CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022514	Mesoplasma florum strain BARC 787 chromosome, complete genome	2 crisprs	DEDDh	1	3	0	0

Cas Category Instructions

Results visualization

1. NZ_CP022514

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022514_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022514_1

380329-380566

Orphan

Consensus_repeat	Method
TTAGTATACTTTCATATTTATCTTCAACATCATCTAAGAATTTTAAAGCATCCAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP022514_1

>merge|NZ_CP022514|1|380329-380566|CRISPRCasFinder
CAAATAAATCTGAATATTTTCCTTCAACATCATCTAGAAATTTTAAAGCATCCATTGTTGAATCAGTTTCAGTTTCTTCTAATGTTTCATTTAGTATACTTTCATATTTATCTTCAACATCATCTAAGAATTTTAAAGCATCCATTGTTGAACTTACTTCATTATCATCATCTAAATCAAGAGTTAGTATACTTTCATATTTATCTTCAACATCATCTAAGAATTTTAAAGCATCCAT

>NZ_CP022514|1|1|380329-380566|CRISPRCasFinder
CAAATAAATCTGAATATTTTCCTTCAACATCATCTAGAAATTTTAAAGCATCCAT	TGTTGAATCAGTTTCAGTTTCTTCTAATGTTTCAT
TTAGTATACTTTCATATTTATCTTCAACATCATCTAAGAATTTTAAAGCATCCAT	TGTTGAACTTACTTCATTATCATCATCTAAATCAAGAG
TTAGTATACTTTCATATTTATCTTCAACATCATCTAAGAATTTTAAAGCATCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022514.1\|WP_106387647.1\|378323_379235_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_011183254.1\|388283_388880_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP022514.1\|WP_011183260.1\|392267_392432_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP022514.1\|WP_106387641.1\|369047_370148_-\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP022514.1\|WP_106387642.1\|370543_372085_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP022514.1\|WP_106099778.1\|379337_380042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_106099786.1\|391531_392140_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_CP022514.1\|WP_029512207.1\|374720_374972_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179056
NZ_CP022514.1\|WP_106387650.1\|385384_388291_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP022514.1\|WP_097351171.1\|376958_377213_-\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NZ_CP022514.1\|WP_106387649.1\|382655_385277_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP022514.1\|WP_081695861.1\|389426_390062_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_158695299.1\|390036_390444_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_106387643.1\|372075_373218_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|238223
NZ_CP022514.1\|WP_106099782.1\|388888_389425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_106387646.1\|377241_378339_-\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|213834
NZ_CP022514.1\|WP_106387644.1\|373249_374671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_023025774.1\|390786_391497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022514.1\|WP_106387645.1\|375007_376975_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP022514.1\|WP_144062332.1\|390529_390742_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022514.1\|WP_011183254.1\|388283_388880_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.00391e-92
NZ_CP022514.1\|WP_011183260.1\|392267_392432_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	9.20545e-05
NZ_CP022514.1\|WP_106387641.1\|369047_370148_-\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.93603e-06
NZ_CP022514.1\|WP_106387642.1\|370543_372085_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP022514.1\|WP_106387645.1\|375007_376975_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP022514.1\|WP_106099786.1\|391531_392140_-\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	5.20028e-101
NZ_CP022514.1\|WP_106387650.1\|385384_388291_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP022514.1\|WP_097351171.1\|376958_377213_-\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	2.06017e-21
NZ_CP022514.1\|WP_106387649.1\|382655_385277_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP022514.1\|WP_106387643.1\|372075_373218_+\|IMP-dehydrogenase	gnl\|CDD\|238223	cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.	0
NZ_CP022514.1\|WP_106387646.1\|377241_378339_-\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|213834	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. [Protein synthesis, Other].	1.46229e-139
NZ_CP022514.1\|WP_029512207.1\|374720_374972_-\|hypothetical-protein	gnl\|CDD\|179056	PRK00523, PRK00523, hypothetical protein; Provisional.	8.04158e-24

>NZ_CP022514.1|WP_106099778.1|379337_380042_+|hypothetical-protein
MILSKLTSNILINELIDDINSCIKNMNLVEELNQSKDYNFNNLHEIYNNKLIELFELDNNLSSINIFIEDFTQQVSKMLIDEKQTFKLNDSKEQENKKRVFEFIIFIQNKLLNYKKIIISLNWILEKMGNAIEINENNKNEFHSLVDFNIERRFKKIREDIELSSNLLDSQNLFINEFEKLNLNDKKEILEKLLNSINFDSILEMHDIDEIIRISQMSTSINFLIKFIEVINKI
>NZ_CP022514.1|WP_106387647.1|378323_379235_-|hypothetical-protein
MKYKNLEIKDNSIKLNKYQSIHFNFEGLQNKLKEIKFPVLILDTEFFNRSHDFENIKPKLYSEEEKDIVYLMNYSFAKNFNEVLTRNNHKSINSLSIKRKINDDKYDFKNQYQSMIKSFINMCVNKNIRTIIFAGQDNDKKIIEQWINTYKALFKNKKTDLFIFNKDTKSYKLNSFDIYDALEQNLSFSNYSKNGEKFYNEQNLKKGDVDDSIKIRSLKKFFDYTEDLHNKYNFKDDNITFLCSRALKLFSLENVSQYEHNKLSKSLKEARSHCYDDVLKILVLIKFLSYIMNKQMGETWASV
>NZ_CP022514.1|WP_106387646.1|377241_378339_-|ribosome-biogenesis-GTPase-YqeH
MSKCIGCGILKQNKDQNKPGYVIKPENEYCLRCFKIKNYNELINQEINAEQFILKLKTLIQNDKPKDIEFFYIIDIFDLEGSRVKEIEEAIKRYPVTIVVNKIDLLPKAVKLAKIRRYITDLFAKSAIYDANIILNTSFKNNFTNSLLNKIKKTKTKKYFIGSSNVGKSSIINSLLRANNLIPQIVESKYFNTTLDFIQIKLSSDDIIFDTPGIARSNSAANLLDKEDWKYIYFNKEVAQNTFQLKPFNSIFYAGIAWVDFEWESDEINSFHFFNNKEIKLHRTNTKNAFDYYTRNKENIVPYNLDNNFVKKEFIFNEKDINKEFEISISGLGWFNFKVKNPMKVTINIPASNVEVETTLRKPLV
>NZ_CP022514.1|WP_097351171.1|376958_377213_-|DUF896-domain-containing-protein
MSQSKEMSMPEVIQEINRLAKIKKDRELTSEESAYREELKVLYLKYFRNGFEQQLKSTKVIDAHGNDVTPSKLKNEGDKYDKQK
>NZ_CP022514.1|WP_106387645.1|375007_376975_-|transketolase
MINKNNNNLNALRILGVSAINKANSGHPGIVLGAAPIVYTLFNKIMKHNPKNPKWFDRDRFVLSAGHGSALLYSALHLAGYNLSMDEIKNFRQWNSKTPGHPESHLTEGVDVTTGPLGQGIAMAVGLAIAESHTASVYNQSDLKLVDHHTFVLCGDGDLQEGVAQESISLAGRLKLNKLILIHDSNDIQLDDKVEKAQSENMHERFKAAQWNTLKINDGEDLVAIEKAINDAKASDKPTYIEVKTIIGIGATKQGTSAVHGAPIGSDIETVKNVFDWKFDDFEIPTDIYKHWNENISKNLIIEEKWNETLNTLKTKNPELAKQFTDAINKEINFDFEALKNKTPEKAEATRVSSGNIWDSINSQVKFLIGGSADLVSSTRIKGADGQFDIDNRSGRNILYGVREFAMGAINNGIHQHGGLIPFSSGFFVFSDYMKPAMRLSSIMNTQQLFIFTHDSVAVGEDGPTHQPIEQLAMIRSIPNHITFRPADYAETLASYKIALQDLKKCPSTLVLTRQDLVQLPHNDVYEEVKKGAYIIFDQPNASVTLIATGSEVGLAIETAKRLKDDNIIAKVVSMPSTNLFDQQDQSYKDKIIDKSTLRVSIEMGTTYGWSKYTGDNGLNIGIDVFGASAPANTVISQYGFTSDQIFNKIKKVIK
>NZ_CP022514.1|WP_029512207.1|374720_374972_-|hypothetical-protein
MVLFTTEFSAGGLAGMLIGVILGAIILGAIIGFFITRAMVKKQLKDNPPVTEKQIRAMYMSMGRKPSESDIKKTMRAMQQAKK
>NZ_CP022514.1|WP_106387644.1|373249_374671_-|hypothetical-protein
MNEIENIWNWINAEIESYNKKATSVLKIIENSLDSKKPIFINERTIANEINNMLEKINLKDKYILSEFHLKNQKQLSDEEKKKIAKEIPDYKEESNLFDFYPDTFLSFINSQDQRENFYIEYKVDKKFSYVKMAADYLKFKYYTNNQKSFNKFIYVIFNITDDNIKLPGFLNKSGIKYINKKIEKHEFLNEKFNIYIFDNLKKSVSNEIDLETIAIASKISEKIDKSNFEILSNKNENFNENEYLKKIKKFKYGKNIFFSKKIINKFVEIFNIYESMQQTENLTISLNENSYITIDQFQNKKDINENIFVDELSNHFENQIVLKSKENVEEMKRLYAKEFNISLARSEWILIVIDKFSKLNSIQSDIFKNISENEIQQYENLYKKIDEMYSKNISNFNQLALGLIYFIVKIYLNIGKIDNDKFVVSNEYKNYEFKKEIQNEMKFIYKKLKIKFDFKKPFDEFESCIDIINSII
>NZ_CP022514.1|WP_106387643.1|372075_373218_+|IMP-dehydrogenase
MRINMNKDLNGKIINEAITFDDVLLVPNYSEVLPHEVCLKTKLTKNIELNIPIISAAMDTVTESELAIAIASIGGIGIVHKNLTIEQQANEIKIVKSVKPTDEFPNACVDANGFLRVGGAVGVNDETLTRVEGLISAGIDVLVVDSAHGHSKGIIDIVKAIRVKYPNLDIIAGNICTVEGAEALYKAGADCVKVGIGPGSICTTRVVAGVGVPQITAINDVYNWSINKDVTLIADGGIKYSGDVVKALAAGAHSVMLGSMLAGTEEAPGQEVIINNKRYKTYVGMGSLAAMKRGSSDRYFQKGAKKLVPEGIEAVVPFKGTLEEVIFQLVGGLRSGMGYTGSNTIEALRHNAKFVKITGASLKESHPHDVEISAEAPNYK
>NZ_CP022514.1|WP_106387642.1|370543_372085_+|glutamine-hydrolyzing-GMP-synthase
MKNTQILILDFGSQYTQLLARRVREANIYTEVLPFDTSIEKIKEYPLLKGIILSGGPSSVYLQNAYKIDSEILNLDIAILGVCYGMQLLTQYFKGAVELADEQEFGKAIITIDDKKNPLFKNVNNDSQVWMSHADHVTKLPVDFKQIAHSNASIAAIAHNTKPIYGIQFHAEVTHSLQGKEMLENFLFDIAKCNKDWNLDDFIDQQIKEIKETVKDKQVILGLSGGVDSSVAAAIIGKAIGKQLTCIFVDTGLLRKNETIEVMKAYETNFDINIKLVEASDLFFSELKGIKEPEAKRKIIGKCFIDVFTDAARQHKDADFLAQGTIYPDVIESSSHGASSKTIKSHHNVGGLPEDLKFKLIEPLRNLFKDEVRQVGFKLGLPEEMINRHPFPGPGLGIRVIEEVTKEKVEILQEVDAIFIKKLREWNLYNSVSQAFVTLLPVKTVGVMGDNRTYDYVVALRSVNTIDFMTATSTHFPWEFLDEVVNEIINKVDNVNRVVYDVTSKPPGTIEWE
>NZ_CP022514.1|WP_106387641.1|369047_370148_-|acyltransferase
MKNRNAALDIVKFFLSLFVVIYHQYNAEGMLFNDNFGQFDSWLFNIFVLFLVCPVPLFILISGYLSSFSKKDKLNSFFKLGIDILLYWVLAIAVTIILISSADIKISLNRTLTFGGRDWWYVWAFLIIKSISPILINGIKKTDKFISLTAIIFLVFMRIFFIQTTLSELFNGGSILAFLAIYLIGIWIGVHGKEILNSKRNYLCSIAICLSLMLIGIIFKSFSYILGFNLSKILSFGTPTHLIPLIFSICLFNIILKFNLKETKMTKLIASITFPIYLFHFFFEITLNQLIWSKVGIDKSNIGMYELNFFFGIITWLTTISFSLLIIIPQSFISKWLNIALWSTINLTIKKWSYIGEKKYKEKREQ
>NZ_CP022514.1|WP_106387649.1|382655_385277_-|valine--tRNA-ligase
MKKELEAKYSYEIVEENRYEWWIQNEYFKANPDSKKPKFSIVLPPPNVTGKLHIGHAWDGSLQDAIIRFKKINGFDVLYLPGMDHAGISTQVKVEAKLREQGISRFELGREKFLEQAWKWKHEYAAIIRQQWSKLGLAFDYSMEKFTLDDDINKIVTEIFVDFYNKGLIYKGKRIVNWDPMQKTAISNVEVIYKEVEGFMYHFKYMIQGTNEFLNVATTRPETMFADQCLVVNPKDERYTSFIGKKAINPVNNQAIPIIADDYVELDFGTGVMKCTPAHDLNDFEIAVRHNLEKPICMNEDGTINEMGGEEYQGLDRFEARNKIIENLTKAKTFIKAEPMIHQVGFSERSNAIVEPYLSDQWFVKMDSFADMILKLQESNDKIKFFPERFDQVLKKWMENIHDWTISRQLWWGHRIPAWYNKEDKTKIYVGMEAPKDAENWIQDEDVLDTWFSSGLWPFATLMRGEGFESKYFKEYLPNGVLVTGHDIIFSWVSRMIFQTIEYTGQIPFKDVLIHGLVRDEHGAKMSKSLGNGIDPMDVIANNGSDSLRFSLLTNSTPGQDIRYSDSKVKAAWNFINKLWNASRYVLMNLEEDFKPWEEQAILNSNSLNETDKWVLTEFSKVSKQVNYLIDKYEFAIAGKMLYDFVWNTYCSWYIEFAKVNLNNPKTKEATQQTIVYLLKNILIMLHPYLPFVTEHIYKTLDMKNSILEESWFDKEFVFETDYINVVIELINSIREFRATNNIKNNVVLNWNATNGNLEIITKYNLEINNFLNEFVNANLSINESLVSETTSLSVLDFFIEIPNDDFIDKEKMLEELATKKKELENEISRSERMLSNENFISKAAPSKIEEEKEKYELYKQQLELIQDKLNKM
>NZ_CP022514.1|WP_106387650.1|385384_388291_-|cation-translocating-P-type-ATPase
MDSWESSQIKEIENKLDTDIKTGLTEEEATKRLIENGKNELPTAKVTPWWVTFLHAFVEPLQLILMFAAVISVVAPLISSPGEKIGFHEFIDFVVIMLIVIVDAVLETVQTVKARKSVDALKSLSKPKAVVLRDHNQKEIDASDLVVGDIVILEAGKYVPAELRIVQSADFMIDEAILTGESVPVEKTHKAIKETTILAEKTNIAFMSTFTTAGRAVGIVIGTGLNTEIGKISEAIDKNEETETPLEKKISKFGYVISCVAGLIGIFVFLLLSLVGGFEAWASYLMVAITLAIGVIPESLAAVISITLSFSTKRMANNNVIVKKLASVETLGSVNVICTDKTGTLTQNKMTVKKVIDNNRIMDSDEYLDLDKSIQKELLLKALVLPNDSITEGNERIGDPTELALVDFAELMGVDELVYRKKFERIDEIPFDSERKLMSTLNTVDKKTIAFTKGAIDQLLSICDHIMIENKVIKLTESHKHEIMRASINLSDDALRVLAFAYKEVKNNKLEEKGLTFIGAVAMIDPVRKEAVQAIEEAHAAGVEVCMITGDHAITALAIARDLGLAYEEKQVISSDKLDTMSDAELEEVIDNIRVFARVNPEHKVKIVATLQKKGYIVSMTGDGVNDAPSLSKADIGVAMGITGTDVAKQASDVILTDDNFATIMTGVNEGRNVYQKIKRAITLLMGFNLANVLSILIISLIFKISPLEATNILYINLIVESCLAIAIGMGPLDDTLMKLKPQVGKNGLLKGLILPIIKIGVLSALCSVGSFFIGMMATNTGEWNTILLDKNIINVATDSWLDQIHAIMNSSLSAIERNKLLDEYIVFGRTAMFITIVMSPLFFAHLIKISNWKASKKIKLQISKPLIYASLIALVLSIGVITIPGLNDSILGLVGYSKATSKWTSDNIWIMFVAFAISIVPFLLILMIDTIVFYSYHLSVGNWQKNQILIAEMINQDAKEQNKKRKK
>NZ_CP022514.1|WP_011183254.1|388283_388880_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MFKQSVFIKSAANKSGWIEDNIPEVCFVGRSNVGKSSFINTLANNKKLAKVANTPGKTRLLNFFDINNSSFRLVDAPGYGYAKISNSMKVEFGIMMEDYLTTRENLKLVCMLVDLRHKPTNDDVQMYDFLKANDIPVLMIGTKLDKLKRNEIAKNEKLIKETLEFDQNDVFVKVSNLDKINIKESYDALIRLLEVENG
>NZ_CP022514.1|WP_106099782.1|388888_389425_-|hypothetical-protein
MKLIIFPLLISLILMAYAFYIAIKDWKYFKQIQKLIKQDSRYFQNSKLLYICLGYLISLMIFSLAFVIITIICLVFMTNVMLLVQSIICVIYMIMLIIWITLIQNKIKSIYVVVKNSKIVIWDKVFGLEEIEIIKNDIKRKKITFKVKEIEGYDIIKVSYHWELKDFLIELKMKTEFI
>NZ_CP022514.1|WP_081695861.1|389426_390062_-|hypothetical-protein
MKWILKKNKMDSKFIIAICIIILYAIILLIVGILSYVYSVKHKPFKVINDEYLKEIAEYKKVEDEILRKLKPIKTKFELSENENIYFVDELEVSFNEIENKKNKKKEFDDEYDQYIKNLKKNYSLFKIKGKQNELEKTLTYISNKRIVLDNGTEFKIIKFNNVILVENYVWNFNGEYLKTIYLKTKNEEIYFVTNDLKLKSIISKFRLENE
>NZ_CP022514.1|WP_158695299.1|390036_390444_-|hypothetical-protein
MSKFLAPNEFLFKFTDSIEAKSKANEIIVNQENILEIFKEIIIKKVNEVYSESLSKFKNVYDNENEFIKVLKIAFEESNLNDLREASKLMINLLKIDRTINDEKKYEFLELLNKAESLINLIDIWSQYEMDFEEE
>NZ_CP022514.1|WP_144062332.1|390529_390742_+|hypothetical-protein
MSLSLFNNLVKSSNSSTSFKLSKRLVNSFLFFNSASTFSKLEITIAKPGSKKSTSISLFIFFLLLKYNYI
>NZ_CP022514.1|WP_023025774.1|390786_391497_+|hypothetical-protein
MIQIFKLKELNQVELSHLEELNSWWDKPVDKKIAKCKLFISKFGLQPNDYITFDSLKEVNFNDYIRGVNNYLNFYTPKLKTIVSERHAFKKFDKSIINYMQLNGYTASISTIASFYTEEVDHDLNKFNKIDAINFANKVLLEKWTKFKREVLSTFGGNEIIKDVIKGIFENEVIYDGVFFDSRIIVNTIVKYASNLLKKTEITEKQFLNIMYLAYLQSNFIESFIYIYKGFTINLK
>NZ_CP022514.1|WP_106099786.1|391531_392140_-|short-chain-dehydrogenase
MKVLILGGHGTLGTAIVKELNKSKKEYEIITAGRKSGDIQVDMTSKESIEAMFQKIGNVDHIVNAAGSAAMAPLENLTQEDIKFSLSSKLLGQVNMVLIGSKYLNEKGSITLIAGIIKEEFIKMGTMYALTNGAVASFAKAAAFDVEKDIRINCVSPSVFNESMVEYGEYFKGVKPVPVEKAALAFVNVIESDINGEEIKVY
>NZ_CP022514.1|WP_011183260.1|392267_392432_-|30S-ribosomal-protein-S21
MASIIVHEGESIEKALKRFQKVASSNKAEARKREYHLSKKEKRIYKQKQNRKYK

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Crispr_ID: NZ_CP022514_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022514_2

721574-721792

Orphan

Consensus_repeat	Method
TTTTTTAGCAGCTGGTTT	CRT

4 spacers

The CRISPR arrays of NZ_CP022514_2

>merge|NZ_CP022514|2|721574-721792|CRT
TTTTTTAGCAGTTGGTTTAGCTGTAGTTTTTTTAGCAGCTGGTTTAGCTGTAGTTTTTTTAGCAGCTGGTTTTTTAGCAACTACTTTAAGTTCTTCAGCTTTAACTTCTTCAGCTTTTTTAGCAGCTGGTTTAGCTGTAGTTTTTTTAGCAGCTGGTTTTTTAGCAACTACTTTAACTTCCTCAACTTTAACTTCCTCAACTTTTTTAACAGCTGGTTT

>NZ_CP022514|2|1|721574-721792|CRT
TTTTTTAGCAGTTGGTTT	AGCTGTAGTTTTTTTAGCAGCTGGTTTAGCTGTAGT
TTTTTTAGCAGCTGGTTT	TTTAGCAACTACTTTAAGTTCTTCAGCTTTAACTTCTTCAGC
TTTTTTAGCAGCTGGTTT	AGCTGTAGTTTTTTTAGCAGCTGG
TTTTTTAGCAACTACTTT	AACTTCCTCAACTTTAACTTCCTCAAC
TTTTTTAACAGCTGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022514.1\|WP_011183561.1\|714570_715278_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350157
NZ_CP022514.1\|WP_106387772.1\|718031_719567_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
NZ_CP022514.1\|WP_106387777.1\|729065_730262_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP022514.1\|WP_011183558.1\|711475_712189_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP022514.1\|WP_106387771.1\|716189_718028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226962
NZ_CP022514.1\|WP_106387770.1\|712864_714541_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP022514.1\|WP_097351328.1\|726304_727027_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|238693
NZ_CP022514.1\|WP_106387776.1\|727032_729003_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP022514.1\|WP_106387769.1\|712278_712896_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP022514.1\|WP_023026248.1\|711278_711476_-\|DUF951-domain-containing-protein	unknown	unknown	gnl\|CDD\|377606
NZ_CP022514.1\|WP_106387775.1\|722408_724289_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP022514.1\|WP_011183562.1\|715306_716206_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NZ_CP022514.1\|WP_097351657.1\|732346_732937_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP022514.1\|WP_157775906.1\|724395_725073_-\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP022514.1\|WP_011183570.1\|730265_730988_-\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP022514.1\|WP_097351331.1\|730987_731731_-\|DNA-polymerase-III-subunit	unknown	unknown	gnl\|CDD\|379051
NZ_CP022514.1\|WP_106387773.1\|719576_720950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380577
NZ_CP022514.1\|WP_097351327.1\|725062_726211_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NZ_CP022514.1\|WP_011183556.1\|710182_711277_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP022514.1\|WP_011183572.1\|731709_732345_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814

Protein	Function_ID	Function_description	E-value
NZ_CP022514.1\|WP_011183561.1\|714570_715278_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|350157	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP. Escherichia coli purine nucleoside phosphorylase (PNP)-I (or DeoD) accepts both 6-oxo and 6-amino purine nucleosides as substrates. Trichomonas vaginalis PNP has broad substrate specificity, having phosphorolytic catalytic activity with adenosine, inosine, and guanosine (with adenosine as the preferred substrate). This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	6.47375e-127
NZ_CP022514.1\|WP_106387772.1\|718031_719567_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NZ_CP022514.1\|WP_106387777.1\|729065_730262_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	9.51467e-69
NZ_CP022514.1\|WP_011183558.1\|711475_712189_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.23349e-68
NZ_CP022514.1\|WP_106387771.1\|716189_718028_-\|hypothetical-protein	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.05722e-58
NZ_CP022514.1\|WP_106387770.1\|712864_714541_-\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.41803e-25
NZ_CP022514.1\|WP_097351328.1\|726304_727027_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|238693	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.	7.63179e-116
NZ_CP022514.1\|WP_106387776.1\|727032_729003_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP022514.1\|WP_106387769.1\|712278_712896_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	9.14866e-39
NZ_CP022514.1\|WP_023026248.1\|711278_711476_-\|DUF951-domain-containing-protein	gnl\|CDD\|377606	pfam06107, DUF951, Bacterial protein of unknown function (DUF951). This family consists of several short hypothetical bacterial proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids.	2.82801e-15
NZ_CP022514.1\|WP_106387775.1\|722408_724289_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP022514.1\|WP_011183562.1\|715306_716206_-\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	1.75057e-52
NZ_CP022514.1\|WP_097351657.1\|732346_732937_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.46279e-66
NZ_CP022514.1\|WP_157775906.1\|724395_725073_-\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	3.4309e-45
NZ_CP022514.1\|WP_011183570.1\|730265_730988_-\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	1.59746e-76
NZ_CP022514.1\|WP_097351331.1\|730987_731731_-\|DNA-polymerase-III-subunit	gnl\|CDD\|379051	pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.	4.70183e-50
NZ_CP022514.1\|WP_106387773.1\|719576_720950_-\|hypothetical-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	2.14839e-15
NZ_CP022514.1\|WP_097351327.1\|725062_726211_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	8.44203e-141
NZ_CP022514.1\|WP_011183556.1\|710182_711277_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP022514.1\|WP_011183572.1\|731709_732345_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	2.09695e-84

>NZ_CP022514.1|WP_106387773.1|719576_720950_-|hypothetical-protein
MKKLLLALLSTTIISTSATTVISCGTEKHFGEIYLITDSGKVDDKSFNQSTYEAGTEFVQEILGINQKIAYIQPESTAPKTMKRAYKTAESNNAKTLLLPGFHHAMPGEGEHQAAEVMKNSGSTIILDSNSAANNEIGVVFRGDVSGFYAGISSIIYSLKNENYTNNTLSLGAYGGVSNPASVDNFIVGYLASIEVYNYLAKDIDFLNYFDIPEAARNVTVTKAQTGWPKSKDDTTWFSNSFLIGQSKLVLDNLRDTSKSIKPNVLMPVAGPQTSDALSYDTSWKVIGVDTNQAESYGKDAQNRFITSAEKDLKNAAIVSLAHTPEWMNNEQYPDILKKVDEGYKDKIQITKEVITDNKSEFVDVNIGDKELWTGTDVWVNGTMSYGGSNLLDEDLAIEIKKYFSAEALTEASKSLFSKYINGTIPSTGTIIAQEPIKDYAETILKELNESTKKINE
>NZ_CP022514.1|WP_106387772.1|718031_719567_-|ABC-transporter-ATP-binding-protein
MKNINAVEMKNISMIFNKKIIANKNINLDVKKGEVHALMGENGAGKSTLMSILFGIYEPTEGNIFINGKEEIISSPVKATKLGIGMVHQHFKLVDIFPVWKNIILGSEETQYKQIINKKKIIEDLTSIMKEYNLEVDLNAKVKDISVGMKQRVEILKILYRKAEIMVFDEPTAVLTPSEIDGLLKVIKELKDMGKTIILITHKMAEIKEVADRATIIRKGHYVGTFDVKKTSASKLAEAMVGRKIIEIKNTHKQNNNEDLIVIKNLNVKKHSNNKVLGLKNFSTTIKAGEILGIAGVEGNGQIELAEALSGMTKVDSGKIYVNDKNITHESISKRYNVHKMGFIPEDRHKFGLVLDANLITNVALQDISTKKYSKHGFINKTAMQTHTQKIISKFDVRNADAGFAIARQLSGGNQQKMIIGRELSRDNNFIIIFQPTRGLDVGSIEFIHSEILKAKEEGKAILLISYELSEILQLSDRILVLNSGQIVGEISGKNATREKLGEMMVSSVVE
>NZ_CP022514.1|WP_106387771.1|716189_718028_-|hypothetical-protein
MRKINQWKFKTKSIAYIKSTTFKTKTSYVKVSFISIILGLLCGIIFLYCFGMNGFGFIFSSLIKPFTSPVEPEGTIILLAVFILLGLGLALGFRIKLFNMGGSGQAIGGLLITYLFLNAVTGGSDFSNLPGGYGILLFLIFIVSGAIVSSLTGILKVLFNIHEVATSIVINWILWYLLKYVLFIKFDTQLNSPNLPEVFGSQLWLFAIIFAIVSIVLVFVICETTTVGYKYKVVGTQSTAAKYAGIKTNSFIIGVTALQGVFISAAGFFYYFGLKSNISVTNDIMPLLGFDGIPIALVAFNNFLGIIPVAILWAVLKDGIQLTMNSPQYMGLPSETSDLLFGIIILFSTMYLLLMKINIFNYVNIIIHKIRDPKFKTEIEIINSDIKELKKEKNILILNLDSTNEKLKIKELKKQIQNKSENLEILRDELNSLTNEYKENKAFQISKIKNKIKDLKLEKHLFINKELDKYNEHSIKGLKKVYEGKYNSTTFPILDQVVSIESEIQNIKESLSNSNIKEQEKLIAKKNKLELKAVSLINKQESQIKYFKNNFASTKQEAKTYLNDLKLIYKKEIKELEAKKGSRTFKKLKIRKLKIDLLEKQMEVVKIYGSNI
>NZ_CP022514.1|WP_011183562.1|715306_716206_-|ABC-transporter-permease
MEAIFSLALGFFVVFTLAAISGMFSERSGVVNLGIEGFMTIGALAYVSFCFMVKKTSNNVEDLHVLYLLIGALFSMVVAGLFSLLQTLMVLKLKTDQIISGTVINLLAQGIALFIVHIQGFGTGGTILGSLSPKLISLNYFIAYAIFTMLVTVTIGLYFTFTKVGTRHIAAGENPQALDAAGVKVNRYRFVCIIISGAIAGLAGTMFVVTQSLQNFNGSVQGLGFIALAIMIIGQWRVSLIVMFCIIFSIMFSIGQRITGWNSLPRALPFIMSIVVMVIASKWSSPPQASGVPFDKTLR
>NZ_CP022514.1|WP_011183561.1|714570_715278_-|purine-nucleoside-phosphorylase
MTPHISAKKEDIAKTVLMPGDPLRAKKIAETYLENVKLVNEVRNMFMYTGTYKGIQVTIAGSGMGCPSIGIYSYELFNFYNVENIIRIGSAGSYKEEIKVYDVYNVKEAYGDSNYAKLAANIDDKVIKAGDKLYSLIEKIAKDKKIKTLTGRAHSADVFYRHDDITEFVKENNLDVVEMESVALFANAIKAKKQAACLLTISDNLVTKEVTTAEERQNNFMQMVEIALDAAVESN
>NZ_CP022514.1|WP_106387770.1|712864_714541_-|APC-family-permease
MCLFTWTCFASIFLIYFFITNLKKKEKKLMFKKRDKSSKFYEFWYLFLLIVGICIGSGIYAKNKELLEQTKSPWIATVLWLVIGLVCVISIVVFMEIAKSTEKEGNGTVSNWCKLFINRKFASFVSVLYTTIYMPAYQSIFVSLTIAYFLMATGLTPNPGALLSIYLIFGVGLYVLFAVINIFTPNLSRKMQFWTMFIKFIPLILAFFAGFILFAINQGGNGMSIPMKEGQTEPTKLVFMNFLGGIGAILFSFDGYIFTANTQKSAKNKKVVPVAIILGLLFITLFYVLMAFSLFLGGDGTVQTVLVKVFSGFKNTDNKQAEKAAEIIVFTIMFLIFFFNINMFTHFGISNLLSDHNMKLIYLKKGKASFKTSAFTQLAISCSFYVVLILLGALTNWNSGSITGPITYIENMSSACVVLIFAVIAFLIISAMINRKTQKVKVEKVKFFWPAAIISSVLLLFFTTCGLIVLLAPQLVNPEKKDWTTNGGMMFTIIFIVTLLVTIVIWLLQERMFKINPFENGFEGEIDKDMKVNNWMAAKEAQELRELNNETKTKIKST
>NZ_CP022514.1|WP_106387769.1|712278_712896_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKQKQKLNLPNWLTLIRLLLVPVVVMLVISNICDWDKSFIIGTDTSTFHITLTMLLAGIVFIVASFTDFLDGYLARKNNQVTEFGKFFDPIADKLLVNATLILFASSISIIPVWVTLVLILRDIFVDFIRMILSSKNITLSAGIFGKLKTVFQMIGLSILFFFSSFTLHIEVWQEQLILIPMYIAVAFSLYSGLDYFLKARKNLF
>NZ_CP022514.1|WP_011183558.1|711475_712189_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MWTMFNNWKIFEDNLGFVPSEEIKDKLNEYYKILVEENLKYNLTRITNEEDVYEKHFLDSLLFTKETKIDNQKIIDIGTGPGFPGIVLKIFFPETDITLIDSNNKKINFLNIVIKKLNLKQIEAKHARAEELARIENEKYDIAISRAVAYLDVILELAVRFLKIQGKLILLKGPRADEEIKNSKNIDQKLKIKLTNKQSLADTGFGERINLFYEKEKSTPELYPREYAKIVKESGKK
>NZ_CP022514.1|WP_023026248.1|711278_711476_-|DUF951-domain-containing-protein
MHTELQIGDLVVFKKSHPSGTIKWELIRIGALYKFKSTDKFDLFIELRRSVLDKQIKQIIKKEGE
>NZ_CP022514.1|WP_011183556.1|710182_711277_-|redox-regulated-ATPase-YchF
MSLKVGIVGLPNVGKSTLFNAITNSNVEAANYPFATIEPNVGVVEVPDERLDKINEIFNSKKKIATTIEFVDIAGLIAGASKGEGLGNAFLANIRETDAICEVVRCFENKDITHVEGSVDPIRDIEIINLELMLSDEATIKKRIERITPKVRGGDKTLVAEMEVLKKAAECLDSNKLLNTLELNDEEDKILKGFQFLTAKTFIYVANVNDDELIEDNEYVKQVKEFALNNNASVVKICAKIEEDLSEATPEEKAEFLNDLGVKYSGLEQVIKAAYEALDLETYFTAGPQEARSWQYKKGWTAPQCAGVIHTDFERGFIKADIYNVQDLIELGDEKKVKESGKMRLEGKGYIMQDGDVCFFKFNV
>NZ_CP022514.1|WP_106387775.1|722408_724289_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MNKQFDVIVIGGGHAGVEAALASARLNKKTALINLYKDRIAAMPCNPSVGGPAKGIVVREIDALGGEMAKAADKTALQTKLLNSSRGPGVWALRVQSDKEEYSKYMQKIVEEQINLQLIESIATDLIIENNTVTGVLLKDGEILKSKCVVLTTGTYLKSEILTGHEKISSGPNEEPTSNGISESLKKSGVELFRFKTGTPPRIYKNSVDLSKAIKEPGTDAKLAFSFSTNEYTPIEKQELCYLIHSSSETKKIIEDNLTKSAMYSGKVESIGPRYCPSFEDKIVRFSSKETHQIFIEPESISGDAWYIQGFSTSMPTDVQLLMIRSLPGFEKAEVKTWAYAIEYDCVNPMQLNPSLEIKNINNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPLILRRDEAYIGVMIDDLINKGVWEPYRLLTSRAEHRLLLRNDNAEHRLKEKGYEIGLIKQAEYNEYLKYTEEINNAIKELEEIRFTPKSELAIKLKELGQADLSHGYSGIEILKIPTVDIEVMIPYISSLQNLKNNQLQSIVIETRFAGYVKTERKTVERLVKLEKKKIPSDIDYDKVENLATEARQKLKKVKPLNIGQASRITGVNPADIQMLLFYLKNNYATEQK
>NZ_CP022514.1|WP_157775906.1|724395_725073_-|copper-homeostasis-protein-CutC
MQNNKVLEVIAADINDINIINLSNADRIEFCKELKKSGFTPDYEDIEEACKISKLPINVMVRNTDRDFCYTDAEFNQMLEDIKFINKTKANSIVIGILTPDNKIDVERMKIVKESLSENIKITFHKAFDLVEDKIEAVKLLEDIGISTILTSAGNKIDDNLELLKELTNSTEIEILAGGGVNWNNFTNVKDCSNSIHIGTLARVNNSWDDSCDIDFINKAKNLLT
>NZ_CP022514.1|WP_097351327.1|725062_726211_-|N-acetylglucosamine-6-phosphate-deacetylase
MILKNARIVLENKIIENGQILIENGRIAEISENEIVNNNEEILDLKGNTILPGFIDCHVHGGYGVDFETGNAKRFEIFSKNVVKEGITSYIQASVTNSLENNLKYLKEFSDFSLSKNNGAKCLGIHMEGPFISAEKKGAHDPNLLVNPDIELMQKFIQTSGGNVKIVTYATELQNGEFTKYLINNNIIPSVGHTNQEAWEIEKDYNLGLRHVTHLFNGMSGVDHYRPGLAVSALNHKDMLVEVISDGIHLKKEILDLIYKTKGPENICIITDSINAKGLEDGQYKIGDLEVVKKGIEVKLKSNGVLAGSGATYNHNVKFYKESSNIELTDLIKMTSINIAKQLKIYSETGSIEVNKKADLVVLDKDFNVLYTFVEGNKVYAK
>NZ_CP022514.1|WP_097351328.1|726304_727027_-|glucosamine-6-phosphate-deaminase
MNIIKLANEVEVAKKAAEIIKEEVKQNKNAVLGLATGSSPILTYQNLINAFKANEVSFRDVKTFNLDEYEGLQPTHPQSYRYFMNDQLFNHIDIKIENTYVPEGINNLRPESYDELIKENGGIDLQLLGLGVNGHVGFNEPGTSFESLTSEVDLAQETIEVNAKKFFNGDLSEVPTKAYSMGLKSIMNAKKILLIATGESKAEAINALLNATISEDWPCTILRNHKDVTIIVDSEAGKLI
>NZ_CP022514.1|WP_106387776.1|727032_729003_-|ATP-dependent-zinc-metalloprotease-FtsH
MKTKKSKSTLWFWLIILLAIIVTIIIIAVTVKGTTQVISGTTFESWLLKHKPETNPSSDLFWKNVIIYQGSNGTVVVKGSYLNETGGKFVNFVAYLNTTQFDSIMKSIGFGTAYPWPSLVYQGSVGMALLVSLAPLLIYVLLFGGIIWFMMKSSSGAGAGAGNIFGMGKNRARAEKSDVKFANVAGIEEEKSELVELVDYLKFPAKYAEAGARAPKGVLMEGPPGTGKTLLAKAVAGEAGVSFFSIAGSEFEEMFVGVGASRVREMFNDAKKAAPAIIFIDEIDAVGRKRNNGMGSGGNEQTLNQLLVEMDGFGTNSGIIVMAATNRADVLDPALLRPGRFDRVIQVSLPDIKERKAILELHAKGKKIDGSVDWYRVAERTPGFSGAQLENVLNEAAILMVREKRDIITITEIDEAIDRVVGGPAKKSRAMTKQDKDIVSYHESGHALIGLKLDSASKVQKVTIIPRGNAGGYTIMTPKDETVFSSKKDLFATIAGYLGGRAAEEIMFGKENVTTGAHDDLDKATNIARRMVVQFGMSSLGMTKFLTMAEESYGKMEGTYSDETAARIDAEISKILEESYKIALKIIKENMETLELLAESLRVLETITAEQIEYINVNKKLPEEVLEQKNRMAKEDEKIKKGEIIDIKVEDLDIEE
>NZ_CP022514.1|WP_106387777.1|729065_730262_-|tRNA-lysidine(34)-synthetase-TilS
MERFKLNTTLSYLVAVSGGPDSMFMLNELIKMNIEEIVVCHVNYNFREDSWKDQKLVEDFCLKNNLKLEKLVITQDYSKLKENFESWARNIRYDFFVEISKKYNIQNVLIAHNRNDLVETFLLQQDRKGYVKHYGLNKTSTYKEITIVRPMLNILKSEILKSLKEENIAFVIDSTNEDKKYKRNKIRANLSESTFNDFEETIKKLNKKLETINLEVNWYVNNNMSADELKINKNLQDQDLEFIQRTIYKWLEVIKKDFVIQNRRNKTIFEIAKNIKVSEKVFWEINIGEYSIIKDYENLFIIETKAIQPKTILIKSKEDLYLSEEFINWLDLLNAIKRNKENYPYVITNDFLTYKLNTYMFGKKTNRYLIDKKIRYKNRMLKAVVYSTKTKKILNTIK
>NZ_CP022514.1|WP_011183570.1|730265_730988_-|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MKILNDLLGYEDRKIYQDSEMFNFTLDSVLIARFINLKSSIKKIVDFGTNNAVIPLIVSKYTNAKIVGVEIQTKAAELAIENIELNKLTEQVEIVNSDIKTYAKEMANKFDAVICNPPFFKKHEESKVKKISEEVVNARHETLITLEEIIKNAGLILKNGGSFTLVHRPERIGEIINLMYKYKFAPKRMQFVHSKANDEAKTVLIDAILEGNEGMQILKPLISHKDDESYTNELLRYFKD
>NZ_CP022514.1|WP_097351331.1|730987_731731_-|DNA-polymerase-III-subunit
MKKREALEKFVEQLKNKKMFSSILISNDNQETLNDFANNLSRTIFCENLGIEKDSCDNCKRFENKSLSNFVVLGDGSLAINKNDVVELMQKFSLTTNEVNKFKVYVLSNAENLKNESANSLLKFIEEPPENTIAILLTKNKSQVLPTIKSRCKLIVLENENQDESPKNIIEELLEKDKNSILLANADLKKIDKSELIAMLEVAYNRTIIKKYLNLAEATLQLINDLKFTFQTNLAIDVFLIHISEVV
>NZ_CP022514.1|WP_011183572.1|731709_732345_-|dTMP-kinase
MFITIEGMDGSGKTTALQRVKQYLEDLNYKVVMTREPGGLPLSEKIRELILNKDGVGMEPWTEALLFIAARKEHLEKVIKPYLKKGYIVISDRFMDSTTAYQGGARGLGVDYLNELQKNILEGFLPDLTLYFELSFEDAEKRLSARPEEKNRLDEEGRKFKEAVKLAFEELVVKEPNRITVIDASKSPEEVFEETKKVILEKIELWKKEKR
>NZ_CP022514.1|WP_097351657.1|732346_732937_-|recombination-protein-RecR
MNNELFEEIINNINKNNGLTKKTSERLVNNLIIDKFALDNFSNQLNFIKDNFSICPICNYYQIKNECLICSDETRNQNVICVVASQLDVNNIEKINKYKGLYHVLGSEINLNKKRSPSEINFESLLSRIEKNTELILALNATFEGELTTNYIYQLTKNMNINITRIAKGIPMGGSLDYMDETTLESAFKNRKKYEV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022514_2	2.4\|721748\|27\|NZ_CP022514\|CRT	721748-721774	27	NZ_CP022514.1	412784-412810	2	0.926

1. spacer 2.4|721748|27|NZ_CP022514|CRT matches to position: 412784-412810, mismatch: 2, identity: 0.926

aacttcctcaactttaacttcctcaac	CRISPR spacer
aacttcttcaactttaacttcttcaac	Protospacer
******.**************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022514_2	2.3\|721706\|24\|NZ_CP022514\|CRT	721706-721729	24	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	16601-16624	3	0.875
NZ_CP022514_2	2.4\|721748\|27\|NZ_CP022514\|CRT	721748-721774	27	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	107627-107653	4	0.852
NZ_CP022514_2	2.4\|721748\|27\|NZ_CP022514\|CRT	721748-721774	27	NZ_CP024340	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-5	5648-5674	5	0.815
NZ_CP022514_2	2.4\|721748\|27\|NZ_CP022514\|CRT	721748-721774	27	NC_019515	Bacillus phage BCD7, complete genome	67801-67827	5	0.815
NZ_CP022514_2	2.4\|721748\|27\|NZ_CP022514\|CRT	721748-721774	27	NZ_CP024336	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp41, complete sequence	35515-35541	5	0.815
NZ_CP022514_1	1.1\|380384\|35\|NZ_CP022514\|CRISPRCasFinder	380384-380418	35	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	433854-433888	10	0.714

1. spacer 2.3|721706|24|NZ_CP022514|CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 3, identity: 0.875

agctgtagtttttttagcagctgg	CRISPR spacer
agttgtagtttttttagcggctgc	Protospacer
**.***************.****

2. spacer 2.4|721748|27|NZ_CP022514|CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 4, identity: 0.852

aacttcctcaactttaacttcctcaac	CRISPR spacer
aacttccttaactttaacttccttagt	Protospacer
********.**************.*..

3. spacer 2.4|721748|27|NZ_CP022514|CRT matches to NZ_CP024340 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-5) position: , mismatch: 5, identity: 0.815

aacttcctcaactttaacttcctcaac	CRISPR spacer
aacttcttcaactttatcttcctctct	Protospacer
******.********* *******  .

4. spacer 2.4|721748|27|NZ_CP022514|CRT matches to NC_019515 (Bacillus phage BCD7, complete genome) position: , mismatch: 5, identity: 0.815

aacttcctcaactttaacttcctcaac	CRISPR spacer
aacttcctccgctttaacttcctcttt	Protospacer
********* .*************  .

5. spacer 2.4|721748|27|NZ_CP022514|CRT matches to NZ_CP024336 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp41, complete sequence) position: , mismatch: 5, identity: 0.815

aacttcctcaactttaacttcctcaac	CRISPR spacer
aacttcttcaactttatcttcctctct	Protospacer
******.********* *******  .

6. spacer 1.1|380384|35|NZ_CP022514|CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.714

tgttgaatcagtttcagtttcttctaatgtttcat	CRISPR spacer
ttctgaatcagtttcggtttcttttaattcctgca	Protospacer
* .************.*******.**** ..*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage