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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP027548 Escherichia coli strain 2014C-3061 chromosome, complete genome 7 crisprs cas3,cas8e,cse2gr11,cas7,cas5,cas1,csa3,DEDDh,c2c9_V-U4,DinG,RT,PD-DExK 0 12 15 0
NZ_CP027549 Escherichia coli strain 2014C-3061 plasmid unnamed, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP027548
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_1 215393-215665 Unclear I-E
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_2 241633-242394 TypeI-E I-E
12 spacers
cas1,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_3 1609360-1609483 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_4 2322856-2322947 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_5 2744079-2744223 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_6 4999845-5000096 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027548_7 5015955-5016072 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP027548_4 4.1|2322882|40|NZ_CP027548|CRISPRCasFinder 2322882-2322921 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP027548_3 3.1|1609403|38|NZ_CP027548|CRISPRCasFinder 1609403-1609440 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP053858 Rhizobium pusense strain 76 plasmid pR76, complete sequence 455664-455695 5 0.844
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP053858 Rhizobium pusense strain 76 plasmid pR76, complete sequence 455664-455695 5 0.844
NZ_CP027548_1 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 215483-215514 32 MH389777 Dickeya phage vB_DsoM_JA11, complete genome 116689-116720 6 0.812
NZ_CP027548_1 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 215483-215514 32 MH460462 Dickeya phage vB_DsoM_JA33, complete genome 116679-116710 6 0.812
NZ_CP027548_1 1.3|215544|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 215544-215575 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP027548_2 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242151-242182 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 270741-270772 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NC_017327 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence 1429126-1429157 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 450512-450543 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 1363718-1363749 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP009145 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence 259589-259620 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021801 Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence 156145-156176 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 108131-108162 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021824 Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence 136871-136902 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 308731-308762 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 386165-386196 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 1141409-1141440 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 239251-239282 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP021217 Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence 1491172-1491203 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP026526 Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence 173783-173814 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP019483 Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence 251909-251940 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NZ_CP019486 Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence 227862-227893 8 0.75
NZ_CP027548_2 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241968-241999 32 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 270403-270434 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 270741-270772 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NC_017327 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence 1429126-1429157 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 450512-450543 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 1363718-1363749 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP009145 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence 259589-259620 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021801 Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence 156145-156176 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 108131-108162 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021824 Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence 136871-136902 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 308731-308762 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 386165-386196 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 1141409-1141440 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 239251-239282 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP021217 Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence 1491172-1491203 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP026526 Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence 173783-173814 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP019483 Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence 251909-251940 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NZ_CP019486 Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence 227862-227893 8 0.75
NZ_CP027548_2 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242029-242060 32 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 270403-270434 8 0.75
NZ_CP027548_2 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242151-242182 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP027548_2 2.12|242334|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242334-242365 32 HM029250 Lactococcus phage 949, complete genome 55071-55102 8 0.75
NZ_CP027548_1 1.1|215422|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 215422-215453 32 NZ_CP040258 Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence 12838-12869 9 0.719
NZ_CP027548_1 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 215483-215514 32 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 712830-712861 9 0.719
NZ_CP027548_2 2.8|242090|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242090-242121 32 MT708550 Achromobacter phage Mano, complete genome 2686-2717 9 0.719
NZ_CP027548_2 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242151-242182 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP027548_2 2.10|242212|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242212-242243 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 9 0.719
NZ_CP027548_2 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241907-241938 32 MK449011 Streptococcus phage Javan92, complete genome 36157-36188 11 0.656
NZ_CP027548_2 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241907-241938 32 MK448835 Streptococcus phage Javan93, complete genome 36157-36188 11 0.656
NZ_CP027548_2 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241907-241938 32 MK448836 Streptococcus phage Javan95, complete genome 37400-37431 11 0.656
NZ_CP027548_2 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 241907-241938 32 MK448825 Streptococcus phage Javan639, complete genome 37400-37431 11 0.656
NZ_CP027548_2 2.12|242334|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT 242334-242365 32 NC_009760 Bacillus phage 0305phi8-36, complete genome 157057-157088 11 0.656

1. spacer 4.1|2322882|40|NZ_CP027548|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 3.1|1609403|38|NZ_CP027548|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 5, identity: 0.844

acggcg-aatatagctgtcaacgcgctcgacat	CRISPR spacer
-tggcgcaatatagctgtcgacgcgctcgtcaa	Protospacer
 .**** ************.********* ** 

4. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 5, identity: 0.844

acggcg-aatatagctgtcaacgcgctcgacat	CRISPR spacer
-tggcgcaatatagctgtcgacgcgctcgtcaa	Protospacer
 .**** ************.********* ** 

5. spacer 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 6, identity: 0.812

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
gcgttgatgtgcttgcaggtgttgcaggtaaa	Protospacer
********** *****.*********..**  

6. spacer 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 6, identity: 0.812

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
gcgttgatgtgcttgcaggtgttgcaggtaaa	Protospacer
********** *****.*********..**  

7. spacer 1.3|215544|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

--tttcagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgc--ttcaccggaacaccgacggtcac	Protospacer
  .*** **  **** ** ***************

8. spacer 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
tcagcttgttgtccgcgatgcggtacgcccgc	Protospacer
 **..************** ******** **.

9. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

10. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

11. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

12. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

13. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

14. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

15. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

16. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

17. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

18. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

19. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

20. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

21. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

22. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

23. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

24. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

25. spacer 2.6|241968|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

26. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

27. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

28. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

29. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

30. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

31. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

32. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

33. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

34. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

35. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

36. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

37. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

38. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

39. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

40. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

41. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

42. spacer 2.7|242029|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

43. spacer 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
ccgtgcggttgtccgcgatccggtaggcgcgc	Protospacer
 *.  . ****************** *****.

44. spacer 2.12|242334|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

tcggtggctggattgaaaaagaagata---atctg	CRISPR spacer
atggtggctggacagaaaaagaagagatagat---	Protospacer
 .**********. *********** *   **   

45. spacer 1.1|215422|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040258 (Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence) position: , mismatch: 9, identity: 0.719

gattttaataactgttgatctactccttgcaa	CRISPR spacer
aattttaataattgtcgatctacttcaggtgt	Protospacer
.**********.***.********.*  *.. 

46. spacer 1.2|215483|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
tcgttgatgttcttgctggtgctgaactggct	Protospacer
 *************** ****.** *   ..*

47. spacer 2.8|242090|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 9, identity: 0.719

tgagatcaaacgttagcccggcggtaatttgc	CRISPR spacer
ggcggtcaaaggtaagcccggcggtaatgcta	Protospacer
 * *.***** ** ************** .  

48. spacer 2.9|242151|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

------gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
cgcggggc------ttggccgcgatccggtccgcgcga	Protospacer
      **      *** ************ ****** 

49. spacer 2.10|242212|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ttccagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgcttcaccggaacaccgacggtcac	Protospacer
 .*.  *. **** ** ***************

50. spacer 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

51. spacer 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

52. spacer 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

53. spacer 2.5|241907|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

54. spacer 2.12|242334|32|NZ_CP027548|PILER-CR,CRISPRCasFinder,CRT matches to NC_009760 (Bacillus phage 0305phi8-36, complete genome) position: , mismatch: 11, identity: 0.656

tcggtggctggattgaaaaagaagataatctg	CRISPR spacer
cgctcatctcgattgaagaagaagataatcaa	Protospacer
.   .. ** *******.************ .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 416561 : 475900 70 Salmonella_phage(47.73%) holin,integrase,terminase,head,transposase,tRNA,tail attL 420708:420726|attR 486153:486171
DBSCAN-SWA_2 927824 : 1019061 119 Stx2-converting_phage(33.96%) holin,capsid,integrase,terminase,head,transposase,protease,tail attL 951537:951565|attR 999549:999577
DBSCAN-SWA_3 1191949 : 1283399 101 Escherichia_phage(40.0%) holin,portal,capsid,terminase,head,transposase,tail NA
DBSCAN-SWA_4 1385817 : 1464105 87 Escherichia_phage(35.09%) holin,portal,integrase,terminase,tRNA,protease,tail attL 1376107:1376122|attR 1457451:1457466
DBSCAN-SWA_5 1983190 : 2080555 115 Enterobacteria_phage(30.38%) holin,portal,integrase,terminase,head,transposase,protease,tail attL 2030273:2030331|attR 2076476:2076534
DBSCAN-SWA_6 2295693 : 2384678 93 Escherichia_phage(48.0%) lysis,holin,capsid,bacteriocin,portal,integrase,terminase,transposase,protease,tail attL 2321630:2321645|attR 2386399:2386414
DBSCAN-SWA_7 2415167 : 2468582 63 Enterobacteria_phage(39.13%) holin,capsid,portal,terminase,head,protease,tail NA
DBSCAN-SWA_8 2574438 : 2625372 55 uncultured_Caudovirales_phage(10.0%) capsid,integrase,terminase,tRNA,protease,tail attL 2578884:2578903|attR 2619465:2619484
DBSCAN-SWA_9 2628438 : 2657562 37 Salmonella_phage(85.71%) lysis,capsid,portal,integrase,terminase,head,plate,tail attL 2649126:2649140|attR 2660767:2660781
DBSCAN-SWA_10 2956555 : 2996790 47 Enterobacteria_phage(55.56%) transposase,protease,integrase,holin attL 2972361:2972407|attR 2996804:2996850
DBSCAN-SWA_11 3241058 : 3302768 52 Enterobacteria_phage(25.0%) holin,transposase,capsid,integrase attL 3264047:3264064|attR 3281068:3281085
DBSCAN-SWA_12 3329850 : 3375235 36 Cronobacter_phage(14.29%) transposase,plate,tRNA NA
DBSCAN-SWA_13 3590819 : 3666964 86 Enterobacteria_phage(37.5%) holin,capsid,portal,integrase,terminase,head,tRNA,tail attL 3632429:3632443|attR 3668150:3668164
DBSCAN-SWA_14 3852729 : 3920203 61 Stx2-converting_phage(23.53%) transposase,tRNA,protease,integrase attL 3892559:3892618|attR 3921387:3922154
DBSCAN-SWA_15 5055355 : 5101347 43 Escherichia_phage(18.75%) transposase,tRNA,protease,integrase attL 5046171:5046186|attR 5087010:5087025
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP027549
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4922 : 57713 43 Stx2-converting_phage(38.46%) holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage