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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP027599 Escherichia coli strain 97-3250 chromosome, complete genome 7 crisprs cas3,csa3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol 0 13 23 0
NZ_CP027600 Escherichia coli strain 97-3250 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP027601 Escherichia coli strain 97-3250 plasmid unnamed2 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP027599
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_1 685911-686028 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_2 1133172-1133749 Unclear I-E
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_3 1159449-1159965 TypeI-E I-E
8 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_4 2740105-2740228 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_5 3751279-3751370 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_6 4179997-4180141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027599_7 5034339-5034471 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP027599_5 5.1|3751305|40|NZ_CP027599|CRISPRCasFinder 3751305-3751344 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP027599_7 7.1|5034356|42|NZ_CP027599|PILER-CR 5034356-5034397 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP027599_4 4.1|2740148|38|NZ_CP027599|CRISPRCasFinder 2740148-2740185 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP027599_7 7.2|5034415|40|NZ_CP027599|PILER-CR 5034415-5034454 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 2 0.95
NZ_CP027599_3 3.8|1159905|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159905-1159936 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP027599_2 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT 1133689-1133720 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NC_012852 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence 256608-256639 8 0.75
NZ_CP027599_2 2.8|1133628|32|NZ_CP027599|CRISPRCasFinder,CRT 1133628-1133659 32 MK814759 Gordonia phage Reyja, complete genome 4467-4498 8 0.75
NZ_CP027599_2 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT 1133689-1133720 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
NZ_CP027599_3 3.4|1159661|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159661-1159692 32 NZ_CP030355 Novosphingobium sp. P6W plasmid pP6W2, complete sequence 141173-141204 8 0.75
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP050094 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence 196778-196809 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP050101 Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence 151768-151799 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 508685-508716 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP025016 Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence 133778-133809 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NC_008379 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence 180274-180305 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP053442 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence 151061-151092 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP018233 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence 21422-21453 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 499023-499054 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP016293 Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence 106143-106174 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 508869-508900 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP048283 Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence 130036-130067 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 172635-172666 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 387130-387161 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP022569 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence 4795-4826 9 0.719
NZ_CP027599_2 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT 1133201-1133232 32 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 158950-158981 9 0.719
NZ_CP027599_2 2.6|1133506|32|NZ_CP027599|CRISPRCasFinder,CRT 1133506-1133537 32 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224876-224907 9 0.719
NZ_CP027599_2 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT 1133689-1133720 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
NZ_CP027599_3 3.3|1159600|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159600-1159631 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 292180-292211 9 0.719
NZ_CP027599_3 3.3|1159600|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159600-1159631 32 NZ_CP020740 [Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence 20747-20778 9 0.719
NZ_CP027599_3 3.6|1159783|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159783-1159814 32 LT599585 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid 32377-32408 9 0.719
NZ_CP027599_2 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT 1133689-1133720 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
NZ_CP027599_3 3.2|1159539|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159539-1159570 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 903982-904013 10 0.688
NZ_CP027599_3 3.4|1159661|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159661-1159692 32 MF417892 Uncultured Caudovirales phage clone 2F_2, partial genome 39822-39853 10 0.688
NZ_CP027599_3 3.2|1159539|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT 1159539-1159570 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1467285-1467316 11 0.656

1. spacer 5.1|3751305|40|NZ_CP027599|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 7.1|5034356|42|NZ_CP027599|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 4.1|2740148|38|NZ_CP027599|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 7.2|5034415|40|NZ_CP027599|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catcgcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
*** ****** *****************************

5. spacer 3.8|1159905|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

6. spacer 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

7. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.75

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcacc	Protospacer
**...*********** *** *******.* .

8. spacer 2.8|1133628|32|NZ_CP027599|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **  

9. spacer 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

10. spacer 3.4|1159661|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
aattcacgatcatctttgattatccgcgaaga	Protospacer
.*  *  .****** *******.*********

11. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

12. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

13. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

14. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

15. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

16. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

17. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

18. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

19. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

20. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

21. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

22. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

23. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

24. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

25. spacer 2.1|1133201|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

26. spacer 2.6|1133506|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taaggccgtcgccggatcagcctggctatgcc	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgc	Protospacer
...******************* * **..  *

27. spacer 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*  

28. spacer 3.3|1159600|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaaaaacgccgtgatattgccgat	Protospacer
 **. **** *.****************   .

29. spacer 3.3|1159600|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaagaacgccgtgatgttgccggt	Protospacer
 **. **** *************.****   .

30. spacer 3.6|1159783|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

atcaggtaatcgagacacctgtcagcactctc	CRISPR spacer
ccaaggtaatcgagagacctgccagcaaagcc	Protospacer
 . ************ *****.*****   .*

31. spacer 2.9|1133689|32|NZ_CP027599|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

32. spacer 3.2|1159539|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
gcgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
*. **** ***************.**..   .

33. spacer 3.4|1159661|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to MF417892 (Uncultured Caudovirales phage clone 2F_2, partial genome) position: , mismatch: 10, identity: 0.688

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
tgggctgcatcatcattgattacctgcaactg	Protospacer
 ...*** ****************.**.*  .

34. spacer 3.2|1159539|32|NZ_CP027599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
ccgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
 . **** ***************.**..   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 815172 : 901360 100 Shigella_phage(51.16%) tail,integrase,tRNA,transposase,protease,plate,head attL 818337:818353|attR 887317:887333
DBSCAN-SWA_2 1017362 : 1024269 6 Stx2-converting_phage(50.0%) integrase,transposase attL 1017212:1017228|attR 1026297:1026313
DBSCAN-SWA_3 1176320 : 1183460 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_4 1256240 : 1361194 103 Stx2-converting_phage(31.82%) tail,integrase,holin,tRNA,terminase,capsid,head attL 1257986:1258000|attR 1270343:1270357
DBSCAN-SWA_5 1375363 : 1412676 48 Salmonella_phage(52.27%) tail,terminase,holin NA
DBSCAN-SWA_6 1469262 : 1537830 80 Escherichia_phage(42.03%) tail,integrase,holin,tRNA,terminase attL 1520466:1520482|attR 1535207:1535223
DBSCAN-SWA_7 1549368 : 1559661 12 Escherichia_phage(50.0%) tail,holin NA
DBSCAN-SWA_8 1720982 : 1838985 140 Escherichia_phage(42.75%) tail,integrase,holin,transposase,lysis,terminase,bacteriocin,portal,capsid,head attL 1775564:1775587|attR 1837954:1837977
DBSCAN-SWA_9 1939973 : 2036820 99 Enterobacteria_phage(37.5%) tail,integrase,holin,transposase,protease,lysis,terminase,portal,head attL 1948964:1948982|attR 2024452:2024470
DBSCAN-SWA_10 2132514 : 2142442 9 Enterobacteria_phage(62.5%) transposase NA
DBSCAN-SWA_11 2233864 : 2240166 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_12 2273802 : 2279120 9 Stx2-converting_phage(50.0%) transposase NA
DBSCAN-SWA_13 2398842 : 2435004 46 Enterobacteria_phage(87.18%) tail,integrase,holin,plate,terminase,portal,capsid,head attL 2397780:2397839|attR 2435111:2435231
DBSCAN-SWA_14 2522446 : 2601844 89 Escherichia_phage(34.48%) tail,holin,tRNA,transposase,protease,lysis,portal,head NA
DBSCAN-SWA_15 2813624 : 2913510 108 Stx2-converting_phage(31.88%) tail,integrase,holin,transposase,protease,lysis,terminase,portal,capsid,head attL 2807538:2807556|attR 2912710:2912728
DBSCAN-SWA_16 2990053 : 3046110 68 Escherichia_phage(42.42%) tail,integrase,holin,tRNA,transposase,lysis,portal,capsid,head attL 2990173:2990187|attR 3012448:3012462
DBSCAN-SWA_17 3191359 : 3424570 284 Escherichia_phage(31.35%) tail,integrase,holin,transposase,protease,lysis,terminase,plate,portal,capsid,head attL 3193769:3193785|attR 3425407:3425423
DBSCAN-SWA_18 3718726 : 3901758 211 Enterobacteria_phage(32.86%) tail,integrase,holin,transposase,protease,terminase,portal,capsid,head attL 3852479:3852538|attR 3900833:3900897
DBSCAN-SWA_19 4097765 : 4178513 99 Enterobacteria_phage(47.06%) tail,integrase,holin,transposase,protease,lysis,terminase,portal,head attL 4098891:4098925|attR 4179947:4179981
DBSCAN-SWA_20 4398144 : 4456650 71 Enterobacteria_phage(59.65%) tail,integrase,transposase,protease,lysis,terminase,portal,capsid,head attL 4406625:4406671|attR 4456664:4456710
DBSCAN-SWA_21 4740805 : 4757200 18 Sodalis_phage(15.38%) integrase,transposase attL 4734695:4734708|attR 4756334:4756347
DBSCAN-SWA_22 5207756 : 5271274 60 Stx2-converting_phage(46.15%) tRNA,integrase,transposase attL 5230316:5230331|attR 5262456:5262471
DBSCAN-SWA_23 5330588 : 5388883 57 Vibrio_phage(15.38%) protease,transposase,integrase,tRNA attL 5356091:5356105|attR 5388152:5388166
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP027600
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 58629 : 96160 34 Escherichia_phage(30.0%) integrase,transposase attL 81647:81676|attR 100881:100910
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP027601
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2867 : 67167 56 Stx2-converting_phage(45.83%) protease,integrase,transposase attL 38727:38786|attR 67713:69544
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage