWNRQQKASIILINNDNCQFESLKALQTLRRTQPDVGIIIYNIHAHYSFLLKALDLGIQGILSAKIEVNEFLEAIQVVNARSKIISPDIAQSIALKRINQHEQTDLYELLSTRELEIMLLITQGIPTKQIAQVLNLSPKTVNTYRYRMFGKLNIRSDVELTHIAISYGLIVAKQGLLGCQNSLNQKLS
>NZ_CP027398.1|WP_072502186.1|2540759_2541992_-|peptidase-T
MNKLGKQLEQRFFRYLAIESQSDAAATVVPSTEGQRDLAKLLAKELESYGLKEIYIDEHAILYAVRPGNKPSAPKIGFVTHLDTVDVGLSPVIKPQTLKYEGKDLCLNAQEDIWFKASEHPEAAPYIGEEIIFSDGTSVLGADNKAAVTVVMELMDKLQQADFDCGDIYIAFVPDEEIGLRGSKIMDLSRFKVDFAYTIDCCDLGEVVYETFNAASIEVTIKGVTAHPMSAKNVLLNPIRVAHDFIGCFDRFDTPEHTEQREGYFYVTDLVANPDNAKIKMAIRDFDRNSYEARKRYIGEAIELIRARHPRAKIDFKIEDVYSNISDSLGDDRTAIDLIFEALKIQNVEPKVIPMRGGTDGSALSARGVLTPNYFTGALNFHSRFEFLPLSSFEKSYLVSESICRLVGQK
>NZ_CP027398.1|WP_014658104.1|2542027_2543581_-|AbgT-family-transporter
MTTNTLPKKKGFLNRVERIGNVMPDVTMLFIYALIICWFLSYLLSFVDFNYYHPVSKEKITVINMFNYEEIILFITAAVKNFINFPPLGITIVATLGIGIAESSGFINTALKKMLSFITPKMLTPTVVFVGIVSHIASDSAYVILMPVAAMMFYASGRHPLAGIAAAFAGLAGGFTASYTPSIIDPIMQSFTQDAAQMMAPGYSVNVLCNYFFSLGGTFGVIFTCWFITEKIVEPWLNKNCPITTKDVDTDADQDLGKITPLENRAFRVSGLVVLALAAGLFALLWPENSLLRGPDGSLTSPKAPIMQIVVPLLFIFFALPGIVYGYMTKSFTSTKDVVKAMENITKSLIPFIVFAFFAAQFLYSFQHSNLGTLLALSGAELLRTLDMPSGLTVFGVILLTAILNIMITSATSKWAIMAPVLVPMLMAVGISPELTQAAFRVSDSAMNVSTPMFPFYPLILMYCQKYYKNAGIGTLCSMMIPFTVGLLITLTATLYLFWAFDIPIGFDSGYTWQPTP
>NZ_CP027398.1|WP_014658103.1|2543875_2544292_-|phosphate-starvation-inducible-protein-PsiE
MNSMRNMRHASNIAWVLQWVLNIGLIALAIVLVFFLAKETYTMASLMFSGQKEATAYELLEGIVIYFLYFEFIALITKYFLSGYHFPLRYFIYIGITAVIRLIIVDHSDPLTTLLHSAAILVLVVALYIANTEKLKRE
>NZ_CP027398.1|WP_004918784.1|2544500_2544905_-|GFA-family-protein
MYQGQCLCGAVKISTHQPIDKISVCHCGMCQRWNGGPGFSVDCHDDVVIEGEEAVTRFASSQWGERAFCQRCGTHLFYHLHSPSSYYVSAALFEESQHAEMAMQIFVESKPKYYNFIEKTPMLTEQDIMKLMAK
>NZ_CP027398.1|WP_014658102.1|2544978_2545245_-|hypothetical-protein
MRTRFFSKLFIAIALLTSASLFAEAAETVTSYEQVNVKIEHPLKQNKMQDLGDIESMREQAEVRRVELTETTTDRRFNGRQFRIGDKQ
>NZ_CP027398.1|WP_004918779.1|2545446_2546919_-|DUF3999-family-protein
MKLTKSKGKWLTFVYLSFSFLLSSFVHAQEQKALTPYDFYQGIELKYSSDNSSFAWLELPSEAYINSAYPQTLQDVRVFNGTGQEVPSALFYDTEERRKISQVSFALQRLIIRADQVNSKEETHDDQQYLLIETQPSKLTRIELPAMQQAKDAVYQSYLLTRQNNNQEDFPIQTLSLQWMNNQQDWQGKVFIYASDNKQDWVNISAYQPVMSLNSNSGGIYSNTIKLLEGHYVALRAPYLMVIIVAAKETKIPDLTMAQGTSMVVHSTRRQETCHFITNNEGVSLNQLIYRLPSPQPLSAIVIQLRQANRVLPLHIEYTSTSGEEWLPLTNIVAYNQIQNGQEIRNPELVLNDLMVKKLRITALKGSWDDKPPYIEGKRDAVNLMFNVQGASPYLLVWGSQLAGIDNISYQELLGQPLTIDELMHRYPKLYVPEEIIELGGEEQLTSNDFVINEFDWMTITLWVLLGVGIIVLLYFCWYLLKEVNAKSSE

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Crispr_ID: NZ_CP027398_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_5

2608331-2608958

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATNCGGCAGTGAAC	CRT

10 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP027398_5

>merge|NZ_CP027398|5|2608331-2608958|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTATACGGCAGTGAACGGTGTTGCCGCCGCTCGCTTCTTTGGCAATATTTTCTAAGCTGCCTATACGGCAGTGAACCTGGCAAAACGTAAAAATCACCCCACACAAGATTTCTAAGCTGCCTATGCGGCAGTGAACCACATACCGGTGTGAGTAATATCATTATTGCATTTCTAAGCTGCCTATGCGGCAGTGAACATGAAATTATTGGTAACTGGATTTGGATCAGTTTTCTAAGCTGCCTATGCGGCAGTGAACCATACTCCAGCTCAATCCCGTCATAACCACTCTTTCTAAGCTGCCTATACGGCAGTGAACTACAACGCTGTGCAAGACTTCTAGTTGCAATCTTTCTAAGCTGCCTATGCGGCAGTGAACATATCTAATATCCATTATGTAGTTCGGTAACGTTTCTAAGCTGCCTATGCGGCAGTGAACGGCTGTTATCGATTCAAGTTAGCAGAAAAGGATTTCTAAGCTGCCTATACGGCAGTGAACTTTTTCATTTCTTCTCAAGCCGCATGGTTACTTTTCTAAGCTGCCTATACGGCAGTGAACATTAAGAGACCTACGAACCAGCTTTAGGCAAATTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|5|5|2608331-2608958|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTGTTGCCGCCGCTCGCTTCTTTGGCAATAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCAAAACGTAAAAATCACCCCACACAAGA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CACATACCGGTGTGAGTAATATCATTATTGCA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATGAAATTATTGGTAACTGGATTTGGATCAGT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CATACTCCAGCTCAATCCCGTCATAACCACTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACAACGCTGTGCAAGACTTCTAGTTGCAATC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATATCTAATATCCATTATGTAGTTCGGTAACG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	GGCTGTTATCGATTCAAGTTAGCAGAAAAGGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTTTTCATTTCTTCTCAAGCCGCATGGTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTAAGAGACCTACGAACCAGCTTTAGGCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|5|5|2608331-2608958|CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTGTTGCCGCCGCTCGCTTCTTTGGCAATAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCAAAACGTAAAAATCACCCCACACAAGA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CACATACCGGTGTGAGTAATATCATTATTGCA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATGAAATTATTGGTAACTGGATTTGGATCAGT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CATACTCCAGCTCAATCCCGTCATAACCACTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACAACGCTGTGCAAGACTTCTAGTTGCAATC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATATCTAATATCCATTATGTAGTTCGGTAACG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	GGCTGTTATCGATTCAAGTTAGCAGAAAAGGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTTTTCATTTCTTCTCAAGCCGCATGGTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTAAGAGACCTACGAACCAGCTTTAGGCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|5|5|2608331-2608958|CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GGTGTTGCCGCCGCTCGCTTCTTTGGCAATAT
TTTCTAAGCTGCCTATACGGCAGTGAAC	CTGGCAAAACGTAAAAATCACCCCACACAAGA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CACATACCGGTGTGAGTAATATCATTATTGCA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATGAAATTATTGGTAACTGGATTTGGATCAGT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CATACTCCAGCTCAATCCCGTCATAACCACTC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TACAACGCTGTGCAAGACTTCTAGTTGCAATC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ATATCTAATATCCATTATGTAGTTCGGTAACG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	GGCTGTTATCGATTCAAGTTAGCAGAAAAGGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTTTTCATTTCTTCTCAAGCCGCATGGTTACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTAAGAGACCTACGAACCAGCTTTAGGCAAA
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_105874256.1\|2610770_2611718_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP027398.1\|WP_072502176.1\|2613136_2616685_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP027398.1\|WP_014658072.1\|2605086_2605830_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP027398.1\|WP_004918641.1\|2611714_2612986_-\|CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP027398.1\|WP_004918656.1\|2605839_2606109_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP027398.1\|WP_072502178.1\|2601189_2602551_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP027398.1\|WP_004918672.1\|2602716_2603199_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP027398.1\|WP_014658063.1\|2622837_2623773_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP027398.1\|WP_004918654.1\|2606111_2606894_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP027398.1\|WP_004918636.1\|2616681_2617659_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP027398.1\|WP_004918669.1\|2603204_2604212_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP027398.1\|WP_004918643.1\|2609742_2610768_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP027398.1\|WP_072502989.1\|2618577_2618871_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP027398.1\|WP_004918665.1\|2604204_2604621_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NZ_CP027398.1\|WP_004918662.1\|2604645_2605074_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP027398.1\|WP_004918628.1\|2621107_2621281_+\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP027398.1\|WP_072502173.1\|2621480_2621861_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP027398.1\|WP_004918680.1\|2599370_2600735_+\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP027398.1\|WP_004918676.1\|2600745_2601189_+\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP027398.1\|WP_072502177.1\|2609098_2609734_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_105874256.1\|2610770_2611718_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.02101e-131
NZ_CP027398.1\|WP_072502176.1\|2613136_2616685_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP027398.1\|WP_014658072.1\|2605086_2605830_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	6.0386e-124
NZ_CP027398.1\|WP_004918641.1\|2611714_2612986_-\|CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	2.51324e-122
NZ_CP027398.1\|WP_004918656.1\|2605839_2606109_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	7.28415e-33
NZ_CP027398.1\|WP_072502178.1\|2601189_2602551_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	8.54217e-29
NZ_CP027398.1\|WP_004918672.1\|2602716_2603199_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.92257e-60
NZ_CP027398.1\|WP_014658063.1\|2622837_2623773_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	5.50916e-99
NZ_CP027398.1\|WP_004918654.1\|2606111_2606894_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.64892e-68
NZ_CP027398.1\|WP_004918636.1\|2616681_2617659_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.32474e-177
NZ_CP027398.1\|WP_004918669.1\|2603204_2604212_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	9.30166e-164
NZ_CP027398.1\|WP_004918643.1\|2609742_2610768_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP027398.1\|WP_072502989.1\|2618577_2618871_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.87955e-20
NZ_CP027398.1\|WP_004918665.1\|2604204_2604621_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.57005e-76
NZ_CP027398.1\|WP_004918662.1\|2604645_2605074_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	1.92193e-30
NZ_CP027398.1\|WP_004918628.1\|2621107_2621281_+\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	8.20465e-06
NZ_CP027398.1\|WP_072502173.1\|2621480_2621861_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	5.54969e-35
NZ_CP027398.1\|WP_004918680.1\|2599370_2600735_+\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP027398.1\|WP_004918676.1\|2600745_2601189_+\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	7.31435e-35
NZ_CP027398.1\|WP_072502177.1\|2609098_2609734_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.47736e-54

>NZ_CP027398.1|WP_004918654.1|2606111_2606894_+|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLLGG
>NZ_CP027398.1|WP_004918656.1|2605839_2606109_+|flagellar-biosynthesis-protein-FliQ
MTPESVMALGTEAMKIALMLAAPLLLAALVAGLTISLLQAATQVNEMTLSFIPKILSVIAVIIIAGPWMLNLLLDYMRTLFSNLPFIIG
>NZ_CP027398.1|WP_014658072.1|2605086_2605830_+|flagellar-type-III-secretion-system-pore-protein-FliP
MFSVKSPAMIASLLLMLPMQALASLPPVISRTLPDGGQSWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKISLETALERGTAPFRTFMLGQTRESDLALFARIAKVGEIQEAKDVPMRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>NZ_CP027398.1|WP_004918662.1|2604645_2605074_+|flagellar-biosynthetic-protein-FliO
MKTTPFISQTEQPSSQISPAISNSDSLVQVSGALGGIILLILAGAWLVKKLGFAPRNLGKPSLIKVKSSCSLGNKERVVVVEMNNEWLVLGVTAQSVNLLHQCPAKNETALTSVTEPLTFQSILKKKQDAANHAASNLSNYN
>NZ_CP027398.1|WP_004918665.1|2604204_2604621_+|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>NZ_CP027398.1|WP_004918669.1|2603204_2604212_+|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPSSNESATQPKDKEQVRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIIHRMLKLALSAYRDAWRPIADIDVEYVRSEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKPDRLIVSVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDEESTNE
>NZ_CP027398.1|WP_004918672.1|2602716_2603199_+|flagellar-basal-body-associated-protein-FliL
MSSSSNTSKNSNKGLLVLFALLAIAGAGFGGYTWWTTQQTANSVNEEEKSPKLSQPIFMDLEPFTVNLPGLNESPDRVLYINITLRLANEKSRKQLHDFLPEVRSRLLLLLSEQKPKALSTHDGKLQLMQAIKKTLSPTVIPGENDQEITDVLFTTFILR
>NZ_CP027398.1|WP_072502178.1|2601189_2602551_+|flagellar-hook-length-control-protein-FliK
MDVNNTGSPAITAANGAKNGHTQPNQSRADDNQEAVVPFQAALESQQPTPQKASTSEPTMDKQANQKPTSADERLTTKAHEPSTGKEKEQAEQAIEQLNYSRHLRNGSEQPALQSQLLAQSDAVEQVWLANLKNAVDQQTLSSATTKFADDQRAALVPFAQKTQPLNDSLVAMATMDEPIDLSAQMQLAGEEESPSLGAFIKNEREPRKDQPLFSLNEGRESLTKNLSSDFMPLNKKLADKEAPSSIVPTFATADNGVLIKGAFTPTTGSDAIQMAPSSPTQTVSLTPLPNSSQIISTNVPVIPMQPGVPLGSEAWQQQLNQHMLFFSRQGVSHAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSQVRAAMETMMPILRNALQESGIHLAQGSVGQDNFSGQSNADTHSEQGHEKNLYGGQTLSSVTSTEMAAVSPTTSTIRTRGGIDTFA
>NZ_CP027398.1|WP_004918676.1|2600745_2601189_+|flagella-biosynthesis-chaperone-FliJ
MSKNNALDTLLSLAVEASEEAAKVLAQVRQTQVQMTQQLNMLENYQAEYRQKLNQTLHSGIDADKWQNYQQFLVTLELTIEQQQQQLSLWEQRVSEANRHWQEKQQRVNAFDTLIQRAEQTKNQRLNRLEQKQMDEYAQRAMLRRNQ
>NZ_CP027398.1|WP_004918680.1|2599370_2600735_+|flagellum-specific-ATP-synthase-FliI
MTVRMSRWIAALEGFESRMKGIPMIRRYGRLTKITGLVMEAEGIKMPLGATCFVERAINDRHDEVVCEVVGFNGPRMLLMPLADLEGIAPGARVYAQTNGDDGQTSRLLPLGDELLGRILDAQGTPLDGKGPLDAKQRAPLITPPINPLERTPIHSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGAEGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDLGKNVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIDKQHYRQIQRFKQLTSSYQRNRDLINVGAYATGSDPLLDMAIQYYPRMSKFLQQDIDERCDYQSACEQLVHAVPNE
>NZ_CP027398.1|WP_072502177.1|2609098_2609734_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDYYQEITLLPDSTIPLDFLWQKVYQQIHIALVENKSEAGDSEVAVAFPEYGSVGFRLGKKLRLLAKTEKTLTQLNISHWLMRLADYVHIKSIQAVPEHATPISYVRQHVKGAKRLELDRYKKAQLYSVKSGQPIEVCLRAIKEPQTRSRLPFIWMESQQTKSKTEGDGHRPFPLFIRCVAAKEAKAGTFNCYGLSQSMGKGEEVATVPHF
>NZ_CP027398.1|WP_004918643.1|2609742_2610768_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWDHKSQCTPLVLQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNASFKESYTKAAKEYIAREGFRELGRRYAHNIANARFLWRNRVGAEKIEVEVKVLNKGQEQQWTFDATQYSIRSFEKQDDKVNELGAKIAAALANSEGALLLEITTYAQLGQSQEVYPSEELVLDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYNDEVNSAGAIAIEPYGAVTNLGRAYRTPSDKQDFYTHFDKWARGEKLARLEDEHYVMAVLVRGGVFGESDK
>NZ_CP027398.1|WP_105874256.1|2610770_2611718_-|type-I-F-CRISPR-associated-protein-Csy2
MNNSMNLIKLSHLKVHNANALSSPFTIAFPAMTAWLGFMHALELKLRKIGFLELQLESIAVISHECNLQTYKGPSDFVSSIVGTGNPLDKEGNRSAFIEEARCHLDVSLLIEFSDRNDEYGNVLTDKSIVDWIYELIPMMKLAGGDILSVDLPQMHYLPANDDMGKYRRSLFNSLMPGYALIERRDLMVSAMEDGQDAMDALLDYVTVHNQCVEVDSQNESKNKHYEWKVQRKTAGWIVPIATGYQGISPLGQAKNQRDPNVPHRFAESLVTLGQFVMVNKIGHPNEILWKYSNNLENSLYLCQQVESKYFTSGE
>NZ_CP027398.1|WP_004918641.1|2611714_2612986_-|CRISPR-associated-protein-Csy1
MLDPAIEAFFAERKEGWLKKNLKASMSEAEVHQIEQQCEDTFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGYVSAIIANAKQANDGFLRSSNVAVEPDALGNAAALDVYKFLTLQMQDGATLLAHIEAETQLAKTLLTLNNESYQEIRNGFLAMSATDDSVVTSSKIKQVYFPVWLDDEDYHLLSILTPSGLLFEMRRRIDDIRFSEQTKTLRDLKRKGEYSEVGFKEIYGLTTIGFGGTKPQNISVLNNQNAGKAHLLLSLPPVLNIRETRLPKTNFFTDAINPWHTKETFQAFHGLINLPKDKRGNRFIEYRDNRIQEYVDYIIVMMWKVRRALEQENITLPNKISNYQKTWLFPDNQEQRDNTDDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNAIVDVVARYKELLR
>NZ_CP027398.1|WP_072502176.1|2613136_2616685_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEDGLQTVKKMLRQSASRNTAVSCHWIRSRSRSQLLWVVGNRNKFNSQGHVPVNRTEKSFLGSEFENDWKYLSLIAAVARLAALFHDWGKASRLFQDKLNPAVKMPFKGDPVRHEWVSSILFSSLVKIHSAEGSEEKWLDALIHQEWDESQLQQCVNDNCLASNPLAELPDAAALLTWLILTHHKLPFLDEQELCNWQDKAINLHTQLLAKIKQSWGYRNGNDDAQFQQRIKMCFEFPNGLLSNSKAWVQAVQQAATDLKNQLPLFQQAMADGSWRVIAHYARLCLMLGDHNYSSQGNDPQWHSDIALYANTHKIRNINNIPQVTFKQKLDEHLVKVAETARDIAETLPYFESEPPFASDVPKLAYDKNSTGKFSWQEDAVNSIYQYRKERNDDIKGYFIVNMASTGCGKTRANAKIMQALSEDKQSLRYILALGLRTLTLQTGDEYKDQNKIGLGERDLAVLIGSKAVAQLHQNAKENENASEASNDTSSHQTNSESNDLKPHQTGSESQEMLFDENEEMLRWDENKWSGILPEEVLSTVLTREKDRALLYAPVLACTIDHIIGATETIRGGRYILPCLRLMSSDLVIDEVDDFIEADSAAIARLIHMVGLLGRKVMISSATITPDTALAYFHAYQSGWHVHAKSRQQSLEIGCMWIDEGEYDPVKEKCKSSTLAATLVANDENTPYFYQQYHGKFIDKRAKVLGQQPARRKALIVPTPKDNTQESQQCYFNHILNAVLTQHHYHAFLDKRTGIQVSFGVIRVANILPCIDLTRFLLECECPDEVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEKSGEEPDALNDAIIRQHLAQVSAEGKAKHLIFILVATPVEEVGRDHDFDWAVVEPSSWRSIIQIAGRVRRHREGEVAQPNMALLQYNLKGFEEGNDNPFSRPGYENRYINLGLSTHDLYELVDEQQLNKSVDAIPRIQKQANYESKKHTNLACLEHAAIKYTFKIEHIFPPKRAENSATSSRRTTRRSNHQTIPSNAASHIWGYTHGNWWMTAISQQIASFRSGAPSFRLVLEILPRGEMQFSEYHRENGWVNVGAQNGIHFIEFPESMKKRLWLVRDYAKSLESQTEEAEQITSLSRFYGEITFLKCLNVHDGYRYDDQMGVYPIKR
>NZ_CP027398.1|WP_004918636.1|2616681_2617659_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPADLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQSEYRPTEYLQGWMRFWFDDKKRLAAAKTLQRSRISYLQKTWQSSRELQNEGFIYNDTLIQNALETFHTRTEAADDPQTLLLTEAQLTKALYKYAANNTGQKNFTRQHQAMDKANAFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWSFICAKEGASEQEFRQQILQSFIDNHALDFLFDTVKTIALQTGSEQQIQEPKL
>NZ_CP027398.1|WP_072502989.1|2618577_2618871_-|DUF1240-domain-containing-protein
MKDRILFSFLTGLFGFGAPIVLYFSYFGFILAFKKKPTKKIIKAANYLAGIVIIGVFVSLFFSFEIKFNLTSKGYTECYKNSIFAPTEYVISKDMCK
>NZ_CP027398.1|WP_004918628.1|2621107_2621281_+|DinI-like-family-protein
MVTIKIRFNENKKNQLPISTLEALKNEVTKRLSAKYSDLRVDINWGTQDNISIDGLG
>NZ_CP027398.1|WP_072502173.1|2621480_2621861_+|DUF805-domain-containing-protein
MNWYLEVIKNNYANFNGRARRKEYWIFSLINFIIIIPLYLVVLASTNDYTGDINGLGIVALVLLMIYCVAILIPSLAVTVRRLHDIDKSGWWYLLTFIPFGGLVIFVFTCLDGTSGNNRFGSNPKE
>NZ_CP027398.1|WP_014658063.1|2622837_2623773_-|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRVNQSENRNQQYVASRGFAKTGMLLQMSVLTQMTEVTTQIDTTIIQASNQGSLSDSDRMSLAEQLSGLKDQLVALGNTTDGNGRYIFAGYKSDKPPFEVNAAGDVIYKGGDKAIMQNVSSDREMTTYFTGAQVFATDSNNVVNVFKALNEGIAALKTPQDQATQSEKEAAQKALDSANTAVKSALDKISNIESKQGLQLQEIDQLNFLADTRSIQNSQRISELLDTNWTGVTTDYYKEMAMFQASQDIFKDLNSMSLFGGR

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Crispr_ID: NZ_CP027398_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027398_6

2622133-2622580

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT

7 spacers

cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP027398_6

>merge|NZ_CP027398|6|2622133-2622580|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTATACGGCAGTGAACGAGGATGTCGATTTAAAGCTAGGAGCTGATTGTTTCTAAGCTGCCTATACGGCAGTGAACGTGATGCTCTATTCATGGAAACGGGTATGAGATTTCTAAGCTGCCTATACGGCAGTGAACGTGATGATCTATTCATGGAAACGGGTATGAGATTTCTAAGCTGCCTATACGGCAGTGAACTCTCAAGAACAGGCAAGAGCTAAATTTCTTGATTTCTAAGCTGCCTATACGGCAGTGAACGATGAATCAATATACCGACACAATGAAGATGTTTTCTAAGCTGCCTATACGGCAGTGAACAAGGCCGCCCCTCTAATTCACGCTCACCTCGATTTCTAAGCTGCCTATACGGCAGTGAACCCTCAGTTGTGGAGCCGCAGCGGTAGTCCGATTTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|6|6|2622133-2622580|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAGGATGTCGATTTAAAGCTAGGAGCTGATTG
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGATCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCTCAAGAACAGGCAAGAGCTAAATTTCTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGAATCAATATACCGACACAATGAAGATGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGGCCGCCCCTCTAATTCACGCTCACCTCGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTCAGTTGTGGAGCCGCAGCGGTAGTCCGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|6|6|2622133-2622580|CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAGGATGTCGATTTAAAGCTAGGAGCTGATTG
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGATCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCTCAAGAACAGGCAAGAGCTAAATTTCTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGAATCAATATACCGACACAATGAAGATGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGGCCGCCCCTCTAATTCACGCTCACCTCGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTCAGTTGTGGAGCCGCAGCGGTAGTCCGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP027398|6|6|2622133-2622580|CRT
TTTCTAAGCTGCCTATACGGCAGTGAAC	GAGGATGTCGATTTAAAGCTAGGAGCTGATTG
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGCTCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GTGATGATCTATTCATGGAAACGGGTATGAGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCTCAAGAACAGGCAAGAGCTAAATTTCTTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	GATGAATCAATATACCGACACAATGAAGATGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AAGGCCGCCCCTCTAATTCACGCTCACCTCGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	CCTCAGTTGTGGAGCCGCAGCGGTAGTCCGAT
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027398.1\|WP_061064158.1\|2631491_2632331_-\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
NZ_CP027398.1\|WP_105874256.1\|2610770_2611718_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP027398.1\|WP_072502176.1\|2613136_2616685_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP027398.1\|WP_072502989.1\|2618577_2618871_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP027398.1\|WP_004918641.1\|2611714_2612986_-\|CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP027398.1\|WP_004918605.1\|2632343_2632748_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP027398.1\|WP_036943745.1\|2623800_2625441_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NZ_CP027398.1\|WP_004918610.1\|2629469_2630225_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP027398.1\|WP_004918654.1\|2606111_2606894_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP027398.1\|WP_053110746.1\|2625685_2626666_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_CP027398.1\|WP_014658060.1\|2627810_2628542_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP027398.1\|WP_004918636.1\|2616681_2617659_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP027398.1\|WP_004918643.1\|2609742_2610768_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP027398.1\|WP_004918608.1\|2630240_2631461_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP027398.1\|WP_014658063.1\|2622837_2623773_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
NZ_CP027398.1\|WP_072502173.1\|2621480_2621861_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP027398.1\|WP_004918612.1\|2628667_2629450_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP027398.1\|WP_004918628.1\|2621107_2621281_+\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP027398.1\|WP_105874257.1\|2626665_2627769_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP027398.1\|WP_072502177.1\|2609098_2609734_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870

Protein	Function_ID	Function_description	E-value
NZ_CP027398.1\|WP_061064158.1\|2631491_2632331_-\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	1.0913e-46
NZ_CP027398.1\|WP_105874256.1\|2610770_2611718_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.02101e-131
NZ_CP027398.1\|WP_072502176.1\|2613136_2616685_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP027398.1\|WP_072502989.1\|2618577_2618871_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.87955e-20
NZ_CP027398.1\|WP_004918641.1\|2611714_2612986_-\|CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	2.51324e-122
NZ_CP027398.1\|WP_004918605.1\|2632343_2632748_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	2.38262e-72
NZ_CP027398.1\|WP_036943745.1\|2623800_2625441_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NZ_CP027398.1\|WP_004918610.1\|2629469_2630225_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	2.0995e-111
NZ_CP027398.1\|WP_004918654.1\|2606111_2606894_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.64892e-68
NZ_CP027398.1\|WP_053110746.1\|2625685_2626666_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	5.94704e-144
NZ_CP027398.1\|WP_014658060.1\|2627810_2628542_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	8.44649e-98
NZ_CP027398.1\|WP_004918636.1\|2616681_2617659_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.32474e-177
NZ_CP027398.1\|WP_004918643.1\|2609742_2610768_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP027398.1\|WP_004918608.1\|2630240_2631461_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	2.17475e-153
NZ_CP027398.1\|WP_014658063.1\|2622837_2623773_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	5.50916e-99
NZ_CP027398.1\|WP_072502173.1\|2621480_2621861_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	5.54969e-35
NZ_CP027398.1\|WP_004918612.1\|2628667_2629450_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	9.58869e-155
NZ_CP027398.1\|WP_004918628.1\|2621107_2621281_+\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	8.20465e-06
NZ_CP027398.1\|WP_105874257.1\|2626665_2627769_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP027398.1\|WP_072502177.1\|2609098_2609734_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.47736e-54

>NZ_CP027398.1|WP_072502173.1|2621480_2621861_+|DUF805-domain-containing-protein
MNWYLEVIKNNYANFNGRARRKEYWIFSLINFIIIIPLYLVVLASTNDYTGDINGLGIVALVLLMIYCVAILIPSLAVTVRRLHDIDKSGWWYLLTFIPFGGLVIFVFTCLDGTSGNNRFGSNPKE
>NZ_CP027398.1|WP_004918628.1|2621107_2621281_+|DinI-like-family-protein
MVTIKIRFNENKKNQLPISTLEALKNEVTKRLSAKYSDLRVDINWGTQDNISIDGLG
>NZ_CP027398.1|WP_072502989.1|2618577_2618871_-|DUF1240-domain-containing-protein
MKDRILFSFLTGLFGFGAPIVLYFSYFGFILAFKKKPTKKIIKAANYLAGIVIIGVFVSLFFSFEIKFNLTSKGYTECYKNSIFAPTEYVISKDMCK
>NZ_CP027398.1|WP_004918636.1|2616681_2617659_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPADLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQSEYRPTEYLQGWMRFWFDDKKRLAAAKTLQRSRISYLQKTWQSSRELQNEGFIYNDTLIQNALETFHTRTEAADDPQTLLLTEAQLTKALYKYAANNTGQKNFTRQHQAMDKANAFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWSFICAKEGASEQEFRQQILQSFIDNHALDFLFDTVKTIALQTGSEQQIQEPKL
>NZ_CP027398.1|WP_072502176.1|2613136_2616685_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITEDGLQTVKKMLRQSASRNTAVSCHWIRSRSRSQLLWVVGNRNKFNSQGHVPVNRTEKSFLGSEFENDWKYLSLIAAVARLAALFHDWGKASRLFQDKLNPAVKMPFKGDPVRHEWVSSILFSSLVKIHSAEGSEEKWLDALIHQEWDESQLQQCVNDNCLASNPLAELPDAAALLTWLILTHHKLPFLDEQELCNWQDKAINLHTQLLAKIKQSWGYRNGNDDAQFQQRIKMCFEFPNGLLSNSKAWVQAVQQAATDLKNQLPLFQQAMADGSWRVIAHYARLCLMLGDHNYSSQGNDPQWHSDIALYANTHKIRNINNIPQVTFKQKLDEHLVKVAETARDIAETLPYFESEPPFASDVPKLAYDKNSTGKFSWQEDAVNSIYQYRKERNDDIKGYFIVNMASTGCGKTRANAKIMQALSEDKQSLRYILALGLRTLTLQTGDEYKDQNKIGLGERDLAVLIGSKAVAQLHQNAKENENASEASNDTSSHQTNSESNDLKPHQTGSESQEMLFDENEEMLRWDENKWSGILPEEVLSTVLTREKDRALLYAPVLACTIDHIIGATETIRGGRYILPCLRLMSSDLVIDEVDDFIEADSAAIARLIHMVGLLGRKVMISSATITPDTALAYFHAYQSGWHVHAKSRQQSLEIGCMWIDEGEYDPVKEKCKSSTLAATLVANDENTPYFYQQYHGKFIDKRAKVLGQQPARRKALIVPTPKDNTQESQQCYFNHILNAVLTQHHYHAFLDKRTGIQVSFGVIRVANILPCIDLTRFLLECECPDEVEIRTMAYHSQQVLLLRHEQEQHLDSVLKRKEKSGEEPDALNDAIIRQHLAQVSAEGKAKHLIFILVATPVEEVGRDHDFDWAVVEPSSWRSIIQIAGRVRRHREGEVAQPNMALLQYNLKGFEEGNDNPFSRPGYENRYINLGLSTHDLYELVDEQQLNKSVDAIPRIQKQANYESKKHTNLACLEHAAIKYTFKIEHIFPPKRAENSATSSRRTTRRSNHQTIPSNAASHIWGYTHGNWWMTAISQQIASFRSGAPSFRLVLEILPRGEMQFSEYHRENGWVNVGAQNGIHFIEFPESMKKRLWLVRDYAKSLESQTEEAEQITSLSRFYGEITFLKCLNVHDGYRYDDQMGVYPIKR
>NZ_CP027398.1|WP_004918641.1|2611714_2612986_-|CRISPR-associated-protein-Csy1
MLDPAIEAFFAERKEGWLKKNLKASMSEAEVHQIEQQCEDTFALSQWLPNAAKRAGQISLSTHPCTFSHPSARKNKNGYVSAIIANAKQANDGFLRSSNVAVEPDALGNAAALDVYKFLTLQMQDGATLLAHIEAETQLAKTLLTLNNESYQEIRNGFLAMSATDDSVVTSSKIKQVYFPVWLDDEDYHLLSILTPSGLLFEMRRRIDDIRFSEQTKTLRDLKRKGEYSEVGFKEIYGLTTIGFGGTKPQNISVLNNQNAGKAHLLLSLPPVLNIRETRLPKTNFFTDAINPWHTKETFQAFHGLINLPKDKRGNRFIEYRDNRIQEYVDYIIVMMWKVRRALEQENITLPNKISNYQKTWLFPDNQEQRDNTDDWLEILIPEIARQFIAGYKVVNGKKALFLGNDEFNAIVDVVARYKELLR
>NZ_CP027398.1|WP_105874256.1|2610770_2611718_-|type-I-F-CRISPR-associated-protein-Csy2
MNNSMNLIKLSHLKVHNANALSSPFTIAFPAMTAWLGFMHALELKLRKIGFLELQLESIAVISHECNLQTYKGPSDFVSSIVGTGNPLDKEGNRSAFIEEARCHLDVSLLIEFSDRNDEYGNVLTDKSIVDWIYELIPMMKLAGGDILSVDLPQMHYLPANDDMGKYRRSLFNSLMPGYALIERRDLMVSAMEDGQDAMDALLDYVTVHNQCVEVDSQNESKNKHYEWKVQRKTAGWIVPIATGYQGISPLGQAKNQRDPNVPHRFAESLVTLGQFVMVNKIGHPNEILWKYSNNLENSLYLCQQVESKYFTSGE
>NZ_CP027398.1|WP_004918643.1|2609742_2610768_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTSWDHKSQCTPLVLQEKSVRGTISNRLKGPVKNDPLKLNAEVEKANLQTVDACALGTQQDTLKHQFTLKILGGVETPSACNNASFKESYTKAAKEYIAREGFRELGRRYAHNIANARFLWRNRVGAEKIEVEVKVLNKGQEQQWTFDATQYSIRSFEKQDDKVNELGAKIAAALANSEGALLLEITTYAQLGQSQEVYPSEELVLDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPDYNDEVNSAGAIAIEPYGAVTNLGRAYRTPSDKQDFYTHFDKWARGEKLARLEDEHYVMAVLVRGGVFGESDK
>NZ_CP027398.1|WP_072502177.1|2609098_2609734_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDYYQEITLLPDSTIPLDFLWQKVYQQIHIALVENKSEAGDSEVAVAFPEYGSVGFRLGKKLRLLAKTEKTLTQLNISHWLMRLADYVHIKSIQAVPEHATPISYVRQHVKGAKRLELDRYKKAQLYSVKSGQPIEVCLRAIKEPQTRSRLPFIWMESQQTKSKTEGDGHRPFPLFIRCVAAKEAKAGTFNCYGLSQSMGKGEEVATVPHF
>NZ_CP027398.1|WP_004918654.1|2606111_2606894_+|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAFEQLSLMFGLLGG
>NZ_CP027398.1|WP_014658063.1|2622837_2623773_-|flagellar-hook-associated-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRVNQSENRNQQYVASRGFAKTGMLLQMSVLTQMTEVTTQIDTTIIQASNQGSLSDSDRMSLAEQLSGLKDQLVALGNTTDGNGRYIFAGYKSDKPPFEVNAAGDVIYKGGDKAIMQNVSSDREMTTYFTGAQVFATDSNNVVNVFKALNEGIAALKTPQDQATQSEKEAAQKALDSANTAVKSALDKISNIESKQGLQLQEIDQLNFLADTRSIQNSQRISELLDTNWTGVTTDYYKEMAMFQASQDIFKDLNSMSLFGGR
>NZ_CP027398.1|WP_036943745.1|2623800_2625441_-|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIEDISSNIGSFFTALDAASSDASDKTLIDVFLGKSNALVGQFKEADRRLQEMERDVNRQIETKVKDINTYAEKIAGLNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLIGVKVIEQNGNYNVTFANGLPLVTGENANRLEAVPSSQDDSRFSIGFVGANGQVREIADDAFRGGELSGVLRSRKEVIDPAYQKLNKLALVFASKFNEVHKKGFDANGNPGKDFFEIGKGNVVSNTFNRGKAEFDFNYSDVSQVTGNNYEMRFDGKEWNVTRLPEGFAVTVDRSTPDTLKFDGIELKITQNNVQSGDSFLVKPVNGVINGMQSLISDAANFAAAGEKGSGPGDNDNLKELVKLQDQKLIGGTSTFSDYYATIVNDVGNQTKQAQIDSETQNKMTESFYQQEQAVSGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>NZ_CP027398.1|WP_053110746.1|2625685_2626666_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNDMQLMQGAAFDLQSLSHLKRELTDSPDKGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTQMQGDTSSEDVPVKPFNMDDRLIDSLPNQAMAQIVRRFAPLGDALSSSMQKVKSLSLNSQNFISRLIEPAKVASQKSGISHLLVLAQAALESGWGRREILTAEGKTSHNLFGIKAGKSWQGPVTNIMTTEVINGKSIKMRDDFRVYGSYEEAIADYINLLTENPRYRDVKHAQSPEIAARRLHQAGYATDPNYADKLITLINQIRGYQTADKAASRAVQAYTVDLSDIF
>NZ_CP027398.1|WP_105874257.1|2626665_2627769_-|flagellar-basal-body-P-ring-protein-FlgI
MNKLVTLLLTLLCLFATSAYSERIKDLTTVQGVRDNALIGYGLVVGLDCTGDQTMQTPFTTQSLSNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARAGQAVDVVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASAGGSSIKVNQLAGGRITGGATIERELPTSFGQNGIINLQLNDDSFTLAQDISDAINRLRGAGTATPLDSRTVQLRVPMNNSDQVRFLAQIQELNVRTPIAEAKVILNSRTGSVVINRSVTLESCAVAHGSLSVMVERQTQVSQPNTPFAGGQTVVTRNTNLGVREQGGALQKVNASVQLNQVIQALNTLGATPTDLMSILQAMESAGCLRAKLEII
>NZ_CP027398.1|WP_014658060.1|2627810_2628542_-|flagellar-basal-body-L-ring-protein-FlgH
MTKNGFTPEIKGDSFFSPSKVLVIALVLATSGCAYVKPRPLVDTQTSALPTAPTAPAPNGAIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRSGKTGFLAAILPGFMQGWLGGSNTELDVKGSSDFSGKGGANANNTFRGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGADNNVSSTQVADARIEYVGDGYINESQTMGWLQRFFLNVSPY
>NZ_CP027398.1|WP_004918612.1|2628667_2629450_-|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQTSLPSGLQLGTGSRPVATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGALQPNQDGQLVTSSGYQIVPAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>NZ_CP027398.1|WP_004918610.1|2629469_2630225_-|flagellar-basal-body-rod-protein-FlgF
MDHVIYTAMGGARHALENQAIVSNNIANVSTSGFKAQLAAMRAVPIHGDSEQTRTLVVASTPGADMSQGPLNYTGRPMDVALNDKHFLAVELADGSEAYTRNGNIQISPDGELVIGERRLQGDGGPINVPPNAELTIGEDGTVTALLATDPPTMLGQIGRLKVVEAQPQDLIRGEDGLFHLSPQAAAANGNGLAQSERASVTSGVIEGSNVNAAEAMVSMIANARYFEMQMKVVRSADENAQKANQLLAVS
>NZ_CP027398.1|WP_004918608.1|2630240_2631461_-|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQDQNGDIFYSRDGQFIRDKSGNLVNNQGMTVTGYPAGLDENGNVVVQSGGVPQGLNIPTDMMDAQASDLAKLTINLNSEDKVKSKPFDINNPDDTGSYNFSTTMTAFDSQGNTHEISVYFVKTDDNKWTAYAKDAGDKVAKKLGDMEFDGNGRLNSPTNAVFAFDYQGLNGANNGTLQIDLNKTRQQKVSESSVSAIDVNGYPAGEYTNFKVEDNGLIVANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWAPSNASGNPMDGVPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNLR
>NZ_CP027398.1|WP_061064158.1|2631491_2632331_-|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNTTAGPEPLKSNIPNKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEIVLAPLKTQNDSDNTAISKPTNPLPDDETSRALSAANDNGGDDDASQGDYISSPFGFFLPKMADSVEITIRDKNRAIIRTISYDTEVKPDIYDMSWDGRDDNGKLVADTNSKYFFDVRAVSNGAEIEVTKLGYTRVNGVTPGTDAPLLDVGIGQSVPLSSIFKVYPSS
>NZ_CP027398.1|WP_004918605.1|2632343_2632748_-|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDGEPFRAKQVVFQMTPQGRNGVGGVRVSQLIEDPTPPRMEYKPGHPLADEKGYVRMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP027398_3	3.4\|2515891\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2515891-2515922	32	NZ_CP027398.1	3575795-3575826	0	1.0

1. spacer 3.4|2515891|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to position: 3575795-3575826, mismatch: 0, identity: 1.0

attcgtaagctttctatcctgtatatcaatga	CRISPR spacer
attcgtaagctttctatcctgtatatcaatga	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027398_1	1.1\|1148287\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	1148287-1148318	32	MK047640	Phage NV18, complete genome	15416-15447	2	0.938
NZ_CP027398_3	3.5\|2515951\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2515951-2515982	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	19447-19478	2	0.938
NZ_CP027398_3	3.6\|2516011\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2516011-2516042	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	16462-16493	2	0.938
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	MK448589	Streptococcus satellite phage Javan632, complete genome	6216-6247	5	0.844
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	MN602267	Bacteriophage DSS3_PM1, complete genome	62639-62670	5	0.844
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	MH426726	Erwinia phage Pavtok, complete genome	29264-29295	5	0.844
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	MK672805	Vibrio phage Va_PF430-3_p42, complete genome	19868-19899	6	0.812
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	NC_008761	Polaromonas naphthalenivorans CJ2 plasmid pPNAP05, complete sequence	25159-25190	6	0.812
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	193871-193902	6	0.812
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	316066-316097	6	0.812
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	MN856005	Myoviridae sp. isolate 302, complete genome	3071-3102	6	0.812
NZ_CP027398_5	5.4\|2608539\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608539-2608570	32	NC_015054	Yersinia pestis Java 9 plasmid pJARS35, complete sequence	1359-1390	6	0.812
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	127443-127474	7	0.781
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	6058-6089	7	0.781
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	277779-277810	7	0.781
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	6066-6097	7	0.781
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	6068-6099	7	0.781
NZ_CP027398_4	4.3\|2535391\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535391-2535422	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	6068-6099	7	0.781
NZ_CP027398_4	4.4\|2535451\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535451-2535482	32	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	277176-277207	7	0.781
NZ_CP027398_4	4.4\|2535451\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535451-2535482	32	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	122324-122355	7	0.781
NZ_CP027398_5	5.4\|2608539\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608539-2608570	32	NZ_KY978631	Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence	66231-66262	7	0.781
NZ_CP027398_5	5.4\|2608539\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608539-2608570	32	NZ_CP008900	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence	11270-11301	7	0.781
NZ_CP027398_5	5.4\|2608539\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608539-2608570	32	NZ_CP043384	Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001 plasmid p1_045001, complete sequence	1252-1283	7	0.781
NZ_CP027398_5	5.4\|2608539\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608539-2608570	32	NZ_AP019532	Serratia symbiotica strain IS plasmid pSsyis1, complete sequence	81821-81852	7	0.781
NZ_CP027398_5	5.6\|2608659\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608659-2608690	32	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	32507-32538	7	0.781
NZ_CP027398_6	6.5\|2622401\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2622401-2622432	32	GU943078	Uncultured phage MedDCM-OCT-S09-C7 genomic sequence	7231-7262	7	0.781
NZ_CP027398_3	3.4\|2515891\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2515891-2515922	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	178687-178718	8	0.75
NZ_CP027398_3	3.7\|2516071\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2516071-2516102	32	NC_017580	Shewanella baltica OS117 plasmid pSBAL11702, complete sequence	37491-37522	8	0.75
NZ_CP027398_4	4.4\|2535451\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535451-2535482	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	201278-201309	8	0.75
NZ_CP027398_4	4.4\|2535451\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535451-2535482	32	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	219144-219175	8	0.75
NZ_CP027398_4	4.4\|2535451\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2535451-2535482	32	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	266316-266347	8	0.75
NZ_CP027398_5	5.7\|2608719\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608719-2608750	32	NC_023570	Acinetobacter phage Petty, complete genome	16278-16309	8	0.75
NZ_CP027398_6	6.4\|2622341\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2622341-2622372	32	NC_029030	Streptococcus phage APCM01, complete genome	8590-8621	8	0.75
NZ_CP027398_3	3.7\|2516071\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2516071-2516102	32	MN693029	Marine virus AFVG_117M56, complete genome	48392-48423	9	0.719
NZ_CP027398_3	3.7\|2516071\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2516071-2516102	32	MN692985	Marine virus AFVG_117M57, complete genome	48536-48567	9	0.719
NZ_CP027398_1	1.4\|1148467\|32\|NZ_CP027398\|CRISPRCasFinder,CRT	1148467-1148498	32	MN694663	Marine virus AFVG_250M439, complete genome	21431-21462	10	0.688
NZ_CP027398_2	2.2\|2509374\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509374-2509405	32	NZ_CP012104	Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence	33195-33226	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013422	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C53A-MedDCM-OCT-S26-C61	2462-2493	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013693	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S33-C59, * SEQUENCING IN PROGRESS *	24869-24900	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013692	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S32-C67, * SEQUENCING IN PROGRESS *	30872-30903	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013691	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S30-C57, * SEQUENCING IN PROGRESS *	7356-7387	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013423	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C53A-MedDCM-OCT-S34-C54	30715-30746	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013697	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S46-C69, * SEQUENCING IN PROGRESS *	24516-24547	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013694	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S35-C68, * SEQUENCING IN PROGRESS *	7846-7877	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013696	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S41-C66, * SEQUENCING IN PROGRESS *	9423-9454	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013695	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S40-C60, * SEQUENCING IN PROGRESS *	23175-23206	10	0.688
NZ_CP027398_2	2.5\|2509554\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2509554-2509585	32	AP013689	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S25-C57, * SEQUENCING IN PROGRESS *	7357-7388	10	0.688
NZ_CP027398_5	5.1\|2608359\|32\|NZ_CP027398\|PILER-CR,CRISPRCasFinder,CRT	2608359-2608390	32	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	380433-380464	11	0.656

1. spacer 1.1|1148287|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 2, identity: 0.938

tcatgctgttgaagccaacgagaaacgtaaaa	CRISPR spacer
tcatgctgtggaagctaacgagaaacgtaaaa	Protospacer
********* *****.****************

2. spacer 3.5|2515951|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 2, identity: 0.938

atcgctcattaaagtacgatctcaaatgtgct	CRISPR spacer
atcgttcattaaagtacgttctcaaatgtgct	Protospacer
****.************* *************

3. spacer 3.6|2516011|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 2, identity: 0.938

attcttgctgtgtgtatatttactcagtaaca	CRISPR spacer
attcttgctgtgtgtatatttgctctgtaaca	Protospacer
*********************.*** ******

4. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 5, identity: 0.844

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
gtcatcaagcaccaggtaatcaacctctttca	Protospacer
***************  ********** . **

5. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MN602267 (Bacteriophage DSS3_PM1, complete genome) position: , mismatch: 5, identity: 0.844

ggctttgctgcgtatgtttgatgctgcttggt-	CRISPR spacer
cgctatgctgcgtatgtttgaggct-cttgctg	Protospacer
 *** **************** *** **** *

6. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MH426726 (Erwinia phage Pavtok, complete genome) position: , mismatch: 5, identity: 0.844

-taccacgttctgtttattcgccctcatttgaa	CRISPR spacer
gtgccac-ttccgttttttcgccctcatttgag	Protospacer
 *.**** ***.**** ***************.

7. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MK672805 (Vibrio phage Va_PF430-3_p42, complete genome) position: , mismatch: 6, identity: 0.812

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
ttcatcaagcaccagtagatcaacctggctaa	Protospacer
 ****************.******** .*  *

8. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_008761 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP05, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
gtcatcaatcaccagtaaatcaagcttggcca	Protospacer
******** ************** **..  **

9. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
gtcatcaatcaccagtaaatcaagcttggcca	Protospacer
******** ************** **..  **

10. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 6, identity: 0.812

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
gtcatcaatcaccagtaaatcaagcttggcca	Protospacer
******** ************** **..  **

11. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MN856005 (Myoviridae sp. isolate 302, complete genome) position: , mismatch: 6, identity: 0.812

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
atcatcaagcaccaggacatcaacctctttca	Protospacer
.************** * ********* . **

12. spacer 5.4|2608539|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_015054 (Yersinia pestis Java 9 plasmid pJARS35, complete sequence) position: , mismatch: 6, identity: 0.812

atgaaattattggtaactggatttggatcagt	CRISPR spacer
acgaggtcattggtaactgggtctggatcagt	Protospacer
*.**..*.************.*.*********

13. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taccacgttctgtttattcgccctcatttgaa	CRISPR spacer
tagctacttccgttttttcgccctcatttgag	Protospacer
** *   ***.**** ***************.

14. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 7, identity: 0.781

taccacg-ttctgtttattcgccctcatttgaa	CRISPR spacer
-gcgacacttccgttttttcgccctcatttgag	Protospacer
 .* **. ***.**** ***************.

15. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 7, identity: 0.781

taccacg-ttctgtttattcgccctcatttgaa	CRISPR spacer
-gcgacacttccgttttttcgccctcatttgag	Protospacer
 .* **. ***.**** ***************.

16. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 7, identity: 0.781

taccacg-ttctgtttattcgccctcatttgaa	CRISPR spacer
-gcgacacttccgttttttcgccctcatttgag	Protospacer
 .* **. ***.**** ***************.

17. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 7, identity: 0.781

taccacg-ttctgtttattcgccctcatttgaa	CRISPR spacer
-gcgacacttccgttttttcgccctcatttgag	Protospacer
 .* **. ***.**** ***************.

18. spacer 4.3|2535391|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 7, identity: 0.781

taccacg-ttctgtttattcgccctcatttgaa	CRISPR spacer
-gcgacacttccgttttttcgccctcatttgag	Protospacer
 .* **. ***.**** ***************.

19. spacer 4.4|2535451|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 7, identity: 0.781

gattttcatgttgttaatacatt--ccgattact	CRISPR spacer
gatttacatgttgataatacattaaataatta--	Protospacer
***** ******* *********   ..****

20. spacer 4.4|2535451|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

gattttcatgttgttaatacatt--ccgattact	CRISPR spacer
gatttacatgttgataatacattaaataatta--	Protospacer
***** ******* *********   ..****

21. spacer 5.4|2608539|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY978631 (Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

atgaaattattggtaactggatttggatcagt	CRISPR spacer
ttgagattattggtaactgggtttggatttcc	Protospacer
 ***.***************.*******.  .

22. spacer 5.4|2608539|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008900 (Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence) position: , mismatch: 7, identity: 0.781

atgaaattattggtaactggatttggatcagt	CRISPR spacer
ttgaaattatcggtaactgggtttggatttcc	Protospacer
 *********.*********.*******.  .

23. spacer 5.4|2608539|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043384 (Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001 plasmid p1_045001, complete sequence) position: , mismatch: 7, identity: 0.781

atgaaattattggtaactggatttggatcagt	CRISPR spacer
ttgaaattatcggtaactgggtttggatttcc	Protospacer
 *********.*********.*******.  .

24. spacer 5.4|2608539|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019532 (Serratia symbiotica strain IS plasmid pSsyis1, complete sequence) position: , mismatch: 7, identity: 0.781

atgaaattattggtaactggatttggatcagt	CRISPR spacer
tcgaggtaattggtaactgggtatggatcagt	Protospacer
 .**..* ************.* *********

25. spacer 5.6|2608659|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 7, identity: 0.781

-tacaacgctgtgcaagacttctagttgcaatc	CRISPR spacer
gtactg-gatgtgcaagacttcttgttgtaata	Protospacer
 *** . * ************** ****.***

26. spacer 6.5|2622401|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to GU943078 (Uncultured phage MedDCM-OCT-S09-C7 genomic sequence) position: , mismatch: 7, identity: 0.781

gatgaatc--aatataccgacacaatgaagatgt	CRISPR spacer
--tcaaccagaatatacagtcacaatgaagatga	Protospacer
  * **.*  ******* * *************

27. spacer 3.4|2515891|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

attcgtaagctttctatcctgtatatcaatga	CRISPR spacer
acttgaaagcttgctatcctgaatatcaagtt	Protospacer
*.*.* ****** ******** *******

28. spacer 3.7|2516071|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_017580 (Shewanella baltica OS117 plasmid pSBAL11702, complete sequence) position: , mismatch: 8, identity: 0.75

actggttagcgggtgatgattatcaagctacc	CRISPR spacer
attggttagcggttgatgattatcagttttta	Protospacer
*.********** ************. .* .

29. spacer 4.4|2535451|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

gattttcatgttgttaatacatt--ccgattact	CRISPR spacer
gatttacatgttgataatacattaaatagtta--	Protospacer
***** ******* *********   ...***

30. spacer 4.4|2535451|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 8, identity: 0.75

gattttcatgttgttaatacatt--ccgattact	CRISPR spacer
gatttacatgttgataatacattaaatagtta--	Protospacer
***** ******* *********   ...***

31. spacer 4.4|2535451|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 8, identity: 0.75

gattttcatgttgttaatacatt--ccgattact	CRISPR spacer
gatttacatgttgataatacattaaatagtta--	Protospacer
***** ******* *********   ...***

32. spacer 5.7|2608719|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_023570 (Acinetobacter phage Petty, complete genome) position: , mismatch: 8, identity: 0.75

atatctaatatccattatgtagttcggtaacg	CRISPR spacer
gtagtgcatatccattatgtacttcggtaagc	Protospacer
.** .  ************** ********

33. spacer 6.4|2622341|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NC_029030 (Streptococcus phage APCM01, complete genome) position: , mismatch: 8, identity: 0.75

tctcaagaacaggcaagagctaaat---ttcttga	CRISPR spacer
actcaagaacagtcaaaagctaaacaagctct---	Protospacer
 *********** ***.*******.   .***

34. spacer 3.7|2516071|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 9, identity: 0.719

actggttagcgggtgatgattatcaagctacc	CRISPR spacer
tttatgtagcaggtgatgatgatcaagctatt	Protospacer
 .*.  ****.********* *********..

35. spacer 3.7|2516071|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 9, identity: 0.719

actggttagcgggtgatgattatcaagctacc	CRISPR spacer
tttatgtagcaggtgatgatgatcaagctatt	Protospacer
 .*.  ****.********* *********..

36. spacer 1.4|1148467|32|NZ_CP027398|CRISPRCasFinder,CRT matches to MN694663 (Marine virus AFVG_250M439, complete genome) position: , mismatch: 10, identity: 0.688

tacaggaacagtaactaaacttaggatataac	CRISPR spacer
tacaggaacaatatctaaacttacttctccat	Protospacer
**********.** *********   . . *.

37. spacer 2.2|2509374|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012104 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence) position: , mismatch: 10, identity: 0.688

gtcatcaagcaccagtaaatcaacctcacaca	CRISPR spacer
atcatcaagtaccaggaaatcaacgcttgtta	Protospacer
.********.***** ******** ..   .*

38. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013422 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C53A-MedDCM-OCT-S26-C61) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

39. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013693 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S33-C59, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

40. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013692 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S32-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

41. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013691 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S30-C57, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

42. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013423 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C53A-MedDCM-OCT-S34-C54) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

43. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013697 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S46-C69, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

44. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013694 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S35-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

45. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013696 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S41-C66, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

46. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013695 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S40-C60, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

47. spacer 2.5|2509554|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to AP013689 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C53A-MedDCM-OCT-S25-C57, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

ggctttgctgcgtatgtttgatgctgcttggt	CRISPR spacer
tataattatgggtatgtttgatgatgcttggc	Protospacer
 ..  *  ** ************ *******.

48. spacer 5.1|2608359|32|NZ_CP027398|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ggtgttgccgccgctcgcttctttggcaatat	CRISPR spacer
caagttgccgcagctcgattctttggtggcgc	Protospacer
 . ******** ***** ********......

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

939747 : 967967

Cronobacter_phage(29.63%)

terminase,holin,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105874333.1\|939747_940413_-	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.6e-76	60.2
WP_105874181.1\|940503_940740_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_105874182.1\|940708_940987_+	hypothetical protein	A0A286S2B5	Klebsiella_phage	1.3e-16	51.9
WP_105874183.1\|941245_942811_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	8.2e-217	70.4
WP_105874184.1\|942807_943788_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	1.4e-105	56.7
WP_105874185.1\|943787_944567_+	antitermination protein	F1C595	Cronobacter_phage	1.3e-69	50.8
WP_146117207.1\|945168_945339_+	SlyX family protein	NA	NA	NA	NA
WP_105874186.1\|945335_945530_-	hypothetical protein	NA	NA	NA	NA
WP_004916437.1\|945688_946006_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.2e-29	58.1
WP_105874187.1\|945998_946415_+	structural protein	A0A0A1IX72	Pseudomonas_phage	2.6e-37	57.5
WP_053110992.1\|946942_947158_-	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	1.3e-11	51.4
WP_192575772.1\|948004_948568_+	Rha family transcriptional regulator	A0A1X9SFL9	Acinetobacter_phage	2.1e-21	53.0
WP_154599041.1\|948658_948799_+	hypothetical protein	NA	NA	NA	NA
WP_060561416.1\|948912_949149_-	hypothetical protein	NA	NA	NA	NA
WP_060561417.1\|949196_949379_-	YodC family protein	NA	NA	NA	NA
WP_105874188.1\|949405_949972_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	1.3e-55	72.9
WP_060561419.1\|949968_951543_+\|terminase	terminase	G8C7P3	Escherichia_phage	1.0e-283	87.1
WP_105874189.1\|951542_952913_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	4.1e-119	48.8
WP_105874190.1\|952909_954031_+	hypothetical protein	I6PD76	Cronobacter_phage	6.1e-105	51.2
WP_105874191.1\|954142_954904_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.2e-66	58.4
WP_105874192.1\|954917_955871_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.4e-126	72.1
WP_115353767.1\|955873_956158_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_105874194.1\|956197_956677_+	hypothetical protein	G8C7P9	Escherichia_phage	3.2e-31	47.0
WP_105874195.1\|956679_957030_+	hypothetical protein	I6PD77	Cronobacter_phage	5.5e-20	44.2
WP_060561426.1\|957031_957613_+	hypothetical protein	G8C7Q1	Escherichia_phage	4.6e-48	52.1
WP_105874196.1\|957609_958011_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_060561428.1\|958056_958710_+\|tail	phage tail protein	G8C7Q3	Escherichia_phage	4.4e-63	58.7
WP_060561429.1\|958750_959056_+	hypothetical protein	A0A0H5AUF4	Pseudomonas_phage	3.5e-07	35.6
WP_072502333.1\|959070_959361_+	DUF1799 domain-containing protein	A0A291AYM6	Shigella_phage	1.7e-11	50.0
WP_053110918.1\|959604_960387_+	hypothetical protein	NA	NA	NA	NA
WP_105874197.1\|960377_960785_+	hypothetical protein	NA	NA	NA	NA
WP_105874198.1\|960988_961300_+	hypothetical protein	NA	NA	NA	NA
WP_105874199.1\|961311_961959_+	hypothetical protein	NA	NA	NA	NA
WP_105874200.1\|962074_962653_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	3.3e-22	56.8
WP_105874201.1\|962715_965550_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.3e-111	33.1
WP_105874202.1\|965588_965930_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	4.6e-24	47.3
WP_105874203.1\|965926_966670_+\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	2.2e-87	59.8
WP_105874204.1\|966666_967377_+	C40 family peptidase	F1C573	Cronobacter_phage	1.6e-87	66.1
WP_105874205.1\|967373_967967_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	7.0e-60	61.9

DBSCAN-SWA_2

1097546 : 1142876

Proteus_phage(19.44%)

tail,protease,transposase,integrase,terminase,capsid,holin,head

attL 1104240:1104256|attR 1148565:1148581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072502966.1\|1097546_1098560_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	4.2e-28	30.4
WP_004918358.1\|1098705_1099752_-	aliphatic amidase	NA	NA	NA	NA
WP_014658006.1\|1100187_1100643_-	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_072502967.1\|1101142_1102345_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	1.8e-123	51.7
WP_072502968.1\|1102356_1102569_-	excisionase Xis	NA	NA	NA	NA
WP_072502969.1\|1102565_1102883_-	hypothetical protein	NA	NA	NA	NA
WP_004918367.1\|1103057_1103210_-	hypothetical protein	NA	NA	NA	NA
WP_105874208.1\|1103199_1103937_-	hypothetical protein	NA	NA	NA	NA
WP_105874209.1\|1103933_1104167_-	hypothetical protein	NA	NA	NA	NA
WP_014656522.1\|1104163_1104391_-	hypothetical protein	NA	NA	NA	NA
1104240:1104256	attL	NA	NA	NA	NA
WP_105874337.1\|1104974_1105328_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_105874210.1\|1105407_1106202_-	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	3.1e-47	44.1
WP_004918380.1\|1106204_1106420_-	hypothetical protein	NA	NA	NA	NA
WP_072502974.1\|1106412_1106718_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_105874211.1\|1106993_1107362_-	hypothetical protein	NA	NA	NA	NA
WP_105874212.1\|1107340_1107580_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_053110960.1\|1107801_1108446_-	LexA family transcriptional regulator	K7PH19	Enterobacteria_phage	2.0e-76	61.9
WP_053110961.1\|1108550_1108790_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	3.1e-19	63.4
WP_042116463.1\|1108758_1109037_+	hypothetical protein	A0A286S2B5	Klebsiella_phage	1.3e-16	51.9
WP_105874213.1\|1109295_1110861_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	9.1e-216	70.4
WP_053110998.1\|1110857_1111838_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	6.9e-105	56.3
WP_053110997.1\|1111837_1112617_+	antitermination protein	F1C595	Cronobacter_phage	8.9e-71	50.8
WP_053110996.1\|1112664_1112895_+	hypothetical protein	NA	NA	NA	NA
WP_053110995.1\|1113304_1113517_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.8e-26	80.0
WP_053110994.1\|1114300_1114546_+	hypothetical protein	NA	NA	NA	NA
WP_004916437.1\|1114697_1115015_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.2e-29	58.1
WP_004916435.1\|1115007_1115424_+	hypothetical protein	A0A0A1IX72	Pseudomonas_phage	7.6e-37	56.7
WP_191864205.1\|1115625_1115937_+	hypothetical protein	S5FXQ4	Shigella_phage	4.3e-08	40.9
WP_072502866.1\|1116757_1117540_+	KilA-N domain-containing protein	K7PH51	Enterobacterial_phage	1.7e-50	42.3
WP_181795777.1\|1117572_1117728_+	hypothetical protein	NA	NA	NA	NA
WP_072502867.1\|1117743_1118004_+	DUF2560 family protein	NA	NA	NA	NA
WP_105874214.1\|1118179_1118884_+	hypothetical protein	A0A1P8DTD7	Proteus_phage	1.2e-05	48.4
WP_105874215.1\|1118880_1119219_+	HNH endonuclease	F1C587	Cronobacter_phage	2.1e-40	66.1
WP_105874216.1\|1119249_1119459_+	hypothetical protein	NA	NA	NA	NA
WP_105874217.1\|1119582_1120059_+\|terminase	terminase	Q77WA1	Escherichia_phage	6.4e-64	81.2
WP_105874218.1\|1122905_1123757_+\|protease	Clp protease ClpP	A0A1P8DTI2	Proteus_phage	4.1e-138	88.3
WP_105874219.1\|1123768_1124983_+\|capsid	phage major capsid protein	A0A1P8DTJ7	Proteus_phage	1.2e-207	92.8
WP_014656488.1\|1125030_1125216_+	hypothetical protein	A0A1P8DTJ1	Proteus_phage	3.3e-08	66.7
WP_014656487.1\|1125215_1125542_+\|head,tail	phage gp6-like head-tail connector protein	A0A1P8DTJ4	Proteus_phage	1.4e-38	72.2
WP_014656486.1\|1125551_1125875_+\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	4.1e-38	71.0
WP_014656485.1\|1125867_1126317_+	HK97 gp10 family phage protein	A0A1W6JP15	Morganella_phage	9.4e-49	66.7
WP_014656484.1\|1126313_1126646_+	hypothetical protein	A0A1P8DTJ3	Proteus_phage	2.2e-34	63.1
WP_014656482.1\|1127187_1127580_+\|tail	tail assembly chaperone	A0A1B5FP91	Escherichia_phage	4.8e-25	47.5
WP_105874220.1\|1127636_1128047_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_105874222.1\|1128846_1129377_+	hypothetical protein	A0A1W6JNU2	Morganella_phage	5.7e-21	39.4
WP_192575773.1\|1129382_1130960_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	1.6e-50	38.2
WP_014656478.1\|1131556_1132138_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	1.4e-49	49.2
WP_105874223.1\|1132246_1133125_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	6.6e-06	35.5
WP_105874224.1\|1133206_1133605_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	3.4e-34	48.5
WP_105874225.1\|1133605_1134349_+	hypothetical protein	Q7Y3Z3	Yersinia_phage	3.2e-78	57.3
WP_001339197.1\|1134452_1135661_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_105874226.1\|1135657_1138672_+	DUF1983 domain-containing protein	Q7Y3Z3	Yersinia_phage	5.4e-108	45.9
WP_072502154.1\|1139026_1139635_+	hypothetical protein	NA	NA	NA	NA
WP_105874227.1\|1139708_1141109_+	hypothetical protein	A0A1W6JNW0	Morganella_phage	2.6e-52	31.6
WP_105874228.1\|1141187_1141469_-	DinI-like family protein	A0A1W6JP10	Morganella_phage	1.5e-12	38.3
WP_105874229.1\|1141649_1142876_-\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	3.5e-37	30.2
1148565:1148581	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1637795 : 1657830

Haemophilus_phage(36.36%)

holin,tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014656238.1\|1637795_1638137_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_004921025.1\|1638136_1638532_+	M15 family metallopeptidase	A0A0G2SSJ3	Proteus_phage	1.3e-41	65.8
WP_040133489.1\|1638594_1638906_+	hypothetical protein	NA	NA	NA	NA
WP_072502383.1\|1639155_1639656_+	hypothetical protein	NA	NA	NA	NA
WP_040133275.1\|1639652_1641164_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	5.7e-98	40.6
WP_004921015.1\|1641173_1641608_+	DUF3277 family protein	NA	NA	NA	NA
WP_014656233.1\|1641607_1642000_+	hypothetical protein	NA	NA	NA	NA
WP_072502382.1\|1642144_1643929_+	hypothetical protein	NA	NA	NA	NA
WP_004921010.1\|1644011_1644743_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	5.7e-27	34.0
WP_036940883.1\|1644739_1645078_+	hypothetical protein	NA	NA	NA	NA
WP_004921005.1\|1645052_1645877_+	hypothetical protein	Q7Y5S8	Haemophilus_phage	8.5e-72	48.4
WP_072502381.1\|1645873_1646530_+\|plate	baseplate protein	Q7Y5S7	Haemophilus_phage	2.1e-33	50.7
WP_040133271.1\|1646529_1646892_+	hypothetical protein	A0A2H5BFY4	Vibrio_phage	1.9e-12	38.3
WP_072502380.1\|1646875_1648000_+\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.9e-78	41.1
WP_004920991.1\|1647992_1648649_+	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	1.3e-35	43.3
WP_072502379.1\|1648635_1650195_+\|tail	tail fiber protein	A0A219YBC2	Aeromonas_phage	3.1e-38	45.0
WP_072502378.1\|1650194_1650812_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.3e-32	41.8
WP_072502377.1\|1651157_1651412_-	hypothetical protein	NA	NA	NA	NA
WP_014656221.1\|1652081_1652747_+	hypothetical protein	NA	NA	NA	NA
WP_036940870.1\|1653309_1654263_-	glycoside hydrolase family 6 protein	NA	NA	NA	NA
WP_004920976.1\|1654704_1656012_-	glutamate/aspartate:proton symporter GltP	NA	NA	NA	NA
WP_001339197.1\|1656621_1657830_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0

DBSCAN-SWA_4

2726023 : 2775111

Proteus_phage(21.57%)

tail,protease,transposase,portal,integrase,terminase,capsid,holin,head

attL 2717204:2717218|attR 2777321:2777335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2717204:2717218	attL	NA	NA	NA	NA
WP_004918488.1\|2726023_2726428_+	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	1.0e-09	38.9
WP_014656472.1\|2726695_2726977_+	DinI-like family protein	A0A1W6JP10	Morganella_phage	1.5e-12	38.3
WP_105874262.1\|2727055_2728465_-	hypothetical protein	A0A1W6JNW0	Morganella_phage	1.6e-57	33.3
WP_105874263.1\|2728534_2732917_-	DUF1983 domain-containing protein	Q7Y3Z3	Yersinia_phage	1.1e-194	49.6
WP_105874341.1\|2732917_2733316_-	hypothetical protein	A0A2H4IYI8	uncultured_Caudovirales_phage	1.1e-35	50.8
WP_060561555.1\|2733375_2733840_-	hypothetical protein	NA	NA	NA	NA
WP_060561554.1\|2733882_2734464_-	hypothetical protein	Q7Y3Z7	Yersinia_phage	5.5e-49	48.7
WP_105874264.1\|2734463_2735060_-	hypothetical protein	S4TSP7	Salmonella_phage	1.3e-58	55.6
WP_146117211.1\|2735062_2737177_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	3.0e-60	35.5
WP_105874221.1\|2737158_2738139_-	tape measure protein	A0A1P8DTH2	Proteus_phage	7.3e-38	33.5
WP_014656481.1\|2738160_2738388_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_014656482.1\|2738444_2738837_-\|tail	tail assembly chaperone	A0A1B5FP91	Escherichia_phage	4.8e-25	47.5
WP_105874265.1\|2738836_2739319_-\|tail	phage tail protein	A0A1W6JP06	Morganella_phage	6.1e-54	71.5
WP_014656484.1\|2739380_2739713_-	hypothetical protein	A0A1P8DTJ3	Proteus_phage	2.2e-34	63.1
WP_014656485.1\|2739709_2740159_-	HK97 gp10 family phage protein	A0A1W6JP15	Morganella_phage	9.4e-49	66.7
WP_014656486.1\|2740151_2740475_-\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	4.1e-38	71.0
WP_014656487.1\|2740484_2740811_-\|head,tail	phage gp6-like head-tail connector protein	A0A1P8DTJ4	Proteus_phage	1.4e-38	72.2
WP_014656488.1\|2740810_2740996_-	hypothetical protein	A0A1P8DTJ1	Proteus_phage	3.3e-08	66.7
WP_105874219.1\|2741043_2742258_-\|capsid	phage major capsid protein	A0A1P8DTJ7	Proteus_phage	1.2e-207	92.8
WP_105874218.1\|2742269_2743121_-\|protease	Clp protease ClpP	A0A1P8DTI2	Proteus_phage	4.1e-138	88.3
WP_053110564.1\|2743126_2744443_-\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	9.4e-174	68.6
WP_014656492.1\|2744442_2745960_-\|terminase	terminase large subunit	Q9MCV7	Escherichia_phage	1.6e-212	72.1
WP_105874217.1\|2745969_2746446_-\|terminase	terminase	Q77WA1	Escherichia_phage	6.4e-64	81.2
WP_105874266.1\|2746569_2746779_-	hypothetical protein	NA	NA	NA	NA
WP_105874215.1\|2746815_2747154_-	HNH endonuclease	F1C587	Cronobacter_phage	2.1e-40	66.1
WP_105874267.1\|2747150_2747855_-	hypothetical protein	A0A1P8DTD7	Proteus_phage	9.0e-06	50.0
WP_072502342.1\|2748046_2748814_-	KilA-N domain-containing protein	Q9MCN2	Enterobacteria_phage	1.1e-89	65.0
WP_053110992.1\|2749791_2750007_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	1.3e-11	51.4
WP_105874187.1\|2750534_2750951_-	structural protein	A0A0A1IX72	Pseudomonas_phage	2.6e-37	57.5
WP_004916437.1\|2750943_2751261_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.2e-29	58.1
WP_105874186.1\|2751419_2751614_+	hypothetical protein	NA	NA	NA	NA
WP_146117207.1\|2751610_2751781_-	SlyX family protein	NA	NA	NA	NA
WP_060561198.1\|2751959_2753168_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.3e-189	81.5
WP_060561199.1\|2753190_2753607_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.6e-45	62.8
WP_004916449.1\|2754107_2754611_-	DUF1133 family protein	A0A1P8DTF1	Proteus_phage	1.5e-66	73.7
WP_053110625.1\|2754607_2754835_-	protein ninH	A5VW84	Enterobacteria_phage	5.6e-10	61.1
WP_060561200.1\|2754824_2755190_-	RusA family crossover junction endodeoxyribonuclease	E5AGG1	Erwinia_phage	1.2e-38	65.8
WP_053110584.1\|2755186_2755471_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.1e-31	71.3
WP_105874269.1\|2755467_2755680_-	hypothetical protein	NA	NA	NA	NA
WP_192575768.1\|2755870_2756014_-	hypothetical protein	NA	NA	NA	NA
WP_105874342.1\|2756006_2756237_-	DUF3310 domain-containing protein	A0A0A6Z5B6	Enterobacter_phage	8.2e-25	75.4
WP_105874271.1\|2756242_2756689_-	recombination protein NinB	A0A1W6JNZ4	Morganella_phage	6.3e-37	57.3
WP_105874272.1\|2756690_2756975_-	hypothetical protein	E5AGF1	Erwinia_phage	1.4e-21	53.3
WP_157849596.1\|2756971_2757148_-	hypothetical protein	A0A2H4A350	Salmonella_phage	5.9e-07	52.6
WP_061064254.1\|2757144_2757384_-	hypothetical protein	NA	NA	NA	NA
WP_146117212.1\|2757370_2757697_-	hypothetical protein	NA	NA	NA	NA
WP_105874274.1\|2758202_2759111_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	9.6e-101	60.6
WP_105874275.1\|2759121_2759808_-	DNA replication protein	A0A1P8DTF3	Proteus_phage	8.5e-110	89.1
WP_041705229.1\|2760706_2761402_-	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	1.3e-81	70.0
WP_105874276.1\|2761423_2761774_-	hypothetical protein	NA	NA	NA	NA
WP_105874277.1\|2761876_2762062_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_105874278.1\|2762169_2762865_+	helix-turn-helix transcriptional regulator	G8C7L8	Escherichia_phage	2.6e-45	45.5
WP_004916513.1\|2763051_2763393_+	DUF3024 domain-containing protein	A0A1W6JP12	Morganella_phage	1.8e-36	59.3
WP_105874279.1\|2763460_2764396_+	hypothetical protein	NA	NA	NA	NA
WP_060561212.1\|2764382_2765126_+	HIRAN domain-containing protein	NA	NA	NA	NA
WP_105874343.1\|2765547_2765820_+	hypothetical protein	NA	NA	NA	NA
WP_105874281.1\|2765890_2766301_-	hypothetical protein	K7P7K4	Enterobacteria_phage	4.9e-36	58.1
WP_105874282.1\|2766462_2766705_+	hypothetical protein	NA	NA	NA	NA
WP_105874283.1\|2766730_2766931_+	hypothetical protein	NA	NA	NA	NA
WP_105874284.1\|2766958_2767219_+	hypothetical protein	NA	NA	NA	NA
WP_053110603.1\|2767283_2768225_+	hypothetical protein	A0A2I7QK72	Vibrio_phage	7.8e-21	47.3
WP_105874285.1\|2768449_2768722_+	hypothetical protein	NA	NA	NA	NA
WP_053110605.1\|2768718_2768934_+	hypothetical protein	NA	NA	NA	NA
WP_105874286.1\|2768948_2769683_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	4.8e-66	67.6
WP_192575769.1\|2769666_2770278_+	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	3.2e-52	55.3
WP_105874288.1\|2770277_2770784_+	single-stranded DNA-binding protein	A0A220NRQ8	Escherichia_phage	1.1e-40	65.3
WP_104873275.1\|2770859_2771468_+	hypothetical protein	A0A2I7QYL6	Vibrio_phage	2.5e-76	65.2
WP_105874289.1\|2771712_2771910_+	hypothetical protein	NA	NA	NA	NA
WP_105874290.1\|2771909_2772176_+	hypothetical protein	NA	NA	NA	NA
WP_004916560.1\|2772331_2772508_+	hypothetical protein	NA	NA	NA	NA
WP_072502842.1\|2772511_2772832_+	DUF2591 domain-containing protein	R9VYJ6	Serratia_phage	3.0e-17	45.3
WP_072502841.1\|2772821_2773367_+	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	1.2e-58	63.2
WP_146117213.1\|2773617_2773863_+	hypothetical protein	NA	NA	NA	NA
WP_105874292.1\|2774064_2775111_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.8e-58	37.3
2777321:2777335	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2804583 : 2815279

Organic_Lake_phycodnavirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014657832.1\|2804583_2806350_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	F2Y302	Organic_Lake_phycodnavirus	1.4e-15	32.8
WP_060560690.1\|2806352_2808095_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	4.5e-22	24.9
WP_004918075.1\|2808103_2808805_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004244560.1\|2808945_2809164_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_004918072.1\|2809230_2811516_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.4e-170	42.9
WP_004918070.1\|2811546_2811867_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.7e-15	48.4
WP_004918068.1\|2812250_2812502_+	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-15	56.7
WP_072502942.1\|2812605_2813544_-	DUF1177 domain-containing protein	NA	NA	NA	NA
WP_004918066.1\|2813687_2814437_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_014657828.1\|2814433_2815279_-	hypothetical protein	M1I6H3	Paramecium_bursaria_Chlorella_virus	1.8e-21	30.6

DBSCAN-SWA_6

3050300 : 3060890

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004917615.1\|3050300_3051509_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	8.8e-110	50.9
WP_004917614.1\|3051608_3051872_+	YbeD family protein	NA	NA	NA	NA
WP_014657709.1\|3052130_3052775_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_004917612.1\|3052898_3053864_+	lipoyl synthase	NA	NA	NA	NA
WP_014657708.1\|3054005_3054215_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	7.7e-22	79.7
WP_004917609.1\|3054421_3054892_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EL10	Moumouvirus	7.6e-17	35.7
WP_014657707.1\|3055182_3055410_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.6e-17	56.2
WP_004917606.1\|3055419_3055833_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	5.3e-14	41.9
WP_071599640.1\|3055843_3057976_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.4e-213	52.2
WP_004917602.1\|3057989_3058961_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.6e-133	72.8
WP_004917599.1\|3059687_3060890_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	6.4e-28	36.8

DBSCAN-SWA_7

3207692 : 3332998

113

Cronobacter_phage(43.48%)

tail,protease,transposase,portal,integrase,plate,terminase,capsid,tRNA,holin,head

attL 3240682:3240700|attR 3316327:3316345

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339197.1\|3207692_3208901_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_072502821.1\|3209550_3210492_-	hypothetical protein	NA	NA	NA	NA
WP_113742865.1\|3210948_3211068_-\|transposase	transposase	NA	NA	NA	NA
WP_040132433.1\|3211233_3212646_-	cell division protein FtsP	NA	NA	NA	NA
WP_014657639.1\|3212983_3213718_-	1-acylglycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
WP_014657638.1\|3213863_3216122_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.5e-81	37.2
WP_004925119.1\|3216161_3218057_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.8e-94	35.8
WP_004925122.1\|3218153_3218735_-	esterase YqiA	NA	NA	NA	NA
WP_014657637.1\|3218734_3219574_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_004925132.1\|3220663_3222040_+	outer membrane channel protein TolC	NA	NA	NA	NA
WP_127891330.1\|3222359_3222563_+	hypothetical protein	NA	NA	NA	NA
WP_004925139.1\|3223052_3223751_+	DUF1190 family protein	A0A191ZBZ0	Erwinia_phage	2.0e-34	43.3
WP_072502820.1\|3223757_3224918_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	2.2e-97	47.3
WP_014657634.1\|3225024_3225813_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_072502819.1\|3225978_3226632_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.1e-41	42.0
WP_004925153.1\|3227220_3227505_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_004925155.1\|3227599_3229030_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	2.2e-38	30.1
WP_053109743.1\|3229101_3231963_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_004925160.1\|3231972_3232935_-	inorganic triphosphatase	NA	NA	NA	NA
WP_014657632.1\|3233326_3233944_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_072503016.1\|3233953_3235198_+	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	4.9e-87	44.7
WP_004925173.1\|3235242_3235602_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
WP_014657630.1\|3235716_3236373_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_040132438.1\|3236572_3238105_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.2e-33	37.7
WP_004925183.1\|3238212_3239241_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	60.1
WP_001144069.1\|3239567_3239783_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_004925191.1\|3239898_3241644_+	DNA primase	A0A1S5RG58	Helicobacter_phage	1.5e-46	32.2
3240682:3240700	attL	NA	NA	NA	NA
WP_145928230.1\|3241761_3243669_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.6e-34	32.9
WP_072502817.1\|3243725_3245189_-	MFS transporter	NA	NA	NA	NA
WP_004925202.1\|3245442_3245715_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_072502816.1\|3245711_3247283_-	cobalamin adenosyltransferase	NA	NA	NA	NA
WP_072502815.1\|3247338_3248415_-	chemotaxis protein	NA	NA	NA	NA
WP_072502814.1\|3248452_3249313_-	WYL domain-containing protein	NA	NA	NA	NA
WP_180977800.1\|3249881_3250274_-	hypothetical protein	NA	NA	NA	NA
WP_072502813.1\|3250277_3251609_-	MFS transporter	NA	NA	NA	NA
WP_072502812.1\|3251707_3252601_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_072502811.1\|3252758_3253859_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004925228.1\|3253921_3256126_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_014657621.1\|3256649_3256949_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080728240.1\|3257526_3257655_+	hypothetical protein	NA	NA	NA	NA
WP_052127991.1\|3257909_3258275_+	sel1 repeat family protein	NA	NA	NA	NA
WP_036943102.1\|3258523_3259711_+	MFS transporter	NA	NA	NA	NA
WP_072502810.1\|3261767_3262883_-	hypothetical protein	NA	NA	NA	NA
WP_072502809.1\|3262879_3263899_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-114	62.0
WP_072502808.1\|3263901_3264825_-	hypothetical protein	NA	NA	NA	NA
WP_072502807.1\|3264826_3265417_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.2e-24	35.6
WP_072502806.1\|3265563_3265788_+	regulator	NA	NA	NA	NA
WP_072502805.1\|3265818_3266328_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	2.2e-38	47.3
WP_158514052.1\|3266335_3266488_+	hypothetical protein	NA	NA	NA	NA
WP_072502804.1\|3266497_3266848_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	1.4e-15	43.8
WP_105874344.1\|3266982_3267171_+	DUF2732 family protein	NA	NA	NA	NA
WP_105874307.1\|3267163_3269278_+	replication endonuclease	F1BUM9	Cronobacter_phage	5.8e-181	54.6
WP_072502801.1\|3269263_3270349_-	hypothetical protein	NA	NA	NA	NA
WP_072502800.1\|3270399_3271179_-	hypothetical protein	NA	NA	NA	NA
WP_072502799.1\|3271306_3271513_+	hypothetical protein	NA	NA	NA	NA
WP_105874345.1\|3271492_3271756_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	7.4e-30	67.8
WP_072502797.1\|3271860_3272889_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	4.4e-126	62.3
WP_072502796.1\|3272888_3274667_-\|terminase	terminase	F1BUM5	Cronobacter_phage	7.6e-227	65.7
WP_072502795.1\|3275616_3276648_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.0e-131	67.0
WP_072502794.1\|3276647_3277349_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.0e-61	50.6
WP_072502793.1\|3277445_3277898_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	6.3e-37	54.0
WP_072502792.1\|3277894_3278365_+\|tail	phage tail protein	NA	NA	NA	NA
WP_072502791.1\|3278361_3279030_+	hypothetical protein	F1BUL6	Cronobacter_phage	9.0e-64	55.7
WP_072502790.1\|3279054_3280176_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	3.0e-128	62.4
WP_072502789.1\|3280172_3280628_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	3.5e-51	65.6
WP_072502788.1\|3280642_3280936_+\|holin	phage holin family protein	A0A0F7LDF8	Escherichia_phage	8.0e-17	48.5
WP_072502787.1\|3280932_3281265_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.3e-36	72.3
WP_072502786.1\|3281264_3281663_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.4e-11	41.8
WP_072502784.1\|3281754_3282015_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	1.4e-25	64.0
WP_158514051.1\|3282047_3282206_+	hypothetical protein	A5X9I8	Aeromonas_virus	1.6e-08	60.9
WP_072502783.1\|3282202_3284278_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	4.7e-159	46.4
WP_072502782.1\|3284270_3284603_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	5.9e-32	62.6
WP_072502781.1\|3284592_3285777_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	9.8e-146	64.4
WP_072502780.1\|3285769_3286432_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.2e-60	61.3
WP_072502779.1\|3286435_3287740_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	4.2e-81	53.5
WP_072502778.1\|3287745_3288018_+	hypothetical protein	NA	NA	NA	NA
WP_072502777.1\|3288026_3288332_+	hypothetical protein	NA	NA	NA	NA
WP_072502776.1\|3288984_3289335_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.8e-16	57.3
WP_081368655.1\|3289367_3290078_+	hypothetical protein	R9TRQ4	Vibrio_phage	1.4e-09	25.7
WP_072502774.1\|3290043_3290583_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.5e-45	55.8
WP_072502773.1\|3290588_3292262_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.6e-157	54.9
WP_072502772.1\|3292846_3294202_-	hypothetical protein	R9TRQ8	Vibrio_phage	2.7e-22	25.7
WP_014657597.1\|3295002_3295599_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072502771.1\|3295848_3297870_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_072502770.1\|3297954_3299208_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_004925317.1\|3299488_3300448_-	TerC family protein	I7HPH5	Enterobacteria_phage	9.7e-35	32.9
WP_004925324.1\|3301071_3301740_+	DedA family protein	NA	NA	NA	NA
WP_004925327.1\|3301999_3302305_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_004925329.1\|3302310_3302709_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_004925332.1\|3302701_3303001_+	YqjK-like family protein	NA	NA	NA	NA
WP_004925336.1\|3303232_3303628_+	DoxX family protein	NA	NA	NA	NA
WP_004925339.1\|3303722_3304619_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_072502769.1\|3304755_3305457_+	pirin family protein	NA	NA	NA	NA
WP_004925345.1\|3305640_3307602_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_004925351.1\|3308250_3308589_+	transcriptional antiterminator	NA	NA	NA	NA
WP_004925354.1\|3308607_3308973_+	hypothetical protein	NA	NA	NA	NA
WP_004925357.1\|3308972_3309269_+	DUF4312 family protein	NA	NA	NA	NA
WP_014657591.1\|3309296_3310088_+	DUF4311 domain-containing protein	NA	NA	NA	NA
WP_004925362.1\|3310090_3310741_+	DUF4310 family protein	NA	NA	NA	NA
WP_014657590.1\|3310766_3311906_+	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_004925369.1\|3311889_3313002_+	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
WP_004925371.1\|3313003_3313744_+	KDGP aldolase family protein	NA	NA	NA	NA
WP_072502768.1\|3314332_3315505_-	sel1 repeat family protein	NA	NA	NA	NA
WP_004925382.1\|3316156_3317032_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.7e-50	42.3
3316327:3316345	attR	NA	NA	NA	NA
WP_072502767.1\|3317092_3318847_+	penicillin-binding protein activator	NA	NA	NA	NA
WP_072502766.1\|3318896_3319280_+	YraN family protein	NA	NA	NA	NA
WP_004925390.1\|3319300_3319891_+	DnaA initiator-associating protein DiaA	A0A067XQR2	Caulobacter_phage	2.5e-09	30.8
WP_004925393.1\|3319900_3320476_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_014657584.1\|3320536_3321262_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_014657583.1\|3321270_3321921_-	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_014657582.1\|3322154_3324500_-	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	1.1e-42	30.0
WP_072502765.1\|3325461_3329925_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_014657579.1\|3332506_3332998_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	5.9e-28	44.3

DBSCAN-SWA_8

4182749 : 4226654

Cronobacter_phage(50.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004926302.1\|4182749_4183187_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_072502615.1\|4183188_4184970_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_040132661.1\|4184933_4185971_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_014657065.1\|4185976_4187248_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_004926310.1\|4187249_4187804_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_036942310.1\|4187805_4189164_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004926314.1\|4189156_4189912_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_014657061.1\|4189920_4192536_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.0e-90	31.7
WP_004926317.1\|4192532_4193330_+	hypothetical protein	NA	NA	NA	NA
WP_004926319.1\|4193326_4193971_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_004926321.1\|4193976_4195440_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_181795798.1\|4195487_4198985_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004926325.1\|4199025_4200357_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_072502613.1\|4200369_4200849_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_072502612.1\|4200868_4202605_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_081368640.1\|4202653_4204867_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_052127979.1\|4204863_4205445_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_036942294.1\|4205455_4206649_+	hypothetical protein	NA	NA	NA	NA
WP_072152271.1\|4207179_4207578_+	hypothetical protein	NA	NA	NA	NA
WP_072502610.1\|4207574_4208516_+	hypothetical protein	NA	NA	NA	NA
WP_061064594.1\|4209389_4209659_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_072502609.1\|4209745_4210657_+	hypothetical protein	NA	NA	NA	NA
WP_004916250.1\|4210649_4210919_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004916247.1\|4210952_4211120_+	hypothetical protein	NA	NA	NA	NA
WP_040132669.1\|4211116_4212043_+	hypothetical protein	NA	NA	NA	NA
WP_072502608.1\|4212035_4212305_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_072502607.1\|4212787_4213729_+	hypothetical protein	NA	NA	NA	NA
WP_072502606.1\|4214074_4215514_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_072502605.1\|4215517_4217725_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_004923418.1\|4218263_4219436_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_014657040.1\|4219452_4220973_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_040132675.1\|4221022_4222090_-	fimbrial protein	NA	NA	NA	NA
WP_060561289.1\|4222103_4224596_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_004923432.1\|4224617_4225310_-	molecular chaperone	NA	NA	NA	NA
WP_001339197.1\|4225445_4226654_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027398

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection