CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP027438	Escherichia coli strain 2012C-4221 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
NZ_CP027439	Escherichia coli strain 2012C-4221 plasmid unnamed2, complete sequence	0 crisprs	NA	0	7
NZ_CP027437	Escherichia coli strain 2012C-4221 chromosome, complete genome	3 crisprs	DEDDh,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	7	8

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027437_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027437_1

380297-380420

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027437_1

>merge|NZ_CP027437|1|380297-380420|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP027437|1|1|380297-380420|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027437.1\|WP_106905945.1\|389572_390742_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP027437.1\|WP_000212678.1\|379855_380161_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP027437.1\|WP_000587573.1\|377301_378114_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP027437.1\|WP_000528342.1\|371716_371926_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP027437.1\|WP_000102278.1\|389317_389407_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP027437.1\|WP_000007283.1\|390887_391469_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP027437.1\|WP_001316419.1\|375847_376516_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP027437.1\|WP_000098896.1\|384301_385450_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP027437.1\|WP_106905941.1\|373030_375133_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP027437.1\|WP_001182362.1\|385740_386952_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP027437.1\|WP_001070230.1\|372383_373010_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP027437.1\|WP_001174939.1\|382032_383406_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP027437.1\|WP_000269493.1\|387064_387997_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP027437.1\|WP_106905942.1\|375136_375784_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP027437.1\|WP_001295403.1\|369747_371160_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP027437.1\|WP_106905944.1\|380735_381992_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP027437.1\|WP_106905943.1\|378125_379730_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP027437.1\|WP_000493947.1\|383620_384262_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP027437.1\|WP_000190982.1\|387993_389019_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP027437.1\|WP_001069971.1\|376512_377298_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968

Protein	Function_ID	Function_description	E-value
NZ_CP027437.1\|WP_106905945.1\|389572_390742_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.44374e-98
NZ_CP027437.1\|WP_000212678.1\|379855_380161_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP027437.1\|WP_000587573.1\|377301_378114_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.87964e-174
NZ_CP027437.1\|WP_000528342.1\|371716_371926_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP027437.1\|WP_000007283.1\|390887_391469_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP027437.1\|WP_001316419.1\|375847_376516_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.71626e-75
NZ_CP027437.1\|WP_000098896.1\|384301_385450_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP027437.1\|WP_106905941.1\|373030_375133_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP027437.1\|WP_001182362.1\|385740_386952_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP027437.1\|WP_001070230.1\|372383_373010_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP027437.1\|WP_001174939.1\|382032_383406_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP027437.1\|WP_000269493.1\|387064_387997_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP027437.1\|WP_106905942.1\|375136_375784_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.44955e-121
NZ_CP027437.1\|WP_001295403.1\|369747_371160_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP027437.1\|WP_106905944.1\|380735_381992_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP027437.1\|WP_106905943.1\|378125_379730_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP027437.1\|WP_000493947.1\|383620_384262_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP027437.1\|WP_000190982.1\|387993_389019_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP027437.1\|WP_001069971.1\|376512_377298_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	8.29767e-163

>NZ_CP027437.1|WP_000212678.1|379855_380161_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP027437.1|WP_106905943.1|378125_379730_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITTAGVMLATNQDLPSETFDLAVIATGHVWPDEEKVTRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVIFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP027437.1|WP_000587573.1|377301_378114_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP027437.1|WP_001069971.1|376512_377298_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVALHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP027437.1|WP_001316419.1|375847_376516_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP027437.1|WP_106905942.1|375136_375784_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDHADIACLTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP027437.1|WP_106905941.1|373030_375133_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKFMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTFCYSKGVFKRVLPAKEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>NZ_CP027437.1|WP_001070230.1|372383_373010_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP027437.1|WP_000528342.1|371716_371926_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP027437.1|WP_001295403.1|369747_371160_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP027437.1|WP_106905944.1|380735_381992_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGVTQLTAGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGGIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLHGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP027437.1|WP_001174939.1|382032_383406_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP027437.1|WP_000493947.1|383620_384262_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP027437.1|WP_000098896.1|384301_385450_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP027437.1|WP_001182362.1|385740_386952_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP027437.1|WP_000269493.1|387064_387997_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP027437.1|WP_000190982.1|387993_389019_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP027437.1|WP_000102278.1|389317_389407_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP027437.1|WP_106905945.1|389572_390742_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLCFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP027437.1|WP_000007283.1|390887_391469_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP027437_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027437_2

1099439-1099530

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027437_2

>merge|NZ_CP027437|2|1099439-1099530|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP027437|2|2|1099439-1099530|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027437.1\|WP_106906097.1\|1100835_1102077_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP027437.1\|WP_001126780.1\|1095676_1096063_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP027437.1\|WP_001544437.1\|1105208_1105808_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP027437.1\|WP_001340618.1\|1093881_1094973_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP027437.1\|WP_000420641.1\|1103890_1104811_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP027437.1\|WP_106906098.1\|1102368_1103631_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP027437.1\|WP_106906099.1\|1105804_1108351_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP027437.1\|WP_001028095.1\|1097481_1097976_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP027437.1\|WP_001120117.1\|1109652_1110345_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP027437.1\|WP_106906094.1\|1088953_1092916_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP027437.1\|WP_001225229.1\|1108350_1109523_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP027437.1\|WP_001446784.1\|1094972_1095665_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP027437.1\|WP_000979516.1\|1088689_1088899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027437.1\|WP_001001171.1\|1096880_1097471_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP027437.1\|WP_001143120.1\|1100570_1100798_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP027437.1\|WP_000024560.1\|1104810_1105116_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP027437.1\|WP_001151437.1\|1099953_1100550_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP027437.1\|WP_106906095.1\|1096070_1096871_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP027437.1\|WP_106906096.1\|1097996_1099325_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP027437.1\|WP_000191701.1\|1092955_1093594_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970

Protein	Function_ID	Function_description	E-value
NZ_CP027437.1\|WP_106906097.1\|1100835_1102077_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP027437.1\|WP_001126780.1\|1095676_1096063_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP027437.1\|WP_001544437.1\|1105208_1105808_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.58604e-84
NZ_CP027437.1\|WP_001340618.1\|1093881_1094973_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP027437.1\|WP_000420641.1\|1103890_1104811_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP027437.1\|WP_106906098.1\|1102368_1103631_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP027437.1\|WP_106906099.1\|1105804_1108351_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP027437.1\|WP_001028095.1\|1097481_1097976_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP027437.1\|WP_001120117.1\|1109652_1110345_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	2.39196e-137
NZ_CP027437.1\|WP_106906094.1\|1088953_1092916_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP027437.1\|WP_001225229.1\|1108350_1109523_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP027437.1\|WP_001446784.1\|1094972_1095665_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	1.68103e-168
NZ_CP027437.1\|WP_001001171.1\|1096880_1097471_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.00331e-130
NZ_CP027437.1\|WP_001143120.1\|1100570_1100798_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP027437.1\|WP_000024560.1\|1104810_1105116_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP027437.1\|WP_001151437.1\|1099953_1100550_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP027437.1\|WP_106906095.1\|1096070_1096871_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	7.73559e-140
NZ_CP027437.1\|WP_106906096.1\|1097996_1099325_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP027437.1\|WP_000191701.1\|1092955_1093594_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153

>NZ_CP027437.1|WP_106906096.1|1097996_1099325_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTAIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGIIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRSLVDVPPPEVVHQEP
>NZ_CP027437.1|WP_001028095.1|1097481_1097976_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP027437.1|WP_001001171.1|1096880_1097471_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP027437.1|WP_106906095.1|1096070_1096871_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIKRYAVVGHALGALVGMQLALDYPASVTMLVSVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSRHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP027437.1|WP_001126780.1|1095676_1096063_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP027437.1|WP_001446784.1|1094972_1095665_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTILTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP027437.1|WP_001340618.1|1093881_1094973_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP027437.1|WP_000191701.1|1092955_1093594_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP027437.1|WP_106906094.1|1088953_1092916_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQSVAAGEMSPVINPAEPKDIVGYVREATPSEVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTEQIAAALAAGNSVLAKPAEQTPLIAAQGIAILVEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVQALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP027437.1|WP_000979516.1|1088689_1088899_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP027437.1|WP_001151437.1|1099953_1100550_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP027437.1|WP_001143120.1|1100570_1100798_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP027437.1|WP_106906097.1|1100835_1102077_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYTYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQTVAAMEKELGKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRASAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP027437.1|WP_106906098.1|1102368_1103631_-|YccE-family-protein
MSSNIHGISCTANNYLKEAWSNIKNEHEKNQKYSITLFENTLVCFMRLYKEIRRQQAEDYIPCLECDSLEKEFEEIQNDNDLSLFMKTLRTNDKQIYSGVSGGITYTIQYVEDVNIVRVSLPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCLDDNENMSIQPARINTPGISDLDSGIDLSGISFIQSETNQALGLKYASVDGDGYCLLRAILVLKQHDYSWALVSYKTQKEVYDEFIKMVDKKTIEVLVDTAFYNLREDVKTLFGVDLQSDNKIQGRGSFLSWSFLFFKKEFIDSCLNDKKCILHLPEFIFNDNKTHLVLDTDPEKRINEVKNFLTALSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP027437.1|WP_000420641.1|1103890_1104811_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP027437.1|WP_000024560.1|1104810_1105116_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP027437.1|WP_001544437.1|1105208_1105808_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDNLRQKTLTALRQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP027437.1|WP_106906099.1|1105804_1108351_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRSATAAQAATEAVTSKEGILTGSHWGAIRATVKEGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPSVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP027437.1|WP_001225229.1|1108350_1109523_-|pentaheme-c-type-cytochrome-TorC
MRKFWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP027437.1|WP_001120117.1|1109652_1110345_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP027437_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027437_3

4106130-4106402

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

4 spacers

The CRISPR arrays of NZ_CP027437_3

>merge|NZ_CP027437|3|4106130-4106402|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCGAGCGGGGATAAACCGGCCGTCGCCGGATCAGCCTGGCTATGCCAGCAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGAACAAAATAAAAACCAACTGAATGATGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGAACCCTTGAACCGATAAGGGCGCTGTTTTGGAGTTCCCCGCGCCAGCGGGGATAAACCGGATAGGTGTTACACATATGACCTGGCACTGGCGAGTTTCCCGCGCCAGCGGGGATAACCAT

>NZ_CP027437|3|1|4106130-4106400|PILER-CR
GAGTTCCCCGCGCGAGCGGGGATAAAC	CGGCCGTCGCCGGATCAGCCTGGCTATGCCAGCA
GAGTTCCCCGCGCCAGCGGGGATAAAC	CGGACGAACAAAATAAAAACCAACTGAATGATGC
GAGTTCCCCGCGCCAGCGGGGATAAAC	CGCGAACCCTTGAACCGATAAGGGCGCTGTTTTG
GAGTTCCCCGCGCCAGCGGGGATAAAC	CGGATAGGTGTTACACATATGACCTGGCACTGGC
GAGTTTCCCGCGCCAGCGGGGATAACC

>NZ_CP027437|3|3|4106130-4106402|CRISPRCasFinder
GAGTTCCCCGCGCGAGCGGGGATAAACCG	GCCGTCGCCGGATCAGCCTGGCTATGCCAGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAACAAAATAAAAACCAACTGAATGATGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAACCCTTGAACCGATAAGGGCGCTGTTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATAGGTGTTACACATATGACCTGGCACTGGC
GAGTTTCCCGCGCCAGCGGGGATAACCAT

>NZ_CP027437|3|1|4106130-4106402|CRT
GAGTTCCCCGCGCGAGCGGGGATAAACCG	GCCGTCGCCGGATCAGCCTGGCTATGCCAGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAACAAAATAAAAACCAACTGAATGATGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGAACCCTTGAACCGATAAGGGCGCTGTTTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATAGGTGTTACACATATGACCTGGCACTGGC
GAGTTTCCCGCGCCAGCGGGGATAACCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027437.1\|WP_106906666.1\|4103952_4104825_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP027437.1\|WP_001164554.1\|4107951_4109229_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP027437.1\|WP_106906665.1\|4102594_4103893_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP027437.1\|WP_000987944.1\|4117241_4117607_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP027437.1\|WP_000186450.1\|4092721_4095478_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP027437.1\|WP_062875733.1\|4114041_4114902_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP027437.1\|WP_106906664.1\|4095534_4096836_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP027437.1\|WP_062875732.1\|4115049_4115625_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP027437.1\|WP_000021318.1\|4109547_4110333_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP027437.1\|WP_000226820.1\|4096883_4099118_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP027437.1\|WP_000059301.1\|4110402_4111857_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP027437.1\|WP_062875731.1\|4115641_4115902_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP027437.1\|WP_000254738.1\|4099443_4099779_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP027437.1\|WP_000581937.1\|4099195_4099444_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP027437.1\|WP_001199983.1\|4105118_4105790_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP027437.1\|WP_106906667.1\|4111950_4113288_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP027437.1\|WP_001071643.1\|4099850_4100642_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP027437.1\|WP_106906668.1\|4115892_4117164_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP027437.1\|WP_000210878.1\|4100869_4102507_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP027437.1\|WP_062875734.1\|4113265_4114045_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997

Protein	Function_ID	Function_description	E-value
NZ_CP027437.1\|WP_106906666.1\|4103952_4104825_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	9.48513e-95
NZ_CP027437.1\|WP_001164554.1\|4107951_4109229_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	5.08413e-29
NZ_CP027437.1\|WP_106906665.1\|4102594_4103893_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP027437.1\|WP_000987944.1\|4117241_4117607_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP027437.1\|WP_000186450.1\|4092721_4095478_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP027437.1\|WP_062875733.1\|4114041_4114902_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.72118e-86
NZ_CP027437.1\|WP_106906664.1\|4095534_4096836_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP027437.1\|WP_062875732.1\|4115049_4115625_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.04691e-87
NZ_CP027437.1\|WP_000021318.1\|4109547_4110333_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.13125e-139
NZ_CP027437.1\|WP_000226820.1\|4096883_4099118_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP027437.1\|WP_000059301.1\|4110402_4111857_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
NZ_CP027437.1\|WP_062875731.1\|4115641_4115902_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.02818e-42
NZ_CP027437.1\|WP_000254738.1\|4099443_4099779_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP027437.1\|WP_000581937.1\|4099195_4099444_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP027437.1\|WP_001199983.1\|4105118_4105790_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.8521e-155
NZ_CP027437.1\|WP_106906667.1\|4111950_4113288_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.29968e-50
NZ_CP027437.1\|WP_001071643.1\|4099850_4100642_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP027437.1\|WP_106906668.1\|4115892_4117164_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.71233e-125
NZ_CP027437.1\|WP_000210878.1\|4100869_4102507_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP027437.1\|WP_062875734.1\|4113265_4114045_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.21603e-64

>NZ_CP027437.1|WP_001199983.1|4105118_4105790_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILGKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP027437.1|WP_106906666.1|4103952_4104825_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPSLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVALSDRAVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESAYSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP027437.1|WP_106906665.1|4102594_4103893_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKVKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP027437.1|WP_000210878.1|4100869_4102507_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP027437.1|WP_001071643.1|4099850_4100642_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP027437.1|WP_000254738.1|4099443_4099779_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP027437.1|WP_000581937.1|4099195_4099444_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP027437.1|WP_000226820.1|4096883_4099118_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNVLAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP027437.1|WP_106906664.1|4095534_4096836_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP027437.1|WP_000186450.1|4092721_4095478_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP027437.1|WP_001164554.1|4107951_4109229_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRNTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP027437.1|WP_000021318.1|4109547_4110333_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP027437.1|WP_000059301.1|4110402_4111857_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP027437.1|WP_106906667.1|4111950_4113288_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPLMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQYFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP027437.1|WP_062875734.1|4113265_4114045_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAESPAMLCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP027437.1|WP_062875733.1|4114041_4114902_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIVSWLAEQDFSGCTLAHWQIEPQPAVAEQVLDALVEQWQRTPADVVIFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP027437.1|WP_062875732.1|4115049_4115625_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKHAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP027437.1|WP_062875731.1|4115641_4115902_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP027437.1|WP_106906668.1|4115892_4117164_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALHCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALAGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPSLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP027437.1|WP_000987944.1|4117241_4117607_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027437_2	2.1\|1099465\|40\|NZ_CP027437\|CRISPRCasFinder	1099465-1099504	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP027437_1	1.1\|380340\|38\|NZ_CP027437\|CRISPRCasFinder	380340-380377	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP027437_3	3.5\|4106159\|32\|NZ_CP027437\|CRISPRCasFinder,CRT	4106159-4106190	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224872-224903	7	0.781
NZ_CP027437_3	3.1\|4106157\|34\|NZ_CP027437\|PILER-CR	4106157-4106190	34	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224872-224905	8	0.765
NZ_CP027437_3	3.6\|4106220\|32\|NZ_CP027437\|CRISPRCasFinder,CRT	4106220-4106251	32	MN693555	Marine virus AFVG_25M96, complete genome	25577-25608	9	0.719
NZ_CP027437_3	3.6\|4106220\|32\|NZ_CP027437\|CRISPRCasFinder,CRT	4106220-4106251	32	LC168164	Tenacibaculum phage pT24 DNA, complete genome	13744-13775	10	0.688
NZ_CP027437_3	3.8\|4106342\|32\|NZ_CP027437\|CRISPRCasFinder,CRT	4106342-4106373	32	NZ_CP029549	Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence	3165-3196	10	0.688
NZ_CP027437_3	3.8\|4106342\|32\|NZ_CP027437\|CRISPRCasFinder,CRT	4106342-4106373	32	NZ_AP012543	Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence	9203-9234	10	0.688
NZ_CP027437_3	3.2\|4106218\|34\|NZ_CP027437\|PILER-CR	4106218-4106251	34	MN693555	Marine virus AFVG_25M96, complete genome	25577-25610	11	0.676
NZ_CP027437_3	3.2\|4106218\|34\|NZ_CP027437\|PILER-CR	4106218-4106251	34	LC168164	Tenacibaculum phage pT24 DNA, complete genome	13744-13777	12	0.647

1. spacer 2.1|1099465|40|NZ_CP027437|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 1.1|380340|38|NZ_CP027437|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 3.5|4106159|32|NZ_CP027437|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgccggatcagcctggcta-tgccagca	CRISPR spacer
gccgtcgccggatcagccggtctgctgctcgg-	Protospacer
****************** * **. ***. *

4. spacer 3.1|4106157|34|NZ_CP027437|PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

cggccgtcgccggatcagcctggcta-tgccagca	CRISPR spacer
gggccgtcgccggatcagccggtctgctgctcgg-	Protospacer
 ******************* * **. ***. *

5. spacer 3.6|4106220|32|NZ_CP027437|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

gacgaacaaaataaaaaccaactgaatgatgc	CRISPR spacer
agagaacaaaataaaaaccaatttaattacag	Protospacer
.. ******************.* *** *..

6. spacer 3.6|4106220|32|NZ_CP027437|CRISPRCasFinder,CRT matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 10, identity: 0.688

gacgaacaaaataaaaaccaactgaatgatgc	CRISPR spacer
ctttaacaaaataaaaacccaccgaatgggtg	Protospacer
  . *************** **.*****.

7. spacer 3.8|4106342|32|NZ_CP027437|CRISPRCasFinder,CRT matches to NZ_CP029549 (Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence) position: , mismatch: 10, identity: 0.688

gataggtgttacacatatgacctggcactggc	CRISPR spacer
agttcctgttacaaatattacctggcacttat	Protospacer
..*   ******* **** ********** ..

8. spacer 3.8|4106342|32|NZ_CP027437|CRISPRCasFinder,CRT matches to NZ_AP012543 (Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence) position: , mismatch: 10, identity: 0.688

gataggtgttacacatatgacctggcactggc	CRISPR spacer
agttcctgttacaaatattacctggcacttat	Protospacer
..*   ******* **** ********** ..

9. spacer 3.2|4106218|34|NZ_CP027437|PILER-CR matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 11, identity: 0.676

cggacgaacaaaataaaaaccaactgaatgatgc	CRISPR spacer
atagagaacaaaataaaaaccaatttaattacag	Protospacer
  .. ******************.* *** *..

10. spacer 3.2|4106218|34|NZ_CP027437|PILER-CR matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 12, identity: 0.647

cggacgaacaaaataaaaaccaactgaatgatgc	CRISPR spacer
ttctttaacaaaataaaaacccaccgaatgggtg	Protospacer
.   . *************** **.*****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9079 : 84923

Escherichia_phage(38.3%)

head,transposase,tail,holin,capsid,integrase,lysis,terminase,portal

attL 3372:3388|attR 87834:87850

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3372:3388	attL	NA	NA	NA	NA
WP_106905840.1\|9079_10428_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-74	52.4
WP_000097484.1\|10693_11506_-	propanediol utilization microcompartment protein PduB	NA	NA	NA	NA
WP_001183614.1\|11502_11787_-	propanediol utilization microcompartment protein PduA	NA	NA	NA	NA
WP_001000044.1\|12298_13108_+	propanediol diffusion facilitator PduF	A0A1J0F964	Only_Syngen_Nebraska_virus	2.0e-09	26.0
WP_000622043.1\|13310_14225_+	regulatory protein PocR	NA	NA	NA	NA
WP_000849050.1\|14709_15147_+	hypothetical protein	NA	NA	NA	NA
WP_000973152.1\|15280_15826_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_001297350.1\|15822_16566_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_106905841.1\|16577_17657_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_001544679.1\|17718_18654_+	L,D-transpeptidase	NA	NA	NA	NA
WP_001011472.1\|19110_20028_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_085458839.1\|20129_21080_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_137497613.1\|21197_22841_+	toxic metabolite efflux MATE transporter YeeO	NA	NA	NA	NA
WP_000532923.1\|23471_24188_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001060231.1\|24529_25984_-	AMP nucleosidase	NA	NA	NA	NA
WP_001600080.1\|26085_27402_-	shikimate transporter	NA	NA	NA	NA
WP_106905842.1\|27716_28769_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_158709024.1\|29030_37013_-	inverse autotransporter adhesin-like protein YeeJ	NA	NA	NA	NA
WP_001362605.1\|37502_38300_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000533619.1\|38535_39561_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_106905844.1\|39560_39764_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_106905845.1\|39822_42294_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	58.2
WP_033552884.1\|42414_42636_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	5.6e-31	82.2
WP_106905846.1\|42681_43533_-	transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	6.7e-64	64.4
WP_106905847.1\|43905_44325_+	hypothetical protein	NA	NA	NA	NA
WP_106905848.1\|44308_44524_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.7e-12	87.5
WP_106905849.1\|44525_44681_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.8e-07	53.2
WP_000379971.1\|44847_45255_-	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	2.6e-13	54.7
WP_021293151.1\|45338_45569_+	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000705377.1\|45552_46104_+	hypothetical protein	NA	NA	NA	NA
WP_158709025.1\|46075_47116_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	4.3e-89	85.6
WP_158709026.1\|47027_47570_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.7e-84	97.4
WP_106905851.1\|47604_48375_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	5.5e-89	69.9
WP_033552631.1\|48390_48825_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	5.2e-36	61.6
WP_106905852.1\|49103_49466_+	eae-like protein	A0A222YY85	Escherichia_phage	5.3e-26	61.3
WP_158709027.1\|49859_50258_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	2.2e-57	97.5
WP_106906900.1\|50355_50934_+	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	1.6e-69	86.0
WP_047087960.1\|51170_51383_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	1.6e-27	97.1
WP_106905854.1\|51645_51906_+	hypothetical protein	NA	NA	NA	NA
WP_106905856.1\|52247_53297_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.0e-113	57.6
WP_106905857.1\|53310_54132_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.4e-82	61.4
WP_106905858.1\|54376_55090_+	hypothetical protein	NA	NA	NA	NA
WP_106905859.1\|55451_56402_+	Shiga toxin Stx2 subunit A	Q6DWN9	Enterobacteria_phage	6.2e-151	88.9
WP_106905860.1\|56421_56685_+	Shiga toxin Stx2 subunit B	Q5TJL5	Enterobacteria_phage	3.2e-41	98.9
WP_106905861.1\|57173_59162_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	2.2e-190	56.0
WP_097749598.1\|59302_59488_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.2e-10	58.3
WP_106905862.1\|59510_59846_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_087906417.1\|59923_60139_+\|holin	holin	G9L6J5	Escherichia_phage	1.7e-32	97.2
WP_106905863.1\|60142_60772_+	hypothetical protein	Q08JA0	Stx2-converting_phage	1.4e-42	60.4
WP_106905864.1\|60814_61348_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	1.5e-93	91.5
WP_158709028.1\|61503_61686_+	hypothetical protein	NA	NA	NA	NA
WP_106905865.1\|61845_62304_+\|lysis	lysis protein	A0A2L1IV55	Escherichia_phage	8.9e-63	83.4
WP_000654790.1\|62720_63341_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	5.1e-53	53.7
WP_106905866.1\|63282_64350_-	hypothetical protein	NA	NA	NA	NA
WP_106905867.1\|64770_65280_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	2.7e-12	34.8
WP_106905868.1\|65251_67180_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.7e-259	65.7
WP_000259002.1\|67163_67370_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_106905869.1\|67366_68959_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.6e-183	60.7
WP_106905870.1\|68948_70454_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.6e-100	53.5
WP_106905871.1\|70490_70838_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.7e-21	57.0
WP_106905872.1\|70895_71924_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.0e-114	61.6
WP_059321412.1\|71976_72360_+	lipase chaperone	NA	NA	NA	NA
WP_106905873.1\|72352_72706_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.8e-39	66.7
WP_106905874.1\|72717_73296_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.0e-79	97.9
WP_106905875.1\|73292_73688_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	3.7e-57	79.4
WP_097447088.1\|73695_74454_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	1.6e-104	77.0
WP_106905876.1\|74472_74889_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	8.7e-25	51.1
WP_106905877.1\|74915_75305_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-40	79.8
WP_106905878.1\|75297_77862_+\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	80.3
WP_096932784.1\|77858_78188_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	1.7e-52	89.9
WP_106905879.1\|78187_78886_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	3.8e-121	91.4
WP_106906902.1\|78891_79635_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-140	91.1
WP_158709080.1\|79580_80177_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.7e-80	74.3
WP_106905882.1\|83819_84923_+\|tail	phage tail protein	Q9LA62	Enterobacterial_phage	1.5e-34	69.6
87834:87850	attR	NA	NA	NA	NA

DBSCAN-SWA_2

453813 : 521110

Enterobacteria_phage(46.81%)

protease,tail,lysis,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260850.1\|453813_454635_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|454734_454818_-	hypothetical protein	NA	NA	NA	NA
WP_106905954.1\|454910_455246_-	acid shock protein	NA	NA	NA	NA
WP_000091836.1\|455642_456896_-	MFS transporter	NA	NA	NA	NA
WP_089705857.1\|457002_457896_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024254027.1\|458030_459251_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|459375_460071_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_106906907.1\|460023_461316_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_059328078.1\|461473_462088_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.3e-28	35.8
WP_059328079.1\|462130_462985_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|462986_463604_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_074150141.1\|463614_466038_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-208	48.6
WP_001295396.1\|468722_469028_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001445899.1\|469135_469846_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138582.1\|469848_470409_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705207.1\|470443_470785_-	DUF1283 family protein	NA	NA	NA	NA
WP_001306081.1\|470919_471246_+	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
WP_001295394.1\|471451_472666_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_106905955.1\|472677_473697_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	5.7e-17	26.2
WP_001389342.1\|473754_473883_+	hypothetical protein	NA	NA	NA	NA
WP_158709030.1\|473884_475165_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	9.6e-155	62.1
WP_158709081.1\|475199_475436_-	DUF1233 family excisionase	S4TND0	Salmonella_phage	3.9e-14	49.3
WP_001583545.1\|475523_477995_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_106905958.1\|478088_478280_-\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000854559.1\|478276_478465_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001317493.1\|479951_480734_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
WP_021568046.1\|480955_481621_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000887491.1\|482179_482392_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_000980999.1\|482608_482860_+	hypothetical protein	NA	NA	NA	NA
WP_023147795.1\|482926_483205_+	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	48.4
WP_001265275.1\|483206_484256_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.5e-113	57.9
WP_106905960.1\|484269_485022_+	antitermination protein	K7PGU5	Enterobacteria_phage	4.2e-134	96.8
WP_000203370.1\|486182_486368_-	hypothetical protein	NA	NA	NA	NA
WP_120795389.1\|486993_487083_-	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000087756.1\|487137_487350_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066485.1\|487650_487866_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	7.7e-25	76.5
WP_000839590.1\|488619_488835_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000189916.1\|488839_489151_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_106905961.1\|489147_489681_+	lysozyme	K7PLY1	Enterobacteria_phage	5.5e-96	92.7
WP_001071769.1\|489677_490175_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_000066495.1\|490535_490748_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071524604.1\|490758_490947_+	cold-shock protein	NA	NA	NA	NA
WP_120795388.1\|490949_491015_+	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_001309517.1\|491094_491250_+	hypothetical protein	NA	NA	NA	NA
WP_001019140.1\|491421_491595_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000035577.1\|491746_492157_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
WP_001031431.1\|492457_492664_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
WP_000373425.1\|493218_493713_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_097521066.1\|493712_495815_+\|terminase	phage terminase large subunit family protein	K7PH40	Enterobacteria_phage	0.0e+00	99.6
WP_001072975.1\|495811_496024_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_158709031.1\|495951_497532_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	3.4e-287	99.4
WP_001360054.1\|497476_499504_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.7
WP_001097046.1\|499590_499914_+	DUF2190 family protein	A5LH31	Enterobacteria_phage	8.5e-52	100.0
WP_001283147.1\|499906_500182_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	1.1e-44	98.9
WP_000677102.1\|500193_500772_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.2e-101	99.5
WP_097510371.1\|500768_501170_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_106905962.1\|501180_501924_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	5.2e-129	96.8
WP_001341514.1\|501984_502371_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	5.2e-64	97.7
WP_106905963.1\|502379_502709_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	9.3e-54	98.2
WP_106905964.1\|502680_505746_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.6
WP_000447253.1\|505745_506075_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_061321215.1\|506084_506783_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.1e-133	98.7
WP_032157801.1\|506788_507532_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.3e-147	96.7
WP_000741589.1\|507429_508077_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.9e-111	97.2
WP_106905965.1\|508137_511533_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	89.9
WP_001230374.1\|511599_512199_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.2e-110	99.0
WP_106906908.1\|512263_515677_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.3e-12	36.4
WP_016233180.1\|515676_516252_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.2e-102	95.3
WP_000087133.1\|516349_516940_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.1e-24	35.9
WP_000836765.1\|517258_517492_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0
WP_120795384.1\|517560_517674_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_106905966.1\|518277_519561_+	MHS family MFS transporter	NA	NA	NA	NA
WP_096132897.1\|519649_521110_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	2.3e-43	29.9

DBSCAN-SWA_3

940742 : 953489

uncultured_Caudovirales_phage(42.86%)

integrase,capsid

attL 934383:934397|attR 954907:954921

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
934383:934397	attL	NA	NA	NA	NA
WP_106906054.1\|940742_941798_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.9e-68	42.8
WP_106906055.1\|941797_942004_-	hypothetical protein	NA	NA	NA	NA
WP_106906057.1\|942409_942682_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_106906058.1\|942692_943103_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_106906059.1\|943099_943342_-	hypothetical protein	NA	NA	NA	NA
WP_106906919.1\|943345_943669_-	hypothetical protein	NA	NA	NA	NA
WP_106906060.1\|943915_945325_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.3e-112	59.4
WP_106906061.1\|945321_945621_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_106906062.1\|945626_946109_-	hypothetical protein	NA	NA	NA	NA
WP_106906063.1\|946098_946716_-	host cell division inhibitor Icd-like protein	A0A0P0ZG86	Escherichia_phage	3.7e-11	75.5
WP_000094457.1\|946921_947119_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	9.5e-06	43.1
WP_106906064.1\|947176_947401_+	hypothetical protein	NA	NA	NA	NA
WP_000953271.1\|947665_947854_-	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_106906065.1\|948228_949458_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	7.1e-131	55.6
WP_000456506.1\|949706_950828_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000359446.1\|950876_952103_-	peptidase T	NA	NA	NA	NA
WP_033869694.1\|952352_953489_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
954907:954921	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1575861 : 1620075

Enterobacteria_phage(32.2%)

head,plate,protease,transposase,tail,holin,capsid,integrase,terminase,portal

attL 1578152:1578198|attR 1620089:1620135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255956.1\|1575861_1576884_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_001317493.1\|1576880_1577663_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
WP_106906192.1\|1577763_1578108_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
1578152:1578198	attL	NA	NA	NA	NA
WP_001201826.1\|1578620_1579574_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_106906193.1\|1579823_1580573_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_106906194.1\|1581118_1581262_-	hypothetical protein	K7PMH7	Enterobacteria_phage	2.7e-10	72.9
WP_106906195.1\|1581407_1581926_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	2.5e-37	55.9
WP_001519518.1\|1581925_1582528_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	4.3e-97	90.5
WP_023307735.1\|1582499_1582943_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	7.6e-59	73.5
WP_023307734.1\|1582944_1583583_-	hypothetical protein	U5P0I1	Shigella_phage	8.6e-64	68.0
WP_000383548.1\|1583586_1584171_-	YmfQ family protein	O22003	Shigella_phage	1.1e-113	100.0
WP_106906196.1\|1584161_1585220_-\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	1.2e-200	98.9
WP_042004576.1\|1585206_1585632_-\|tail	phage tail protein	U5P0R9	Shigella_phage	3.9e-81	99.3
WP_042106194.1\|1585631_1586180_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	8.7e-97	98.9
WP_000999527.1\|1586179_1587259_-\|plate	baseplate protein	U5P0H6	Shigella_phage	6.9e-207	99.7
WP_106906197.1\|1587255_1588632_-	DNA circularization protein	U5P4I0	Shigella_phage	2.2e-253	98.3
WP_106906198.1\|1588656_1590564_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	0.0e+00	99.1
WP_000571713.1\|1590648_1590972_-\|tail	phage tail assembly protein	U5P0R5	Shigella_phage	1.1e-51	99.1
WP_000090998.1\|1590968_1591325_-	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000155710.1\|1591324_1592821_-\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000497751.1\|1592804_1592975_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_106906199.1\|1592983_1593544_-	hypothetical protein	M1FQV7	Enterobacteria_phage	5.2e-105	99.5
WP_000224834.1\|1593540_1594047_-	hypothetical protein	M1FPE2	Enterobacteria_phage	6.6e-83	92.3
WP_000702389.1\|1594021_1594432_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	6.1e-71	94.9
WP_000927715.1\|1594428_1594752_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	3.3e-56	98.1
WP_000601363.1\|1594754_1594955_-	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
WP_000257506.1\|1595004_1596210_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	5.3e-224	99.8
WP_001193631.1\|1596224_1596875_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_097402963.1\|1596852_1598094_-\|portal	phage portal protein	U5P411	Shigella_phage	2.6e-242	99.5
WP_000605605.1\|1598093_1598276_-	hypothetical protein	S5FXQ9	Shigella_phage	3.8e-25	98.3
WP_143366865.1\|1598287_1599784_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	1.3e-299	99.6
WP_000929181.1\|1600017_1600512_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	8.6e-88	99.4
WP_106906201.1\|1600637_1600988_-	HNH endonuclease	Q8SBD7	Shigella_phage	1.0e-63	97.4
WP_109161702.1\|1601040_1601235_-	hypothetical protein	NA	NA	NA	NA
WP_001328141.1\|1601765_1602158_-	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	3.7e-57	91.5
WP_052930995.1\|1602141_1602618_-	glycoside hydrolase family 104 protein	K7P890	Enterobacteria_phage	2.5e-84	95.6
WP_129468645.1\|1602604_1602910_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.5e-42	90.7
WP_032172870.1\|1602951_1603425_-	hypothetical protein	NA	NA	NA	NA
WP_077861923.1\|1603908_1604598_-	antiterminator	I6PDF8	Cronobacter_phage	6.7e-54	47.2
WP_000971093.1\|1604594_1604735_-	YlcG family protein	K7PHH3	Enterobacteria_phage	7.7e-10	71.1
WP_072716668.1\|1604731_1605094_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	9.5e-60	94.9
WP_000774473.1\|1605090_1605381_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.1e-47	93.8
WP_000211034.1\|1605373_1605544_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053029.1\|1605543_1605999_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_072097297.1\|1605995_1606097_-	hypothetical protein	NA	NA	NA	NA
WP_001348590.1\|1606191_1606974_-	hypothetical protein	NA	NA	NA	NA
WP_000338660.1\|1607148_1607472_-	hypothetical protein	NA	NA	NA	NA
WP_106906202.1\|1607583_1609110_-	recombinase family protein	Q3HQV4	Burkholderia_phage	3.6e-31	32.6
WP_001299444.1\|1609167_1609317_-	hypothetical protein	NA	NA	NA	NA
WP_001070442.1\|1609364_1609697_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145915.1\|1609764_1610067_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_000788793.1\|1610063_1610765_-	Replication protein 14	M1FJ72	Enterobacteria_phage	2.7e-127	97.4
WP_001435464.1\|1610761_1611691_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182886.1\|1611777_1612317_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.2e-61	66.7
WP_001067458.1\|1612386_1612617_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_042107501.1\|1612721_1613411_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.6e-92	75.0
WP_000380252.1\|1613491_1614553_+	hypothetical protein	Q6SE88	Lactobacillus_prophage	2.9e-64	42.0
WP_000866321.1\|1614530_1614908_+	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.3e-30	49.2
WP_000233576.1\|1615388_1615595_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995433.1\|1615670_1615967_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000100847.1\|1615972_1616758_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_106906203.1\|1616754_1617435_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.9e-131	98.7
WP_106906204.1\|1617431_1617614_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	2.6e-26	95.0
WP_000548537.1\|1617586_1617778_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_001443983.1\|1617788_1618070_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763385.1\|1618168_1618387_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_000488407.1\|1618434_1618713_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_106906205.1\|1618684_1619056_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.3e-45	80.2
WP_000051902.1\|1618911_1620075_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
1620089:1620135	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2292828 : 2333813

Escherichia_phage(28.57%)

transposase,holin,integrase,lysis,terminase

attL 2286073:2286088|attR 2341107:2341122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2286073:2286088	attL	NA	NA	NA	NA
WP_000490275.1\|2292828_2292990_-	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001295748.1\|2293116_2293722_-	molecular chaperone OsmY	NA	NA	NA	NA
WP_000202563.1\|2294114_2295701_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_061356802.1\|2295920_2296169_+	DinI family protein	A5LH55	Enterobacteria_phage	2.7e-37	96.3
WP_106906338.1\|2297172_2297949_+	toxin	G1BEM3	Escherichia_phage	9.0e-116	87.2
WP_106906339.1\|2297945_2298755_+	cytolethal distending toxin type III/V nuclease subunit CdtB	G1BEM4	Escherichia_phage	3.3e-145	95.5
WP_106906340.1\|2298769_2299315_+	toxin	M1SNM4	Escherichia_phage	9.8e-93	91.7
WP_106906341.1\|2299551_2302308_-	hypothetical protein	A0A286S259	Klebsiella_phage	9.4e-83	36.1
WP_158709052.1\|2302310_2302685_-	nitrite transporter	NA	NA	NA	NA
WP_106906343.1\|2302775_2303989_-\|transposase	IS3-like element ISEc31 family transposase	Q716C2	Shigella_phage	2.6e-101	57.8
WP_106906344.1\|2304758_2305337_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	3.3e-62	75.9
WP_033552926.1\|2305620_2305986_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.0e-53	86.0
WP_106906347.1\|2307197_2307815_-	hypothetical protein	A0A1R3Y613	Salmonella_virus	5.0e-93	85.4
WP_097447265.1\|2307964_2308423_-\|lysis	lysis protein	A0A2L1IV55	Escherichia_phage	4.1e-60	81.5
WP_106906348.1\|2308721_2309255_-	lysozyme	Q6H9V6	Enterobacteria_phage	2.8e-100	96.6
WP_087906417.1\|2309929_2310145_-\|holin	holin	G9L6J5	Escherichia_phage	1.7e-32	97.2
WP_106906349.1\|2310222_2310639_-	DUF826 domain-containing protein	A0A0H4IT07	Shigella_phage	3.7e-07	55.9
WP_106906350.1\|2310565_2310748_-	DUF1378 family protein	Q5MBW3	Stx1-converting_phage	1.5e-13	64.4
WP_072017355.1\|2313233_2313557_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	4.2e-35	62.4
WP_001317493.1\|2315219_2316002_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
WP_106906353.1\|2318665_2319418_-	antitermination protein	K7PGU5	Enterobacteria_phage	3.1e-137	99.2
WP_106906354.1\|2319431_2320421_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-193	99.1
WP_001072669.1\|2320428_2321244_-	KilA-N domain-containing protein	U5P4K5	Shigella_phage	8.5e-149	99.3
WP_106906355.1\|2321406_2321802_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	9.7e-66	97.6
WP_158709053.1\|2321798_2322125_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_106906357.1\|2322124_2322613_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.7e-80	95.1
WP_106906358.1\|2322609_2323428_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	2.8e-123	99.6
WP_001447116.1\|2323424_2323649_-	hypothetical protein	A0A291AX25	Escherichia_phage	5.9e-36	95.9
WP_106906359.1\|2323653_2324490_-	ash family protein	Q8SBF3	Shigella_phage	6.7e-149	98.6
WP_106906360.1\|2324486_2325038_-	hypothetical protein	Q8SBF4	Shigella_phage	1.2e-98	98.4
WP_106906361.1\|2325060_2325309_-	cytoplasmic chaperone TorD	NA	NA	NA	NA
WP_106906362.1\|2325444_2326131_+	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.7e-39	42.0
WP_000500990.1\|2327237_2327750_-	hypothetical protein	NA	NA	NA	NA
WP_024226706.1\|2328218_2328581_+	hypothetical protein	U5P4J6	Shigella_phage	1.3e-56	94.2
WP_000081287.1\|2328646_2329471_+	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000008189.1\|2329598_2330135_+	5'-deoxynucleotidase	A0A0P0ZCH9	Stx2-converting_phage	4.8e-100	98.9
WP_001242716.1\|2330125_2330488_+	hypothetical protein	K7PH61	Enterobacteria_phage	5.8e-65	98.3
WP_097450731.1\|2330487_2331108_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	3.2e-116	93.2
WP_089633610.1\|2331584_2332304_-	hypothetical protein	NA	NA	NA	NA
WP_106906364.1\|2332589_2333813_-\|integrase	site-specific integrase	A5LH57	Enterobacteria_phage	1.2e-234	98.0
2341107:2341122	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4139059 : 4146199

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278992.1\|4139059_4139698_-	aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
WP_064225921.1\|4139694_4140957_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.2
WP_000847985.1\|4140953_4141862_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_106906674.1\|4142057_4142825_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
WP_106906675.1\|4142875_4143532_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.6e-49	46.7
WP_001272887.1\|4143637_4146199_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	4.6e-31	20.7

DBSCAN-SWA_7

4239259 : 4331848

Escherichia_phage(36.54%)

tRNA,protease,tail,holin,integrase,terminase,portal

attL 4236428:4236446|attR 4345766:4345784

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4236428:4236446	attL	NA	NA	NA	NA
WP_000264776.1\|4239259_4240027_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065253.1\|4240068_4240416_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_054496130.1\|4240490_4240973_-	OmpA family protein	NA	NA	NA	NA
WP_089706597.1\|4240988_4242215_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_001212391.1\|4242204_4242723_-	YfiR family protein	NA	NA	NA	NA
WP_001314943.1\|4242872_4243238_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001168045.1\|4243446_4244517_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000225210.1\|4244527_4245649_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_064226296.1\|4245691_4246852_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_001386991.1\|4246950_4246998_-	hypothetical protein	NA	NA	NA	NA
WP_097749545.1\|4247163_4248153_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	9.5e-102	55.9
WP_097749566.1\|4248243_4248552_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.8e-20	55.1
WP_097749546.1\|4248668_4249127_+	transcriptional regulator	NA	NA	NA	NA
WP_106906694.1\|4249299_4249485_+	hypothetical protein	NA	NA	NA	NA
WP_158709068.1\|4249539_4250124_+	hypothetical protein	NA	NA	NA	NA
WP_157924812.1\|4250281_4250437_+	hypothetical protein	NA	NA	NA	NA
WP_106906695.1\|4250448_4251024_+	3'-5' exoribonuclease	NA	NA	NA	NA
WP_097749551.1\|4251025_4251244_+	hypothetical protein	NA	NA	NA	NA
WP_106906696.1\|4251240_4253283_+	exodeoxyribonuclease VIII	V5UQJ3	Shigella_phage	1.9e-51	33.4
WP_097749553.1\|4253275_4253497_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_106906697.1\|4253480_4254284_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.1e-51	47.2
WP_106906698.1\|4254299_4254722_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	90.6
WP_106906699.1\|4254779_4255136_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.3e-57	96.6
WP_086522857.1\|4255187_4255400_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	7.6e-33	90.0
WP_106906700.1\|4255435_4256065_+	hypothetical protein	A0A0N7KZV3	Escherichia_phage	4.1e-18	76.8
WP_106906701.1\|4256149_4256401_+	DUF4222 domain-containing protein	G9L6F5	Escherichia_phage	8.4e-15	48.1
WP_158709069.1\|4256583_4257207_+	hypothetical protein	NA	NA	NA	NA
WP_106906702.1\|4257203_4259126_+	replication endonuclease	F1BUS0	Erwinia_phage	4.1e-109	36.9
WP_097749561.1\|4259277_4259523_+	hypothetical protein	Q8W639	Enterobacteria_phage	2.1e-10	38.2
WP_106906703.1\|4259533_4260613_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-60	39.1
WP_106906704.1\|4260614_4261319_+	hypothetical protein	NA	NA	NA	NA
WP_106906705.1\|4261513_4261711_+	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	3.4e-27	96.9
WP_106906706.1\|4261862_4262930_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.6e-187	88.8
WP_106906707.1\|4265125_4266349_+	hypothetical protein	S5MDQ7	Escherichia_phage	1.3e-76	40.6
WP_106906708.1\|4266481_4266667_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.1e-11	60.0
WP_106906709.1\|4266689_4267025_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_087906417.1\|4267102_4267318_+\|holin	holin	G9L6J5	Escherichia_phage	1.7e-32	97.2
WP_106906710.1\|4267995_4268529_+	lysozyme	Q6H9V6	Enterobacteria_phage	8.7e-94	91.5
WP_033553196.1\|4268749_4268863_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	8.7e-12	97.3
WP_158709070.1\|4269084_4269270_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.3e-17	78.7
WP_106906712.1\|4269970_4270447_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	8.3e-80	95.6
WP_106906713.1\|4270443_4272567_+\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	0.0e+00	96.7
WP_122998037.1\|4272563_4272776_+	hypothetical protein	S5MBY8	Escherichia_phage	7.6e-25	82.9
WP_106906714.1\|4272775_4274278_+\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	2.9e-272	92.8
WP_158709087.1\|4274267_4276238_+\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	0.0e+00	93.8
WP_106906715.1\|4276325_4276652_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	2.5e-43	88.8
WP_097447091.1\|4276644_4276926_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	6.7e-37	82.8
WP_097447090.1\|4276928_4277552_+\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	7.1e-95	91.3
WP_106906716.1\|4277563_4277962_+\|tail	phage tail protein	S5MW30	Escherichia_phage	8.3e-65	90.2
WP_097447088.1\|4277969_4278728_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	1.6e-104	77.0
WP_106906717.1\|4278746_4279163_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	5.7e-24	50.4
WP_106906718.1\|4279189_4279471_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	5.1e-37	78.3
WP_106906719.1\|4279460_4282058_+\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	83.7
WP_106906720.1\|4282054_4282384_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	7.8e-53	90.8
WP_106906721.1\|4282383_4283082_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	6.4e-121	91.4
WP_106906957.1\|4283087_4283831_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	7.0e-142	93.1
WP_158709088.1\|4283776_4284373_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.1e-81	72.9
WP_106906724.1\|4288001_4288601_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	8.9e-95	87.4
WP_106906725.1\|4288665_4289859_+\|tail	phage tail protein	Q9LA62	Enterobacterial_phage	9.2e-35	68.8
WP_106906726.1\|4289869_4290475_+	DUF4376 domain-containing protein	A0A2L1IV45	Escherichia_phage	3.5e-38	44.7
WP_097749596.1\|4290721_4290910_+	hypothetical protein	NA	NA	NA	NA
WP_097749594.1\|4291135_4291276_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.2e-16	89.1
WP_106906727.1\|4291417_4291714_+	zinc-ribbon domain and TM2 domain-containing protein	M4ZS56	Bacillus_phage	2.1e-17	71.9
WP_000178456.1\|4291960_4292302_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197686.1\|4292572_4293310_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079112.1\|4293444_4294425_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000040140.1\|4294421_4295153_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235102.1\|4295282_4297856_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000841106.1\|4303631_4304930_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	2.8e-45	31.7
WP_001221086.1\|4304926_4305250_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949265.1\|4305295_4306651_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_089558813.1\|4306764_4309425_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_001308860.1\|4309456_4310155_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098726.1\|4310223_4310643_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_000997382.1\|4310849_4311887_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001262720.1\|4311934_4312624_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	3.5e-55	52.1
WP_000627804.1\|4312927_4313311_+	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_106906728.1\|4313365_4313953_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_001521087.1\|4314055_4314937_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219193.1\|4314969_4316304_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_001295363.1\|4316435_4317173_+\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
WP_106906729.1\|4317157_4318780_-	L-aspartate oxidase	NA	NA	NA	NA
WP_001303621.1\|4319035_4319191_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001295364.1\|4319187_4319763_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168459.1\|4319795_4320446_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_029403571.1\|4320445_4321402_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_106906730.1\|4321398_4321878_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000790168.1\|4322075_4323875_+	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000002542.1\|4323890_4324865_+	signal peptidase I	NA	NA	NA	NA
WP_001068343.1\|4325137_4325818_+	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_106906731.1\|4325814_4326720_+	GTPase Era	NA	NA	NA	NA
WP_000399393.1\|4326731_4327460_+	DNA repair protein RecO	NA	NA	NA	NA
WP_001309669.1\|4327471_4328203_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000986029.1\|4328202_4328583_+	holo-ACP synthase	NA	NA	NA	NA
WP_000128776.1\|4329004_4329085_+	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_001196285.1\|4329278_4329539_-	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	8.4e-18	52.3
WP_001296301.1\|4329594_4330443_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001590519.1\|4330651_4331287_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001295367.1\|4331311_4331848_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
4345766:4345784	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4849451 : 4859046

Enterobacteria_phage(71.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001240399.1\|4849451_4850183_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001295431.1\|4850404_4852090_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|4852086_4852806_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|4852852_4853323_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_047669483.1\|4853363_4853825_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-75	99.3
WP_001317493.1\|4854344_4855127_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
WP_000255956.1\|4855123_4856146_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_106906857.1\|4857909_4859046_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP027439

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4936

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907053.1\|2031_2925_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_106907055.1\|3067_3838_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_106907163.1\|3880_4936_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	9.5e-84	45.9

DBSCAN-SWA_2

9823 : 29139

Trichoplusia_ni_ascovirus(10.0%)

integrase,transposase

attL 10593:10606|attR 24604:24617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907061.1\|9823_10600_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.8e-14	31.5
10593:10606	attL	NA	NA	NA	NA
WP_106907063.1\|10630_10924_-	Dabb family protein	NA	NA	NA	NA
WP_106907065.1\|10935_11997_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	6.4e-72	41.5
WP_106907067.1\|12145_13105_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000344277.1\|13740_14070_+	hypothetical protein	NA	NA	NA	NA
WP_106907069.1\|14617_15830_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.9e-100	57.1
WP_000429590.1\|16086_16521_+	hypothetical protein	NA	NA	NA	NA
WP_001418814.1\|16517_17300_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.3
WP_078405668.1\|18129_18441_+	hypothetical protein	NA	NA	NA	NA
WP_000171282.1\|18601_19003_+	hypothetical protein	NA	NA	NA	NA
WP_106907072.1\|19645_19903_+	hypothetical protein	NA	NA	NA	NA
WP_000616196.1\|19998_20445_-	hypothetical protein	A0A222YWI5	Escherichia_phage	1.8e-28	55.3
WP_106907074.1\|20562_21042_+	peptidase M14	NA	NA	NA	NA
WP_077631139.1\|21293_21491_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000222786.1\|21653_21941_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.4e-20	49.5
WP_001120171.1\|21937_22189_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_106907077.1\|22412_22952_+	type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA	NA	NA	NA
WP_000172786.1\|23337_24204_+	ParA family protein	NA	NA	NA	NA
WP_106907079.1\|24203_25235_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	4.9e-08	25.7
24604:24617	attR	NA	NA	NA	NA
WP_000843285.1\|25234_25672_+	hypothetical protein	NA	NA	NA	NA
WP_153645668.1\|25668_25992_+	hypothetical protein	NA	NA	NA	NA
WP_106907081.1\|26074_27349_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.7e-156	64.8
WP_047089913.1\|27348_27771_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.4e-30	53.2
WP_000066222.1\|28251_29139_+	RepB family plasmid replication initiator protein	A0A1B0VDL5	Salmonella_phage	1.8e-64	45.5

DBSCAN-SWA_3

33315 : 41364

Thalassomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001346267.1\|33315_33879_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	8.0e-21	37.3
WP_106907088.1\|34728_35262_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-45	73.9
WP_021564200.1\|35324_35558_+	DUF905 family protein	NA	NA	NA	NA
WP_106907090.1\|35621_37580_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.3e-21	27.4
WP_000845926.1\|37634_38069_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_106907092.1\|38065_38785_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001312861.1\|39064_39223_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_101357018.1\|39655_39844_-	hypothetical protein	NA	NA	NA	NA
WP_024173136.1\|39844_40081_-	hypothetical protein	NA	NA	NA	NA
WP_000107538.1\|40137_40425_+	hypothetical protein	NA	NA	NA	NA
WP_158709101.1\|40542_41364_+	DUF932 domain-containing protein	A0A2C9CYF8	Yersinia_phage	9.8e-44	37.8

DBSCAN-SWA_4

49515 : 49737

Vibrio_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907100.1\|49515_49737_+	conjugal transfer protein TraR	A2I309	Vibrio_virus	7.4e-07	40.8

DBSCAN-SWA_5

73859 : 76276

Xanthomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050947963.1\|73859_74606_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	1.4e-09	31.5
WP_033803061.1\|74660_75221_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001299730.1\|75356_75569_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_106907127.1\|75814_76276_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	1.6e-19	38.1

DBSCAN-SWA_6

94280 : 95148

Enterobacterial_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907145.1\|94280_94616_+	hypothetical protein	Q9LA58	Enterobacterial_phage	2.3e-23	54.5
WP_106907147.1\|94704_95148_+	hypothetical protein	Q9LA58	Enterobacterial_phage	1.2e-19	40.8

DBSCAN-SWA_7

102859 : 104435

Acanthamoeba_polyphaga_moumouvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907157.1\|102859_103909_+	NAD(P)-dependent alcohol dehydrogenase	L7RC95	Acanthamoeba_polyphaga_moumouvirus	2.7e-78	42.6
WP_106907159.1\|104180_104435_+	DUF1471 domain-containing protein	A0A1B2IE60	Erwinia_phage	1.3e-07	59.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027437

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP027439

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection