CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP049774	Mesoflavibacter sp. HG37 chromosome, complete genome	2 crisprs	DEDDh,cas3,PrimPol	0	1	1	0

1. NZ_CP049774

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP049774_1

• CRISPR_ID: NZ_CP049774_1
• CRISPR_location: 1281910-1282101
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP049774_1

Consensus_repeat	Method
TCACCGTCAGTATCAGGACATCCGTTAAAC	CRISPRCasFinder

spacers of NZ_CP049774_1

>1.1|1281940|51|NZ_CP049774|CRISPRCasFinder
GATTTTAAACCAGCAACTTCAGGACAGTTATCGTTGTTATCTGCAACACCA
>1.2|1282021|51|NZ_CP049774|CRISPRCasFinder
TCAGCTAAACCAGCTTCGTTTGGACAAGTATCTTTAGCATCTTCTATTCCG

CRISPR arrays and Neighbor proteins around NZ_CP049774_1

CRISPR arrays

The CRISPR arrays of NZ_CP049774_1

>merge|NZ_CP049774|1|1281910-1282101|CRISPRCasFinder
TCACCATCAGCATCTGGACAACCAGCTAAAGATTTTAAACCAGCAACTTCAGGACAGTTATCGTTGTTATCTGCAACACCATCACCGTCAGTATCAGGACATCCGTTAAACTCAGCTAAACCAGCTTCGTTTGGACAAGTATCTTTAGCATCTTCTATTCCGTCACCATCAGTATCAGGACATCCGTTAAAC

>NZ_CP049774|1|1|1281910-1282101|CRISPRCasFinder
TCACCATCAGCATCTGGACAACCAGCTAAA	GATTTTAAACCAGCAACTTCAGGACAGTTATCGTTGTTATCTGCAACACCA
TCACCGTCAGTATCAGGACATCCGTTAAAC	TCAGCTAAACCAGCTTCGTTTGGACAAGTATCTTTAGCATCTTCTATTCCG
TCACCATCAGTATCAGGACATCCGTTAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049774.1|WP_106688160.1|1287477_1288086_+|superoxide-dismutase	unknown	unknown	gnl|CDD|223678
NZ_CP049774.1|WP_106688150.1|1270575_1270911_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP049774.1|WP_106688155.1|1277724_1278567_-|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl|CDD|223669
NZ_CP049774.1|WP_106688151.1|1272215_1272857_+|2OG-Fe(II)-oxygenase	unknown	unknown	gnl|CDD|379309
NZ_CP049774.1|WP_106688163.1|1291344_1291986_-|ribonuclease-H	unknown	unknown	gnl|CDD|260015
NZ_CP049774.1|WP_027879414.1|1292727_1292961_+|acyl-carrier-protein	unknown	unknown	gnl|CDD|179197
NZ_CP049774.1|WP_106688149.1|1269913_1270561_+|peptidoglycan-binding-protein	unknown	unknown	gnl|CDD|366659
NZ_CP049774.1|WP_106688165.1|1294235_1294982_+|ribonuclease-III	unknown	unknown	gnl|CDD|274024
NZ_CP049774.1|WP_106688164.1|1292972_1294223_+|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl|CDD|274452
NZ_CP049774.1|WP_106688154.1|1275367_1277728_+|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl|CDD|274362
NZ_CP049774.1|WP_106688161.1|1288348_1290247_-|amidophosphoribosyltransferase	unknown	unknown	gnl|CDD|215241
NZ_CP049774.1|WP_106688183.1|1270900_1271662_-|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl|CDD|277343
NZ_CP049774.1|WP_106688159.1|1284196_1287343_-|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|237554
NZ_CP049774.1|WP_106688152.1|1272958_1274293_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP049774.1|WP_106680905.1|1271672_1272125_-|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl|CDD|376501
NZ_CP049774.1|WP_106688158.1|1282936_1284130_-|glycine-C-acetyltransferase	unknown	unknown	gnl|CDD|235893
NZ_CP049774.1|WP_106688156.1|1278556_1281310_-|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl|CDD|378929
NZ_CP049774.1|WP_106688184.1|1291978_1292545_-|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl|CDD|187714
NZ_CP049774.1|WP_106688153.1|1274391_1275189_+|universal-stress-protein	unknown	unknown	gnl|CDD|238182
NZ_CP049774.1|WP_106688162.1|1290351_1291275_-|sugar-kinase	unknown	unknown	gnl|CDD|238921

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP049774.1|WP_106688160.1|1287477_1288086_+|superoxide-dismutase	gnl|CDD|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.59863e-110
NZ_CP049774.1|WP_106688155.1|1277724_1278567_-|alpha/beta-hydrolase-fold-domain-containing-protein	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.2026e-09
NZ_CP049774.1|WP_106688151.1|1272215_1272857_+|2OG-Fe(II)-oxygenase	gnl|CDD|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.93141e-25
NZ_CP049774.1|WP_106688163.1|1291344_1291986_-|ribonuclease-H	gnl|CDD|260015	cd13935, RNase_H_bacteria_like, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. This family includes bacterial ribonuclease H (RNase H) enzymes. RNases are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site residues and have the same catalytic mechanism and functions in cells. RNase H is involved in DNA replication, repair and transcription. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.	2.70202e-67
NZ_CP049774.1|WP_027879414.1|1292727_1292961_+|acyl-carrier-protein	gnl|CDD|179197	PRK00982, acpP, acyl carrier protein; Provisional.	3.39668e-33
NZ_CP049774.1|WP_106688149.1|1269913_1270561_+|peptidoglycan-binding-protein	gnl|CDD|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	4.0484e-08
NZ_CP049774.1|WP_106688165.1|1294235_1294982_+|ribonuclease-III	gnl|CDD|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	6.98173e-58
NZ_CP049774.1|WP_106688164.1|1292972_1294223_+|beta-ketoacyl-ACP-synthase-II	gnl|CDD|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP049774.1|WP_106688154.1|1275367_1277728_+|hybrid-sensor-histidine-kinase/response-regulator	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	6.02329e-68
NZ_CP049774.1|WP_106688161.1|1288348_1290247_-|amidophosphoribosyltransferase	gnl|CDD|215241	PLN02440, PLN02440, amidophosphoribosyltransferase.	4.05175e-33
NZ_CP049774.1|WP_106688183.1|1270900_1271662_-|UDP-2,3-diacylglucosamine-diphosphatase	gnl|CDD|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.16332e-53
NZ_CP049774.1|WP_106688159.1|1284196_1287343_-|UvrD-helicase-domain-containing-protein	gnl|CDD|237554	PRK13909, PRK13909, RecB-like helicase.	1.08983e-81
NZ_CP049774.1|WP_106688152.1|1272958_1274293_-|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.8414e-94
NZ_CP049774.1|WP_106680905.1|1271672_1272125_-|6-carboxytetrahydropterin-synthase	gnl|CDD|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	4.36882e-33
NZ_CP049774.1|WP_106688158.1|1282936_1284130_-|glycine-C-acetyltransferase	gnl|CDD|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP049774.1|WP_106688156.1|1278556_1281310_-|PD-(D/E)XK-nuclease-family-protein	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.1504e-19
NZ_CP049774.1|WP_106688184.1|1291978_1292545_-|phosphoribosylglycinamide-formyltransferase	gnl|CDD|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	1.81686e-82
NZ_CP049774.1|WP_106688153.1|1274391_1275189_+|universal-stress-protein	gnl|CDD|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	9.46684e-12
NZ_CP049774.1|WP_106688162.1|1290351_1291275_-|sugar-kinase	gnl|CDD|238921	cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	5.98976e-150

Protein sequences

>NZ_CP049774.1|WP_106688156.1|1278556_1281310_-|PD-(D/E)XK-nuclease-family-protein
MTSFIYQVLNDLKSKGFNLSDVSFVLPSRRAGVFLKKELSTLVQKNIFSPEIISIESFVEELADLKSISNTELLFEFYTVYTKITPLTEQEPFESFTKWAQLIIQDFNEIDRYLIPQKNIFEYLSAIKDLDHWSLEANQTPLISNYLKFWNKLYVYYQKFTSHLKLKNSGYQGLIYREAVNNLENYIQNTKKTHVFLGFNALNTCEETIIQELLQNELGYTYWDIDKSFVDRKYHDAGLFIRQHLKTWKYFKNNKLNWLENLYETKKNITVFGVPKNVGQAKTVGTILKELSKDQIKNTAVILGDENLLLPVLNSIPKKIEAINITMGFPLKSIPLASLFEQLFSLQINNQSKYYYKDIIAIINHQYTALLFDPSNVKKITNTINTNNLIYLTKEELIETIENDKNIISLLFTDWNNNVDNAIESCFKLISVIKDKLVEDRKANQLGLEYLYRFNALFNEISSLNQKFKSLNSISGLYSVYKELLSSETLDFQGEPLQGLQVMGMLESRVIDFETVIITNVNEGVLPSGKSNNSFIPFDVKIEKNLPTYKEKDAVYTYHFYHLLQRAKNIYILYNTETDALIGGEKSRFINQLELEGIHDINHKIIAPKINVKPEKLLTVPKTKSLIEAIKNVALKGFSPSSLTNYVRNPIDFYNQKILGINTLDEVEENVAANTLGTVVHNTLEALYIPLKGHILTQEHIKGLFPKIDEYINKFFKEEYKEGLINQGKNLIVYEVAKRYITNFLNFELEQIKKGNKIQIIDLEKKIENVYINIDQLDFPIKLNGTVDRIDVCNGKTRIIDYKTGKVEQKDVTVVNWEDLTTDYKKYSKSFQVLMYAYMLNKKTELNFPVEAGIISFKNLKSGFIKFAKKEKSGTNNKDFDITEDTLTEFEIELKKLIIEICNPEIPFTEKEIKNDY
>NZ_CP049774.1|WP_106688155.1|1277724_1278567_-|alpha/beta-hydrolase-fold-domain-containing-protein
MIIKNQVLNRNNNKPIVWDAFYNSNAIKKPLVIFCHGYKGFKDWGTWNLMAQSFKDEHLFFVKFNFSHNGGTVKQPIDFPDLDAFAENNYTKELQDLDDLITYLISNKNDYLNEIDTNNITVIGHSRGGGISIIKAKEDSRIKKLITWASVSSFGKRTSTTGDLEQWKKDGVKYVINGRTKQKMPHNYQFYLDFKANEQRLNIENAERNIKIPHLIIHATEDPSVSFDEALNLNQWNKNSVLLEIPDANHVFNSKHPWDNAIMPLALQTVVSNSIKFILD
>NZ_CP049774.1|WP_106688154.1|1275367_1277728_+|hybrid-sensor-histidine-kinase/response-regulator
MHKTTLWLLLFCNVIWAQTTEVFNPLLTNKKLYEVAKIINVEDKLLSLEEVKAIDTSRFKPLTSDNLNLGFTTSNYWVNFNLENTTNNPIVYYLETARPITNEANLYKLTDSETLLLKSGDQIPFNQRQVQHRNTVFKFELQPNVISSFYLHLSSDGETINVPLNLYTEAQFWQVNYSQQLFLGLFYGILFLAGIVYLFFYSSLSEKTFLYYSSYVLSIAFLQGALDGFIFQYIFPEAGFFNYKAVLITALFSNFFLLKYCEYFLDIKNISKSIYKFYKGIYFVLAALFLLTLLSAKTMEWVYPISNVNGLISLLLILTTLVILKQKNVKIDTFFFVGIFFLVIGLLGFVMNNLGILPNNFYTLNSAKFGSGLEVIFLSLSMTNLIRKLRLEKESSQQLVLNRTKEISELKSYFMSNMSHELRTPINAILGVVQTEIDTNTNATDQYQIIKNASLSLLSNVNDILDFEKIESNQLRLSIKEFNPKSLITQISNNWQAEAEKKGLNYVFEIDEEIPEIVEGDSERFVQIINNVLSNAVKFTLSGSVVFKLKCSSQPNNYSRFSIQVADTGVGMTDSVKQNVFDSFNQMRNNHKRQFGGIGLGLTIVKHLVNLHQGNIKIESQLNTGTEVYIDIPLKIISTSIHNSLDNTLSLDRKTPIKVLVVEDNLINQMVIKRLLDTQKGIEYTIVNNGKLAIEILNLKPFDVILMDLQMPVMDGYEATVHIRSGKVKSFNKNIPIIAVTADAMPNTKDKVLELGMNDFITKPIEKNQLIKAILLLSAKHNLKIA
>NZ_CP049774.1|WP_106688153.1|1274391_1275189_+|universal-stress-protein
MKSILVPVGSSKNAQSHLQYAVDFAQAFGAKLYVVQIYNVYTKSGTMIKVDHILERESLDFLNRHISTVDTKDVEVIVKTFKGKLINTLELVCKTLDVDLILLEPRTNSIKDEVYLGKTSGKIIKQTNIPALIIPEGFKYKPINSILMALKSATIKKEGVLDPLKAIKTQYKSALNLLLVKTPFYNEGDFDVAEELKLLVDSTSTSENATTFQGVLENYKDNNPDMLCVVRRKRGFFTKLWEKNSILKKDFHASTLPVLVLSGLK
>NZ_CP049774.1|WP_106688152.1|1272958_1274293_-|MATE-family-efflux-transporter
MTTDISLNKINKLAIPALIAGISEPILSLTDAAVIGNVNLNPTESLAAIGIVTTFISMLIWVLGQTRSAISSIISQHLGANTLDKVRQLPAQAIFLITALSIFIIVITYPFASNIFKLYNAENIILDYSVEYYRIRVIGFPFTLFVIAVFGTFRGLQNTFYPMVIAIIGAALNVILDFLLVYGIDGVFEGLHIKGAAYASVIAQLIMAVIAGFLLLTKTSIPLRFTLPFNPQIKNFTLMILNLFVRTLALNITLYFATKYATGYGKNYIAAYTIAINLWFLGAFIIDGYASAGNILSGKLLGEKNYNTLINLSNKLIKYGILLGVFVAIIASLFYYQIGTIFTKEQAVLEKFYSVFWIVLAMQPLCALAFIFDGMYKGLGKMKVLRNVLLLSTFLVFIPILWITDHYNLKLHGIFIAFTLWIIARGIPLIIIFRKQFLPLTQNN
>NZ_CP049774.1|WP_106688151.1|1272215_1272857_+|2OG-Fe(II)-oxygenase
MSQLFEAIDFVEVPLYERIIGDIAHQKYCVIDHFFDDTEVDILRTSLLEKYQEDAFKKAAIGNKFDEVIAKSIRGDVILWMDEARANPSESLFFNKINHLVNYLNKTCFMGILHKEFHYAIYPKGTFYKRHLDTFKNDDRRKLSFVCYLNHEDWQPENGGELVLYLDENNPENDKIIYPLPGRVVIFESQIIEHEVKPVNTKRLSITGWLKTR
>NZ_CP049774.1|WP_106680905.1|1271672_1272125_-|6-carboxytetrahydropterin-synthase
MSNIRITKQFSFETGHALYGYDGKCKNVHGHSYKLDVTVIGQPITDTKNVKFGMVIDFGDLKKIVKEEIVDVFDHATVFNKNTPHVELAKELQDRGHDVLLVDYQPTSEMMVIDFAKKIKDRLPNTIKLHSLKLSETATSYAQWYASDNE
>NZ_CP049774.1|WP_106688183.1|1270900_1271662_-|UDP-2,3-diacylglucosamine-diphosphatase
MHVPNGKKIYFASDNHLGAPTKAASLPREKKFVAWLDEVKQDAAAIFLLGDLFDFWMEYRNVVPKGFTRTLGKLAEITDSGIPIYFFVGNHDLWMNGYFEEELNIPVYHKPQEFTFNNTSFFIGHGDGLGPGDKGYKRMKKLFTNPISKWMFQRLLHPDFAMRLGNYLSVKNKLISGDDDAKFLGEDNEWLVQYCKRKLEDKHRDYFVFGHRHLPLNIDLTQNSKYINLGDWIQYYTYGVFDGKKMELKTFKS
>NZ_CP049774.1|WP_106688150.1|1270575_1270911_+|hypothetical-protein
MKTEDNIENHYKLMISFKDKILFESELDKKEINYYVENEYFGDKVRFVFLDSDHKKVDNIIINNEIVATVESNLVSDFNDQSKMVKLYLIIAFVFIAIIFLLALFFNFIMT
>NZ_CP049774.1|WP_106688149.1|1269913_1270561_+|peptidoglycan-binding-protein
MKKLIIALIVIIVLIFAYNQYKEYQRFHPDNFNYKSSEKIDLEYYNQDVVYGYFEAVQALNGFTNMQWNVNEINVKSPEDDDESTTFLVNEYRKKLAKVKYYEAKLEASKQLKEEGLTNDLIKLKLEGNNTKPDSNAIFKSKIKSMYAANPKVRLGEKSAFIYEVQKLLVKKGFDLELDGVYHTITRNAIIEFEKKRNLFPDGNLDVLTLDALLD
>NZ_CP049774.1|WP_106688158.1|1282936_1284130_-|glycine-C-acetyltransferase
MYNKIKDFLQAEIEEIKDNGLFKEERIITSAQGAEITLNTGETVLNFCANNYLGLSSHPEVIQAAKDTMDTHGFGMSSVRFICGTQDIHKTLEAKVAEFYGTEDTILYAAAFDANGGVFEPLLGKEDAIISDSLNHASIIDGVRLCKAARYRYQNNDMEDLEKQLIAANQAGARFKIIVTDGVFSMDGLVAPLDKICDLADKYDALVMIDECHAAGFIGKTGRGTLEEKNVMGRVDIITGTLGKALGGAMGGYTTGKKEIIEVLRQRSRPYLFSNSLAPAIVGASIKVFDLLANDNSLRDTLEENTNFFKSGLKNAGFDIVDGDSAIVPVMLYDAKLSQQMANMLLEEGIYVIGFFYPVVPKDKARIRVQLSAAHTKAHLQKAIDAFIKVGKKLEII
>NZ_CP049774.1|WP_106688159.1|1284196_1287343_-|UvrD-helicase-domain-containing-protein
MNTFSPFKVYNASAGSGKTFNLVKSYLKLLFKNENIFAFKHILAMTFTNKAVGEMKDRLLKTLDEFSKTNVLDGKNDMFNLICAELDLSPIQVHTKSKNLLNTIMHNYAAFDITTIDGFNHKLIRTFAYDLDLPVNFEVDLDTDSLLQKAVDNLISKAGTDSTFTKILVAFALEKADDDKSWDITSDLFEMSKKLINENDIPHLNEAFKDKTLEDFEVLKTKLIKQIKVYEEQIINNAKRILKTFETNQLTKDDFYRGTLFNHFDKAYRLDTYGLYNNQLEKNIEENKVYNKNLDPNKKDIIDQLLSEIGLTYKTIKATVYNLTFLKAIYKNIIPLSVLNAIKTELQSIKDEENKLLISEFNTLISEEIKNQPTPFIYERIGEKFRHYFIDEFQDTSLMQWNNLIPLMENALTGQNLKGEIGTAMIVGDAKQAIYRWRGGKAEQFIELTKQTNPFPVNKDVIQLEYNYRSCKNIVDFNNSFFNYTATTSFRDQNYAELYKDASQKHKISTDGYVNLTFLDYTDNDDKVNQYNAKTLEIINNCIANGFSLKDICILTRKRKDGVSISKYLAENNVAIISSETMLINNSEEVKLITNVLRILENPNNLEVKANILHYIANTYDIANKHDFISNALSLNEEVFFKTFNQFEIFFDANSITQLSLYDTVESIARQFKLIDESDAYIQFYLDLVLDYSQKNITDISGFLTYYDNKKDKLSIVSPENQEAVQIMTIHKSKGLEFPVVIFPYADLDIYRDKKSQIWFPLEQKDFNGFSKTLINVNKDLEMFGDQGAVIYNQFKSQQELDQINLLYVALTRPEEQLYIISKNETKITEPNSFSKLFIAYLQEQNIWEDNKYCYEFGNPKRELNPELKKDNTITNKQFISVDKKDHNIKIITKSGYLWDTNQEDAIEKGNIIHDIMANVKTKEDIPFAVNQAIKDGIINNQQATIITSNINQIVNHSKLTAYYTDQYLIYNEKDIILSNGQLIRPDRLAIKDNEAIIIDYKTGAVNNKYEQQLQLYTTQLEMMGYKVSKKILVYINENIDVIEFNNI
>NZ_CP049774.1|WP_106688160.1|1287477_1288086_+|superoxide-dismutase
MAFELPELGYAYDALEPHIDARTMEIHHSKHHNGYTTKLNAAIEGTDLEGKSIEDILTNLDMSNSAVRNNGGGFYNHSLFWTVMNPEGKGRLSGELKDAIEAEFGSFDNFKDAFSKAAATQFGSGWAWLCVHKGGKVEVCSTPNQDNPLMPGVTCEGTPILGLDVWEHAYYLNYQNRRPDYIEAFFSVINWNEVERRYAEAK
>NZ_CP049774.1|WP_106688161.1|1288348_1290247_-|amidophosphoribosyltransferase
MSDALKHECGIAHIRLLKPLEYYKEKYGSAFYGVNKMYLMMEKQHNRGQDGAGFASIKLDTKPGERYISRVRSIQQQPIQDIFGQINNRINQVLTEHPEYQDDVALQKKHVPYIGEVLLGHVRYGTFGKNSVESVHPFLRQNNWMHRNLILAGNFNMTNVKELFNNLVALGQHPKEYTDTITIMEKIGHFLDDAVSKIYKDLKKEGYSKHECSPLIAERLKVHKILKRAAKNWDGGYAMAGLLGHGDSFVLRDPAGIRPAFYYKDDEVVVVASERPVIQTVFNVEFDDVKELEPGHAIITKKSGDVSIKQILEPLERKSCSFERIYFSRGSDAEIYQERKTLGKLLMPQVLKAIDNDTKNTVFSYIPNTAETSFYGMIDTVEEHLNERKTQDILDGNGNLSKEQVISILEETPRIEKIAIKDVKLRTFITEDSSRDDLVAHVYDVTYGVIKPTDNLVIIDDSIVRGTTLKKSIIKMMDRLHPKKIIVVSSAPQIRYPDCYGIDMANLESLVAFNAALELLKDNNKYDLVEEVYKKCKSQVDLADKDVKNYVKEIYDQFTPEQISDKISELLTDKSVNAKVEIIFQSVENLHKACPKHLGDWYFTGNYPTNGGNRVVNRAFINFYEGNKERAY
>NZ_CP049774.1|WP_106688162.1|1290351_1291275_-|sugar-kinase
MGKLVIVGTVAFDAIETPFGKTDKILGGAATYIGLSAANFNVDTAAVSVVGGDFPQEYLDLLKDRDINIEGVEIVKDGKTFFWSGKYHNDMNSRDTLATELNVLADFNPIVPDNYKDSDVVMLGNLHPIVQIGVLDQMTKKPKLVVLDTMNFWMDTALDQLHEVIKRVDVITINDEEARQLTEEYSLVVAARKIHEMGPKYVVIKKGEHGALLFHNDNVFYAPALPLEEVFDPTGAGDTFAGGFAGYLASTGDVSFENMKNAVIYGSTLASFCVEKFGTERMLTLTEDEVNKRLQQFKNLTQFEIEL
>NZ_CP049774.1|WP_106688163.1|1291344_1291986_-|ribonuclease-H
MGKKKKKYYTVWKGHNTGVFETWDDCKAQIKDFEGAQYKSFTTFDAAKKALKGNYFDYVGKNKTFKSDLTEEQLKKIGQPNYNSISVDAASSGNPGKMEYRGVDTKTKKQLFIQGPFEEGTNNIGEFLAIVHGLAFLKQHNSNRIIYTDSKTAISWVKKKNCNSKLKRNDKNKPVFDLVDRAIKWLNENTYTTTILKWETKAWGEIPADFGRK
>NZ_CP049774.1|WP_106688184.1|1291978_1292545_-|phosphoribosylglycinamide-formyltransferase
MKRVVIFASGSGSNAENLIKFFHNSDNASVVQVLTNNPHAKVLDRCKKLNVSALSFNRIAFTKTEDVLNILKSSNPDLIILAGFLWKFPENILNQFPNKVINIHPALLPKYGGKGMYGMNVHEAVVKNKETETGITIHYVNENYDEGAIIFQAKCDVLPNDSAQDVASKIHELEMEYFPKVVDQLLNG
>NZ_CP049774.1|WP_027879414.1|1292727_1292961_+|acyl-carrier-protein
MSDIASRVKAIIVDKLGVDENEVVNEASFTNDLGADSLDTVELIMEFEKEFDIQIPDDQAENIATVGQAVSYIEAAK
>NZ_CP049774.1|WP_106688164.1|1292972_1294223_+|beta-ketoacyl-ACP-synthase-II
MELKRVVVTGLGALTPIGNTKDEYWNGLVNGKSGAAPITYFDTEKFKTNFACELKNFVATDFLDRKEARKMDRFTQYAMVASDEAIADSNLDLDKVNKLRVGVVWGAGIGGLETFQNEVLNYANGDGTPRFNPFFIPKMIADIAPGNISIKNGFMGPNYTTVSACASSANALIDALNYIRLGHCDVIVTGGSEAAVTIAGMGGFNAMHALSTRNESPESASRPFDATRDGFVLGEGAGALILEEYEHAKARGAKIYAEVLGGGLSSDAHHMTAPHPDGIGVIAVMKNCLENAGLKPEDVDHINTHGTSTPLGDVAELKAIKAVFGDHAKNININSTKSMTGHLLGAAGAIEAIASILAMENGIVPPTINHTTVDENIDPELNLTLNTPQKRDIKVAMSNTFGFGGHNACVLFKKLD
>NZ_CP049774.1|WP_106688165.1|1294235_1294982_+|ribonuclease-III
MRSLKNIFNSRSKDKGEFFTALTKILNFKPKTLKHYKTAFTHRSMNIKNSKGHIVNYERLEFLGDAMLSAVIAHYLYTEVPSGDEGYLTKMRSKVVSREHLNELGKDLGLIKLVKSKIPKGQFGDNIHGNLFEALVGAIYLDKGYAACEKFIENRIIGPYIDIEKLEGKVISYKSLLIEWCQKEKKHFDYNVYEDTGNSDVKHFSVKLSLDHKVVAKARATSKKKAEEKASKRAYFAFQKEISKATIL

Crispr_ID: NZ_CP049774_2

• CRISPR_ID: NZ_CP049774_2
• CRISPR_location: 2565337-2565707
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 6 spacers

Consensus repeat of NZ_CP049774_2

Consensus_repeat	Method
AAATCTCCAGATCCTGTAACTGT	CRISPRCasFinder

spacers of NZ_CP049774_2

>2.1|2565360|34|NZ_CP049774|CRISPRCasFinder
TTTATTTACTTTTTCTGGATGTCCTTTGTATTCA
>2.2|2565417|31|NZ_CP049774|CRISPRCasFinder
TGCATCTAATTCTTTTTTTGCAATTACTTCT
>2.3|2565471|37|NZ_CP049774|CRISPRCasFinder
AGCTTTAGTATGATTTGCCTCTAATCTAGCTCCGTGA
>2.4|2565531|34|NZ_CP049774|CRISPRCasFinder
AACATCTAATAGATTTGTTACACCTGTTAAAGTT
>2.5|2565588|34|NZ_CP049774|CRISPRCasFinder
TGCTTCTATATCGCTTGCTTCTACATCTAAAGTA
>2.6|2565645|40|NZ_CP049774|CRISPRCasFinder
AGACTTAAAATTTCTAGATTTTATAGTTGTATTTGTAGTT

CRISPR arrays and Neighbor proteins around NZ_CP049774_2

CRISPR arrays

The CRISPR arrays of NZ_CP049774_2

>merge|NZ_CP049774|2|2565337-2565707|CRISPRCasFinder
ATATCTCCAGAACCAGTTACTTTTTTATTTACTTTTTCTGGATGTCCTTTGTATTCAATATCACCAGATCCAGTAACTTTTGCATCTAATTCTTTTTTTGCAATTACTTCTATGTCACCAGATCCTGTAACTTTAGCTTTAGTATGATTTGCCTCTAATCTAGCTCCGTGAAAATCTCCAGATCCTGTAACTGTAACATCTAATAGATTTGTTACACCTGTTAAAGTTAAATCTCCAGATCCTGTAACTGTTGCTTCTATATCGCTTGCTTCTACATCTAAAGTAATATCACCAGATCCTGATATTTTAGACTTAAAATTTCTAGATTTTATAGTTGTATTTGTAGTTACATCTCCAGATCCGGATAAACT

>NZ_CP049774|2|2|2565337-2565707|CRISPRCasFinder
ATATCTCCAGAACCAGTTACTTT	TTTATTTACTTTTTCTGGATGTCCTTTGTATTCA
ATATCACCAGATCCAGTAACTTT	TGCATCTAATTCTTTTTTTGCAATTACTTCT
ATGTCACCAGATCCTGTAACTTT	AGCTTTAGTATGATTTGCCTCTAATCTAGCTCCGTGA
AAATCTCCAGATCCTGTAACTGT	AACATCTAATAGATTTGTTACACCTGTTAAAGTT
AAATCTCCAGATCCTGTAACTGT	TGCTTCTATATCGCTTGCTTCTACATCTAAAGTA
ATATCACCAGATCCTGATATTTT	AGACTTAAAATTTCTAGATTTTATAGTTGTATTTGTAGTT
ACATCTCCAGATCCGGATAAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP049774.1|WP_106688558.1|2570992_2571484_+|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|182727
NZ_CP049774.1|WP_106688552.1|2564692_2565262_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP049774.1|WP_106688560.1|2572366_2573386_+|type-IX-secretion-system-protein-PorQ	unknown	unknown	unknown
NZ_CP049774.1|WP_106688563.1|2574942_2576775_+|30S-ribosomal-protein-S1	unknown	unknown	gnl|CDD|235775
NZ_CP049774.1|WP_106688548.1|2557846_2559754_+|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl|CDD|235445
NZ_CP049774.1|WP_106688545.1|2554559_2555039_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_CP049774.1|WP_106688544.1|2553279_2554563_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224172
NZ_CP049774.1|WP_106688561.1|2573443_2574133_+|(d)CMP-kinase	unknown	unknown	gnl|CDD|234579
NZ_CP049774.1|WP_106688554.1|2566085_2567171_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP049774.1|WP_106688559.1|2571532_2572309_+|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|366664
NZ_CP049774.1|WP_106688550.1|2562392_2563223_+|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|320690
NZ_CP049774.1|WP_106688562.1|2574177_2574561_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|236880
NZ_CP049774.1|WP_106688547.1|2556584_2557847_+|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl|CDD|179486
NZ_CP049774.1|WP_106688546.1|2555170_2556577_+|glycogen-synthase	unknown	unknown	gnl|CDD|234809
NZ_CP049774.1|WP_106688555.1|2567154_2567700_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP049774.1|WP_106688551.1|2563312_2564659_+|MFS-transporter	unknown	unknown	gnl|CDD|341035
NZ_CP049774.1|WP_106688556.1|2567705_2568221_-|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|274357
NZ_CP049774.1|WP_106688557.1|2568531_2570979_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NZ_CP049774.1|WP_106688543.1|2551783_2553160_-|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NZ_CP049774.1|WP_106688549.1|2559857_2562263_+|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl|CDD|376446

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP049774.1|WP_106688558.1|2570992_2571484_+|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	2.8714e-12
NZ_CP049774.1|WP_106688546.1|2555170_2556577_+|glycogen-synthase	gnl|CDD|234809	PRK00654, glgA, glycogen synthase GlgA.	1.04924e-168
NZ_CP049774.1|WP_106688563.1|2574942_2576775_+|30S-ribosomal-protein-S1	gnl|CDD|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP049774.1|WP_106688548.1|2557846_2559754_+|1,4-alpha-glucan-branching-protein-GlgB	gnl|CDD|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP049774.1|WP_106688545.1|2554559_2555039_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	1.8483e-74
NZ_CP049774.1|WP_106688544.1|2553279_2554563_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.47331e-134
NZ_CP049774.1|WP_106688561.1|2573443_2574133_+|(d)CMP-kinase	gnl|CDD|234579	PRK00023, cmk, (d)CMP kinase.	3.42311e-122
NZ_CP049774.1|WP_106688557.1|2568531_2570979_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP049774.1|WP_106688559.1|2571532_2572309_+|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	5.44108e-11
NZ_CP049774.1|WP_106688550.1|2562392_2563223_+|M48-family-metallopeptidase	gnl|CDD|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	1.8887e-83
NZ_CP049774.1|WP_106688562.1|2574177_2574561_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	1.37104e-25
NZ_CP049774.1|WP_106688547.1|2556584_2557847_+|glucose-1-phosphate-adenylyltransferase	gnl|CDD|179486	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP049774.1|WP_106688551.1|2563312_2564659_+|MFS-transporter	gnl|CDD|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.91695e-93
NZ_CP049774.1|WP_106688556.1|2567705_2568221_-|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	4.66465e-33
NZ_CP049774.1|WP_106688543.1|2551783_2553160_-|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP049774.1|WP_106688549.1|2559857_2562263_+|glycoside-hydrolase-family-31-protein	gnl|CDD|376446	pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31. Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases.	0

Protein sequences

>NZ_CP049774.1|WP_106688552.1|2564692_2565262_+|hypothetical-protein
MKLSTLTFLALFILLTAFTCENEPLEGDFVVEESNDGNTNNPNNVALEGTWLLTAWNSDNPVDINNDGTASTNLLAEFNCYNNETLVFTSNGMGSANSTSYADFSFEIEVGTTDSYIYSVDCIQETEISPFTWIQSGNNVAISVTGGVTTNWTLTNNQLSILIPEGFMAFSEDFTTTVTEDLTFVYTKQ
>NZ_CP049774.1|WP_106688551.1|2563312_2564659_+|MFS-transporter
MENLQKGSKKLLNAWAFYDWANSVYTLTIASSIFPIFYSALFINQTEKIVPAFGFDFKSTALITFITAFTFLVVAFTSPILSGIADYVGNKKNFLKFFCYVGGFGCIGLYFFSLENIYISLLFYFMGLIGYWGSLVFYNSYLPDIAYPEQQDSISAKGFSMGYIGSVTLLVINLVMVMYPNVFFIADEVLENGQIVQSASQVAMRYSFVMVGIWWIGFSQYSFYWLPKGTSTGQKVTKDVVLNGFKELKIVWRALKQNIVLKKYLQSFFVFSMAVQTIMLVAVYFGEEEINWGSDDAKTMGLIVSILIIQLIAILGAILTSRASSKFGNIKTLIAINFIWMSLCFYAYFMESPMQFYIAAASVGFVMGGIQSLARSTYSKFLPETKDTTSYFSFFDVAEKIGIVIGMLIYGTIDQVTGSMRNSILFLFIFFLIGIFLLFRVLKQQKLE
>NZ_CP049774.1|WP_106688550.1|2562392_2563223_+|M48-family-metallopeptidase
MKYKNPIIIAFTLLMFLSCSTNPFTGKKTLALIPNSQLFPTSFSQYNQVLSEGKVITGTQESEMIKRVGQRIAVAAERWLNANGKTGYLNDYKWEYNLIQEDVVNAWCMPGGKIAFYTGILPVAQNETAIAVIMGHEVAHALANHGQQRMSAGMLQQGLAVAGNIAIKDEKSRNAFNQYYGIGSQVGVMLPFSRSHETEADRIGLYLTAIAGYNPDEGAELWKRMAQASGGQAPPEILSTHPANQTRINNLTALSPQAKAEAKKFGVSAFRPIGNY
>NZ_CP049774.1|WP_106688549.1|2559857_2562263_+|glycoside-hydrolase-family-31-protein
MITNTELEQKGNLFPSKIINFSKDVDTLYFYTENDVVLQLTVLRDSVLRFRYTTTGNFENDFSYAITKYASTGYNHLEISENEKFYIVRTSKLICNISKENLKISIYDSLDGTLINEDELGFHWEESYHYGGNIVKMSKTINDKESYYGLGDKPEHLNLKGKRFENWVTDSYAFGKHTDPIYKAIPFYTGLHHNKSYGIFFDNSFRSYFDFGQERRHVTSFWAQGGEMNYYFIYGPKMNDVIESYTDLTGKPHQLPPLWALGFHQCKWSYYPESEVKEITSTFRKLQIPCDAIYLDIDYMDGFRCFTWNKEYFPDPKRMVAELAAEGFKTVAIIDPGIKIDKEYSVFKEALDNDYFCKRADGPYMKGKVWPGECYFPDFTKPEVRDWWSGLFKELIEDIGVKGVWNDMNEPAVMEVPNKTFPDDVRHDYDGNPCSHRKAHNIYGMQMARATYHGLKKFNYPKRPFVITRSAYSGTQRYTSTWTGDNVATWEHLNIANIQAQRMAMSGFSFVGSDIGGFAEQPQSELFTRWIQLGVFHPFCRVHSSGDHGNQEPWAFDEDVTNIVRKFIELRYQLLPYLYTAFWKLVEQGTPLLKSLVLFDQEDPQTHYRTDEFIYGNKILVCPVQEPNAKGRRMYIPRGKWYNFWTEEVVEGGKEKWVDAEIDSMPIFVKEGAIIPKYPIQQHVKEKQIDQVTLDVYYKEGKEQSELYDDAHDGYDYTKGRYSYRTFKLTGKSNELIIQQHKEGKYEAPYQTFKLNLHGLPFTINEIQIDNEKIELSHLKENGTTVMTVDKNFSEIHLIGH
>NZ_CP049774.1|WP_106688548.1|2557846_2559754_+|1,4-alpha-glucan-branching-protein-GlgB
MSQVQPHSLFTDLDIYLFKNGTHYKLYEKFGSHVITLNGVEGTYFAVWAPSAKQVSVVGDFNYWEDGLHTLNVRWDESGIWEGFIPNIKAGEKYKYKIHSTIDDQVTEKADPFAKQSELPPKTASIVSQSHYKWQDKPWMLKRKKANALDAPFSIYEVHLGSWRRHIEDNSYLSYSELAYQLVNYVKELNFTHVQFMPIMEYPYDPSWGYQITGYFSATSRFGSPEELKFLIDKFHENNIGVILDWVPSHFPEDKHGLGNFDGSHLYEHPDPKKGYHPDWKSLIFNYGRNEVKSFLISNALFWLDQFHVDGLRVDAVASMLYLDYSRNEGEWNPNQFGGRENLEAIQFIKELNQAIYKEFPDVQTIAEESTAFPGVSKPVFLGGLGFGMKWMMGWMHDTLQYFSKAPIYRKHHQNEITFSLTYAFTENFTLPLSHDEVVYGKKSLVSKMPGDDWQKFANLRLLYSYMYTHPGAKLLFQGGEFAQHDEWNYSKSLDWHLTQFNSHNGIQKLIADLNTLYKQEKALHELQFDAKGFEWIDYNDAENSVISYIRKGKSNKDSLIVICNMTPVPRLDYRLGVPKKGVLKQLFNSDDKIYDGTGNYSNLTIKTQSKSWHYKKESVQINLPPLAVLVFNYQ
>NZ_CP049774.1|WP_106688547.1|2556584_2557847_+|glucose-1-phosphate-adenylyltransferase
MNNKVLSIILGGGQGSRLYPLTDTRSKPAVPIAGKYRLVDIPISNCINSGIKRMYVLTQFNSASLNRHIKNTYHFSFFSSAFVDVLAAEQTPQNNTWFQGTADAVRQSMHHFLQHDFEYALILSGDQLYHMDYKKMVQQHIDNNSDITIGTVPVKEKEAPAFGILKTDNDNNITSFIEKPNASLLPEWTSPVSDEMKAEGRNHLGSMGIYVFNRQLLIDLMNDESTVDFGKEIIPQSIGKLKVSSYQFEGYWTDIGNIDSFFEANIGLTDDIPKFNLYDTEQRVYTRARILPTSKISGTQLNKAVIAEGCLIHAEKIEKSVIGVRSRIGKGSVITNTYMMGSDTYESLEEIEKNKIEILVGIGENCHINNAIIDKNCRVGDNVTINGGKHLEDTETSTYVIKDGIVVLKKGAIIPNGFSI
>NZ_CP049774.1|WP_106688546.1|2555170_2556577_+|glycogen-synthase
MKIIHVSAECYPIAKIGGLADVVGALPKYQQDKNTISEVIMPLYDNSFTNDNSFETIYNSQIIFGETTVNYSIVKLENSTLQFPVYCVNIPEYLYKTYVYSNDDVDRFLLFQIAALDWILTLQQKPNVIHCHDHHTGLIPFMLQECFKYKELNTIPVVTTIHNAQYQGWFGYDKLHLIPKFNLDNIGLLDWDNCINPLATAIKCAWRVTTVSPTYMEELKVEANGLQHLLNHESKKCVGILNGIDTTVWNPETDNFLNYNYNISNLEKGKAANKEALCKQFNLDYDKPLFAFIGRLVGEKGADVLPFALEKALENNDCSVIVLGSGFENIQNHLSFLKSKYEGRYNVFIGYDEALSHQIYASADFLLMPSRVEPCGLNQLYALRYGTIPIVRNVGGLKDTVKDISQLNGFGICHNHVSVDNIYNAMLRGINLFDKTTTFKSIRKLIMQKDHSWFVSAKAYKTLYKSIK
>NZ_CP049774.1|WP_106688545.1|2554559_2555039_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKLTLLFLITIVFSCKSKGQDKEKTKNYPVTKTEAQWKAELSDMEYYVLREAGTERVFSSPLNDEHREGTFLCAACNTPLFKSENKFDSGTGWPSFDQEIKGNVAFSTDYDLGYARTEEHCATCGGHLGHVFNDGPKNTTGKRHCINGVALNFKPSSN
>NZ_CP049774.1|WP_106688544.1|2553279_2554563_+|NAD(P)/FAD-dependent-oxidoreductase
MNIPKSCFPRVVIIGGGFAGIALAKKLSKKELQVVLLDKHNYHNFQPLLYQVSTGGLEPDSIAYPIRKVLKDFPNFYFRLANVSEINTEKNKVITDIGNLKFDYLVVASGSKTNFFGNASIEANSMEMKTIPQSLNLRSLILENFEEALLTSDLNERNALMNFVIVGAGPTGVELAGALAEIKKGILPKDYPDLDTRNVQINLIQSGDKILKAMSEQASHKAEDFLEKLGVQIWKNVRVTGYDGKVVTTNSDLTFETATVIWAAGVKGATIKGLDGEQFVSRSQRVLVNQFNQVNGFNHIFAIGDIAQMSTETLPHGHPMMAQPAIQQGKHLGDNLLRLIENKPLIPFKYKDKGSMATVGRNKAVVDLPKFKFQGVFAWFVWMFVHLFFLIGFRNRMVVFINWVYNYVRFDREARLIIRPFKKKLKS
>NZ_CP049774.1|WP_106688543.1|2551783_2553160_-|dihydrolipoyl-dehydrogenase
MSKYDIIVLGSGPGGYVTAIRASQLGFKTAVVEKENLGGVCLNWGCIPTKALIKSAQVFEYLKHAEDYGLKVKEAEADFDAVIKRSRGVAEGMSKGVQFLMKKNKIDVINGFGKLKPGKKVDVDGKEYSADHIIVATGARSRELPSLPQDGKKVIGYREAMTLKEQPKKMIVVGSGAIGVEFAYVYNSMGTEVTIVEYMDRIVPVEDADVSKQLEKSFKKNGINIMTSAEVTKVDTSGTGVKATVKTKKGEEVLEADIVLSAVGIKTNIENIGLEDVGIAVDRDKILVNDYYQTNIPGYYAIGDVTPGQALAHVASAEGILCVEKIAGQHVEKLDYGNIPGCTYCSPEVASVGLTEQQAKDKGIDIKVGKFPFSASGKASAGGNKDGFVKVIFDAKYGEWLGCHMIGAGVTDMIAEAVLGRKLETTGHEVLKAVHPHPTMSEAVMEAVADAYDEVIHL
>NZ_CP049774.1|WP_106688554.1|2566085_2567171_-|hypothetical-protein
MKLLYNLTLLLLFPVLITANNLTNWEGKHTKKKTINKSYDVSSNATLKIDNKYGNLDIVTWDQNKIVFEIIISTNGNDLEDVQEKLDDITVDFSANDTYVSAQTRIGTSKKSSWWNWNSKNNVNIKINYLVKMPKTNNVDLTNDYGSINLGTLEGNATINCDYGKITTKELLGTTNNLTFDYTNNSYFEYINKGRINADYSGYTVAKAKQLDIIADYTNSLIEIAENVNYNCDYGSLRVNNINNLKGNGDYLTVVVGDVYKNISIEADYGSIKIEKMTKNARNVFIDSDYVGIKIGIDSQYAFDFEIDLDYGGLSGDDDFEFNLRDVKSTSKHYKGYNLKSSSGNLIRINSDYGSVTFDNK
>NZ_CP049774.1|WP_106688555.1|2567154_2567700_-|hypothetical-protein
MSKDNLDQLFDRLNNQWDTQNPTIGHQDRFLNKLNNQQQVAKTTKSYLKPLLAVAATIVLIVTISFALKTEQPVYDLASVSPEMAETQHFFTSTIAFELNKLKNVQTEDTKAIIKDAMFRLEELEKEYEQLKISLNESGEDQLVIFAMITNFQNRIDILKTTLQYIEDQKELKQNNYETTI
>NZ_CP049774.1|WP_106688556.1|2567705_2568221_-|sigma-70-family-RNA-polymerase-sigma-factor
MLCITGNQKAQIELYNRYYHAMYNTSFRIVNNSFEAEDIMQDSFITAFSKLDTLKDKSTFGGWLKRIVINNSIHAFNKNKHLDVNLDHVMYKVEDHQGVDNQTDFTSIKAQQVLETLNHLKPNYKVVLTLNLIEGYDYEEIGDVLNISYANCRTMISRAKNSLRKKLEQLY
>NZ_CP049774.1|WP_106688557.1|2568531_2570979_+|endopeptidase-La
MKKSNFISLDSLSLQDFDENSELIPLMTPEDEEKINKEELPASLPILSLRNTVLFPGVVIPITAGRDKSIKLINDANKGGKVIGVVAQKDEDVEDPKAADINQVGTVARILKVLKMPDGNTTVIIQGKKRFKIDQVITEDPYIQATITEVAKATPAPKTEEFNAIIDSIKDLAVQIIKDSPNIPTEATFAIKNIESESFLINFVSSNMNLTVEEKQKLLEIDDLQDRALETLRYMNIELQKLELKNDIQSKVQSDLNQQQREYFLNQQLKTIQEELGGGNAEEIEEMKTRAKSKNWDEKVAKHFEKELSKMQRMNPQVAEYSIQRNYLDLFLDLPWNEFSEDKFDLKRAQKILDRDHYGLDDVKKRIIEHLAVLKLRNDMKSPIICLYGPPGVGKTSLGKSIAEALGREYVRISLGGLRDEAEIRGHRKTYIGAMPGRIIQSLKKAGTSNPVFVLDEIDKLSNSHQGDPSSALLEVLDPEQNSEFHDNFLEMGYDLSKVMFIATSNSLNTIQPALRDRMEIINVTGYTIEEKVEIAKRHLLPKQLKEHGLSDKDLKIGKAQLEKIVEGYTRESGVRGLEKQIAKMVRHAAKNIAMEEEYNIKVTNQDVIDVLGGPKLERDKYENNNVAGVVTGLAWTRVGGDILFIESILSKGKGAMTITGNLGKVMKESATIAMEYIKANAEILGIKSDVFNNYNVHIHVPEGATPKDGPSAGVTMLTSLVSLFTQKKVKKSIAMTGEITLRGKVLPVGGIKEKILAAKRARIKEILLCEDNRRDIEEIKPEYLKGLTFHYVTDMKDVIDIAITNTKVKNAKTL
>NZ_CP049774.1|WP_106688558.1|2570992_2571484_+|LysM-peptidoglycan-binding-domain-containing-protein
MKYFLLVAISMATFSVKGQNSDQINIILDGQPAVLNVKTGETKLLNGQTIKEGVVVSKGDSENIITIHAVLKGETLYSISKTYGISIAQLKAVNNLSNNIINVNQTLKIGYDSSREIKNYWKVKKGDTLYAIARQTGLSVDVIKRINNLQNNIIKIDQVLLLK
>NZ_CP049774.1|WP_106688559.1|2571532_2572309_+|LysM-peptidoglycan-binding-domain-containing-protein
MKRLILISFLLIFQFSFSQENEEFLPIVIEGQDAFLSTKTGEYVLLDHDNTNPKELKTTASGVVYNDIKIHEIKKGETLSKIAKQYNVDVNQLMEDNDLSSKKLDLNQKLKIIIKKLIPSSSPTISYSGDERIVARLQPGQSPSTLSPPPVNNKPNATTNKSAQNTLSKPILIPNTSENNETDEVKKAKLELLEAQKKLEEAKLKASKENQLPEYHTIKKNETFYSIAKQYNLTVQELKQLNKVDINNLKIGQKIKLR
>NZ_CP049774.1|WP_106688560.1|2572366_2573386_+|type-IX-secretion-system-protein-PorQ
MYKKIVPLVLFFFSTYCFSQLGGQSTYQFLNLVASPRQAALGGKVLTNVDYDVTQALYNPSTINVNMDNQFALNYSSYLGGINYGTAAYAYTWDRRTQTFHAGVTYINYGDFDGYDEQGNPTGSFTGNEAALSLGYALQIGYSDFYFGTNVKFISSSLEQYNSLGIATDLGLLYVDEDLEFQATLVVRNLGTQITTYAGRQESLPLEINIGLSQTLENIPLRWHLTFENLQEWPIGVSNPARATTDLEGNQTQENVGFLNNVMRHTIIGAELFPDKGFNIRLGYNFRRAEELRIVDQRNFSGLSAGFAVKLNKLRFSYTHAKYTAAANANFFGLHIDLQ
>NZ_CP049774.1|WP_106688561.1|2573443_2574133_+|(d)CMP-kinase
MQKITIAIDGFSSTGKSTVAKQLAKHLGYIYVDSGAMYRAVTLYTMQNGWIDKDHFDVIALVTNLDKITISFKFNDQLGFAEVYLNGENVEKQIRTLEVSSYVSKVAAIPEVRYQLVKQQHQMGKDKGVVMDGRDIGTVVFPNAELKLFMTASAETRAQRRYDELINRGDQVNYEDVLKNVRERDYIDSNRENSPLTKAEDAIEIDNSNLTLEQQFEKILSLVNKAIDK
>NZ_CP049774.1|WP_106688562.1|2574177_2574561_-|LysM-peptidoglycan-binding-domain-containing-protein
MAVKAKYQSVLDLGEKLNIQNGDVWEENGILKVKGTAATQYEKNLIWDEIKAVAGTESPEDIKANITVADESIYAKHTVKSGDTLGKIAKHYYGNAGKYTAIFEANKDILNNPDVIHPDQELKIPNL
>NZ_CP049774.1|WP_106688563.1|2574942_2576775_+|30S-ribosomal-protein-S1
MAEKAQDAQVEATEAKQNNAPEVSEAQKNPEKFLKEFNWHNYQEGIDEVEDSQLKEFEKLVSENFVDTLDDEVVEGEVIHITDRDAIIDINAKSEGVISLNEFRYNPNLAVGDKVEVLIDVREDATGQLVLSHRKARVIKAWDRVNKAHETGEIVNGFVKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGVDGLIHITDLSWSRINHPNEIVELDQKLNVVILDFDEDKSRIQLGLKQLSKHPWDALGEEVAVGDKVKGKVVVIADYGAFIEVAEGVEGLVHVSEMSWSTHLRSANDFVSVGDEVEAVILTLDREDRKMSLGIKQLTPDPWTDITTKYPVGSKHTGTVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCNVGDKLDVVVLELDVEGRKLSLGHKQTTENPWDKYEADFAIGTTHTAEIADVVDKGATIEFNEDIVAFVPSRHMEKEDGKMLKKGDTAEFKIIEFNKEFKRVVASHTAIFKAEEIANVKAAAKKAEAQAAEAKPTLGDANEALQALKDKMDGKK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	754530-754560	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	503540-503570	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	503589-503619	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	3441-3471	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	750422-750452	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	88418-88448	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	KJ018212	Shewanella sp. phage 1/41, complete genome	8131-8161	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	AP013757	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S33-C188, *** SEQUENCING IN PROGRESS ***	2578-2608	6	0.806
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	MN694367	Marine virus AFVG_250M957, complete genome	4789-4819	7	0.774
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	MN693806	Marine virus AFVG_250M575, complete genome	21630-21660	7	0.774
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP009118	Borreliella valaisiana Tom4006 plasmid cp26, complete sequence	3313-3343	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	6684-6714	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	32017-32047	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	21608-21638	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	AP013712	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S31-C208, *** SEQUENCING IN PROGRESS ***	1054-1084	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	49748-49778	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	95861-95891	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	MT773555	Myoviridae sp. isolate BML_3 genomic sequence	34080-34110	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	KC821622	Cellulophaga phage phi46:3, complete genome	16638-16668	8	0.742
NZ_CP049774_2	2.2|2565417|31|NZ_CP049774|CRISPRCasFinder	2565417-2565447	31	KM873719	Flavobacterium phage FCL-2, complete genome	19084-19114	9	0.71

1. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

2. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

3. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

4. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

5. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

6. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
atcatctaattctttttttgaacttacattt	Protospacer
  ****************** * **** *.*

7. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to KJ018212 (Shewanella sp. phage 1/41, complete genome) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tggggttaattcttcttttgccattacttct	Protospacer
** . .********.****** *********

8. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to AP013757 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S33-C188, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tgcatctaaatctttttttgcattatgtact	Protospacer
********* ************ *   * **

9. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to MN694367 (Marine virus AFVG_250M957, complete genome) position: , mismatch: 7, identity: 0.774

tgcatctaattctttttttgcaattacttct	CRISPR spacer
agcatctgattctttttttgctatttgttta	Protospacer
 ******.************* ***  **. 

10. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to MN693806 (Marine virus AFVG_250M575, complete genome) position: , mismatch: 7, identity: 0.774

tgcatctaattctttttttgcaattacttct	CRISPR spacer
agcatctaattctctttttggaatacctcca	Protospacer
 ************.****** ***  **.* 

11. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP009118 (Borreliella valaisiana Tom4006 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
agaatctaaatgtttttttgcaattacaatc	Protospacer
 * ****** * ***************  ..

12. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
cttcttcatttcttttttagcaattacttct	Protospacer
. . *..* ********* ************

13. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
agttgctaattctttttttgccattccttgg	Protospacer
 *.  **************** *** ***  

14. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
agttgctaattctttttttgccattccttgg	Protospacer
 *.  **************** *** ***  

15. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to AP013712 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S31-C208, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tgtatctaattctttgtttgcaaacgcaatt	Protospacer
**.************ ******* ..*  .*

16. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tgcatctaatgcttttttagcaacaaaaatt	Protospacer
********** ******* ****. *   .*

17. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tgcttctaattcttttttggcaacatttaat	Protospacer
*** ************** ****.  .*  *

18. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to MT773555 (Myoviridae sp. isolate BML_3 genomic sequence) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
ttgtgctaattcttttgttgcaaatactcca	Protospacer
*    *********** ****** ****.* 

19. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to KC821622 (Cellulophaga phage phi46:3, complete genome) position: , mismatch: 8, identity: 0.742

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tttctttaattctattttcgcaattacttaa	Protospacer
* . *.******* ****.**********  

20. spacer 2.2|2565417|31|NZ_CP049774|CRISPRCasFinder matches to KM873719 (Flavobacterium phage FCL-2, complete genome) position: , mismatch: 9, identity: 0.71

tgcatctaattctttttttgcaattacttct	CRISPR spacer
tgcttctaattcttcttttgcaaccccaata	Protospacer
*** **********.********.. *  . 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1162101 : 1171690	11	Enterobacteria_phage(37.5%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP049774|1162101:1171690|DBSCAN-SWA
TTTAAACAATCATTCCTGCAGCAACAGTCTCATTTGTAGCATCATCAACTAAGATTATGCTTCCTGTAGTTCTGTTTTCTCTATAAGAATCGATCATTAATGGTTTTGTTGTTCTAATTTTTACTTTAGAGATGTCATTCATTTTTAATTCTACATCATCATTTATTCTTTCTAAAGTATTTATATCTATTTTGTAAACAACTTCTTTTATCATCGCTTTTTGATCATTAGAAGTGTGTTTAATGGTGTATTTAGCTCTTGGTTTGGCCGGACTATTGTTTAACCAACATAACATCACTTCAATATCTTGTGAAGGTTCTGGTTTGTTGTTTGATCTTACAATCATATCTCCGCGACTAATATCTATATCGTCTTCTAATGTCATAGATACAGACATAGGTGCAAAAGCTTCTTTTAACTCTCCATCTAATGTGTCTATAGTTTTAATCTTAGAGGTGAAACCAGATGGCATTACTGTAACCTCATCACCTGGTCTAAAAATACCACTTGCTACTCGACCAGCATAACCACGATAGTCTATAAACTCATCTCTTTGTGGTCTTAAAACGGTTTGTACAGGAAAACGTGCATCTACTTTATTTATGTCGCTACTAATGTGCATAGTCTCTAAAGTATGAAGCATTGGTGCTCCTTGATACCATTTCATGTTTTCAGATTTATTAACTACGTTATCTCCTAATAGAGCACTCATAGGGATAAATCTAACGTCTTTCACTAGCATTTTTGAAGATATTTCTTCAAATTGAGATACTATGTTGTTATAAACATCTTCTGAAAAGTCTACCAAATCCATCTTATTAATACACACAATAATGTGAGGAATCTGTAATAAAGATGCTATAAAGGCGTGTCTTTTTGTTTGTTCTATTACACCATGTCTTGCATCTACTAATATTGTTGCAACGTTAGCTGTTGAAGCTCCTGTTACCATATTACGTGTATACTGTATGTGTCCTGGTGTATCTGCTATGATGAATTTACGTTTAGGTGTTGTAAAATATCTGTAAGCTACATCTATGGTAATTCCTTGTTCTCTTTCGTCTCTTAAACCATCTGTAAACAAGGCTAAATCTACGCCATCATGACCTTTTTTCTTACTTGTATTTTCTATCGCTTCTAATTGGTCTTCAAAAATTGATTTAGAATCGTATAATAAACGACCAATTAAAGTACTTTTTCCATCGTCTACACTTCCTGCTGTTGTAAATCTTAATAGTTGATTGTTATCTAACATTTTATAAGTCTTATTTGGTGTTTAATTAAAAATATCCTTGTCTTTTACGATCTTCCATTGCAGATTCTGATCTTTTATCATCACTACGGTTACCTCTTTCGGTTTGACGCATTGCTGAAACTTCTTGAGCTATTTTTTCTACTGTATCTGCATCAGATTCTATTCCTCCTGTAATGGTAATATCTCCTAAGGTTCTAAATCTAATCTTTTTGGTTTCTATAGTTTCGTTTTCGTCTAGAATTAAAAATTCTGAATTTGGTATCCATGATCCATTACGCCATACTACTTCTCTCTCGTGTGCAAAATATAAAGATGGTATCGCAATGTTTTCTCTTTTTATGTAATTCCACACATCCATTTCTGTCCAGTTACTTATTGGGAATGCTCTAAAATGCTCTCCTTCAAAATGCTTACCATTAAAGATATTCCATAGTTCTGGTCTTTGATTTTTTGGATCCCATTGTCCAAAATCGTCTCTATGAGAGAAAAAGCGCTCTTTTGCTCTTGCTTTTTCTTCGTCACGTCTTCCTCCACCAATTGCACAGTCTATTTTATTTGCTTCTATTGCATCTAAAAGTGTTGTGATTTGTAATGCATTTCGTGTTGCATTTTTTCCTTTTTCTTCAGCAACTCTTCCTTCATCTATAGATTCTTGTACAGATCCAACAATTAAGTTAGCGCCTAATTCTTTTATTAAATCATCTCTAAATTGAATGGTTTCTGGAAAGTTATGTCCTGTATCAACATGCATTAAAGAGAAAGGGATTTTACTTGGGTAAAATGCTTTTCTTGCCAAATGTGTTACAACTATCGAGTCTTTTCCTCCAGAAAATAATATTACTGGATTTTGAAATTGTGCCCATACTTCTCGCAATACAAAGATTGCTTCACTTTCTAATTCGTCTAAATAATTTAAATAATATTTACTCATCTTTGAGTTGTAATTTTGGTTGAATATATTTTAATACTTCGTTTACAGATTGCTCTATTGTTAAGTTTTCTGTTATAATTTCTAAATCGGGATTTTCTGGCGCTTCGTATGGCGCAGAAATACCTGTCATGTTTTTTATTTCTCCTGCTCTTGCTTTTTTGTACAAGCCTTTTACGTCTCTTTTTTCACATTCTTCAACACTAGTATTGACGTAAATCTCGACAAAATTACTGTTTTTGAGGATATTCTTTACATTTTCTCGGTCTTTTTTATAAGGAGACACAAATGCTGCTAATACCACATTGCCTGCTTCTACCATTAGATTTGCTATTTCGGCAATTCTTCTAATGTTTTCTGTTCTATCTTCTGGTGCAAAGGTTAAATCCTTATTTATTCCTTTTCTAATATTATCACCATCAAGAACATAGGTTTTTATTCCTTTTTTATGTAATTCTAGTTCTACTAGATTGGCTATTGTTGATTTTCCTGAGCCAGATAATCCAGTAAACCACATTAAAAAGGAATTATGATTATTTAGCTTATTTCTATCTGATTTAGTAACTTGATAATTATGTTTAATTATGTGGTTACTAATGTCTATGTTATTTTCTTCTTTCATTTAATCCATAATTTATCTTATACCATGTACGCTCATGCAGGTAATATAATATCATTTTTGTTATGACTTCTGCAAATCCAATTTTTAGTCCTGTTAATGGATCACCAGATATAATCCAAGCTAAAATCATTGTATCTAATGTTCCTATAAATCGCCATGTAATTGTCTTTGCAATATGTCTTTTGCGGCTTTCTAATATTCTACCATCTTTAGACAGGTTTATTTTAAACCATGCTCTTTCATGTAGATAATATAATAGCATTTTTGTTATGACTTCTGCAAACCCAATTTTTAGTCCTGTAAAAGGATTACCTGATATAATCCAAGACAGAATAATAGTATCTATAGTTCCTACTATTCGCCAAGTTATTGTTTTAGCAATATGCCTTTTATGTGATACGTCTTTCATCTATTTAGACACTAAAAACCAAGGATTTAATAAATTTTTCTTGTTATATAATAATGCTTCATTTGTTGCTTTAGATATTACTTCTATTCCAACTGCATTACATATGGCTTGCCCTGCTGCAGTATCCCATTCCATAGTTGGAGCAAAACGCGGATAAACATCTGCTTTTCCTTCTGCAACTAAACAAAATTTTAAAGAACTGCCTTTAGATACTATTTCTACATTTTTTCCTTGTTGTTTTAATTGTTCTACGTAATCAAGTGTTTCTTGACTCATGTGAGAACGACTTCCAACAACTTCTACTAATGTTGATTCTTCTTGTTTTGGTGTTAGTTTAACTGCTAAACTTAAAACTTCATCTATTGAAACATCATGAGCATTTAATTCTGCTTTAAAAGCTTGTTTGTTTTCTACATCTGCAAAATAGATAGTTTTAATTGCTGGGACATAAATTACGCCTAATTTTGGAATTCCTTTTTGTGCCAATGCAATGTTTACTGTAAACTCTCCATTACGTTTTATAAACTCTTTTGTACCATCTACTGGATCTACAATCCAACACATATCCCACAGCTTTCTAACTTCGTACTCTGTTTGCTTGTTTTCTTCTGAAATAACAGGAATTTTAGTTGGTACTAAAAAGGTGTTTATAATGTCATTAGCTCTTTTATCTGCTTCAGTTAAAGGTGATTTATCGTCTTTTACTTCTACAGCAAAGTCTGAATCATAAACATCCATAATTGCTTTTCCTGCATTTAAAGAGGCTTGTATTGCTGTTTTTAAGTTATCTGAAATGCTATTTTTGCTCATTGTTTTTGATATAATATTTTATTGTGTGTTCTATTCCTTTTAAAAAGGAGAACTCAGGGTTGTATTCAAAATTTGTTTTGGCTTTAGATATGTCTGCTAAAGAGTGCTTTACATCACCTTGTCTTTCTGGTCCATTCGTTATTTTGGAAGACGTTGAAATGTTTAAAGCTGAAAGTCCGTTTATAATGGCTTCAACTAATTCATTTAAATTAGTATTATCACCAAAAGCAACATTATATACTTGATTAACTGCGTTTGGGTTATCTGTTAAAGCCGCTTTTATATTGGCTTGTACTACATTTTCAATGTATGTAAAATCTCTAGAATGCTTTCCATCACCATTGATAATAACCTCTTCATTATTTAAAAAACGTCCTATAAATTTTGGGATTACTGCAGCGTAAGCTCCGTTAGGATCTTGTCTTTGTCCAAACACATTAAAATACCTTAAACCAATAGTTTCTAAACCATAGGTTTTATAGAATACATCTGCATAAAGCTCGTTTACAAATTTGGTAACTGCGTATGGTGATAATGGCTTACCTATGTTGTCTTCTACTTTTGGTAGTTGCTTACTATCGCCATATGTACTTGACGATGCGGCATATACTATTCGTTTTACTGTTGAAGACTCTTTAGCAGCCACCAACATGTTTAAAAAACCAGAAATATTGACAGCGTTAGAGGTTATTGGATCGTTAATTGATCGTGGTACAGAACCTAAAGCTGCTTGATGTAAGACGTAATCTACATCTTGCATTGCTTGTTTACAAGTATCTAAATCTCTAATATCGCCTTCTATAAAATCGCAATTAGATTGTTTGATAAAATCGCTAATATTGGAAAGTTTTCCTGTTGAAAGATTATCTAAAACTATTACTTTTTTCGCCTGATATTTTAGTAAATATTCTACTAGATTTGAGCCAATAAATCCTGCGCCACCTGTTACTAAAAAGCACAGGTTTTTTATTTCTTTTTTATGGAATAAAGTTTTATACATTTTAAAGGCGTTTGTCTATTAAAGAAGTTTTTAATGTTCCTTTTACGTCGTACACAACAGAATTATCCTTTTTAAAATTTATAAAATCAAACCCATTAAATTCATTATGAGAAACAACGTGAATTATTCCGTCGTATTTATTTTTAATATCAGAAACTAAACTAATATTATATTCTTCTTCAACTTCTTTTATATCTGCCCAAGGATCATAAACATCTACATCAATATTATAAGATTTTAAACTTTTATATACGTCTATTGCTTTTGTGTTTCTTATATCAGGACAATTCTCTTTAAAAGTTATACCAAGCATTAAAATCTTAGCATTTTTTATTTCTATATCCTTGCTAAGCATAAGTTTTACAAAATCTGATGCTACAAATTCTCCCATAGAGTCGTTAAGTCGTCTTCCTGCTAAAATTATTTCTGGATGATAACCTACTTCTTGAGCTTTTTGCGCCAAATAATAAGGATCTACACCTATACAATGTCCACCAACTAAACCTGGTTTAAATGGAAGAAAATTCCACTTTGTAGAGGCTGCTTCTAGAACTGCTTGCGTATCTATTTCTAGTTTATTAAAAATTTTTGCTAGTTCGTTTACAAAAGCAATATTAATATCTCTTTGTGCATTTTCAATAACTTTTGCCGCTTCTGCAGTCTTTATAGAAGGTGCTAAATGTGTTCCTGCTGTAATAATAGAGGCGTATAAATTATCTACAATTTCTGCTGTTTTTGGCGTAGAGCCAGAAGTTACTTTTTTAATCTTGGTAATAGTATGTTTTTTATCGCCTGGATTTATTCTTTCTGGTGAATATCCACATGTAAAATCTTTATTAAAAGTAAGTCCGCTAACTTCTTCTAAAATTGGCGCACAAACTTCTTCGGTAACACCTGGATACACTGTAGACTCATAAATTACAATGTCTTCTTTTTTTAAATATTCTCCAATGGTTTGCGAAGACTTTATTAATGGTGTTAATAATGGTCTATTATTAACATCAACAGGTGTAGGTACTGTAACTATGTATATATTACAATTGGCTAAATCTTCTTTTTGATTTGTGATTTTTAAGCCCAGTTTACTAGTCTTTAAAACAGCTTTAAGATCTTTTTCTTGAACTTCTAATGTGCTGTCTACTCCTGTATTTAACTCAGATACTCTATTGGCATTTATATCAAATCCAATAACTTTATATTTCTTTGAAAACTCTACAGCTAGAGGTAATCCTACATACCCTAACCCTATTACAGCTATTTTAATATTCATAATCAGCTATTTTGGTCAAAAGTAATTGCTTTTAAACACTTATCTAAACTTTTCTGCCAATTTACAGGTTTAAAATTCAAAAGTGTATGTATTTTTTTAGTATTTAAAACACTGTATGCTGGCCTAGTAGCTAATGTTTTAAACGTTTTTGAGTCTGTTTTTTTTAGCGTAATACTTGATTTTGTTAGATTAAAAATTTCTTTTGCAAAATCATACCAAGTAATTTCTGCTTGATTAGAATAATGATAAATACCAAATTGTTGTGATTTACTATTTATAATTTTTAAAATAACAGCTGCTAGATCTTTTGCATACGTTGGACTTCCTGTTTGATCATCAACTACACTCAATTCTTCTCTTTCTTTTGATAACCTCAACATGGTTTTTACAAAATTACTTCCAAATTCTGAATATAACCATGATGTACGAATAATAAAATATTGCGATAAAGTAGAGGTTATTTGTAGTTCTCCGTCTCGTTTTGTTTTTCCGTATACTGATATTGGATTTGTCTTATCTTCTTCGGTATAAGGTGTTTTTACTTGTCCATCAAAAACAAAATCTGTTGAAATATGTATCAAAGTCACGTTATTTTTAAAACAAGCATGCGCTAAGTTTTTAGCTCCAATTTCATTGATCTGTTTAGCTTTTTCTGTCTCTTCTTCTGCTTTATCTACTGCTGTGTATGCTGCGCAATTAATACAATAGTCAAAAGTATTATTTTTAAAATAAGCTTCTACTTCTATGTTATTAGAAATATCTAAATCGTTGCTGCCTAAAAACACAAAATCTAACGTTTTAAAGTCGTTAGATATAGATTGCAAACATTGTCCTAATTGCCCTTTTCCTCCTGTTACTAATACTTTTGTCATGGTGAAAACTGCTTTAAGGTTGGTAGTTTTAAATCTTTATCTGAAATTAACAATTCACCTTCATTTAGCAACCAATCTATATTTAAATCGGAATCATTATACATAATTCCAATTTCTGCATCTTTGTTATACCAATTATCACATTTGTAATTAAATACTGCTGTTTGACTCAACACTACAAAACCGTGTAAAAATCCTCTTGGTATAAATAGTTGCTTTTTGTTTTTAGAAGATAGTTTTACTGAAAAATGTTGCAAGTATGTAGGTGAATCTTTTCTAAAATCTATAGCTACGTCTAGTACTTCGCCTTGTGTTACTCTTACTAATTTAGCTTGAGCAAACTCATCTTTTTGCCCGTGTAATCCTCTTAAAACTCCACGAGAAGAAAAAGACTCGTTGTCTTGTACAAAATTTATATTTTGGTTGATCAGTTTATCAAACGATTGTTTGTTGTAGCTTTCAAAAAAATAGCCTCTTGAATCACCAAAAACAGTTGGTTCTAGAATATAACAACCTTGTAGCTTAGTTTCTTTAGCAATCATTAGTCTTCTTTTACTAAGCTTAATAAATGTTTACCATAACCACTTTTTAAAAGTGGCGTAGCAAGGTCTATTAACTGTTGTTTAGTTATAAAACCACTTGTATATGCAGCTTCTTCTATCGCTCCTATTTTTAACCCTTGACGTTCTTCTATAACTTGAACAAATTGAGAGGCTTGCATTAAAGATTTAAATGTACCTGTATCTAACCAAGCCGTACCTTTATCTAAAATACTTACTTGTAGCTTACCTTGCTCTAAATAAGCTTTGTTTACATCGGTGATTTCTAATTCGCCTCTTTGACTTGGTTTAATATTTTTTGCAATTTTTACTACCTCATTATCATAAAAATATATTCCAGGAACTGCGTAATTGGATTTTGGATTTTCGGGCTTTTCTTCAATAGAAAGTGCTTTGCCTTCTTTATCAAAATTAACTACACCATAACGTTCTGGATCTGTAACGTGATAAGCATACACAATACCTCCATCAGGATTATTATTTGCTTTTAACAGGTCTGCAAGTCCAGTCCCATAAAAAATATTATCTCCTAAGATTAGTGCTACTTTGTCTTCTCCTATAAATTCTTCTCCTATAATAAATGCTTCTGCAAGACCGTTTGGTGCGTCTTGTACTGCATATTGAAAAGTACAGCCTAAGCTTGATCCATCTCCTAAAAGCTGTTTAAAAAAAGGAACGTGTTCTGGTGTAGAAATTATTAGAATTTCATTTATACCAGCTTGCATTAATGTAGAAAGCGGATAATATATCATTGGCTTATCATAAATAGGCATTAACTGCTTACTTAATACTTTTGTCAATGGGTGAAGTCTTGTTCCTGATCCGCCTGCTAAAATTATTCCTTTCATTAATCAGTATATTTTTTTAGGTACCAATCTATGGTTTTTTTTATGCCTGTTTCAAAGTTTTCGTCTGCTTTCCAACCTAATTCGTTTTCAACTTTAGAAGCATCTATTGCGTATCTAAAATCATGACCTGGTCTGTCTGTTACAAAAGTTATTTGATCTTTATATGATTTGTCTGCAGGCTTTATTTCATCTAAAATTGAACAGATAGTGTTTACAATGTACAGATTATTTCTTTCATTTCTACCTCCAATATTGTAAGTTTCTCCAGCTTTTCCTGTTTTAAAAACTAGGTCTATACCTTTACAGTGATCTAAGACATATAACCAATCTCTAACATTTGTTCCATCACCATAAATAGGAATATTTTCTCCTGAAATAGCTTTTCTGATGATTGTTGGTATTAGCTTCTCGTCATGCTGTTTTGGTCCATAATTGTTAGAACAATTTGTGGTAACGACATTCATCCCATAGGTGTGAAAATAGCTTCTAATGATAAAATCTGAAGATGCTTTAGATGCACTATACGGACTATTTGGTGCATAAGGCGTGTTTTCTGTAAACAATCCTGTTTCTCCTAAGGAACCATAAACCTCATCTGTAGATATATGATGAAACCTGTTGTTTTCGCAACCGTCTTTGTATTTAAATGGTGCTTCCATCCAATTGGATTTTGCTACATCTATCAAATTAAAGGTTCCTGAAATATTAGTATCTACAAATGCACTTGGGTTATTAATTGAATTATCAACATGAGACTCTGCAGCAAAATGTATAACGCCATCAAATTGATATTTATCAAATAATGATTGAACTAAACTTCTATCACAAATATCGCCTTTTACAAAGCTATAATTCGGGTTATTTTCTACTTCTTTTAAATTAGAAAGCTCTCCTGCATAGGTGAGCTTATCTAAATTTACAACTTTAGTTGTTGGATTATTTTCAAGAAAATATGGGATGAAATTAGATCCTATAAATCCTGCGCCTCCAGTTACAAGTACCGATCTATTCTTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP049774|1162101:1171690|1169262_1169808_-|WP_106688068.1|DBSCAN-SWA
MIAKETKLQGCYILEPTVFGDSRGYFFESYNKQSFDKLINQNINFVQDNESFSSRGVLRGLHGQKDEFAQAKLVRVTQGEVLDVAIDFRKDSPTYLQHFSVKLSSKNKKQLFIPRGFLHGFVVLSQTAVFNYKCDNWYNKDAEIGIMYNDSDLNIDWLLNEGELLISDKDLKLPTLKQFSP
>NZ_CP049774|1162101:1171690|1164278_1164887_-|WP_106688180.1|DBSCAN-SWA
MDISNHIIKHNYQVTKSDRNKLNNHNSFLMWFTGLSGSGKSTIANLVELELHKKGIKTYVLDGDNIRKGINKDLTFAPEDRTENIRRIAEIANLMVEAGNVVLAAFVSPYKKDRENVKNILKNSNFVEIYVNTSVEECEKRDVKGLYKKARAGEIKNMTGISAPYEAPENPDLEIITENLTIEQSVNEVLKYIQPKLQLKDE
>NZ_CP049774|1162101:1171690|1165314_1166124_-|WP_106688064.1|DBSCAN-SWA
MSKNSISDNLKTAIQASLNAGKAIMDVYDSDFAVEVKDDKSPLTEADKRANDIINTFLVPTKIPVISEENKQTEYEVRKLWDMCWIVDPVDGTKEFIKRNGEFTVNIALAQKGIPKLGVIYVPAIKTIYFADVENKQAFKAELNAHDVSIDEVLSLAVKLTPKQEESTLVEVVGSRSHMSQETLDYVEQLKQQGKNVEIVSKGSSLKFCLVAEGKADVYPRFAPTMEWDTAAGQAICNAVGIEVISKATNEALLYNKKNLLNPWFLVSK
>NZ_CP049774|1162101:1171690|1164888_1165314_-|WP_106688063.1|DBSCAN-SWA
MKDVSHKRHIAKTITWRIVGTIDTIILSWIISGNPFTGLKIGFAEVITKMLLYYLHERAWFKINLSKDGRILESRKRHIAKTITWRFIGTLDTMILAWIISGDPLTGLKIGFAEVITKMILYYLHERTWYKINYGLNERRK
>NZ_CP049774|1162101:1171690|1166110_1167124_-|WP_106688065.1|DBSCAN-SWA
MYKTLFHKKEIKNLCFLVTGGAGFIGSNLVEYLLKYQAKKVIVLDNLSTGKLSNISDFIKQSNCDFIEGDIRDLDTCKQAMQDVDYVLHQAALGSVPRSINDPITSNAVNISGFLNMLVAAKESSTVKRIVYAASSSTYGDSKQLPKVEDNIGKPLSPYAVTKFVNELYADVFYKTYGLETIGLRYFNVFGQRQDPNGAYAAVIPKFIGRFLNNEEVIINGDGKHSRDFTYIENVVQANIKAALTDNPNAVNQVYNVAFGDNTNLNELVEAIINGLSALNISTSSKITNGPERQGDVKHSLADISKAKTNFEYNPEFSFLKGIEHTIKYYIKNNEQK
>NZ_CP049774|1162101:1171690|1162101_1163355_-|WP_106688061.1|DBSCAN-SWA
MLDNNQLLRFTTAGSVDDGKSTLIGRLLYDSKSIFEDQLEAIENTSKKKGHDGVDLALFTDGLRDEREQGITIDVAYRYFTTPKRKFIIADTPGHIQYTRNMVTGASTANVATILVDARHGVIEQTKRHAFIASLLQIPHIIVCINKMDLVDFSEDVYNNIVSQFEEISSKMLVKDVRFIPMSALLGDNVVNKSENMKWYQGAPMLHTLETMHISSDINKVDARFPVQTVLRPQRDEFIDYRGYAGRVASGIFRPGDEVTVMPSGFTSKIKTIDTLDGELKEAFAPMSVSMTLEDDIDISRGDMIVRSNNKPEPSQDIEVMLCWLNNSPAKPRAKYTIKHTSNDQKAMIKEVVYKIDINTLERINDDVELKMNDISKVKIRTTKPLMIDSYRENRTTGSIILVDDATNETVAAGMIV
>NZ_CP049774|1162101:1171690|1170673_1171690_-|WP_106688070.1|DBSCAN-SWA
MKNRSVLVTGGAGFIGSNFIPYFLENNPTTKVVNLDKLTYAGELSNLKEVENNPNYSFVKGDICDRSLVQSLFDKYQFDGVIHFAAESHVDNSINNPSAFVDTNISGTFNLIDVAKSNWMEAPFKYKDGCENNRFHHISTDEVYGSLGETGLFTENTPYAPNSPYSASKASSDFIIRSYFHTYGMNVVTTNCSNNYGPKQHDEKLIPTIIRKAISGENIPIYGDGTNVRDWLYVLDHCKGIDLVFKTGKAGETYNIGGRNERNNLYIVNTICSILDEIKPADKSYKDQITFVTDRPGHDFRYAIDASKVENELGWKADENFETGIKKTIDWYLKKYTD
>NZ_CP049774|1162101:1171690|1167125_1168394_-|WP_106688066.1|DBSCAN-SWA
MNIKIAVIGLGYVGLPLAVEFSKKYKVIGFDINANRVSELNTGVDSTLEVQEKDLKAVLKTSKLGLKITNQKEDLANCNIYIVTVPTPVDVNNRPLLTPLIKSSQTIGEYLKKEDIVIYESTVYPGVTEEVCAPILEEVSGLTFNKDFTCGYSPERINPGDKKHTITKIKKVTSGSTPKTAEIVDNLYASIITAGTHLAPSIKTAEAAKVIENAQRDINIAFVNELAKIFNKLEIDTQAVLEAASTKWNFLPFKPGLVGGHCIGVDPYYLAQKAQEVGYHPEIILAGRRLNDSMGEFVASDFVKLMLSKDIEIKNAKILMLGITFKENCPDIRNTKAIDVYKSLKSYNIDVDVYDPWADIKEVEEEYNISLVSDIKNKYDGIIHVVSHNEFNGFDFINFKKDNSVVYDVKGTLKTSLIDKRL
>NZ_CP049774|1162101:1171690|1168396_1169266_-|WP_106688067.1|DBSCAN-SWA
MTKVLVTGGKGQLGQCLQSISNDFKTLDFVFLGSNDLDISNNIEVEAYFKNNTFDYCINCAAYTAVDKAEEETEKAKQINEIGAKNLAHACFKNNVTLIHISTDFVFDGQVKTPYTEEDKTNPISVYGKTKRDGELQITSTLSQYFIIRTSWLYSEFGSNFVKTMLRLSKEREELSVVDDQTGSPTYAKDLAAVILKIINSKSQQFGIYHYSNQAEITWYDFAKEIFNLTKSSITLKKTDSKTFKTLATRPAYSVLNTKKIHTLLNFKPVNWQKSLDKCLKAITFDQNS
>NZ_CP049774|1162101:1171690|1169807_1170674_-|WP_106688069.1|DBSCAN-SWA
MKGIILAGGSGTRLHPLTKVLSKQLMPIYDKPMIYYPLSTLMQAGINEILIISTPEHVPFFKQLLGDGSSLGCTFQYAVQDAPNGLAEAFIIGEEFIGEDKVALILGDNIFYGTGLADLLKANNNPDGGIVYAYHVTDPERYGVVNFDKEGKALSIEEKPENPKSNYAVPGIYFYDNEVVKIAKNIKPSQRGELEITDVNKAYLEQGKLQVSILDKGTAWLDTGTFKSLMQASQFVQVIEERQGLKIGAIEEAAYTSGFITKQQLIDLATPLLKSGYGKHLLSLVKED
>NZ_CP049774|1162101:1171690|1163380_1164286_-|WP_106688062.1|DBSCAN-SWA
MSKYYLNYLDELESEAIFVLREVWAQFQNPVILFSGGKDSIVVTHLARKAFYPSKIPFSLMHVDTGHNFPETIQFRDDLIKELGANLIVGSVQESIDEGRVAEEKGKNATRNALQITTLLDAIEANKIDCAIGGGRRDEEKARAKERFFSHRDDFGQWDPKNQRPELWNIFNGKHFEGEHFRAFPISNWTEMDVWNYIKRENIAIPSLYFAHEREVVWRNGSWIPNSEFLILDENETIETKKIRFRTLGDITITGGIESDADTVEKIAQEVSAMRQTERGNRSDDKRSESAMEDRKRQGYF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106688061.1|1162101_1163355_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	3.8e-31	25.3
WP_106688062.1|1163380_1164286_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_106688180.1|1164278_1164887_-	adenylyl-sulfate kinase	A0A2P1ELS9	Moumouvirus	1.0e-26	41.6
WP_106688063.1|1164888_1165314_-	DUF2061 domain-containing protein	NA	NA	NA	NA
WP_106688064.1|1165314_1166124_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_106688065.1|1166110_1167124_-	SDR family oxidoreductase	A0A2K9L0I7	Tupanvirus	6.1e-88	53.2
WP_106688066.1|1167125_1168394_-	nucleotide sugar dehydrogenase	A0A218MKK1	uncultured_virus	1.0e-07	24.9
WP_106688067.1|1168396_1169266_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	6.9e-48	44.1
WP_106688068.1|1169262_1169808_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-38	48.6
WP_106688069.1|1169807_1170674_-	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	5.2e-96	61.0
WP_106688070.1|1170673_1171690_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-81	47.0