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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP027573 Escherichia coli strain 2013C-4081 chromosome, complete genome 7 crisprs c2c9_V-U4,DEDDh,cas3,PrimPol,DinG,cas14i,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2 0 8 18 0
NZ_CP027575 Escherichia coli strain 2013C-4081 plasmid unnamed2 0 crisprs NA 0 0 1 0
NZ_CP027576 Escherichia coli strain 2013C-4081 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP027574 Escherichia coli strain 2013C-4081 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP027573
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_1 302294-302417 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_2 1211332-1211423 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_3 1538915-1539059 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_4 2350687-2350819 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_5 3858629-3858746 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_6 4318928-4319322 Unclear I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027573_7 4345024-4345296 TypeI-E I-E
4 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP027573_2 2.1|1211358|40|NZ_CP027573|CRISPRCasFinder 1211358-1211397 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP027573_4 4.1|2350704|42|NZ_CP027573|PILER-CR 2350704-2350745 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP027573_1 1.1|302337|38|NZ_CP027573|CRISPRCasFinder 302337-302374 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP027573_4 4.2|2350763|40|NZ_CP027573|PILER-CR 2350763-2350802 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 2 0.95
NZ_CP027573_7 7.4|4345236|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT 4345236-4345267 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP027573_6 6.6|4319262|32|NZ_CP027573|CRISPRCasFinder,CRT 4319262-4319293 32 MK814759 Gordonia phage Reyja, complete genome 4467-4498 8 0.75
NZ_CP027573_7 7.2|4345114|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT 4345114-4345145 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 292180-292211 9 0.719
NZ_CP027573_7 7.2|4345114|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT 4345114-4345145 32 NZ_CP020740 [Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence 20747-20778 9 0.719
NZ_CP027573_7 7.3|4345175|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT 4345175-4345206 32 LT599585 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid 32377-32408 9 0.719

1. spacer 2.1|1211358|40|NZ_CP027573|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 4.1|2350704|42|NZ_CP027573|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 1.1|302337|38|NZ_CP027573|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 4.2|2350763|40|NZ_CP027573|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catcgcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
*** ****** *****************************

5. spacer 7.4|4345236|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

6. spacer 6.6|4319262|32|NZ_CP027573|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **  

7. spacer 7.2|4345114|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaaaaacgccgtgatattgccgat	Protospacer
 **. **** *.****************   .

8. spacer 7.2|4345114|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaagaacgccgtgatgttgccggt	Protospacer
 **. **** *************.****   .

9. spacer 7.3|4345175|32|NZ_CP027573|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

atcaggtaatcgagacacctgtcagcactctc	CRISPR spacer
ccaaggtaatcgagagacctgccagcaaagcc	Protospacer
 . ************ *****.*****   .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 214326 : 252410 45 Enterobacteria_phage(86.11%) terminase,head,tail,plate,capsid,transposase,portal,holin,tRNA NA
DBSCAN-SWA_2 375892 : 477988 114 Stx2-converting_phage(27.54%) terminase,protease,head,tail,integrase,capsid,lysis,transposase,portal,holin attL 400987:401016|attR 458009:458038
DBSCAN-SWA_3 617211 : 736397 118 Escherichia_phage(40.28%) terminase,head,tail,capsid,transposase,holin,tRNA NA
DBSCAN-SWA_4 796781 : 867906 75 Enterobacteria_phage(45.83%) terminase,protease,holin,tail,transposase,portal NA
DBSCAN-SWA_5 969122 : 1032444 65 Stx2-converting_phage(35.56%) terminase,head,tail,integrase,capsid,transposase,holin,tRNA attL 977413:977427|attR 1032546:1032560
DBSCAN-SWA_6 1124298 : 1180315 52 Escherichia_phage(33.33%) transposase,protease NA
DBSCAN-SWA_7 1242360 : 1273382 42 Escherichia_phage(44.0%) transposase,protease,holin NA
DBSCAN-SWA_8 1503361 : 1537431 42 Enterobacteria_phage(56.76%) head,tail,integrase,capsid,transposase,holin attL 1511032:1511048|attR 1542823:1542839
DBSCAN-SWA_9 1756868 : 1836675 69 Escherichia_phage(31.82%) protease,head,tail,capsid,transposase,tRNA NA
DBSCAN-SWA_10 2021359 : 2068546 43 Escherichia_phage(25.0%) transposase,holin,integrase attL 2043586:2043602|attR 2065992:2066008
DBSCAN-SWA_11 2583870 : 2647729 60 Morganella_phage(12.5%) transposase,protease,integrase,tRNA attL 2580475:2580504|attR 2605966:2605995
DBSCAN-SWA_12 2762365 : 2807278 48 Enterobacteria_phage(34.09%) terminase,head,tail,capsid,holin,tRNA NA
DBSCAN-SWA_13 4069837 : 4125847 49 Escherichia_phage(33.33%) transposase,protease,integrase,tRNA attL 4072926:4072941|attR 4090967:4090982
DBSCAN-SWA_14 4361645 : 4368785 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_15 4442033 : 4526909 88 Enterobacteria_phage(75.0%) terminase,protease,tail,transposase,portal,tRNA NA
DBSCAN-SWA_16 4756595 : 4816342 76 Escherichia_phage(77.33%) terminase,bacteriocin,holin,tail,integrase,capsid,portal attL 4756377:4756401|attR 4815311:4815335
DBSCAN-SWA_17 4917337 : 4978901 47 Enterobacteria_phage(20.0%) protease,integrase,lysis,transposase,holin attL 4934587:4934622|attR 4966467:4966502
DBSCAN-SWA_18 5198893 : 5369200 218 Enterobacteria_phage(31.71%) terminase,protease,head,tail,coat,integrase,plate,capsid,lysis,transposase,portal,holin attL 5201164:5201223|attR 5344460:5345769
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP027575
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 94 : 95095 99 Escherichia_phage(65.26%) plate,tail,integrase,terminase attL 41316:41332|attR 87433:87449
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP027576
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6877 : 63920 42 Stx2-converting_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage