CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027460	Escherichia coli strain 90-3040 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	5	0
NZ_CP027459	Escherichia coli strain 90-3040 chromosome, complete genome	10 crisprs	cas3,DEDDh,DinG,c2c9_V-U4,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	0	6	17	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10175

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001132895.1\|143_395_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_032208250.1\|568_754_-	hypothetical protein	NA	NA	NA	NA
WP_000091308.1\|2095_2461_-	hypothetical protein	NA	NA	NA	NA
WP_000592771.1\|2974_5185_+	catalase/peroxidase KatP	NA	NA	NA	NA
WP_047088106.1\|5228_5618_+	cytochrome b562 family protein	NA	NA	NA	NA
WP_000445934.1\|6578_6974_-	plasmid stabilization protein	NA	NA	NA	NA
WP_032208244.1\|6973_7933_-	plasmid stabilization protein	A0A222YXF2	Escherichia_phage	6.0e-61	40.6
WP_077790945.1\|8205_9108_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000086163.1\|9491_10175_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4

DBSCAN-SWA_2

20018 : 21174

Acinetobacter_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106888247.1\|20018_21174_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-68	45.1

DBSCAN-SWA_3

24271 : 27651

Xanthomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000205763.1\|24271_25018_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	7.6e-11	30.8
WP_047088282.1\|25076_25937_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	1.8e-11	23.0
WP_047088283.1\|26039_26600_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001302189.1\|26732_26945_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_047088284.1\|27189_27651_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	6.7e-18	35.8

DBSCAN-SWA_4

33695 : 39892

Acinetobacter_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106888248.1\|33695_34851_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_077744811.1\|34757_35264_+	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	3.3e-26	52.9
WP_077790994.1\|35402_35585_-	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	2.4e-11	53.6
WP_106888249.1\|35992_39892_-\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	4.2e-238	40.3

DBSCAN-SWA_5

64328 : 73050

Bacillus_phage(25.0%)

integrase,transposase

attL 48422:48434|attR 72637:72649

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
48422:48434	attL	NA	NA	NA	NA
WP_074433587.1\|64328_66449_+	enterohemolysin T1SS ABC transporter permease/ATPase EhxB	W8CYL7	Bacillus_phage	1.2e-45	30.2
WP_032207106.1\|66452_67892_+	enterohemolysin T1SS ABC transporter subunit EhxD	NA	NA	NA	NA
WP_072057408.1\|67958_68417_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_106913930.1\|69379_70653_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	4.4e-176	98.3
WP_032208234.1\|71089_71830_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
WP_000361618.1\|72072_73050_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	3.0e-100	59.2
72637:72649	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP027459

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027459_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_1

789187-789323

Orphan

Consensus_repeat	Method
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_1

>merge|NZ_CP027459|1|789187-789323|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACTGAATGCCGGATGTGGCGTAAAACGCCTTATCCGGCCTACGGTTCTGTGCTCGGGTCTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA

>NZ_CP027459|1|1|789187-789323|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CTGAATGCCGGATGTGGCGTAAAACGCCTTATCCGGCCTACGGTTCTGTGCTCGGGT
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_047087788.1\|793460_794354_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalF	unknown	unknown	gnl\|CDD\|182252
NZ_CP027459.1\|WP_047087787.1\|791891_793286_+\|colanic-acid-biosynthesis-protein-WcaM	unknown	unknown	gnl\|CDD\|182253
NZ_CP027459.1\|WP_158707838.1\|795977_797144_+\|O172-family-O-antigen-polymerase	unknown	unknown	unknown
NZ_CP027459.1\|WP_052510634.1\|797140_797923_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|133474
NZ_CP027459.1\|WP_047087786.1\|789383_790664_+\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	unknown	unknown	gnl\|CDD\|188521
NZ_CP027459.1\|WP_000183133.1\|786232_787627_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|182254
NZ_CP027459.1\|WP_001325602.1\|784807_786178_+\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
NZ_CP027459.1\|WP_000058435.1\|787628_789107_+\|M-antigen-undecaprenyl-disphosphate-flippase	unknown	unknown	gnl\|CDD\|236697
NZ_CP027459.1\|WP_000079246.1\|783178_784615_+\|mannose-1-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|185357
NZ_CP027459.1\|WP_106913921.1\|799007_799241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027459.1\|WP_159031399.1\|799461_800088_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NZ_CP027459.1\|WP_000862671.1\|790660_791881_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	unknown	unknown	gnl\|CDD\|188520
NZ_CP027459.1\|WP_001342585.1\|781476_781956_+\|GDP-mannose-mannosyl-hydrolase	unknown	unknown	gnl\|CDD\|237966
NZ_CP027459.1\|WP_000048190.1\|779384_780506_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP027459.1\|WP_047087785.1\|780508_781474_+\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NZ_CP027459.1\|WP_000927089.1\|778048_778795_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	unknown	unknown	gnl\|CDD\|182218
NZ_CP027459.1\|WP_047087784.1\|778810_779359_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|188523
NZ_CP027459.1\|WP_158707839.1\|797988_799011_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP027459.1\|WP_000699772.1\|781952_783176_+\|colanic-acid-biosynthesis-fucosyltransferase-WcaI	unknown	unknown	gnl\|CDD\|188522
NZ_CP027459.1\|WP_047087789.1\|794674_795976_+\|O172-family-O-antigen-flippase	unknown	unknown	gnl\|CDD\|240533

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_047087788.1\|793460_794354_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0
NZ_CP027459.1\|WP_047087787.1\|791891_793286_+\|colanic-acid-biosynthesis-protein-WcaM	gnl\|CDD\|182253	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional.	0
NZ_CP027459.1\|WP_052510634.1\|797140_797923_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|133474	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.	3.37545e-25
NZ_CP027459.1\|WP_047087786.1\|789383_790664_+\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	gnl\|CDD\|188521	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK. This gene is the pyruvyl transferase involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP027459.1\|WP_000183133.1\|786232_787627_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|182254	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional.	0
NZ_CP027459.1\|WP_001325602.1\|784807_786178_+\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP027459.1\|WP_000058435.1\|787628_789107_+\|M-antigen-undecaprenyl-disphosphate-flippase	gnl\|CDD\|236697	PRK10459, PRK10459, MOP flippase family protein.	0
NZ_CP027459.1\|WP_000079246.1\|783178_784615_+\|mannose-1-phosphate-guanyltransferase	gnl\|CDD\|185357	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional.	0
NZ_CP027459.1\|WP_159031399.1\|799461_800088_+\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.24095e-24
NZ_CP027459.1\|WP_000862671.1\|790660_791881_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	gnl\|CDD\|188520	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP027459.1\|WP_001342585.1\|781476_781956_+\|GDP-mannose-mannosyl-hydrolase	gnl\|CDD\|237966	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase.	1.77973e-118
NZ_CP027459.1\|WP_000048190.1\|779384_780506_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP027459.1\|WP_047087785.1\|780508_781474_+\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP027459.1\|WP_000927089.1\|778048_778795_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	gnl\|CDD\|182218	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE.	4.86723e-180
NZ_CP027459.1\|WP_047087784.1\|778810_779359_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|188523	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species. This acetyltransferase is believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit).	1.13427e-131
NZ_CP027459.1\|WP_158707839.1\|797988_799011_+\|hypothetical-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	3.92251e-13
NZ_CP027459.1\|WP_000699772.1\|781952_783176_+\|colanic-acid-biosynthesis-fucosyltransferase-WcaI	gnl\|CDD\|188522	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP027459.1\|WP_047087789.1\|794674_795976_+\|O172-family-O-antigen-flippase	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.91107e-12

>NZ_CP027459.1|WP_000058435.1|787628_789107_+|M-antigen-undecaprenyl-disphosphate-flippase
MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLIGDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLGVSYALGIVLKGQLALGMLLAVQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG
>NZ_CP027459.1|WP_000183133.1|786232_787627_+|undecaprenyl-phosphate-glucose-phosphotransferase
MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAVKLTSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY
>NZ_CP027459.1|WP_001325602.1|784807_786178_+|phosphomannomutase-CpsG
MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKTLGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE
>NZ_CP027459.1|WP_000079246.1|783178_784615_+|mannose-1-phosphate-guanyltransferase
MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAATRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV
>NZ_CP027459.1|WP_000699772.1|781952_783176_+|colanic-acid-biosynthesis-fucosyltransferase-WcaI
MKILVYGINYSPELTGIGKYTGEMVEWLVAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHIADADVDALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADLLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG
>NZ_CP027459.1|WP_001342585.1|781476_781956_+|GDP-mannose-mannosyl-hydrolase
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTPDALLASDNVHANSRAYFLAEKRAGVPGL
>NZ_CP027459.1|WP_047087785.1|780508_781474_+|GDP-L-fucose-synthase
MSKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEAMAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG
>NZ_CP027459.1|WP_000048190.1|779384_780506_+|GDP-mannose-4,6-dehydratase
MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES
>NZ_CP027459.1|WP_047087784.1|778810_779359_+|colanic-acid-biosynthesis-acetyltransferase-WcaF
MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFSWSPQVLYRWRAFLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVETE
>NZ_CP027459.1|WP_000927089.1|778048_778795_+|colanic-acid-biosynthesis-glycosyltransferase-WcaE
MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSNDGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANFVRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSKTKALYNKV
>NZ_CP027459.1|WP_047087786.1|789383_790664_+|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK
MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLPGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILEACELTVGTRLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNTRLSEAVSRERQTGMQMVQSVLERIGEVK
>NZ_CP027459.1|WP_000862671.1|790660_791881_+|colanic-acid-biosynthesis-glycosyltransferase-WcaL
MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAARTRWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVIKRAREKVEHDFNQQVINRELASLLQAL
>NZ_CP027459.1|WP_047087787.1|791891_793286_+|colanic-acid-biosynthesis-protein-WcaM
MPFKKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHDWIASFKQAFGEGQTVVVPAGLVCDNINTGIFIPAGKTLHILGSLRGNGRGRFVLQDGSQVTGGEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFRVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELHNKPQHLFMRNIKVMQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNERGQSSVDIDRVNHHIVNVEKINFRLPERRE
>NZ_CP027459.1|WP_047087788.1|793460_794354_+|UTP--glucose-1-phosphate-uridylyltransferase-GalF
MTDLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLSADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIEKLLSE
>NZ_CP027459.1|WP_047087789.1|794674_795976_+|O172-family-O-antigen-flippase
MNNKTNELIGGMLFKGLYIFITSLNALLMVKILSPKDLGVWYVFMTLQTLIFTLNNAIIPNIARQYTLGSLSKELNFNCYIFHRSTQKIFIYLILLILIICAIATFTYLSSVLAILESQNKIVLVSWLIIVFSLCLEVYYSSYDCAFNGMGKFKNVNKINFISRACLFLISIGMIAYDIDGRNALLYFCIGYFISNLIKRFFIYRLFISNYHNLCFNSESDTESFYKKNEKIILNLSCMSFISSIGGMLIVRGGMLILPYYVSIEEVGKYGLTYQLFEIAFNLLFTASAIKTPSWIFLYKENKCELKKSYLKIKYVSLIVMAIGGGVISFYGGQILSLFGLHATLLTTNLCLLLTLIFILQLNHSISGQLLTIQNKIPYAYASLYTGIGVVLLSMIFIPITGFKGALVAIFISQLAYNNWKWPLEARKKIINV
>NZ_CP027459.1|WP_158707838.1|795977_797144_+|O172-family-O-antigen-polymerase
MSVNKKITKMFVFCEFLCGLYILFYGEYVSDYLNVETNVKHIYIICFLICIVFFHYLFLYSWCILSVLFFRKSKLTTSVNINSIFLLLVIIYFIFLLKTGSGKVYADGGSIGELSSFDKLLFFPIIILKLNFLIYIYAAGCKKKDNIYYLVLFIFLICELYRGVSFSILLIALIEIEKIKRCFRIKCLLISLPLFVLFVNIVYNIKFMVRLGEHYDYLDIFQTLIMLLGRLSIISNVLYNYEHYYSVSNFVEGFGYSAINEFLEKLTPMPSLFGITEKTTEIGKLIFYHSYGRWDSAIAISVLGILSIVPGQLLEICAILIISFVFIQLIINMLDNTEQQNTVAFFFIILTLYQGFWGLLANYVYALFIYLIIIASCNLMMSKSKGRL
>NZ_CP027459.1|WP_052510634.1|797140_797923_+|glycosyltransferase-family-25-protein
MNNLEIRVLSLPDAYARRTKFQERFSLVSKLKFQFFDGVYGKNIPDEILKSIYDDKKAKLKINRSMTVGEIGATYSHYLIYKDAYEKKLDYLIVLEDDSFVDENFDDVINRLLVKITPDDDAIIFIQKHTLDSKVIFSRKKDILKNGFELVKMLGSSQYFVGSYGYILTKKSINKIIQNYLPIYCVCDHWFFIKKDSKIESFYCVSPSLVYTNDEDIRLVDSFINEERKNVLKNRGVSRIGRIKIIIKRVVLRLLNKDWE
>NZ_CP027459.1|WP_158707839.1|797988_799011_+|hypothetical-protein
MCKPFSNKNKKVVVIGTRNGNQGNDNGEVFYSYLNDNNDNDDLLVYLIRRSKNKEKYKNILIKNSIRANIKILSADILYITHSESDLIDFWWRFVTYKKIVFIQHGVIGIKRLPEYEKKKFSLFVSSNNYEYEILIKYYNICSERIVKSGIPRFDNYTILNEAPQKIKKCLVMFTWRKFYKDEQSIRLKRVISTIIRNEPSIKIYVASHELSDYSLSEFEFYNINYVESIGIQNAIKECDLLITDYSSIAWDFLYQNKLICFIQTDYLEYVFNEGVYFHCDDFFGYIIRDLSDINDAFISEILRVNKLNNQEFLKRYPFYINYKKKHSELLFLETMEYNR
>NZ_CP027459.1|WP_106913921.1|799007_799241_+|hypothetical-protein
MKIIIYATAAVDGGALSLLNDLLEYANDDIDNEYTVCVNEKLNNEVSVYNNLTFLFVDTKAWHKRVYFDFIGFKKKL
>NZ_CP027459.1|WP_159031399.1|799461_800088_+|glycosyltransferase
MRKAVIDKLNLSEKKISIIRPVIDIDLNKILKNENENENTFIYPAASYSYKNHIILVESLNMIGVDFLFQNKITVIFTLDRDENSKLFDRIKKYNLQEIIKFTGNIPRYDVLNYIYNAKALLFPSRLETFGIPLIEAVKFNSNIIVSDLPYAHDVLDGYENVKYCNPDSPEDWSEAIKFAINLKENKLNQGFELNSGWRELSSIISTL

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Crispr_ID: NZ_CP027459_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_2

1300089-1300212

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_2

>merge|NZ_CP027459|2|1300089-1300212|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP027459|2|2|1300089-1300212|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_001070230.1\|1292142_1292769_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP027459.1\|WP_032207914.1\|1306855_1307788_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP027459.1\|WP_047087367.1\|1295640_1296309_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP027459.1\|WP_000190982.1\|1307784_1308810_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP027459.1\|WP_000212657.1\|1299648_1299954_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP027459.1\|WP_032207910.1\|1300526_1301783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP027459.1\|WP_047087347.1\|1297918_1299523_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP027459.1\|WP_000098911.1\|1304092_1305241_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP027459.1\|WP_000493947.1\|1303411_1304053_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP027459.1\|WP_000587555.1\|1297094_1297907_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP027459.1\|WP_106913926.1\|1294903_1295557_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP027459.1\|WP_001182363.1\|1305531_1306743_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP027459.1\|WP_032207912.1\|1301823_1303197_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP027459.1\|WP_001295403.1\|1289508_1290921_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP027459.1\|WP_032207899.1\|1291477_1291687_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP027459.1\|WP_000007283.1\|1310677_1311259_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP027459.1\|WP_000648420.1\|1288961_1289198_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NZ_CP027459.1\|WP_000102278.1\|1309107_1309197_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP027459.1\|WP_032207916.1\|1309362_1310532_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP027459.1\|WP_001069986.1\|1296305_1297091_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_001070230.1\|1292142_1292769_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP027459.1\|WP_032207914.1\|1306855_1307788_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP027459.1\|WP_047087367.1\|1295640_1296309_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.62069e-74
NZ_CP027459.1\|WP_000190982.1\|1307784_1308810_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP027459.1\|WP_000212657.1\|1299648_1299954_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP027459.1\|WP_032207910.1\|1300526_1301783_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP027459.1\|WP_047087347.1\|1297918_1299523_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP027459.1\|WP_000098911.1\|1304092_1305241_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP027459.1\|WP_000493947.1\|1303411_1304053_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP027459.1\|WP_000587555.1\|1297094_1297907_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	9.78241e-175
NZ_CP027459.1\|WP_106913926.1\|1294903_1295557_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	4.62884e-111
NZ_CP027459.1\|WP_001182363.1\|1305531_1306743_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP027459.1\|WP_032207912.1\|1301823_1303197_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP027459.1\|WP_001295403.1\|1289508_1290921_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP027459.1\|WP_032207899.1\|1291477_1291687_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	3.13491e-34
NZ_CP027459.1\|WP_000007283.1\|1310677_1311259_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP027459.1\|WP_000648420.1\|1288961_1289198_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
NZ_CP027459.1\|WP_032207916.1\|1309362_1310532_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.34893e-97
NZ_CP027459.1\|WP_001069986.1\|1296305_1297091_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.08478e-163

>NZ_CP027459.1|WP_000212657.1|1299648_1299954_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP027459.1|WP_047087347.1|1297918_1299523_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEANHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLQLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQYLPSKTFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP027459.1|WP_000587555.1|1297094_1297907_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLAQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP027459.1|WP_001069986.1|1296305_1297091_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP027459.1|WP_047087367.1|1295640_1296309_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQARLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP027459.1|WP_106913926.1|1294903_1295557_+|YdhW-family-putative-oxidoreductase-system-protein
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLWLMAYGLWLMAYANGSR
>NZ_CP027459.1|WP_001070230.1|1292142_1292769_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP027459.1|WP_032207899.1|1291477_1291687_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETIINALVK
>NZ_CP027459.1|WP_001295403.1|1289508_1290921_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP027459.1|WP_000648420.1|1288961_1289198_-|murein-lipoprotein-Lpp
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>NZ_CP027459.1|WP_032207910.1|1300526_1301783_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFCVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSEVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQFYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP027459.1|WP_032207912.1|1301823_1303197_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPDLADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP027459.1|WP_000493947.1|1303411_1304053_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP027459.1|WP_000098911.1|1304092_1305241_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP027459.1|WP_001182363.1|1305531_1306743_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP027459.1|WP_032207914.1|1306855_1307788_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGACFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP027459.1|WP_000190982.1|1307784_1308810_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP027459.1|WP_000102278.1|1309107_1309197_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP027459.1|WP_032207916.1|1309362_1310532_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRISTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKDLAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP027459.1|WP_000007283.1|1310677_1311259_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP027459_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_3

2109530-2109621

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_3

>merge|NZ_CP027459|3|2109530-2109621|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTCCCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP027459|3|3|2109530-2109621|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTCCCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_001352489.1\|2104194_2105286_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP027459.1\|WP_032206540.1\|2110926_2112168_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP027459.1\|WP_000191700.1\|2103268_2103907_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP027459.1\|WP_001230242.1\|2118438_2119611_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP027459.1\|WP_001001183.1\|2107193_2107784_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP027459.1\|WP_001307099.1\|2106383_2107184_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP027459.1\|WP_001028096.1\|2107794_2108289_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP027459.1\|WP_032206541.1\|2115892_2118439_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP027459.1\|WP_000420617.1\|2113978_2114899_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP027459.1\|WP_001143120.1\|2110661_2110889_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP027459.1\|WP_032206543.1\|2119740_2120433_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP027459.1\|WP_047087704.1\|2112458_2113718_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP027459.1\|WP_001018495.1\|2097512_2099021_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
NZ_CP027459.1\|WP_000209866.1\|2115296_2115896_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP027459.1\|WP_001307100.1\|2105285_2105978_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP027459.1\|WP_032206537.1\|2108309_2109416_+\|pyrimidine-permease	unknown	unknown	gnl\|CDD\|132655
NZ_CP027459.1\|WP_032206538.1\|2110044_2110641_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP027459.1\|WP_047087703.1\|2099266_2103229_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP027459.1\|WP_032206557.1\|2114898_2115204_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP027459.1\|WP_001126780.1\|2105989_2106376_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_001352489.1\|2104194_2105286_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP027459.1\|WP_032206540.1\|2110926_2112168_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP027459.1\|WP_000191700.1\|2103268_2103907_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12845e-153
NZ_CP027459.1\|WP_001230242.1\|2118438_2119611_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP027459.1\|WP_001001183.1\|2107193_2107784_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	2.57102e-129
NZ_CP027459.1\|WP_001307099.1\|2106383_2107184_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP027459.1\|WP_001028096.1\|2107794_2108289_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.28716e-106
NZ_CP027459.1\|WP_032206541.1\|2115892_2118439_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP027459.1\|WP_000420617.1\|2113978_2114899_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP027459.1\|WP_001143120.1\|2110661_2110889_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP027459.1\|WP_032206543.1\|2119740_2120433_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	3.2572e-137
NZ_CP027459.1\|WP_047087704.1\|2112458_2113718_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP027459.1\|WP_001018495.1\|2097512_2099021_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
NZ_CP027459.1\|WP_000209866.1\|2115296_2115896_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	2.07423e-84
NZ_CP027459.1\|WP_001307100.1\|2105285_2105978_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP027459.1\|WP_032206537.1\|2108309_2109416_+\|pyrimidine-permease	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	1.41788e-100
NZ_CP027459.1\|WP_032206538.1\|2110044_2110641_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	3.22018e-133
NZ_CP027459.1\|WP_047087703.1\|2099266_2103229_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP027459.1\|WP_032206557.1\|2114898_2115204_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	3.6678e-64
NZ_CP027459.1\|WP_001126780.1\|2105989_2106376_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85

>NZ_CP027459.1|WP_032206537.1|2108309_2109416_+|pyrimidine-permease
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAENLGHLKAVAGMTGRNMDPYMGRAFVGNGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAATVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP027459.1|WP_001028096.1|2107794_2108289_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP027459.1|WP_001001183.1|2107193_2107784_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP027459.1|WP_001307099.1|2106383_2107184_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP027459.1|WP_001126780.1|2105989_2106376_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP027459.1|WP_001307100.1|2105285_2105978_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP027459.1|WP_001352489.1|2104194_2105286_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAVRMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP027459.1|WP_000191700.1|2103268_2103907_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP027459.1|WP_047087703.1|2099266_2103229_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSPHNEASLSRSLNRIIGKSGEQLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFTTPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIADALAAGNSVLAKPAEQTPLIATQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGLTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP027459.1|WP_001018495.1|2097512_2099021_-|sodium/proline-symporter-PutP
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKQASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQEN
>NZ_CP027459.1|WP_032206538.1|2110044_2110641_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFCSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP027459.1|WP_001143120.1|2110661_2110889_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP027459.1|WP_032206540.1|2110926_2112168_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMNRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKDLSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP027459.1|WP_047087704.1|2112458_2113718_-|YccE-family-protein
MGSNIHGIGCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSEGITYTIQYVRDIDIIRVSLPGRASESITDFKGYYWYGFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLAVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP027459.1|WP_000420617.1|2113978_2114899_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP027459.1|WP_032206557.1|2114898_2115204_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLLQRLSRFVAHP
>NZ_CP027459.1|WP_000209866.1|2115296_2115896_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP027459.1|WP_032206541.1|2115892_2118439_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLSDHVHNAARIRYPMVRVDWLRKRHRSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSIGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEVEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFQPYLLGEKDGQPKDAAWAEKLTGIDAESIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPCSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP027459.1|WP_001230242.1|2118438_2119611_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP027459.1|WP_032206543.1|2119740_2120433_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGVGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP027459_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_4

2372653-2372801

Orphan

I-F

Consensus_repeat	Method
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP027459_4

>merge|NZ_CP027459|4|2372653-2372801|CRISPRCasFinder,PILER-CR
GCATTTTATCTGTCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCTGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCGTTCGCAAAGGTTTTACCGCACCCCGTCGATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP027459|4|4|2372653-2372801|CRISPRCasFinder
GCATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCTGTGA
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGTTCGCAAAGGTTTTACCGCACCCCGTCG
ATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP027459|4|1|2372662-2372801|PILER-CR
CTGTCTGTACGGCAGTGAACATGGTGGGC	GGGTGGAGTATGTTACCTGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCGTTCGCA	AAGGTTTTACCGCACCCCGTCGATTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_001145908.1\|2379118_2379559_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP027459.1\|WP_047087436.1\|2367531_2369298_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP027459.1\|WP_016241300.1\|2379851_2380190_-\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|227901
NZ_CP027459.1\|WP_000228473.1\|2365404_2365899_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP027459.1\|WP_047087435.1\|2373012_2375289_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP027459.1\|WP_000886683.1\|2357698_2358991_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP027459.1\|WP_000113648.1\|2378473_2378830_-\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|226270
NZ_CP027459.1\|WP_001295343.1\|2360436_2361048_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP027459.1\|WP_000134111.1\|2379558_2379855_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130623
NZ_CP027459.1\|WP_000520781.1\|2375319_2375640_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP027459.1\|WP_001040187.1\|2372050_2372269_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP027459.1\|WP_047087434.1\|2376534_2376816_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027459.1\|WP_000067756.1\|2359082_2360426_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP027459.1\|WP_047087437.1\|2361202_2365270_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP027459.1\|WP_001475695.1\|2382012_2383170_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|227000
NZ_CP027459.1\|WP_000537418.1\|2366443_2367409_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP027459.1\|WP_001475696.1\|2381399_2381957_-\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|226263
NZ_CP027459.1\|WP_001202188.1\|2369298_2371020_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP027459.1\|WP_122993077.1\|2380186_2381362_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227039
NZ_CP027459.1\|WP_032208045.1\|2371061_2371766_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_001145908.1\|2379118_2379559_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.38968e-15
NZ_CP027459.1\|WP_047087436.1\|2367531_2369298_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP027459.1\|WP_016241300.1\|2379851_2380190_-\|phage-head-closure-protein	gnl\|CDD\|227901	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only].	5.56349e-43
NZ_CP027459.1\|WP_000228473.1\|2365404_2365899_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP027459.1\|WP_047087435.1\|2373012_2375289_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP027459.1\|WP_000886683.1\|2357698_2358991_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP027459.1\|WP_000113648.1\|2378473_2378830_-\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|226270	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair].	4.53234e-48
NZ_CP027459.1\|WP_001295343.1\|2360436_2361048_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP027459.1\|WP_000134111.1\|2379558_2379855_-\|hypothetical-protein	gnl\|CDD\|130623	TIGR01560, phage-related_hypothetical_protein, uncharacterized phage protein (possible DNA packaging). This model describes a small (~ 100 amino acids) protein found in phage and in putative prophage regions of a number of bacterial genomes. Members have been annotated in some cases as a possible DNA packaging protein, but the source of this annotation was not traced during construction of this model. [Mobile and extrachromosomal element functions, Prophage functions].	4.7238e-38
NZ_CP027459.1\|WP_000520781.1\|2375319_2375640_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP027459.1\|WP_001040187.1\|2372050_2372269_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP027459.1\|WP_000067756.1\|2359082_2360426_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP027459.1\|WP_047087437.1\|2361202_2365270_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP027459.1\|WP_001475695.1\|2382012_2383170_-\|phage-major-capsid-protein	gnl\|CDD\|227000	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only].	2.33893e-162
NZ_CP027459.1\|WP_000537418.1\|2366443_2367409_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP027459.1\|WP_001475696.1\|2381399_2381957_-\|HK97-family-phage-prohead-protease	gnl\|CDD\|226263	COG3740, COG3740, Phage head maturation protease [General function prediction only].	4.43324e-77
NZ_CP027459.1\|WP_001202188.1\|2369298_2371020_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP027459.1\|WP_122993077.1\|2380186_2381362_-\|phage-portal-protein	gnl\|CDD\|227039	COG4695, COG4695, Phage-related protein [Function unknown].	1.32676e-148
NZ_CP027459.1\|WP_032208045.1\|2371061_2371766_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	6.08206e-138

>NZ_CP027459.1|WP_001040187.1|2372050_2372269_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP027459.1|WP_032208045.1|2371061_2371766_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHSHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP027459.1|WP_001202188.1|2369298_2371020_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESLRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP027459.1|WP_047087436.1|2367531_2369298_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAKIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP027459.1|WP_000537418.1|2366443_2367409_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP027459.1|WP_000228473.1|2365404_2365899_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP027459.1|WP_047087437.1|2361202_2365270_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAVAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPDGYPQQSQYAQPAVQYNEPLQQPVQPLQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQSVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQQQYQQPQQPVAPQPQYQQPQQQVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADCMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP027459.1|WP_001295343.1|2360436_2361048_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP027459.1|WP_000067756.1|2359082_2360426_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP027459.1|WP_000886683.1|2357698_2358991_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP027459.1|WP_047087435.1|2373012_2375289_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTAYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP027459.1|WP_000520781.1|2375319_2375640_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP027459.1|WP_047087434.1|2376534_2376816_-|hypothetical-protein
MTEAEILGLIRRVSGISQQHDEQGTQPDSVTAENYARVVAEVMRRDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHWKKPERLRR
>NZ_CP027459.1|WP_000113648.1|2378473_2378830_-|phage-terminase-small-subunit-P27-family
MARPPKVPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
>NZ_CP027459.1|WP_001145908.1|2379118_2379559_-|HNH-endonuclease
MPWQPLRRCTEPGCNRRVKSGKCEEHRRSARQQQDSRRGSSRERGYTRQWEKYRAMYLSKNPLCAHCLEKGIYTPAVVVDHIIPIDGGNDVLFWPEWNHQPLCQACHNQKTKWLDPSTKNKRAAGGFREEEERAANRNNWMYGADE
>NZ_CP027459.1|WP_000134111.1|2379558_2379855_-|hypothetical-protein
MTEELITLEEVKLHCRIDGDEEDQLISGYIAASLEACQIHIGRRFDDGLEFTPAIKIGCMMFIAHLYENRQIVADNAKTHVPMTIGALWTAYRDVGVY
>NZ_CP027459.1|WP_016241300.1|2379851_2380190_-|phage-head-closure-protein
MNIGRLRDRVTIQTLKQTRAMTGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVNTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
>NZ_CP027459.1|WP_122993077.1|2380186_2381362_-|phage-portal-protein
MTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRHCLLNGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGEHNWRYCITDAYTGNTRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVVSPVPGIRYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
>NZ_CP027459.1|WP_001475696.1|2381399_2381957_-|HK97-family-phage-prohead-protease
MKSMEIRSSEITTSASNTLTGYVVRWDNLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDDTGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
>NZ_CP027459.1|WP_001475695.1|2382012_2383170_-|phage-major-capsid-protein
MPRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGAVVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPVDDLAWTSADPLIDLKFALRKKYRKNAVWVVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILELPQDDD

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Crispr_ID: NZ_CP027459_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_5

3250784-3250899

Orphan

Consensus_repeat	Method
AACGCCTGATGCGACGCTGACGCGTCTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_5

>merge|NZ_CP027459|5|3250784-3250899|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATC

>NZ_CP027459|5|5|3250784-3250899|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATC	TGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTC
AACGCCTGATGCGACGCTGGCGCGTCTTATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_106913947.1\|3259012_3261367_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP027459.1\|WP_032205933.1\|3261419_3262706_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP027459.1\|WP_032205956.1\|3246333_3247212_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP027459.1\|WP_001297366.1\|3240343_3241999_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP027459.1\|WP_000235700.1\|3243121_3244732_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP027459.1\|WP_032205931.1\|3254248_3257155_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP027459.1\|WP_000610901.1\|3264515_3264893_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP027459.1\|WP_000951769.1\|3247550_3249251_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP027459.1\|WP_001295536.1\|3242162_3243146_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP027459.1\|WP_001200573.1\|3257942_3258758_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP027459.1\|WP_000241259.1\|3262705_3263695_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP027459.1\|WP_000888666.1\|3250963_3251659_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP027459.1\|WP_000151734.1\|3249261_3250764_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP027459.1\|WP_032205934.1\|3263691_3264513_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP027459.1\|WP_000525176.1\|3257166_3257826_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP027459.1\|WP_000916287.1\|3244715_3245414_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP027459.1\|WP_032205927.1\|3245483_3246248_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP027459.1\|WP_032205930.1\|3251733_3254085_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP027459.1\|WP_000637846.1\|3238843_3240022_-\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP027459.1\|WP_001248770.1\|3240123_3240255_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_106913947.1\|3259012_3261367_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP027459.1\|WP_032205933.1\|3261419_3262706_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP027459.1\|WP_032205956.1\|3246333_3247212_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP027459.1\|WP_001297366.1\|3240343_3241999_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP027459.1\|WP_000235700.1\|3243121_3244732_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP027459.1\|WP_032205931.1\|3254248_3257155_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP027459.1\|WP_000610901.1\|3264515_3264893_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP027459.1\|WP_000951769.1\|3247550_3249251_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP027459.1\|WP_001295536.1\|3242162_3243146_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP027459.1\|WP_001200573.1\|3257942_3258758_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP027459.1\|WP_000241259.1\|3262705_3263695_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP027459.1\|WP_000888666.1\|3250963_3251659_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	9.28933e-180
NZ_CP027459.1\|WP_000151734.1\|3249261_3250764_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP027459.1\|WP_032205934.1\|3263691_3264513_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.85371e-146
NZ_CP027459.1\|WP_000525176.1\|3257166_3257826_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP027459.1\|WP_000916287.1\|3244715_3245414_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.09593e-164
NZ_CP027459.1\|WP_032205927.1\|3245483_3246248_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.07701e-49
NZ_CP027459.1\|WP_032205930.1\|3251733_3254085_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP027459.1\|WP_000637846.1\|3238843_3240022_-\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP027459.1\|WP_001248770.1\|3240123_3240255_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924

>NZ_CP027459.1|WP_000151734.1|3249261_3250764_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP027459.1|WP_000951769.1|3247550_3249251_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL
>NZ_CP027459.1|WP_032205956.1|3246333_3247212_-|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQLHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP027459.1|WP_032205927.1|3245483_3246248_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWIGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP027459.1|WP_000916287.1|3244715_3245414_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTDELLSGKASASALLGITG
>NZ_CP027459.1|WP_000235700.1|3243121_3244732_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP027459.1|WP_001295536.1|3242162_3243146_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP027459.1|WP_001297366.1|3240343_3241999_+|HTH-type-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP027459.1|WP_001248770.1|3240123_3240255_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP027459.1|WP_000637846.1|3238843_3240022_-|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV
>NZ_CP027459.1|WP_000888666.1|3250963_3251659_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP027459.1|WP_032205930.1|3251733_3254085_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVKGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDTRLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP027459.1|WP_032205931.1|3254248_3257155_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVEGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLFLSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP027459.1|WP_000525176.1|3257166_3257826_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP027459.1|WP_001200573.1|3257942_3258758_-|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP027459.1|WP_106913947.1|3259012_3261367_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWKGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDIDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP027459.1|WP_032205933.1|3261419_3262706_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFASAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP027459.1|WP_000241259.1|3262705_3263695_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP027459.1|WP_032205934.1|3263691_3264513_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPLAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAKNAPLQES
>NZ_CP027459.1|WP_000610901.1|3264515_3264893_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH

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Crispr_ID: NZ_CP027459_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_6

3273812-3273944

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP027459_6

>merge|NZ_CP027459|6|3273812-3273944|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>NZ_CP027459|6|2|3273812-3273944|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_001091499.1\|3271994_3272936_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP027459.1\|WP_032205935.1\|3270657_3271944_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP027459.1\|WP_000610901.1\|3264515_3264893_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP027459.1\|WP_000543605.1\|3286928_3287750_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP027459.1\|WP_000333120.1\|3281429_3281825_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP027459.1\|WP_047087176.1\|3275738_3276881_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP027459.1\|WP_000203741.1\|3270373_3270661_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP027459.1\|WP_000122876.1\|3280753_3281344_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP027459.1\|WP_000600725.1\|3268345_3268876_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP027459.1\|WP_000692204.1\|3272950_3273721_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP027459.1\|WP_000257192.1\|3264899_3265742_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP027459.1\|WP_000624375.1\|3265819_3266299_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP027459.1\|WP_000004397.1\|3279962_3280748_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP027459.1\|WP_001183198.1\|3268983_3270315_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP027459.1\|WP_032205941.1\|3285324_3286473_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP027459.1\|WP_000377194.1\|3266490_3268353_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP027459.1\|WP_000349926.1\|3277009_3278227_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP027459.1\|WP_032205938.1\|3278300_3279854_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP027459.1\|WP_001126376.1\|3282085_3285307_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP027459.1\|WP_000787103.1\|3274193_3275708_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_001091499.1\|3271994_3272936_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP027459.1\|WP_032205935.1\|3270657_3271944_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP027459.1\|WP_000610901.1\|3264515_3264893_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP027459.1\|WP_000543605.1\|3286928_3287750_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.09638e-141
NZ_CP027459.1\|WP_000333120.1\|3281429_3281825_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.96175e-74
NZ_CP027459.1\|WP_047087176.1\|3275738_3276881_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP027459.1\|WP_000203741.1\|3270373_3270661_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP027459.1\|WP_000122876.1\|3280753_3281344_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.12106e-142
NZ_CP027459.1\|WP_000600725.1\|3268345_3268876_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP027459.1\|WP_000692204.1\|3272950_3273721_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
NZ_CP027459.1\|WP_000257192.1\|3264899_3265742_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP027459.1\|WP_000624375.1\|3265819_3266299_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP027459.1\|WP_000004397.1\|3279962_3280748_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	4.82171e-178
NZ_CP027459.1\|WP_001183198.1\|3268983_3270315_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP027459.1\|WP_032205941.1\|3285324_3286473_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP027459.1\|WP_000377194.1\|3266490_3268353_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP027459.1\|WP_000349926.1\|3277009_3278227_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP027459.1\|WP_032205938.1\|3278300_3279854_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP027459.1\|WP_001126376.1\|3282085_3285307_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP027459.1\|WP_000787103.1\|3274193_3275708_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0

>NZ_CP027459.1|WP_000692204.1|3272950_3273721_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP027459.1|WP_001091499.1|3271994_3272936_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP027459.1|WP_032205935.1|3270657_3271944_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNSRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP027459.1|WP_000203741.1|3270373_3270661_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP027459.1|WP_001183198.1|3268983_3270315_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP027459.1|WP_000600725.1|3268345_3268876_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP027459.1|WP_000377194.1|3266490_3268353_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP027459.1|WP_000624375.1|3265819_3266299_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP027459.1|WP_000257192.1|3264899_3265742_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>NZ_CP027459.1|WP_000610901.1|3264515_3264893_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP027459.1|WP_000787103.1|3274193_3275708_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP027459.1|WP_047087176.1|3275738_3276881_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDAMQILTLGRAVLKQYR
>NZ_CP027459.1|WP_000349926.1|3277009_3278227_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP027459.1|WP_032205938.1|3278300_3279854_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEKGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP027459.1|WP_000004397.1|3279962_3280748_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIFRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP027459.1|WP_000122876.1|3280753_3281344_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP027459.1|WP_000333120.1|3281429_3281825_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP027459.1|WP_001126376.1|3282085_3285307_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP027459.1|WP_032205941.1|3285324_3286473_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTHDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP027459.1|WP_000543605.1|3286928_3287750_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL

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Crispr_ID: NZ_CP027459_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_7

3454431-3454543

Orphan

Consensus_repeat	Method
CGGATGCGGCGTGAACGCCTTATCCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_7

>merge|NZ_CP027459|7|3454431-3454543|CRISPRCasFinder
CGGATGCGGCGTGAACGCCTTATCCGACTGAACTCGTAGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGAC

>NZ_CP027459|7|6|3454431-3454543|CRISPRCasFinder
CGGATGCGGCGTGAACGCCTTATCCGAC	TGAACTCGTAGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAATGCTGTTATTGT
CGGATGCGGCATGAACGCCTTATCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_000012919.1\|3460504_3461509_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP027459.1\|WP_001548056.1\|3463929_3464523_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP027459.1\|WP_001309159.1\|3447748_3448747_+\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP027459.1\|WP_032208262.1\|3455094_3457950_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP027459.1\|WP_000002953.1\|3459926_3460343_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP027459.1\|WP_047087878.1\|3451526_3452627_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP027459.1\|WP_000786399.1\|3454651_3455095_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP027459.1\|WP_047087884.1\|3440934_3442197_-\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP027459.1\|WP_074433542.1\|3461580_3461736_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP027459.1\|WP_000397144.1\|3452893_3454405_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP027459.1\|WP_000583470.1\|3463332_3463785_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP027459.1\|WP_001296693.1\|3466113_3466248_+\|pyr-operon-leader-peptide	unknown	unknown	gnl\|CDD\|285317
NZ_CP027459.1\|WP_047087881.1\|3443698_3444262_-\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP027459.1\|WP_047087874.1\|3464593_3465307_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP027459.1\|WP_001197416.1\|3444478_3445510_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP027459.1\|WP_047087879.1\|3446362_3447682_+\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP027459.1\|WP_032208422.1\|3442675_3443695_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP027459.1\|WP_001295681.1\|3450444_3451527_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP027459.1\|WP_001059422.1\|3459377_3459881_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP027459.1\|WP_000998695.1\|3445533_3446298_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_000012919.1\|3460504_3461509_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP027459.1\|WP_001548056.1\|3463929_3464523_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.93166e-10
NZ_CP027459.1\|WP_001309159.1\|3447748_3448747_+\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP027459.1\|WP_032208262.1\|3455094_3457950_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP027459.1\|WP_000002953.1\|3459926_3460343_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP027459.1\|WP_047087878.1\|3451526_3452627_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP027459.1\|WP_000786399.1\|3454651_3455095_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP027459.1\|WP_047087884.1\|3440934_3442197_-\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	5.04498e-81
NZ_CP027459.1\|WP_000397144.1\|3452893_3454405_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP027459.1\|WP_000583470.1\|3463332_3463785_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NZ_CP027459.1\|WP_001296693.1\|3466113_3466248_+\|pyr-operon-leader-peptide	gnl\|CDD\|285317	pfam08052, PyrBI_leader, PyrBI operon leader peptide. This family consists of the pyrBI operon leader peptides. The expression of the pyrBI operon, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase. is regulated primarily through a UTP-sensitive transcriptional attenuation control mechanism. In this mechanism, the concentration of UTP determines the extent of coupling between transcription and translation within the pyrBI leader region, hence determining the level of rho-independent transcriptional termination at an attenuator preceding the pyrB gene.	7.18385e-22
NZ_CP027459.1\|WP_047087881.1\|3443698_3444262_-\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.09227e-125
NZ_CP027459.1\|WP_047087874.1\|3464593_3465307_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.49921e-149
NZ_CP027459.1\|WP_001197416.1\|3444478_3445510_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP027459.1\|WP_047087879.1\|3446362_3447682_+\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP027459.1\|WP_032208422.1\|3442675_3443695_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	7.75177e-168
NZ_CP027459.1\|WP_001295681.1\|3450444_3451527_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP027459.1\|WP_001059422.1\|3459377_3459881_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.57543e-19
NZ_CP027459.1\|WP_000998695.1\|3445533_3446298_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0

>NZ_CP027459.1|WP_000397144.1|3452893_3454405_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP027459.1|WP_047087878.1|3451526_3452627_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQMRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP027459.1|WP_001295681.1|3450444_3451527_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP027459.1|WP_001309159.1|3447748_3448747_+|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP027459.1|WP_047087879.1|3446362_3447682_+|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIAAIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFADVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTPGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP027459.1|WP_000998695.1|3445533_3446298_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP027459.1|WP_001197416.1|3444478_3445510_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP027459.1|WP_047087881.1|3443698_3444262_-|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDALHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP027459.1|WP_032208422.1|3442675_3443695_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVHVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>NZ_CP027459.1|WP_047087884.1|3440934_3442197_-|integrase-arm-type-DNA-binding-domain-containing-protein
MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARSRRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRSSELRFARWSEVDFETAMWTIPGEREPLDGVKHSQRGSKMRTPHLVPLSRQALAILEKIKCMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQEHSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKAVSPFNFGKMNYQK
>NZ_CP027459.1|WP_000786399.1|3454651_3455095_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP027459.1|WP_032208262.1|3455094_3457950_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIELHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPLYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP027459.1|WP_001059422.1|3459377_3459881_+|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYDGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NZ_CP027459.1|WP_000002953.1|3459926_3460343_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP027459.1|WP_000012919.1|3460504_3461509_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRTLAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP027459.1|WP_074433542.1|3461580_3461736_-|DNA-binding-protein
MINELKIRTRMMKILRNGKINIYEYINKEQLEKLNPPEDLRISIEKYGWNN
>NZ_CP027459.1|WP_000583470.1|3463332_3463785_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP027459.1|WP_001548056.1|3463929_3464523_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHSQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILEE
>NZ_CP027459.1|WP_047087874.1|3464593_3465307_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTYGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP027459.1|WP_001296693.1|3466113_3466248_+|pyr-operon-leader-peptide
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR

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Crispr_ID: NZ_CP027459_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_8

4766757-4766877

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_8

>merge|NZ_CP027459|8|4766757-4766877|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGTG

>NZ_CP027459|8|7|4766757-4766877|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTG	CTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_000633577.1\|4767134_4767836_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP027459.1\|WP_000531201.1\|4770143_4771130_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP027459.1\|WP_000104211.1\|4755011_4755950_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP027459.1\|WP_000145828.1\|4754477_4754822_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP027459.1\|WP_000548347.1\|4756048_4757038_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP027459.1\|WP_001297162.1\|4758416_4759625_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP027459.1\|WP_001576119.1\|4768887_4769244_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP027459.1\|WP_000719990.1\|4761966_4762356_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP027459.1\|WP_032208124.1\|4762427_4763792_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP027459.1\|WP_000861734.1\|4759658_4761953_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP027459.1\|WP_000401598.1\|4764066_4765398_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP027459.1\|WP_000384145.1\|4769485_4769851_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP027459.1\|WP_000096086.1\|4771777_4772077_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP027459.1\|WP_000785722.1\|4772066_4772471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP027459.1\|WP_001297155.1\|4771199_4771682_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP027459.1\|WP_000031415.1\|4772473_4772779_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP027459.1\|WP_000107720.1\|4757059_4758391_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP027459.1\|WP_001295544.1\|4766947_4767112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027459.1\|WP_047087621.1\|4765425_4766736_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP027459.1\|WP_001041010.1\|4767940_4768837_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_000633577.1\|4767134_4767836_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
NZ_CP027459.1\|WP_000531201.1\|4770143_4771130_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP027459.1\|WP_000104211.1\|4755011_4755950_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP027459.1\|WP_000145828.1\|4754477_4754822_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	6.78402e-66
NZ_CP027459.1\|WP_000548347.1\|4756048_4757038_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP027459.1\|WP_001297162.1\|4758416_4759625_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP027459.1\|WP_001576119.1\|4768887_4769244_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.67888e-38
NZ_CP027459.1\|WP_000719990.1\|4761966_4762356_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
NZ_CP027459.1\|WP_032208124.1\|4762427_4763792_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP027459.1\|WP_000031415.1\|4772473_4772779_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP027459.1\|WP_000401598.1\|4764066_4765398_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
NZ_CP027459.1\|WP_000384145.1\|4769485_4769851_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
NZ_CP027459.1\|WP_000096086.1\|4771777_4772077_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP027459.1\|WP_000785722.1\|4772066_4772471_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP027459.1\|WP_001297155.1\|4771199_4771682_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.8408e-29
NZ_CP027459.1\|WP_000107720.1\|4757059_4758391_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP027459.1\|WP_000861734.1\|4759658_4761953_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP027459.1\|WP_047087621.1\|4765425_4766736_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP027459.1\|WP_001041010.1\|4767940_4768837_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51

>NZ_CP027459.1|WP_047087621.1|4765425_4766736_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKELSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP027459.1|WP_000401598.1|4764066_4765398_+|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>NZ_CP027459.1|WP_032208124.1|4762427_4763792_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAVGGRVVTAPTNGACGIIPAVLAYYDKSRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCD
>NZ_CP027459.1|WP_000719990.1|4761966_4762356_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP027459.1|WP_000861734.1|4759658_4761953_+|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP027459.1|WP_001297162.1|4758416_4759625_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP027459.1|WP_000107720.1|4757059_4758391_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP027459.1|WP_000548347.1|4756048_4757038_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP027459.1|WP_000104211.1|4755011_4755950_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP027459.1|WP_000145828.1|4754477_4754822_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLISKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP027459.1|WP_001295544.1|4766947_4767112_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP027459.1|WP_000633577.1|4767134_4767836_-|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP027459.1|WP_001041010.1|4767940_4768837_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>NZ_CP027459.1|WP_001576119.1|4768887_4769244_-|DUF805-domain-containing-protein
MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLFFFCTEGTSGSNRYGNDPKFGSN
>NZ_CP027459.1|WP_000384145.1|4769485_4769851_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>NZ_CP027459.1|WP_000531201.1|4770143_4771130_-|glutathione-S-transferase-family-protein
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP027459.1|WP_001297155.1|4771199_4771682_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP027459.1|WP_000096086.1|4771777_4772077_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP027459.1|WP_000785722.1|4772066_4772471_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP027459.1|WP_000031415.1|4772473_4772779_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: NZ_CP027459_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_9

5186166-5186249

Orphan

I-E

Consensus_repeat	Method
GTTCCCCGCGCCAGCGGGGATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027459_9

>merge|NZ_CP027459|9|5186166-5186249|CRISPRCasFinder
GTTCCCCGCGCCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAA

>NZ_CP027459|9|8|5186166-5186249|CRISPRCasFinder
GTTCCCCGCGCCAGCGGGGATAA	ACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTAT
GTTCCCCGCGTCAGCGGGGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_000210878.1\|5180905_5182543_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP027459.1\|WP_001164581.1\|5187803_5189081_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP027459.1\|WP_047087567.1\|5172758_5175515_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP027459.1\|WP_000987944.1\|5197064_5197430_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP027459.1\|WP_001071648.1\|5179886_5180678_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP027459.1\|WP_000581937.1\|5179232_5179481_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP027459.1\|WP_032207611.1\|5199544_5201257_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP027459.1\|WP_032207618.1\|5193089_5193869_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP027459.1\|WP_032207613.1\|5197745_5199545_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP027459.1\|WP_032207625.1\|5176920_5179155_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP027459.1\|WP_000098237.1\|5171186_5172527_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP027459.1\|WP_032207617.1\|5193865_5194726_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP027459.1\|WP_032207621.1\|5185152_5185824_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP027459.1\|WP_000254738.1\|5179480_5179816_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP027459.1\|WP_000059300.1\|5190226_5191681_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP027459.1\|WP_000046800.1\|5175571_5176873_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP027459.1\|WP_032207614.1\|5195465_5195726_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP027459.1\|WP_000036723.1\|5182630_5183929_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP027459.1\|WP_001098105.1\|5191774_5193112_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP027459.1\|WP_047087565.1\|5194873_5195449_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_000210878.1\|5180905_5182543_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP027459.1\|WP_001164581.1\|5187803_5189081_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.41032e-29
NZ_CP027459.1\|WP_047087567.1\|5172758_5175515_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP027459.1\|WP_000987944.1\|5197064_5197430_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP027459.1\|WP_001071648.1\|5179886_5180678_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP027459.1\|WP_000581937.1\|5179232_5179481_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP027459.1\|WP_032207611.1\|5199544_5201257_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP027459.1\|WP_032207618.1\|5193089_5193869_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.20062e-61
NZ_CP027459.1\|WP_032207613.1\|5197745_5199545_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP027459.1\|WP_032207625.1\|5176920_5179155_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP027459.1\|WP_000098237.1\|5171186_5172527_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP027459.1\|WP_032207617.1\|5193865_5194726_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.51177e-87
NZ_CP027459.1\|WP_032207621.1\|5185152_5185824_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.57014e-153
NZ_CP027459.1\|WP_000254738.1\|5179480_5179816_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP027459.1\|WP_000059300.1\|5190226_5191681_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.77396e-83
NZ_CP027459.1\|WP_000046800.1\|5175571_5176873_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP027459.1\|WP_032207614.1\|5195465_5195726_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.03675e-40
NZ_CP027459.1\|WP_000036723.1\|5182630_5183929_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP027459.1\|WP_001098105.1\|5191774_5193112_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
NZ_CP027459.1\|WP_047087565.1\|5194873_5195449_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	2.44347e-85

>NZ_CP027459.1|WP_032207621.1|5185152_5185824_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALELANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP027459.1|WP_000036723.1|5182630_5183929_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP027459.1|WP_000210878.1|5180905_5182543_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP027459.1|WP_001071648.1|5179886_5180678_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP027459.1|WP_000254738.1|5179480_5179816_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP027459.1|WP_000581937.1|5179232_5179481_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP027459.1|WP_032207625.1|5176920_5179155_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVDHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP027459.1|WP_000046800.1|5175571_5176873_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP027459.1|WP_047087567.1|5172758_5175515_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNSANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP027459.1|WP_000098237.1|5171186_5172527_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP027459.1|WP_001164581.1|5187803_5189081_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP027459.1|WP_000059300.1|5190226_5191681_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP027459.1|WP_001098105.1|5191774_5193112_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP027459.1|WP_032207618.1|5193089_5193869_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMGQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP027459.1|WP_032207617.1|5193865_5194726_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRGLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP027459.1|WP_047087565.1|5194873_5195449_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICIISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPSCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP027459.1|WP_032207614.1|5195465_5195726_-|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVEHQMVQRLINACPAGLFSLTSEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP027459.1|WP_000987944.1|5197064_5197430_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP027459.1|WP_032207613.1|5197745_5199545_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQTAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP027459.1|WP_032207611.1|5199544_5201257_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVSTTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: NZ_CP027459_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027459_10

5212663-5212753

TypeI-E

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

1 spacers

cas2,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of NZ_CP027459_10

>merge|NZ_CP027459|10|5212663-5212753|CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTCAATTCGCTGTTTTTTTGCTAACTGCTTGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP027459|10|9|5212663-5212753|CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCAATTCGCTGTTTTTTTGCTAACTGCT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027459.1\|WP_032207611.1\|5199544_5201257_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP027459.1\|WP_000372106.1\|5214123_5215032_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP027459.1\|WP_000517476.1\|5217632_5217944_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP027459.1\|WP_001246104.1\|5217115_5217439_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP027459.1\|WP_032207608.1\|5208345_5208879_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP027459.1\|WP_000206407.1\|5208893_5209967_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP027459.1\|WP_001295182.1\|5220178_5220940_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP027459.1\|WP_000246138.1\|5217962_5218673_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP027459.1\|WP_000490402.1\|5212834_5213872_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP027459.1\|WP_032207613.1\|5197745_5199545_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP027459.1\|WP_000956460.1\|5202329_5202482_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP027459.1\|WP_000281454.1\|5210705_5211356_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP027459.1\|WP_000039841.1\|5201330_5202065_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP027459.1\|WP_032207604.1\|5219148_5220198_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP027459.1\|WP_001219242.1\|5218672_5219152_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP027459.1\|WP_032207606.1\|5209977_5210724_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP027459.1\|WP_001090361.1\|5215033_5216461_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP027459.1\|WP_000063176.1\|5212273_5212567_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP027459.1\|WP_001173673.1\|5216460_5217066_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP027459.1\|WP_106888210.1\|5204657_5205871_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP027459.1\|WP_032207611.1\|5199544_5201257_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP027459.1\|WP_000372106.1\|5214123_5215032_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP027459.1\|WP_000517476.1\|5217632_5217944_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP027459.1\|WP_001246104.1\|5217115_5217439_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP027459.1\|WP_032207608.1\|5208345_5208879_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.15223e-29
NZ_CP027459.1\|WP_000206407.1\|5208893_5209967_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.3804e-147
NZ_CP027459.1\|WP_001295182.1\|5220178_5220940_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP027459.1\|WP_000246138.1\|5217962_5218673_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP027459.1\|WP_000490402.1\|5212834_5213872_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP027459.1\|WP_032207613.1\|5197745_5199545_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP027459.1\|WP_000956460.1\|5202329_5202482_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13
NZ_CP027459.1\|WP_000281454.1\|5210705_5211356_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.4219e-90
NZ_CP027459.1\|WP_000039841.1\|5201330_5202065_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.50395e-137
NZ_CP027459.1\|WP_032207604.1\|5219148_5220198_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP027459.1\|WP_001219242.1\|5218672_5219152_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP027459.1\|WP_032207606.1\|5209977_5210724_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.25986e-47
NZ_CP027459.1\|WP_001090361.1\|5215033_5216461_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP027459.1\|WP_000063176.1\|5212273_5212567_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP027459.1\|WP_001173673.1\|5216460_5217066_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP027459.1\|WP_106888210.1\|5204657_5205871_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.39788e-159

>NZ_CP027459.1|WP_000063176.1|5212273_5212567_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP027459.1|WP_000281454.1|5210705_5211356_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTAPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP027459.1|WP_032207606.1|5209977_5210724_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQIPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP027459.1|WP_000206407.1|5208893_5209967_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDSGSPKTVILGGATRLRVSSQSLKRAWRTSELFEQALAGHIGVRSGRIAREAATILIEKGIEDKKAIEWAVEIADYLGKAKKDKKQKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEKDLALLRKDRMAVDIAMFGRMLAKKPGFNVEAACQVAHAFGVSETIVENDFFTAVDDLRQASEDAGAGHVDETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>NZ_CP027459.1|WP_032207608.1|5208345_5208879_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDEHKVALRKWHEELQDKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMKKGRFTRLLAVKTPDDLLRQLRRAVKLLNGSVNLDSLAEGVFRWCQESDDLLNHYRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP027459.1|WP_106888210.1|5204657_5205871_+|IS3-family-transposase
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSPSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>NZ_CP027459.1|WP_000956460.1|5202329_5202482_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP027459.1|WP_000039841.1|5201330_5202065_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP027459.1|WP_032207611.1|5199544_5201257_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVSTTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP027459.1|WP_032207613.1|5197745_5199545_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQTAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP027459.1|WP_000490402.1|5212834_5213872_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP027459.1|WP_000372106.1|5214123_5215032_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFIHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP027459.1|WP_001090361.1|5215033_5216461_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP027459.1|WP_001173673.1|5216460_5217066_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP027459.1|WP_001246104.1|5217115_5217439_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP027459.1|WP_000517476.1|5217632_5217944_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP027459.1|WP_000246138.1|5217962_5218673_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP027459.1|WP_001219242.1|5218672_5219152_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP027459.1|WP_032207604.1|5219148_5220198_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFVGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP027459.1|WP_001295182.1|5220178_5220940_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027459_6	6.1\|3273829\|42\|NZ_CP027459\|PILER-CR	3273829-3273870	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
NZ_CP027459_3	3.1\|2109556\|40\|NZ_CP027459\|CRISPRCasFinder	2109556-2109595	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP027459_5	5.1\|3250815\|54\|NZ_CP027459\|CRISPRCasFinder	3250815-3250868	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
NZ_CP027459_6	6.2\|3273888\|40\|NZ_CP027459\|PILER-CR	3273888-3273927	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP027459_2	2.1\|1300132\|38\|NZ_CP027459\|CRISPRCasFinder	1300132-1300169	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15004-15060	11	0.807
NZ_CP027459_5	5.1\|3250815\|54\|NZ_CP027459\|CRISPRCasFinder	3250815-3250868	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12104-12160	13	0.772
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3364-3420	15	0.737
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3363-3419	15	0.737
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3363-3419	15	0.737
NZ_CP027459_7	7.1\|3454459\|57\|NZ_CP027459\|CRISPRCasFinder	3454459-3454515	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3363-3419	15	0.737

1. spacer 6.1|3273829|42|NZ_CP027459|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

2. spacer 3.1|2109556|40|NZ_CP027459|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcattcttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
************************ ***************

3. spacer 5.1|3250815|54|NZ_CP027459|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattg	Protospacer
*****************************************************

4. spacer 6.2|3273888|40|NZ_CP027459|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

5. spacer 2.1|1300132|38|NZ_CP027459|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

6. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.807

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggcaatgctgttattgt-	CRISPR spacer
cgggctcgtaggcatgataagacgcgccagcgtcgcatcaggc-acctggtaattgtt	Protospacer
.*..********* ************* *************** *. . ** *****

7. spacer 5.1|3250815|54|NZ_CP027459|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

tggcctacacgct-----gcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
-----tacaaattaattcgcggtattgtaggccggataagcaaagcgcatccggcagta	Protospacer
     **** ..*     ***.* ******************************** *

8. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.772

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggcaatgctgttattgt---	CRISPR spacer
gcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccg-----aacgtcgg	Protospacer
  .************************ **************** .*     * .**

9. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 15, identity: 0.737

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggca-----atgctgttatt	CRISPR spacer
cgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaact---	Protospacer
.*..********* ************* ****************     .*.* ..*

10. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 15, identity: 0.737

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggca-----atgctgttatt	CRISPR spacer
cgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaact---	Protospacer
.*..********* ************* ****************     .*.* ..*

11. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 15, identity: 0.737

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggca-----atgctgttatt	CRISPR spacer
cgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaact---	Protospacer
.*..********* ************* ****************     .*.* ..*

12. spacer 7.1|3454459|57|NZ_CP027459|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 15, identity: 0.737

tgaactcgtaggcctgataagacgcgcgagcgtcgcatcaggca-----atgctgttatt	CRISPR spacer
cgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaact---	Protospacer
.*..********* ************* ****************     .*.* ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

173026 : 229955

Escherichia_phage(44.64%)

transposase,terminase,tRNA,holin,protease,integrase

attL 186337:186353|attR 226956:226972

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003317.1\|173026_174181_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_001090844.1\|174465_175479_+	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_000551818.1\|175505_176624_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_001107171.1\|176734_178009_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_032206354.1\|178026_178647_+	YfgM family protein	NA	NA	NA	NA
WP_001177043.1\|178657_179836_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_000249410.1\|179953_181426_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_001297332.1\|181494_181710_+	hypothetical protein	NA	NA	NA	NA
WP_047087547.1\|181706_183077_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	2.6e-41	35.0
WP_032206389.1\|183238_184705_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.8e-88	38.9
WP_000138282.1\|184773_186351_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
186337:186353	attL	NA	NA	NA	NA
WP_000954572.1\|186543_187794_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	3.6e-239	99.5
WP_023909811.1\|187797_187992_-	DUF1382 family protein	A0A0F6R7M7	Escherichia_coli_O157_typing_phage	5.7e-27	98.4
WP_052905337.1\|187988_188639_-	adenine methylase	G9L699	Escherichia_phage	2.1e-126	97.7
WP_001341620.1\|188631_188883_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	5.2e-41	98.8
WP_000675390.1\|189040_189289_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_106888198.1\|189338_190220_-	recombinase RecT	G9L6A2	Escherichia_phage	8.3e-158	98.0
WP_097499607.1\|190216_191038_-	exodeoxyribonuclease VIII	G9L6A3	Escherichia_phage	1.4e-159	97.4
WP_088375643.1\|191034_191241_-	MarR family transcriptional regulator	A0A173GC36	Salmonella_phage	3.3e-17	84.0
WP_001102257.1\|191237_191537_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	3.4e-47	100.0
WP_023278010.1\|191845_192430_-	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	2.7e-104	99.5
WP_001282459.1\|192584_192815_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000402895.1\|192965_193166_+	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	2.1e-32	100.0
WP_106913915.1\|193181_193991_+	primosomal protein	Q286X4	Escherichia_phage	1.0e-117	92.4
WP_059278296.1\|193987_194773_+	replication protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	6.1e-152	99.6
WP_106888200.1\|194890_195235_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	3.4e-59	95.6
WP_106888201.1\|195296_195860_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	1.6e-50	91.1
WP_106888202.1\|195856_196162_+	hypothetical protein	A0A088CQ13	Enterobacteria_phage	2.3e-43	89.9
WP_106888203.1\|196148_196871_+	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	6.7e-81	69.7
WP_000403779.1\|196848_197205_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.3e-57	95.8
WP_000063625.1\|197253_197466_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	1.4e-31	87.1
WP_106888204.1\|197501_197999_+	hypothetical protein	A0A0N7C063	Escherichia_phage	5.9e-36	54.7
WP_106888205.1\|197958_198174_+	hypothetical protein	A0A0N7C076	Escherichia_phage	3.9e-37	98.6
WP_001142590.1\|198175_198394_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.5e-33	100.0
WP_000212746.1\|198395_198683_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	9.2e-50	100.0
WP_097411275.1\|199576_199915_+	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	1.1e-57	98.2
WP_001124396.1\|199932_200145_+	hypothetical protein	Q7Y4V0	Enterobacteria_phage	2.1e-14	52.2
WP_001090120.1\|200141_200816_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	9.0e-120	100.0
WP_106888207.1\|200812_202288_+\|terminase	terminase	A0A0F6TK57	Escherichia_coli_O157_typing_phage	1.7e-296	99.4
WP_074554701.1\|202378_202756_-	hypothetical protein	Q716B1	Shigella_phage	1.1e-45	78.9
WP_000335899.1\|203458_203665_+	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_016236151.1\|203679_205359_+	hypothetical protein	G9L6C2	Escherichia_phage	1.4e-302	99.3
WP_000133160.1\|205355_205652_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_001460331.1\|205654_206350_+\|protease	protease	G9L6C4	Escherichia_phage	1.8e-94	99.6
WP_106888208.1\|206364_207351_+	hypothetical protein	A0A0F6TJQ9	Escherichia_coli_O157_typing_phage	7.3e-187	99.7
WP_088375652.1\|207402_207840_+	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	5.0e-71	95.9
WP_033813652.1\|207850_208186_+	hypothetical protein	G9L6C7	Escherichia_phage	1.7e-55	99.1
WP_021538095.1\|208561_209167_+	hypothetical protein	G9L6C9	Escherichia_phage	4.7e-112	99.5
WP_106888209.1\|210593_210719_-	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	6.0e-06	96.0
WP_106888077.1\|210684_211898_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_106888211.1\|212938_213403_+	hypothetical protein	G9L6D1	Escherichia_phage	9.3e-84	98.1
WP_106888212.1\|213402_213948_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	2.1e-66	76.8
WP_106888213.1\|213947_216461_+	hypothetical protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	0.0e+00	97.7
WP_088375657.1\|216457_218260_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	0.0e+00	97.7
WP_088375658.1\|218265_220740_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	98.8
WP_088375659.1\|220935_221232_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	3.1e-48	98.0
WP_088375660.1\|221263_221521_-	hypothetical protein	G9L6E3	Escherichia_phage	1.2e-40	95.3
WP_106888214.1\|223857_224871_-	acyltransferase family protein	NA	NA	NA	NA
WP_001275998.1\|225055_225460_+	membrane protein	T1SA79	Salmonella_phage	9.9e-66	100.0
WP_016046623.1\|225446_225755_+\|holin	phage holin family protein	T1SA10	Salmonella_phage	2.6e-50	100.0
WP_088375662.1\|225744_226374_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	5.1e-109	91.4
WP_106888215.1\|226370_226868_+	DUF2514 family protein	A0A193GYU6	Enterobacter_phage	2.0e-39	59.0
WP_047087546.1\|227064_227604_-	DUF5384 family protein	G9L6F0	Escherichia_phage	1.7e-41	92.2
226956:226972	attR	NA	NA	NA	NA
WP_047087545.1\|227619_228132_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.2e-60	98.2
WP_106888098.1\|228265_229539_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_001344399.1\|229781_229955_-	DUF2633 family protein	G9L6F2	Escherichia_phage	6.8e-24	100.0

DBSCAN-SWA_2

375023 : 467319

102

Escherichia_phage(48.05%)

transposase,capsid,portal,bacteriocin,terminase,tRNA,lysis,holin,protease,tail,integrase

attL 374805:374829|attR 435522:435546

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
374805:374829	attL	NA	NA	NA	NA
WP_001218308.1\|375023_376193_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.7e-230	100.0
WP_000453637.1\|376176_376359_-	helix-turn-helix domain-containing protein	A0A2R2Z2X2	Escherichia_phage	4.1e-27	100.0
WP_000994801.1\|376437_376806_-	DUF1627 domain-containing protein	A0A0P0ZCA9	Stx2-converting_phage	8.8e-53	100.0
WP_106898674.1\|376841_377000_-	DUF1382 family protein	A0A2R2X2A7	Escherichia_phage	1.1e-20	98.1
WP_000163445.1\|377008_377641_-	adenine methylase	Q08J66	Stx2-converting_phage	3.3e-124	100.0
WP_000669287.1\|377867_378035_-	hypothetical protein	A0A0P0ZCR2	Stx2-converting_phage	2.9e-27	100.0
WP_000203836.1\|378077_378701_-	phage antirepressor Ant	A0A0P0ZAZ7	Stx2-converting_phage	1.7e-112	100.0
WP_000951706.1\|380168_380378_-	hypothetical protein	A0A077SL56	Escherichia_phage	4.2e-36	100.0
WP_000797281.1\|380379_380568_-	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	2.8e-31	100.0
WP_001289935.1\|380719_381493_-	ead/Ea22-like family protein	Q08J58	Stx2-converting_phage	1.0e-143	100.0
WP_000763383.1\|381489_381711_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001447688.1\|381809_382091_-	hypothetical protein	Q08J56	Stx2-converting_phage	6.5e-48	100.0
WP_000548528.1\|382101_382293_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	5.6e-27	100.0
WP_000682304.1\|382265_382448_-	DUF1317 domain-containing protein	A0A0P0ZD61	Stx2-converting_phage	7.4e-29	100.0
WP_000186848.1\|382444_383125_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000100845.1\|383121_383907_-	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	1.1e-148	100.0
WP_000995467.1\|383912_384209_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	3.6e-49	99.0
WP_000372937.1\|384283_384427_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|384395_384560_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_106913917.1\|384632_385001_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
WP_000167585.1\|385151_385622_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	1.1e-87	99.4
WP_000198445.1\|385680_386064_-	hypothetical protein	Q08J47	Stx2-converting_phage	3.9e-64	100.0
WP_000250473.1\|386944_387652_-	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	1.5e-133	100.0
WP_001180318.1\|387730_387958_+	transcriptional regulator	G9L677	Escherichia_phage	7.8e-36	100.0
WP_000438533.1\|388096_388393_+	hypothetical protein	G9L678	Escherichia_phage	2.6e-47	96.9
WP_000062360.1\|388555_389332_+	helix-turn-helix domain-containing protein	A0A0P0ZC04	Stx2-converting_phage	1.9e-137	100.0
WP_001444365.1\|389442_392349_+	replication protein P	A0A0P0ZC72	Stx2-converting_phage	0.0e+00	100.0
WP_001036036.1\|392349_392619_+	hypothetical protein	A0A0P0ZCF7	Stx2-converting_phage	4.9e-45	100.0
WP_000103679.1\|392704_392920_+	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	1.3e-32	100.0
WP_001281772.1\|392930_393167_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
WP_000814576.1\|393123_393570_+	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
WP_000153280.1\|393566_394094_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_001254256.1\|394090_394273_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000211423.1\|394547_395282_+	phage antirepressor Ant	A0A0N7C203	Escherichia_phage	5.5e-123	99.6
WP_001004009.1\|395356_396079_+	DNA-binding protein	A0A0P0ZBS6	Stx2-converting_phage	1.3e-129	100.0
WP_001107963.1\|396078_396684_+	recombination protein NinG	A0A0P0ZCS9	Stx2-converting_phage	1.7e-98	100.0
WP_032346932.1\|396680_396875_+	protein ninH	G9L694	Escherichia_phage	7.1e-30	98.4
WP_001204862.1\|396867_397302_+	antitermination protein	Q777W5	Enterobacteria_phage	1.8e-81	99.3
WP_000649753.1\|398085_399045_+	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_000738068.1\|399056_399326_+	Shiga toxin Stx2a subunit B	A0A2R2Z326	Escherichia_phage	1.2e-43	100.0
WP_000874499.1\|399812_401750_+	SASA family carbohydrate esterase	A0A1I9LJQ8	Stx_converting_phage	0.0e+00	100.0
WP_000143458.1\|401884_402064_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290212.1\|402104_402377_+	DUF826 domain-containing protein	A0A1I9LJR2	Stx_converting_phage	1.2e-22	100.0
WP_000284506.1\|402453_402669_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_000087461.1\|402673_403207_+	lysozyme	V5USG4	Shigella_phage	7.9e-103	100.0
WP_001056885.1\|403480_404050_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.8e-105	100.0
WP_000455406.1\|404049_404199_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001082654.1\|404206_404671_+\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	5.8e-78	100.0
WP_000738505.1\|404702_404996_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
WP_001086073.1\|405404_406211_+\|terminase	terminase	A0A0P0ZG40	Escherichia_phage	1.3e-133	100.0
WP_000143988.1\|406191_407898_+\|terminase	terminase	A0A2R2Z350	Escherichia_phage	0.0e+00	100.0
WP_000787034.1\|407897_410042_+\|portal	portal protein	A0A0P0ZG74	Escherichia_phage	0.0e+00	100.0
WP_106913918.1\|410199_411195_+	hypothetical protein	A0A2R2Z355	Escherichia_phage	1.5e-171	100.0
WP_085972493.1\|411165_412439_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_000214474.1\|412566_413781_+\|capsid	N4-gp56 family major capsid protein	A0A2R2Z358	Escherichia_phage	1.3e-233	100.0
WP_001140442.1\|413836_414226_+	hypothetical protein	A0A2R2Z353	Escherichia_phage	9.9e-63	100.0
WP_001290743.1\|414275_414737_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
WP_000829202.1\|414720_415284_+	hypothetical protein	A0A0P0ZGG2	Escherichia_phage	4.1e-102	100.0
WP_000207922.1\|415283_415934_+	hypothetical protein	A0A0P0ZG46	Escherichia_phage	4.6e-121	100.0
WP_001444877.1\|415930_417868_+\|tail	tail fiber protein	A0A1I9LJS9	Stx_converting_phage	3.1e-64	99.3
WP_001023433.1\|417869_418139_+\|tail	phage tail protein	Q9EYE9	Enterobacteria_phage	6.4e-45	98.9
WP_001370566.1\|418278_418458_+	hypothetical protein	A0A2R2Z344	Escherichia_phage	2.8e-28	100.0
WP_001146329.1\|418761_420387_+	hypothetical protein	A0A088CBK0	Shigella_phage	0.0e+00	99.8
WP_000162954.1\|420383_421652_+	host specificity protein J	A0A2L1IV54	Escherichia_phage	2.6e-213	89.5
WP_000455634.1\|421666_421945_+	outer membrane protein	A0A2R2Z367	Escherichia_phage	1.1e-50	100.0
WP_001301884.1\|421950_422568_+	hypothetical protein	A0A2R2Z362	Escherichia_phage	1.1e-121	100.0
WP_000835360.1\|422658_423393_+	Ail/Lom family outer membrane beta-barrel protein	A0A2R2Z365	Escherichia_phage	1.3e-135	100.0
WP_000078907.1\|423625_423766_+	Hok/Gef family protein	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
WP_000035558.1\|423822_424224_+	hypothetical protein	A0A2R2Z359	Escherichia_phage	3.7e-73	100.0
WP_000509481.1\|424317_424974_+	hypothetical protein	A0A2R2Z361	Escherichia_phage	2.4e-109	100.0
WP_000455649.1\|424976_425423_+	hypothetical protein	A0A2R2Z357	Escherichia_phage	6.2e-77	100.0
WP_000540391.1\|425432_425684_+\|bacteriocin	bacteriocin	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
WP_000012449.1\|425694_426960_+	hypothetical protein	A0A1I9LJU3	Stx_converting_phage	9.9e-205	98.8
WP_106913919.1\|427028_435398_+	hypothetical protein	Q08J70	Stx2-converting_phage	0.0e+00	93.5
WP_106482641.1\|435620_436553_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	3.0e-166	99.4
435522:435546	attR	NA	NA	NA	NA
WP_000776768.1\|436846_437602_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_047087732.1\|437783_439052_-	hypothetical protein	NA	NA	NA	NA
WP_021553753.1\|439417_440758_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000030901.1\|441129_441414_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_047087733.1\|441594_442905_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_032205890.1\|442904_445049_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_001195819.1\|445251_445737_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000033328.1\|446420_446984_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_032205889.1\|449727_450480_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_032205888.1\|450495_451005_+	fimbrial protein	NA	NA	NA	NA
WP_000714140.1\|451001_451490_+	fimbrial protein	NA	NA	NA	NA
WP_000844745.1\|451486_452026_+	fimbrial protein	NA	NA	NA	NA
WP_047087734.1\|452027_452882_+	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_000730806.1\|452954_453506_-	endonuclease SmrB	NA	NA	NA	NA
WP_001298774.1\|453671_454604_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_047087735.1\|454638_455724_+	chorismate synthase	A0A291AU41	Pandoravirus	1.6e-89	48.1
WP_032205885.1\|455727_456552_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000447361.1\|456551_457361_+	TSUP family transporter	NA	NA	NA	NA
WP_001089241.1\|457360_457909_+	elongation factor P hydroxylase	NA	NA	NA	NA
WP_032205884.1\|457942_458221_+	YfcL family protein	NA	NA	NA	NA
WP_000683799.1\|458353_460360_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_047087736.1\|460518_461739_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_032205882.1\|462022_463201_+	MFS transporter	NA	NA	NA	NA
WP_047087737.1\|463197_464193_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000699121.1\|464291_465428_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.9e-23	29.1
WP_001289165.1\|465493_466507_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_024226472.1\|466506_467319_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

661741 : 698233

Enterobacteria_phage(47.37%)

transposase,tail,lysis,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000968208.1\|661741_662437_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_032206274.1\|662433_662832_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_032206306.1\|663070_664021_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_000691708.1\|664408_664492_-	protein YohP	NA	NA	NA	NA
WP_032206273.1\|664715_666152_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000079520.1\|666204_666966_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001307896.1\|667095_667674_-	DedA family protein	NA	NA	NA	NA
WP_001295454.1\|667843_668431_+	YIP1 family protein	NA	NA	NA	NA
WP_047088140.1\|668604_669537_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_047088138.1\|669575_671291_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_032206270.1\|671486_673784_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_001130307.1\|673994_674912_+	glycine betaine ABC transporter substrate-binding protein OsmF	NA	NA	NA	NA
WP_032206269.1\|674918_676076_+	glycine betaine ABC transporter permease YehY	NA	NA	NA	NA
WP_032206267.1\|676068_676995_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	6.3e-23	30.3
WP_032206266.1\|676999_677731_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|677711_677819_-	protein YohO	NA	NA	NA	NA
WP_029208472.1\|677878_678580_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.9e-102	99.5
WP_085972493.1\|679138_680411_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_106888219.1\|680448_681662_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.3e-168	99.0
WP_064756364.1\|681699_682197_+	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	5.4e-90	100.0
WP_001254257.1\|682193_682376_+	NinE family protein	A0A0P0ZC71	Stx2-converting_phage	4.3e-29	100.0
WP_032208534.1\|682372_682543_+	protein ninF	K7PMD9	Enterobacterial_phage	1.6e-25	96.4
WP_001028854.1\|683143_683809_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_000750155.1\|684020_684980_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_032160865.1\|685315_685438_+	YlcG family protein	NA	NA	NA	NA
WP_001097238.1\|685452_686142_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_122998106.1\|686325_687069_+	hypothetical protein	NA	NA	NA	NA
WP_000499454.1\|687154_687313_+	DUF3927 family protein	NA	NA	NA	NA
WP_153244796.1\|687505_687649_-	hypothetical protein	H6WZJ8	Escherichia_phage	3.7e-15	97.4
WP_106888220.1\|687746_688902_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-67	44.7
WP_032207041.1\|689615_690077_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	9.2e-76	99.3
WP_032207043.1\|690116_690587_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-81	99.4
WP_000598641.1\|690633_691353_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|691349_693035_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_032207044.1\|693549_693798_+	DinI-like family protein	Q687E4	Enterobacteria_phage	3.4e-32	82.9
WP_001121225.1\|694392_695043_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_000491544.1\|695267_696143_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	9.7e-159	97.9
WP_047087983.1\|696282_696552_-\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	1.6e-43	95.5
WP_106888186.1\|697076_698233_-\|transposase	IS3-like element IS600 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1

DBSCAN-SWA_4

867458 : 925544

Enterobacteria_phage(32.43%)

transposase,capsid,tail,terminase,lysis,holin,head,integrase

attL 858100:858159|attR 916546:917855

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
858100:858159	attL	NA	NA	NA	NA
WP_000533619.1\|867458_868484_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_000096346.1\|868483_868687_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_047088169.1\|871529_871790_+	hypothetical protein	NA	NA	NA	NA
WP_047088170.1\|871856_872135_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.1e-10	49.2
WP_047088173.1\|872136_873153_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.2e-87	47.9
WP_047088175.1\|873194_873560_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.3e-36	62.6
WP_047088177.1\|873568_873982_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-38	50.3
WP_000917749.1\|874205_874403_+	hypothetical protein	Q9MC00	Enterobacteria_phage	3.6e-29	98.5
WP_001490213.1\|876053_876485_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	7.8e-69	99.3
WP_060552899.1\|877055_878906_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.5
WP_000411811.1\|879349_879556_+\|holin	holin	O48430	Enterobacteria_phage	1.8e-31	100.0
WP_000731236.1\|879560_879905_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_047087679.1\|879955_880489_+	lysozyme	A0A0N7KZF9	Stx2-converting_phage	1.6e-100	98.9
WP_106888225.1\|880786_881281_+\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	3.8e-83	99.4
WP_000736096.1\|881277_881502_+	hypothetical protein	NA	NA	NA	NA
WP_032207766.1\|883465_883831_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.3e-64	97.5
WP_106888226.1\|884118_884682_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	4.0e-57	78.7
WP_047087924.1\|886403_888341_+\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	99.4
WP_001063096.1\|888385_888607_+	hypothetical protein	H6WZL1	Escherichia_phage	3.4e-36	100.0
WP_000125988.1\|891133_891460_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|891469_891820_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|891816_892263_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_106888227.1\|892259_892565_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.1e-48	99.0
WP_097746533.1\|892605_893762_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
WP_106888228.1\|893937_894654_+\|tail	phage tail protein	A0A0P0ZD29	Stx2-converting_phage	5.6e-128	98.7
WP_001030063.1\|894659_895034_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001513217.1\|895129_895339_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000807944.1\|898645_898987_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	1.2e-61	98.2
WP_032208657.1\|898986_899685_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	1.8e-131	98.3
WP_047088117.1\|899690_900434_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.2e-144	96.4
WP_122993101.1\|900379_901012_+\|tail	tail assembly protein	A0A0P0ZDX8	Stx2-converting_phage	7.6e-105	98.6
WP_000649829.1\|901202_901730_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_106913923.1\|901863_905343_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	94.6
WP_001230496.1\|905409_906009_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.3e-109	98.5
WP_158707840.1\|906073_907648_+\|tail	phage tail protein	Q9EYE9	Enterobacteria_phage	1.4e-62	97.5
WP_115801847.1\|907754_907844_+	hypothetical protein	NA	NA	NA	NA
WP_000938111.1\|914579_915941_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	4.3e-52	29.6
WP_106918805.1\|918328_918529_+	hypothetical protein	NA	NA	NA	NA
916546:917855	attR	NA	NA	NA	NA
WP_001230532.1\|918596_919196_+	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	4.4e-110	99.0
WP_159031400.1\|919260_920835_+\|tail	phage tail protein	Q9EYE9	Enterobacteria_phage	5.2e-62	96.7
WP_071887496.1\|920960_921692_-	molecular chaperone Tir	NA	NA	NA	NA
WP_106888232.1\|922016_922670_-	type III secretion system effector ADP-ribosyltransferase EspJ	NA	NA	NA	NA
WP_072057402.1\|923805_924264_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	4.0e-55	99.1
WP_085972493.1\|924270_925544_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7

DBSCAN-SWA_5

974875 : 1013796

Enterobacteria_phage(85.37%)

transposase,capsid,portal,tail,terminase,plate,holin,head,integrase

attL 973814:973873|attR 1013903:1014026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
973814:973873	attL	NA	NA	NA	NA
WP_000078920.1\|974875_975016_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
WP_106888220.1\|975321_976477_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-67	44.7
WP_050439343.1\|976474_976735_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_047088266.1\|976777_977887_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	9.0e-202	97.8
WP_032206883.1\|978044_979229_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.1e-221	97.7
WP_000290443.1\|979228_979741_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.7e-92	98.8
WP_000665305.1\|979795_980161_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.4e-55	96.7
WP_001391627.1\|980196_980325_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.5e-15	95.2
WP_106888167.1\|981756_982970_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.7e-167	98.6
WP_000979946.1\|984444_984933_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.8e-85	99.4
WP_000954200.1\|985089_985662_+	serine acetyltransferase	NA	NA	NA	NA
WP_032206512.1\|985705_986284_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.7e-96	89.5
WP_106888235.1\|986283_988287_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	9.2e-96	42.6
WP_047087591.1\|988884_989781_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.3e-153	97.3
WP_000127182.1\|989784_990135_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	7.8e-59	98.3
WP_047087590.1\|990131_990713_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.8e-100	96.9
WP_000356339.1\|990709_991345_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_001342220.1\|991337_991805_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	6.7e-82	94.8
WP_000780555.1\|993845_994253_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.2e-64	95.6
WP_047087588.1\|994249_994642_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	97.7
WP_001342221.1\|994638_994962_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000864901.1\|994964_995165_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000063100.1\|995164_995659_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000632313.1\|995760_996561_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.5
WP_001262679.1\|997683_998520_-\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	5.1e-149	98.9
WP_106888236.1\|998674_999223_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	3.2e-91	97.0
WP_106888237.1\|1000414_1001716_+\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	7.0e-230	97.8
WP_032206507.1\|1001715_1002762_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.9e-201	99.4
WP_000236495.1\|1002776_1003301_-	hypothetical protein	NA	NA	NA	NA
WP_000224220.1\|1003887_1004151_-	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
WP_032206504.1\|1004152_1004572_-	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	4.2e-19	42.6
WP_000211293.1\|1004591_1004906_-	peptide transporter	A0A0A7NPT5	Enterobacteria_phage	3.5e-18	51.9
WP_000686557.1\|1004910_1005870_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	8.4e-180	99.4
WP_047087694.1\|1005946_1008769_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.9
WP_032206502.1\|1008775_1009141_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	2.4e-58	95.0
WP_000153684.1\|1009282_1009528_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.4e-37	91.4
WP_000985145.1\|1009524_1009728_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.3e-26	86.6
WP_000021668.1\|1009814_1009928_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.2e-08	91.9
WP_000514281.1\|1009924_1010167_-	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	4.4e-37	98.8
WP_047087695.1\|1010178_1010457_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.3e-35	82.6
WP_000739029.1\|1010467_1010818_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
WP_000014504.1\|1010839_1011043_-	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_001673482.1\|1011114_1011252_+	hypothetical protein	NA	NA	NA	NA
WP_000786769.1\|1011341_1011746_+	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-23	53.8
WP_000290355.1\|1011761_1012412_+	membrane protein	NA	NA	NA	NA
WP_000865208.1\|1012441_1012789_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_001300279.1\|1012794_1013796_+\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
1013903:1014026	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1043201 : 1104030

Enterobacteria_phage(48.21%)

capsid,portal,tail,terminase,tRNA,holin,head,integrase

attL 1038663:1038678|attR 1108552:1108567

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1038663:1038678	attL	NA	NA	NA	NA
WP_001025342.1\|1043201_1044935_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001300190.1\|1045150_1045717_+	VOC family protein	NA	NA	NA	NA
WP_001185741.1\|1045730_1046477_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214312.1\|1046864_1047965_+	cytochrome c	NA	NA	NA	NA
WP_047087700.1\|1047989_1050419_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564746.1\|1050583_1051555_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|1051551_1052295_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|1052335_1052731_-	hypothetical protein	NA	NA	NA	NA
WP_049768377.1\|1052783_1053554_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_000362001.1\|1053535_1054849_-\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	2.8e-250	97.0
WP_000073102.1\|1054904_1055141_-	excisionase family protein	Q8W657	Enterobacteria_phage	8.4e-41	98.7
WP_001030139.1\|1055149_1055296_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	3.1e-22	95.8
WP_000492057.1\|1055299_1055542_-	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	2.4e-35	92.5
WP_001091864.1\|1055573_1055945_-	DUF5406 family protein	Q8W655	Enterobacteria_phage	3.8e-64	98.4
WP_000566773.1\|1056562_1056955_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	4.7e-36	57.9
WP_000002321.1\|1057141_1057357_-	hypothetical protein	A0A1B5FPB7	Escherichia_phage	1.2e-17	63.4
WP_000312938.1\|1057356_1057716_-	hypothetical protein	A0A1B5FPB3	Escherichia_phage	1.4e-42	73.1
WP_000147365.1\|1057915_1058116_-	hypothetical protein	NA	NA	NA	NA
WP_106913924.1\|1058121_1058814_-	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.9e-40	69.2
WP_000800135.1\|1058958_1059648_-	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.0e-116	87.8
WP_001399865.1\|1059781_1060054_+	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	2.1e-35	89.6
WP_000867909.1\|1060124_1060418_-	hypothetical protein	NA	NA	NA	NA
WP_001435006.1\|1060537_1061245_+	DNA-binding protein	Q8W645	Enterobacteria_phage	1.3e-124	97.4
WP_106913925.1\|1061353_1062016_+	hypothetical protein	Q8W643	Enterobacteria_phage	2.8e-97	82.7
WP_000626792.1\|1062012_1062207_+	hypothetical protein	NA	NA	NA	NA
WP_000621936.1\|1062203_1062437_+	hypothetical protein	A0A1C9II64	Salmonella_phage	9.5e-13	50.0
WP_001247847.1\|1062423_1063317_+	hypothetical protein	C5IHL2	Burkholderia_virus	2.1e-60	45.9
WP_000181080.1\|1063334_1064225_+	ATP-binding protein	Q8W641	Enterobacteria_phage	2.6e-82	63.3
WP_000184331.1\|1064221_1065622_+	replicative DNA helicase	Q8W640	Enterobacteria_phage	5.4e-252	94.8
WP_042353497.1\|1065633_1065876_+	hypothetical protein	Q8W639	Enterobacteria_phage	1.6e-34	97.5
WP_001215507.1\|1065875_1066235_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.3e-36	60.3
WP_000640037.1\|1066243_1066798_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.0e-65	66.9
WP_001382053.1\|1067020_1067218_+	hypothetical protein	S5MQK8	Escherichia_phage	2.3e-28	98.4
WP_000185911.1\|1067368_1068427_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	1.2e-190	90.6
WP_001359877.1\|1068885_1069317_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	3.6e-66	96.5
WP_032362312.1\|1069888_1071742_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.0
WP_000284518.1\|1071891_1072107_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_001041949.1\|1072110_1072902_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_001092913.1\|1073413_1073947_+	lysozyme	G9L6J6	Escherichia_phage	6.9e-99	94.9
WP_012816791.1\|1074465_1074651_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001429103.1\|1075192_1075699_+	DNA-packaging protein	O64316	Escherichia_phage	1.5e-34	47.9
WP_024182572.1\|1075670_1077599_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.8e-261	66.2
WP_000259002.1\|1077582_1077789_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000831776.1\|1077785_1079378_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
WP_047617627.1\|1079367_1080873_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	5.1e-99	53.2
WP_000256824.1\|1080909_1081257_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.8e-23	58.1
WP_000522591.1\|1081314_1082343_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.6e-112	61.0
WP_000201501.1\|1082394_1082778_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001204554.1\|1082770_1083124_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
WP_000974986.1\|1083139_1083673_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.2e-58	66.7
WP_000683079.1\|1083669_1084065_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235112.1\|1084072_1084825_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.6e-133	98.0
WP_000479108.1\|1084838_1085270_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.8e-42	67.3
WP_000533411.1\|1085296_1085710_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	5.1e-41	80.2
WP_047087948.1\|1085690_1088252_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	86.8
WP_000847345.1\|1088248_1088578_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_001152532.1\|1088577_1089276_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.8
WP_000140735.1\|1089280_1090024_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.4e-144	94.3
WP_071790928.1\|1089960_1090593_+\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	5.7e-92	97.1
WP_032362296.1\|1090653_1094133_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_032162956.1\|1094199_1094799_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	3.7e-109	99.0
WP_032362297.1\|1094863_1096177_+\|tail	tail fiber protein	H6WZM9	Escherichia_phage	9.7e-78	98.4
WP_001101700.1\|1096178_1096448_+\|tail	phage tail protein	H6WZN0	Escherichia_phage	1.9e-44	97.8
WP_072097366.1\|1097209_1097845_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.1e-74	91.3
WP_001434995.1\|1097972_1099031_-	T3SS effector EspW	NA	NA	NA	NA
WP_001144084.1\|1099109_1099760_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.1e-37	40.7
WP_001132098.1\|1099943_1100534_+	bfpT-regulated chaperone	NA	NA	NA	NA
WP_099561169.1\|1100520_1100643_-	zinc/iron-chelating domain-containing protein	NA	NA	NA	NA
WP_001217551.1\|1100779_1101028_-	DinI-like family protein	K7PLW4	Enterobacteria_phage	3.8e-36	93.9
WP_000891620.1\|1101381_1101948_-	hydrolase	NA	NA	NA	NA
WP_032207789.1\|1102257_1104030_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
1108552:1108567	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1375008 : 1403901

Escherichia_phage(47.37%)

protease,transposase,holin,integrase

attL 1379113:1379129|attR 1390617:1390633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260840.1\|1375008_1375830_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|1375929_1376013_-	hypothetical protein	NA	NA	NA	NA
WP_000743951.1\|1376105_1376441_-	acid shock protein	NA	NA	NA	NA
WP_001400365.1\|1376837_1378091_-	MFS transporter	NA	NA	NA	NA
WP_001019534.1\|1378197_1379091_+	LysR family transcriptional regulator	NA	NA	NA	NA
1379113:1379129	attL	NA	NA	NA	NA
WP_000225276.1\|1379225_1380446_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919231.1\|1380570_1381266_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_001315626.1\|1381218_1382511_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148710.1\|1382669_1383284_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_032207946.1\|1383326_1384181_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_077744831.1\|1384182_1384737_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.1e-62	57.1
WP_032207949.1\|1384774_1385938_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	1.9e-226	99.5
WP_001452492.1\|1387457_1387826_+	antitermination protein	K7P7B9	Enterobacteria_phage	7.0e-34	64.2
WP_000917764.1\|1388052_1388250_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	98.5
WP_106913927.1\|1388388_1389102_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_106913928.1\|1389911_1391849_+	SASA family carbohydrate esterase	G9L6J1	Escherichia_phage	0.0e+00	99.2
1390617:1390633	attR	NA	NA	NA	NA
WP_000143458.1\|1391984_1392164_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_106913929.1\|1392204_1392477_+	DUF826 domain-containing protein	A0A0P0ZC09	Stx2-converting_phage	6.3e-24	98.9
WP_001072901.1\|1392553_1392769_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_106888077.1\|1393132_1394345_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_096913359.1\|1394311_1394521_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	1.6e-06	69.0
WP_122083109.1\|1394527_1394635_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.8e-09	100.0
WP_001013632.1\|1394679_1394892_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.0e-25	95.4
WP_047088205.1\|1395059_1395338_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_047618481.1\|1395339_1396389_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.6
WP_001217436.1\|1396401_1396773_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_032206343.1\|1397287_1398106_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001303877.1\|1398392_1398632_+	hypothetical protein	Q9MC00	Enterobacteria_phage	7.7e-18	98.0
WP_096913342.1\|1399040_1399439_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_106888076.1\|1400205_1402059_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.8
WP_106888077.1\|1402687_1403901_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3

DBSCAN-SWA_8

1623253 : 1867927

248

Escherichia_phage(44.7%)

transposase,capsid,portal,terminase,tRNA,holin,lysis,tail,protease,head,integrase

attL 1792542:1792564|attR 1804133:1804155

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106888085.1\|1623253_1624409_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.4e-67	44.7
WP_001365271.1\|1625450_1626992_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_032206830.1\|1627139_1628201_-	TIGR01620 family protein	NA	NA	NA	NA
WP_032206832.1\|1628197_1629595_-	YcjX family protein	NA	NA	NA	NA
WP_000075378.1\|1629749_1630748_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_032206834.1\|1630858_1631764_-	monomeric porin OmpG	NA	NA	NA	NA
WP_032206836.1\|1631808_1632891_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.6e-23	34.7
WP_000775790.1\|1632904_1633564_-	beta-phosphoglucomutase	NA	NA	NA	NA
WP_001299974.1\|1635824_1636880_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000690242.1\|1636889_1637678_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_047087595.1\|1637695_1638748_-	zinc-binding alcohol dehydrogenase	NA	NA	NA	NA
WP_032206838.1\|1638778_1639621_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_032206839.1\|1639607_1640489_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_000597447.1\|1640509_1641802_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000810500.1\|1641815_1643495_-	sugar phosphorylase	NA	NA	NA	NA
WP_000473109.1\|1643706_1644021_-	thiosulfate sulfurtransferase PspE	NA	NA	NA	NA
WP_000907387.1\|1644325_1644685_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_001274963.1\|1644684_1644909_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_000511025.1\|1644962_1645631_-	phage shock protein PspA	NA	NA	NA	NA
WP_047087598.1\|1645797_1646775_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_000069226.1\|1646892_1648158_-	4-aminobutyrate transaminase	A0A1V0SKB7	Klosneuvirus	3.5e-24	27.0
WP_032206842.1\|1648195_1649476_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_047087596.1\|1649477_1650956_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_047087597.1\|1651105_1651663_-	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_001300506.1\|1651689_1652454_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_001298814.1\|1652665_1654084_+	glutamine synthetase	NA	NA	NA	NA
WP_120795382.1\|1654232_1654397_+	protein YmjE	NA	NA	NA	NA
WP_024225995.1\|1654386_1655772_+	putrescine/proton symporter PuuP	NA	NA	NA	NA
WP_001015110.1\|1655905_1656151_+	YmjA family protein	NA	NA	NA	NA
WP_001250213.1\|1656463_1658107_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_000583277.1\|1658103_1659069_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_106913932.1\|1663189_1664346_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888078.1\|1665813_1666969_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_032208661.1\|1666980_1667526_+	2-oxo-tetronate isomerase	NA	NA	NA	NA
WP_032208663.1\|1667569_1669615_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_000636571.1\|1669751_1670498_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_032208665.1\|1670586_1671273_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_047088181.1\|1671450_1671654_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.0e-10	53.7
WP_047088180.1\|1671689_1673150_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	1.1e-42	30.1
WP_041520817.1\|1673238_1674522_-	MHS family MFS transporter	NA	NA	NA	NA
WP_016241229.1\|1674581_1674896_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_001121225.1\|1675490_1676141_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_000491544.1\|1676365_1677241_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	9.7e-159	97.9
WP_047087983.1\|1677380_1677650_-\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	1.6e-43	95.5
WP_106888086.1\|1677651_1678974_-\|tail	phage tail protein	Q687E6	Enterobacteria_phage	7.0e-76	98.9
WP_001230472.1\|1679038_1679638_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	3.7e-109	98.0
WP_106913933.1\|1679704_1683184_-	host specificity protein J	A0A0P0ZDT4	Stx2-converting_phage	0.0e+00	98.1
WP_148936170.1\|1683424_1684054_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.7e-109	98.6
WP_047087946.1\|1683999_1684743_-\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	5.4e-150	99.2
WP_001365123.1\|1684753_1685452_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	1.8e-131	98.7
WP_000847298.1\|1685451_1685781_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000533440.1\|1688371_1688785_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479045.1\|1688811_1689234_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000235098.1\|1689247_1690000_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.9e-135	99.2
WP_047088190.1\|1690007_1690403_-	hypothetical protein	A0A0K2FIF4	Enterobacteria_phage	8.2e-65	91.6
WP_000975099.1\|1690399_1690978_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_047088187.1\|1690989_1691343_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	7.6e-62	99.1
WP_000158897.1\|1691354_1691750_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.9
WP_000063258.1\|1691791_1692817_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_047088185.1\|1692872_1693205_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.3e-54	97.3
WP_033805059.1\|1693214_1694534_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.2e-231	97.7
WP_001415980.1\|1694514_1696116_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.3e-307	98.5
WP_000198153.1\|1696112_1696319_-\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_047088184.1\|1696315_1698241_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.0
WP_000867498.1\|1698215_1698761_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	9.6e-80	83.3
WP_001329960.1\|1699147_1699333_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
WP_000347013.1\|1699465_1699606_-	hypothetical protein	NA	NA	NA	NA
WP_001082561.1\|1699956_1700424_-\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	2.8e-56	77.4
WP_001092861.1\|1700722_1701256_-	lysozyme	Q6H9V6	Enterobacteria_phage	5.3e-99	94.9
WP_024231374.1\|1701298_1701856_-	hypothetical protein	Q08JA0	Stx2-converting_phage	7.8e-53	84.6
WP_000284516.1\|1701859_1702075_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	97.2
WP_106888088.1\|1702224_1704078_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.9
WP_000301787.1\|1704883_1705597_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_074433665.1\|1705731_1705929_-	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	1.4e-25	93.8
WP_047087676.1\|1706710_1707070_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-39	65.2
WP_106888090.1\|1707082_1708132_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.3e-109	54.9
WP_032147304.1\|1708133_1708412_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1708478_1708730_-	hypothetical protein	NA	NA	NA	NA
WP_000882662.1\|1708946_1709159_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_047087674.1\|1709659_1710757_+	beta family protein	A0A0U2S621	Escherichia_phage	2.8e-211	99.5
WP_001204666.1\|1710716_1711295_-	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	2.6e-104	100.0
WP_001002672.1\|1711600_1711912_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.1e-59	97.1
WP_000004322.1\|1711904_1712159_-	hypothetical protein	A0A0U2RK51	Escherichia_phage	4.8e-42	94.0
WP_136757765.1\|1712619_1713585_-	hypothetical protein	U5P0A0	Shigella_phage	2.2e-58	63.3
WP_000705376.1\|1713565_1714087_-	hypothetical protein	NA	NA	NA	NA
WP_000921592.1\|1714070_1714298_-	transcriptional regulator	NA	NA	NA	NA
WP_000381213.1\|1714378_1714786_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.2e-31	51.9
WP_000379563.1\|1714953_1715106_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000394548.1\|1715117_1715756_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_001133037.1\|1715756_1715966_-	hypothetical protein	NA	NA	NA	NA
WP_000449175.1\|1716529_1716718_+	cell division inhibitor	NA	NA	NA	NA
WP_047088226.1\|1720278_1721073_-	hypothetical protein	A0A1U9AJA9	Stx1_converting_phage	3.5e-131	95.5
WP_000738505.1\|1721481_1721775_+	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
WP_106888092.1\|1721806_1722271_-\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	3.4e-62	83.8
WP_000455406.1\|1722278_1722428_-	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001056885.1\|1722427_1722997_-	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.8e-105	100.0
WP_106888093.1\|1723271_1723805_-	lysozyme	A0A2R2Z343	Escherichia_phage	5.1e-102	99.4
WP_001072901.1\|1723809_1724025_-\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_001290230.1\|1724102_1724348_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000143458.1\|1724388_1724568_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_106888094.1\|1724704_1726642_-	SASA family carbohydrate esterase	A0A0P0ZGE0	Escherichia_phage	0.0e+00	99.1
WP_000738068.1\|1727127_1727397_-	Shiga toxin Stx2a subunit B	A0A2R2Z326	Escherichia_phage	1.2e-43	100.0
WP_000649753.1\|1727408_1728368_-	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_001356551.1\|1728750_1728903_-	DNA methylase	A0A2R2Z327	Escherichia_phage	4.0e-20	100.0
WP_001204844.1\|1729151_1729586_-	antitermination protein	A0A2R2Z331	Escherichia_phage	5.6e-83	100.0
WP_000144764.1\|1729578_1729773_-	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001187434.1\|1729769_1730333_-	bacteriophage lambda NinG family protein	A0A2R2Z332	Escherichia_phage	4.7e-106	100.0
WP_000402090.1\|1730340_1730790_-	DUF1367 family protein	A0A2R2Z328	Escherichia_phage	1.0e-79	98.0
WP_001193569.1\|1730789_1731761_-	DNA primase	A0A0H4IPK0	Shigella_phage	3.8e-188	96.6
WP_047087940.1\|1731750_1733271_-	DEAD/DEAH box helicase	A0A0N7KZV6	Escherichia_phage	2.3e-304	99.0
WP_032207142.1\|1733264_1733642_-	hypothetical protein	A0A2R2Z329	Escherichia_phage	1.2e-60	99.2
WP_077744819.1\|1733808_1734003_-	hypothetical protein	NA	NA	NA	NA
WP_001240876.1\|1734173_1734377_-	Cro/CI family transcriptional regulator	A0A2R2Z333	Escherichia_phage	2.0e-30	100.0
WP_001056250.1\|1734472_1735186_+	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	6.3e-132	100.0
WP_032207143.1\|1735280_1736750_+	SAM-dependent methyltransferase	A0A2L1IV91	Escherichia_phage	2.7e-286	100.0
WP_032207145.1\|1736746_1737700_+	restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	3.5e-186	99.7
WP_106913935.1\|1738202_1739099_+	hypothetical protein	A0A0P0ZG86	Escherichia_phage	1.5e-98	71.6
WP_000917252.1\|1739169_1739382_+	cell division inhibitor protein	A0A0P0ZGD1	Escherichia_phage	5.8e-33	100.0
WP_000934197.1\|1739393_1739675_+	hypothetical protein	A0A0P0ZGC3	Escherichia_phage	3.0e-45	100.0
WP_047087942.1\|1739695_1739977_+	host nuclease inhibitor GamL	A0A0P0ZFG3	Escherichia_phage	5.5e-47	98.9
WP_000157000.1\|1742153_1742357_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	4.7e-32	100.0
WP_000476217.1\|1742349_1742589_+	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.1e-39	100.0
WP_001303141.1\|1742585_1743533_+	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	1.6e-183	100.0
WP_001301469.1\|1743534_1744041_+	hypothetical protein	A0A0N7C063	Escherichia_phage	4.2e-90	100.0
WP_001301947.1\|1744000_1744216_+	hypothetical protein	A0A0N7C076	Escherichia_phage	7.9e-38	100.0
WP_001142590.1\|1744217_1744436_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.5e-33	100.0
WP_000212746.1\|1744437_1744725_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	9.2e-50	100.0
WP_000206752.1\|1744728_1745352_+	DUF551 domain-containing protein	A0A1I9LJM0	Stx_converting_phage	3.1e-119	100.0
WP_001451754.1\|1745613_1746183_+	hypothetical protein	A0A0N7BS22	Escherichia_phage	7.3e-99	100.0
WP_001302866.1\|1746225_1746531_-	HigA family addiction module antidote protein	A0A0N7BS23	Escherichia_phage	4.4e-50	100.0
WP_001451755.1\|1746619_1746817_-	hypothetical protein	A0A0N7BYR2	Escherichia_phage	4.1e-33	100.0
WP_001260979.1\|1746945_1747203_-	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	4.2e-38	100.0
WP_000211992.1\|1747527_1748205_+	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.3e-123	100.0
WP_000809302.1\|1748260_1748692_+	hypothetical protein	A0A2R2Z303	Escherichia_phage	7.3e-75	100.0
WP_032206818.1\|1748688_1749315_+	adenine methylase	A0A2R2Z304	Escherichia_phage	4.0e-122	99.5
WP_001291843.1\|1749274_1749487_+	DUF1382 family protein	A0A0P0ZGA1	Escherichia_phage	7.1e-31	100.0
WP_001441720.1\|1749522_1749894_+	DUF1627 domain-containing protein	A0A0P0ZH73	Escherichia_phage	9.8e-52	89.4
WP_000497812.1\|1750258_1750510_+	DUF4222 domain-containing protein	G3CFG8	Escherichia_phage	2.9e-39	100.0
WP_001563185.1\|1750563_1750806_+	hypothetical protein	NA	NA	NA	NA
WP_032206827.1\|1750769_1751957_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.6e-119	51.9
WP_047087716.1\|1752133_1753024_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_001128858.1\|1753023_1754016_+	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_000573407.1\|1754017_1754824_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	7.2e-15	28.6
WP_074433631.1\|1754891_1755245_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_000506490.1\|1755612_1756401_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_032206815.1\|1756545_1757673_+	CMD domain-containing protein	NA	NA	NA	NA
WP_000484984.1\|1757740_1759675_+	exoribonuclease II	Q0GXV6	Lactococcus_phage	3.1e-32	27.9
WP_000221855.1\|1759752_1759857_-	hypothetical protein	NA	NA	NA	NA
WP_047087717.1\|1759910_1761896_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_047087718.1\|1762042_1762216_+	hypothetical protein	NA	NA	NA	NA
WP_047087719.1\|1762305_1763055_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_032206812.1\|1763323_1763542_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_001295580.1\|1763667_1763994_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_000176278.1\|1763993_1764731_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_032206811.1\|1764923_1766093_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_000876286.1\|1766099_1766408_-	lipopolysaccharide assembly protein LapA	NA	NA	NA	NA
WP_001256538.1\|1766556_1767321_-	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_001176295.1\|1767490_1768081_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.7e-43	48.9
WP_047087720.1\|1768144_1770820_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_001310756.1\|1770983_1771079_-	hypothetical protein	NA	NA	NA	NA
WP_001297116.1\|1771192_1771360_-	hypothetical protein	NA	NA	NA	NA
WP_001295577.1\|1771362_1771491_-	YmiA family putative membrane protein	NA	NA	NA	NA
WP_032206809.1\|1771821_1772796_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_032206808.1\|1773005_1775603_-	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.0e-86	34.7
WP_001031530.1\|1775982_1776234_+	YciN family protein	NA	NA	NA	NA
WP_032206807.1\|1776269_1777319_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	6.0e-22	32.0
WP_032206806.1\|1777538_1778297_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.2e-07	23.9
WP_001278904.1\|1778293_1778884_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001291216.1\|1778923_1779796_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001295575.1\|1779896_1780517_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_032206803.1\|1780513_1781395_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|1781532_1781577_+	trp operon leader peptide	NA	NA	NA	NA
WP_032206802.1\|1781668_1783231_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763511.1\|1783230_1784826_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_032206824.1\|1784829_1786188_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.0e-37	41.2
WP_000209521.1\|1786199_1787393_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443055.1\|1787392_1788199_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000807651.1\|1788579_1788759_+	general stress protein	NA	NA	NA	NA
WP_047087721.1\|1789390_1789897_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000692020.1\|1790934_1791525_-	protein kinase	NA	NA	NA	NA
1792542:1792564	attL	NA	NA	NA	NA
WP_001023986.1\|1792658_1792928_-\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	4.2e-44	96.6
WP_106888078.1\|1793132_1794288_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_032208325.1\|1794382_1794607_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	5.0e-19	88.7
WP_001302717.1\|1794688_1795003_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_129014757.1\|1795527_1795713_-	hypothetical protein	A0A1U9AJA4	Stx1_converting_phage	4.9e-20	78.7
WP_106888077.1\|1795973_1797186_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_106888096.1\|1797152_1797368_+	excisionase	A0A0N7BTS3	Escherichia_phage	3.6e-06	80.6
WP_047088277.1\|1797345_1798476_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	4.9e-102	50.9
WP_071532495.1\|1798963_1799182_+	hypothetical protein	NA	NA	NA	NA
WP_106888078.1\|1799682_1800839_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888098.1\|1801021_1802295_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_001303943.1\|1802724_1803003_+	hypothetical protein	NA	NA	NA	NA
WP_000938103.1\|1804170_1804740_-	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
1804133:1804155	attR	NA	NA	NA	NA
WP_000935464.1\|1804805_1805444_-	hypothetical protein	A5LH48	Enterobacteria_phage	5.4e-82	76.9
WP_106888099.1\|1805631_1806793_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_047088109.1\|1807697_1809020_+	type III secretion system effector NleA	H6WZN2	Escherichia_phage	1.2e-221	84.1
WP_001023396.1\|1810250_1810520_-\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	3.8e-45	100.0
WP_001007905.1\|1813062_1813413_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|1813422_1813749_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_060552847.1\|1813745_1814267_-\|portal	portal protein	A0A0P0ZCZ4	Stx2-converting_phage	1.5e-74	96.4
WP_097746533.1\|1814340_1815496_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
WP_000737224.1\|1815893_1816532_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_000028540.1\|1816888_1817632_+	UPF0259 family protein	NA	NA	NA	NA
WP_000808667.1\|1817661_1818201_+	septation protein A	NA	NA	NA	NA
WP_032206794.1\|1818305_1818704_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_047088212.1\|1818743_1819463_-	TonB system transport protein TonB	NA	NA	NA	NA
WP_106888102.1\|1819917_1821131_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	7.1e-168	99.0
WP_047087680.1\|1822014_1822566_-	recombinase family protein	G8I4U3	Mycobacterium_phage	1.4e-25	39.0
WP_052846688.1\|1823128_1823806_-	hypothetical protein	NA	NA	NA	NA
WP_000967595.1\|1824157_1824454_+	YciI family protein	NA	NA	NA	NA
WP_001299682.1\|1824753_1826007_+	voltage-gated potassium channel protein	NA	NA	NA	NA
WP_001309467.1\|1826061_1826235_-	YciY family protein	NA	NA	NA	NA
WP_032208505.1\|1826377_1827838_+	cardiolipin synthase	NA	NA	NA	NA
WP_000366959.1\|1827872_1828202_+	YciU family protein	NA	NA	NA	NA
WP_000994905.1\|1828254_1829259_-	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	G3M9Y6	Bacillus_virus	2.3e-15	30.7
WP_032208507.1\|1829255_1830269_-	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	G9BWD6	Planktothrix_phage	9.0e-15	31.7
WP_000979648.1\|1830280_1831189_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_000911112.1\|1831203_1832124_-	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_032208522.1\|1832209_1833841_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_000616554.1\|1834578_1835226_-	NAAT family transporter YchE	NA	NA	NA	NA
WP_000301651.1\|1835702_1838378_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_000068079.1\|1838679_1839297_-	thymidine kinase	A0A0A0YP64	Citrobacter_phage	1.3e-53	53.6
WP_001287378.1\|1839901_1840315_+	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA
WP_000718995.1\|1840457_1841366_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.4e-59	46.8
WP_000193447.1\|1841567_1842581_-	two-component system response regulator RssB	NA	NA	NA	NA
WP_001295622.1\|1842672_1843578_-	patatin-like phospholipase RssA	NA	NA	NA	NA
WP_047087681.1\|1843690_1844149_+	YchJ family protein	NA	NA	NA	NA
WP_000555849.1\|1844198_1845041_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	1.1e-13	47.6
WP_106913936.1\|1845647_1846325_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_000571699.1\|1846324_1847035_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_000702660.1\|1847031_1848570_-	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	6.3e-20	40.8
WP_000032935.1\|1848566_1852310_-	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_000019827.1\|1852825_1854217_-	nitrate transporter NarK	NA	NA	NA	NA
WP_000918073.1\|1854555_1856352_+	nitrate/nitrite two-component system sensor histidine kinase NarX	NA	NA	NA	NA
WP_000070491.1\|1856344_1856995_+	two-component system response regulator NarL	NA	NA	NA	NA
WP_000086217.1\|1856995_1858390_-	inverse autotransporter invasin YchO	NA	NA	NA	NA
WP_001169669.1\|1858574_1858928_+	DsrE/F sulfur relay family protein YchN	NA	NA	NA	NA
WP_001336325.1\|1858971_1859667_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_001146440.1\|1859824_1860055_-	putative cation transport regulator ChaB	NA	NA	NA	NA
WP_001295620.1\|1860324_1861425_+	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA
WP_000170965.1\|1861829_1861937_+	hypothetical protein	NA	NA	NA	NA
WP_000170926.1\|1862365_1862473_+	hypothetical protein	NA	NA	NA	NA
WP_000811065.1\|1862621_1863476_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.3e-46	39.0
WP_001257044.1\|1863511_1864321_-	tetratricopeptide repeat-containing protein	NA	NA	NA	NA
WP_000200378.1\|1864324_1864717_-	SirB family protein	NA	NA	NA	NA
WP_000456467.1\|1864713_1865547_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_024226915.1\|1865546_1866629_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.5e-07	41.6
WP_000173200.1\|1866670_1867927_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA

DBSCAN-SWA_9

1873127 : 1990979

123

Enterobacteria_phage(33.33%)

transposase,portal,terminase,tRNA,holin,protease,tail,integrase

attL 1878278:1878296|attR 1958382:1958400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032208512.1\|1873127_1873712_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_032208514.1\|1873828_1874920_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_047087684.1\|1875687_1878555_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
1878278:1878296	attL	NA	NA	NA	NA
WP_047087685.1\|1878654_1880574_-	PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR	NA	NA	NA	NA
WP_047087686.1\|1880801_1881872_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_000059411.1\|1881882_1882515_+	dihydroxyacetone kinase ADP-binding subunit DhaL	NA	NA	NA	NA
WP_047087687.1\|1882525_1883944_+	dihydroxyacetone kinase subunit DhaM	NA	NA	NA	NA
WP_047087688.1\|1884263_1885961_+	alpha,alpha-trehalase	NA	NA	NA	NA
WP_000615067.1\|1886039_1886480_-	hypothetical protein	NA	NA	NA	NA
WP_000511313.1\|1886657_1886912_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_000020161.1\|1887112_1887847_+	flagellar brake protein	NA	NA	NA	NA
WP_001295616.1\|1887848_1888460_-	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
WP_000051582.1\|1888559_1889474_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
WP_000340206.1\|1889568_1891305_+	potassium/proton antiporter	NA	NA	NA	NA
WP_000197825.1\|1891691_1892762_-	catabolic alanine racemase DadX	NA	NA	NA	NA
WP_001266908.1\|1892771_1894070_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_000190854.1\|1894399_1895932_+	SpoVR family protein	NA	NA	NA	NA
WP_000234823.1\|1895983_1896703_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_000406391.1\|1896923_1898465_+	Na(+)/H(+) antiporter NhaB	NA	NA	NA	NA
WP_000943459.1\|1898610_1899141_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_032208520.1\|1899186_1900455_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-208	82.7
WP_000897378.1\|1900454_1900874_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.9e-38	62.1
WP_106888101.1\|1901101_1902088_+	hemolysin HlyE	NA	NA	NA	NA
WP_000807626.1\|1902362_1902824_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_000284277.1\|1902900_1903560_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_001297679.1\|1903631_1903925_-	hypothetical protein	NA	NA	NA	NA
WP_000695223.1\|1904162_1904564_+	hypothetical protein	NA	NA	NA	NA
WP_001056860.1\|1904671_1905040_-	hypothetical protein	NA	NA	NA	NA
WP_000072536.1\|1905559_1906255_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_000101055.1\|1906278_1907091_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_001185665.1\|1907094_1907361_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_097746533.1\|1907502_1908659_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
WP_085972493.1\|1910693_1911966_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_032141808.1\|1912305_1912416_+	hypothetical protein	NA	NA	NA	NA
WP_001307134.1\|1912948_1913272_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
WP_074433656.1\|1913374_1913527_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.4e-20	98.0
WP_047087952.1\|1914006_1914444_+	acetyltransferase	NA	NA	NA	NA
WP_000361110.1\|1914468_1915053_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001201825.1\|1915551_1916505_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_047088067.1\|1916691_1918176_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_032207501.1\|1918359_1918665_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_136800952.1\|1918721_1919390_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000134810.1\|1919887_1920070_+	general stress protein	NA	NA	NA	NA
WP_001546534.1\|1920148_1920649_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_047088062.1\|1920685_1921192_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_032206875.1\|1921210_1922101_+	manganese catalase family protein	NA	NA	NA	NA
WP_071887470.1\|1922220_1922640_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-68	92.0
WP_106888170.1\|1922720_1923934_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.6e-167	98.6
WP_000067727.1\|1924057_1924273_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_106888103.1\|1924347_1925043_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	7.3e-133	99.1
WP_001207141.1\|1925093_1925528_+	hypothetical protein	A4KWT5	Enterobacteria_phage	6.0e-77	99.3
WP_032207131.1\|1926280_1926553_+	hypothetical protein	A0A0N7C217	Escherichia_phage	9.7e-41	98.9
WP_032207130.1\|1926837_1927287_+	hypothetical protein	I6RSN8	Salmonella_phage	1.3e-69	88.6
WP_047088220.1\|1927482_1927851_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.2e-64	98.4
WP_001198861.1\|1927923_1928088_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000372937.1\|1928056_1928200_+	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_000995409.1\|1928275_1928572_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_001438244.1\|1928577_1929363_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	1.4e-148	99.6
WP_032207488.1\|1929359_1930040_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	7.9e-132	99.1
WP_000682319.1\|1930036_1930198_+	DUF1317 family protein	A0A0P0ZAS9	Stx2-converting_phage	9.1e-23	100.0
WP_047088208.1\|1930190_1930748_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	3.9e-60	61.7
WP_001386642.1\|1930758_1931040_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000763385.1\|1931138_1931357_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_032207484.1\|1931404_1931605_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.2e-33	98.5
WP_085972493.1\|1931648_1932921_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_000088653.1\|1933119_1933356_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|1933345_1934488_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_032206978.1\|1934589_1935840_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-22	98.1
WP_032206979.1\|1936011_1936665_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|1936674_1937136_+	phosphatase NudJ	NA	NA	NA	NA
WP_032206981.1\|1937189_1938296_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001297479.1\|1938331_1938973_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_047087388.1\|1938976_1940347_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	9.4e-108	44.9
WP_001265481.1\|1940515_1941187_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735412.1\|1941186_1942647_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001295435.1\|1942722_1943844_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000359446.1\|1943892_1945119_-	peptidase T	NA	NA	NA	NA
WP_032206984.1\|1945368_1946505_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000799400.1\|1946488_1947352_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_047088273.1\|1949026_1950388_+	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	1.5e-49	40.2
WP_001023445.1\|1950842_1951112_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.1e-43	97.8
WP_106913937.1\|1951113_1952427_-\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	3.7e-77	98.4
WP_106888078.1\|1953107_1954263_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888169.1\|1954424_1957904_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	94.1
WP_122993104.1\|1958149_1958782_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.4e-105	93.8
1958382:1958400	attR	NA	NA	NA	NA
WP_106888107.1\|1960210_1960783_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.3e-103	97.2
WP_106888108.1\|1960788_1961487_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	5.2e-131	97.8
WP_000847298.1\|1961486_1961816_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_021351599.1\|1961812_1964458_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.9
WP_000532075.1\|1964501_1964810_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
WP_106913938.1\|1964836_1965250_-\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	6.4e-68	95.7
WP_047087667.1\|1965265_1966015_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	5.6e-131	94.8
WP_047087668.1\|1966022_1966421_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	1.1e-69	98.5
WP_000974958.1\|1966433_1967057_-\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	8.9e-106	100.0
WP_001281346.1\|1967059_1967341_-	DNA breaking-rejoining protein	S5MDP9	Escherichia_phage	7.9e-46	97.8
WP_001097065.1\|1967333_1967660_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_122993092.1\|1967747_1969727_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	98.6
WP_047087669.1\|1969716_1971219_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	8.5e-288	99.4
WP_139840281.1\|1971218_1971431_-	hypothetical protein	S5MBY8	Escherichia_phage	3.3e-28	97.1
WP_001077625.1\|1971427_1973551_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000373407.1\|1973547_1974024_-	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_032207063.1\|1974443_1974668_-	hypothetical protein	NA	NA	NA	NA
WP_012816791.1\|1974753_1974939_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_032207060.1\|1975456_1975993_-	lysozyme	G9L6J6	Escherichia_phage	4.5e-98	94.9
WP_074433498.1\|1976029_1977019_-	YdfR family protein	Q08JA0	Stx2-converting_phage	7.5e-107	64.1
WP_000284518.1\|1977023_1977239_-\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_001290231.1\|1977315_1977588_-	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000143458.1\|1977628_1977808_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_106913939.1\|1977944_1979891_-	DUF1737 domain-containing protein	Q9EYC8	Enterobacteria_phage	0.0e+00	97.8
WP_047087938.1\|1980773_1981595_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.8e-77	57.9
WP_032207210.1\|1981591_1981966_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	64.5
WP_032206341.1\|1983028_1983301_-	hypothetical protein	S4TNP0	Salmonella_phage	5.5e-12	51.5
WP_032206337.1\|1983422_1983767_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	1.4e-55	98.2
WP_000887477.1\|1983886_1984099_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_001278450.1\|1984287_1984392_-	hypothetical protein	NA	NA	NA	NA
WP_001118161.1\|1985149_1985545_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.0e-30	51.4
WP_032206335.1\|1985560_1986286_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.0e-77	63.2
WP_032206334.1\|1986307_1987054_-	ATP-binding protein	A0A088CBP4	Shigella_phage	1.1e-113	83.2
WP_106913940.1\|1987060_1988131_-	phage replisome organizer	A0A088CD36	Shigella_phage	3.2e-63	65.2
WP_000693928.1\|1988202_1988628_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000711018.1\|1988611_1988935_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000948454.1\|1989059_1989536_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_001113310.1\|1990511_1990979_-	DUF2335 domain-containing protein	A0A1B0YZW3	Pseudomonas_phage	4.4e-09	35.0

DBSCAN-SWA_10

2140578 : 2194014

Enterobacteria_phage(36.17%)

transposase,capsid,portal,head,terminase,holin,protease,tail,integrase

attL 2145252:2145311|attR 2193089:2193153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003671.1\|2140578_2141166_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_001186424.1\|2141162_2141870_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000107384.1\|2141888_2143682_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001058323.1\|2143678_2144797_-	hydrogenase 1 small subunit	NA	NA	NA	NA
2145252:2145311	attL	NA	NA	NA	NA
WP_072278860.1\|2145913_2146384_+	EspF protein	NA	NA	NA	NA
WP_001023379.1\|2146509_2146779_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	8.7e-42	95.5
WP_106913942.1\|2146780_2148094_-\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	3.3e-78	99.1
WP_106913943.1\|2148158_2148758_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.4e-108	98.5
WP_047087988.1\|2148825_2152221_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	88.9
WP_000090891.1\|2152281_2152914_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_047087989.1\|2152850_2153594_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_001152619.1\|2153599_2154298_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.3e-133	99.1
WP_000847347.1\|2154297_2154627_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_047087991.1\|2154623_2157185_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.0
WP_000459457.1\|2157177_2157612_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479169.1\|2157593_2158016_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_001342267.1\|2158031_2158772_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.0e-129	98.0
WP_032207007.1\|2158779_2159175_-	hypothetical protein	A0A2R9YJI2	Escherichia_phage	1.3e-65	91.6
WP_000975037.1\|2159171_2159747_-\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	7.5e-51	58.7
WP_001204544.1\|2159761_2160115_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000201528.1\|2160107_2160482_-	hypothetical protein	NA	NA	NA	NA
WP_000522630.1\|2160533_2161562_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.3
WP_000256818.1\|2161619_2161967_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_001254039.1\|2162003_2163509_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_001430223.1\|2163498_2165091_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.1e-184	61.3
WP_000258991.1\|2165087_2165294_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	4.2e-12	60.0
WP_032207005.1\|2165277_2167206_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.1e-262	66.0
WP_000235436.1\|2167177_2167687_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001300236.1\|2168089_2168314_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.9e-19	88.7
WP_012816791.1\|2169237_2169423_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000675931.1\|2169644_2169758_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_001003111.1\|2169978_2170512_-	lysozyme	A0A1U9AJ98	Stx1_converting_phage	1.4e-99	94.9
WP_000138558.1\|2170671_2170944_+	hypothetical protein	NA	NA	NA	NA
WP_000411804.1\|2171199_2171406_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.3e-31	98.5
WP_106913944.1\|2171851_2173702_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.9
WP_001344632.1\|2174144_2174276_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.2e-08	85.7
WP_047088297.1\|2174872_2175694_-	antitermination protein	K7P7B9	Enterobacteria_phage	4.1e-82	61.2
WP_001217410.1\|2175690_2176065_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.1e-33	62.7
WP_106888130.1\|2176077_2177127_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.5e-108	54.0
WP_032207160.1\|2177128_2177407_-	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	45.3
WP_000284536.1\|2177839_2178316_-	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	1.7e-16	33.3
WP_001219082.1\|2178318_2178678_-	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	7.1e-23	50.9
WP_000128514.1\|2178922_2179135_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	9.6e-28	94.3
WP_001278459.1\|2179322_2179427_-	hypothetical protein	NA	NA	NA	NA
WP_032206192.1\|2179536_2180370_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	5.5e-26	65.7
WP_032206194.1\|2180405_2180618_-	hypothetical protein	A0A2R2Z310	Escherichia_phage	1.7e-32	88.6
WP_032206196.1\|2180663_2181023_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	8.0e-59	99.2
WP_047087727.1\|2181076_2181502_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	5.7e-64	91.9
WP_106888131.1\|2181542_2182613_-	phage replisome organizer	A0A088CD36	Shigella_phage	8.5e-64	65.2
WP_000693918.1\|2182684_2183110_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001048459.1\|2183106_2183370_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021568728.1\|2183477_2183978_+	helix-turn-helix transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.8e-16	54.5
WP_000108762.1\|2183995_2184187_+	hypothetical protein	NA	NA	NA	NA
WP_021568727.1\|2184186_2184477_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000367377.1\|2184751_2184904_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.9e-06	53.2
WP_000373334.1\|2185002_2185449_-	hypothetical protein	NA	NA	NA	NA
WP_000413705.1\|2186161_2186350_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001098307.1\|2186346_2186538_+	DUF1482 family protein	NA	NA	NA	NA
WP_099357990.1\|2189174_2189378_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_106888078.1\|2189439_2190595_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888078.1\|2191199_2192356_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888132.1\|2192371_2192947_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.1e-47	54.8
WP_000375138.1\|2193354_2194014_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
2193089:2193153	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2235954 : 2390598

164

Escherichia_phage(33.33%)

transposase,capsid,portal,terminase,tRNA,holin,plate,lysis,tail,protease,head,integrase

attL 2368261:2368277|attR 2391276:2391292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117881.1\|2235954_2237355_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1
WP_000977920.1\|2237956_2239045_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.8e-98	54.3
WP_000462687.1\|2239229_2240420_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_032206222.1\|2240641_2241289_-	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA
WP_001295932.1\|2241315_2241864_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
WP_032206223.1\|2242044_2243892_-	L,D-transpeptidase	NA	NA	NA	NA
WP_047087209.1\|2244152_2248613_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_001295347.1\|2248612_2249317_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288850.1\|2249297_2250620_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001297198.1\|2250616_2251402_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899591.1\|2251537_2252317_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436922.1\|2252293_2253187_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011603.1\|2253340_2254087_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350058.1\|2254083_2254266_-	protein YcaR	NA	NA	NA	NA
WP_032206226.1\|2254317_2255550_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032206228.1\|2255586_2256573_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551270.1\|2256569_2258318_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.5e-57	29.8
WP_001432609.1\|2259688_2260219_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	4.8e-36	62.4
WP_001310454.1\|2260409_2260658_+	transcriptional regulator	A0A2D1GNH1	Pseudomonas_phage	1.3e-28	73.2
WP_000289291.1\|2260659_2262750_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	5.7e-165	45.1
WP_000129790.1\|2262821_2263754_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.2e-69	48.3
WP_000257930.1\|2263756_2263978_+	hypothetical protein	NA	NA	NA	NA
WP_001057199.1\|2263990_2264245_+	hypothetical protein	NA	NA	NA	NA
WP_000739863.1\|2264246_2264528_+	hypothetical protein	I6WB15	Burkholderia_virus	2.8e-11	47.4
WP_000049432.1\|2264524_2264797_+	hypothetical protein	NA	NA	NA	NA
WP_000049304.1\|2264801_2265095_+	hypothetical protein	NA	NA	NA	NA
WP_001129553.1\|2265106_2265637_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	1.9e-48	57.1
WP_000323221.1\|2265734_2266277_+	hypothetical protein	A0A0C4UQZ6	Shigella_phage	2.9e-28	40.0
WP_000564281.1\|2266280_2266814_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	6.9e-67	67.2
WP_000465562.1\|2266813_2267329_+	hypothetical protein	C9DGM0	Escherichia_phage	1.2e-47	55.4
WP_000973021.1\|2267332_2267884_+	DNA-binding protein	NA	NA	NA	NA
WP_000595948.1\|2267880_2268066_+	hypothetical protein	NA	NA	NA	NA
WP_000021231.1\|2268104_2268437_+	hypothetical protein	NA	NA	NA	NA
WP_001086882.1\|2268429_2268627_+	hypothetical protein	NA	NA	NA	NA
WP_000370523.1\|2268616_2268913_+	hypothetical protein	NA	NA	NA	NA
WP_001214359.1\|2268909_2269419_+	gp16 family protein	A0A0C4UQU3	Shigella_phage	2.0e-26	41.9
WP_000852377.1\|2269488_2269914_+	transcriptional regulator	NA	NA	NA	NA
WP_001125304.1\|2269985_2270486_+	lysozyme	B6SD29	Bacteriophage	3.0e-27	42.6
WP_115801859.1\|2270520_2270949_+	endopeptidase	NA	NA	NA	NA
WP_001122255.1\|2270932_2271151_+	hypothetical protein	NA	NA	NA	NA
WP_000342749.1\|2271161_2271389_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_000270158.1\|2271369_2271681_+	DUF2730 family protein	NA	NA	NA	NA
WP_001279083.1\|2271673_2271964_+	hypothetical protein	A0A0C4UR00	Shigella_phage	4.7e-25	63.2
WP_000360582.1\|2271966_2272548_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	5.5e-49	56.8
WP_001057670.1\|2272547_2274212_+	hypothetical protein	A0A0C4UR29	Shigella_phage	2.4e-230	73.2
WP_000532587.1\|2274211_2275801_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	8.5e-169	57.7
WP_000046906.1\|2275784_2277116_+\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	2.7e-152	58.8
WP_000094812.1\|2277237_2277711_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	6.0e-38	53.9
WP_000850817.1\|2277887_2279012_+\|protease	protease	A0A0C4UQU6	Shigella_phage	1.3e-78	47.9
WP_001142982.1\|2279011_2279959_+\|head	head protein	A0A0C4UQR9	Shigella_phage	1.2e-122	67.2
WP_044723557.1\|2280002_2280428_+	hypothetical protein	NA	NA	NA	NA
WP_001104959.1\|2280424_2280844_+	gp436 family protein	A0A0C4UR02	Shigella_phage	1.8e-33	53.6
WP_000627428.1\|2280840_2281401_+	DUF1834 family protein	A0A0C4UQU7	Shigella_phage	1.6e-42	48.3
WP_000848437.1\|2281401_2281647_+	DUF2635 domain-containing protein	C9DGP6	Escherichia_phage	2.8e-07	54.5
WP_000606748.1\|2281643_2283146_+\|tail	tail protein	C9DGP7	Escherichia_phage	1.5e-138	51.5
WP_000015473.1\|2283154_2283520_+\|tail	phage tail protein	C9DGP8	Escherichia_phage	2.0e-25	51.7
WP_000213225.1\|2283534_2284011_+	hypothetical protein	A0A0C4UR03	Shigella_phage	1.0e-21	50.8
WP_000113523.1\|2284137_2286213_+	tape measure protein	A0A0C4UQU8	Shigella_phage	3.7e-71	37.7
WP_000146118.1\|2286199_2287549_+	DMT family permease	C9DGQ2	Escherichia_phage	5.9e-54	33.1
WP_000098808.1\|2287532_2288657_+	hypothetical protein	C9DGQ3	Escherichia_phage	7.7e-92	48.5
WP_000980532.1\|2288646_2289261_+\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	4.7e-51	51.0
WP_000763330.1\|2289253_2289691_+	hypothetical protein	A0A0C4UR04	Shigella_phage	1.9e-38	53.5
WP_001146835.1\|2289690_2290773_+\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	1.1e-98	53.2
WP_000301577.1\|2290763_2291324_+	YmfQ family protein	C9DGQ7	Escherichia_phage	2.3e-44	48.1
WP_062875392.1\|2291323_2292235_+	hypothetical protein	C9DGQ8	Escherichia_phage	1.5e-29	42.2
WP_062875395.1\|2292269_2292791_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	1.7e-46	52.0
WP_074433614.1\|2292870_2293074_-\|tail	phage tail protein	NA	NA	NA	NA
WP_000904930.1\|2293295_2293856_+	recombinase family protein	A0A0C4UR34	Shigella_phage	4.3e-75	75.7
WP_010917876.1\|2293955_2295995_+	sialate O-acetylesterase	S5MDQ7	Escherichia_phage	4.3e-274	79.4
WP_000144787.1\|2296141_2296324_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.3e-09	54.4
WP_001114107.1\|2296359_2296605_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_032164298.1\|2297223_2297409_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000527074.1\|2297377_2298430_+	DNA cytosine methyltransferase	H9C177	Pectobacterium_phage	4.1e-119	63.7
WP_000167336.1\|2299984_2300269_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|2300428_2302102_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|2302212_2302896_-	(d)CMP kinase	NA	NA	NA	NA
WP_001295345.1\|2303068_2303833_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_000445231.1\|2304001_2305285_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057136.1\|2305355_2306444_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.5e-81	46.8
WP_000642849.1\|2306642_2307335_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_001295344.1\|2307464_2309225_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642546.1\|2309630_2310488_+	formate transporter FocA	NA	NA	NA	NA
WP_001292815.1\|2310542_2312825_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-162	41.4
WP_000468308.1\|2313143_2313362_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_047087210.1\|2313443_2314607_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	4.5e-204	99.0
WP_047087211.1\|2314606_2315086_-\|tail	phage tail protein	O64315	Escherichia_phage	2.1e-83	98.7
WP_047087212.1\|2315100_2317548_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	0.0e+00	95.8
WP_000785970.1\|2317540_2317660_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|2317692_2317968_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|2318024_2318543_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_047087213.1\|2318555_2319746_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	6.2e-225	99.7
WP_000257039.1\|2320004_2321348_-	hypothetical protein	NA	NA	NA	NA
WP_032206234.1\|2321629_2322157_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	5.2e-91	96.0
WP_032206237.1\|2324479_2325010_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.9e-101	98.9
WP_032206238.1\|2325002_2325911_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	7.5e-162	99.7
WP_032206239.1\|2325915_2326263_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	5.5e-57	98.3
WP_001093707.1\|2326259_2326895_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	4.1e-114	99.5
WP_047087216.1\|2326978_2327764_+	hypothetical protein	NA	NA	NA	NA
WP_032206240.1\|2327835_2328288_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	3.8e-74	97.3
WP_047087217.1\|2328280_2328748_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	6.7e-82	98.7
WP_001300730.1\|2328710_2328884_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_047087218.1\|2328855_2329281_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7LDJ6	Escherichia_phage	5.2e-65	95.0
WP_032206243.1\|2329268_2329703_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	7.2e-54	87.5
WP_001530534.1\|2329717_2330215_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	9.0e-93	99.4
WP_000123123.1\|2330214_2330496_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_032206246.1\|2330499_2330703_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	4.4e-30	98.5
WP_000988633.1\|2330702_2331212_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_047087220.1\|2331311_2332055_-\|terminase	terminase endonuclease subunit	Q94MK1	Enterobacteria_phage	2.1e-122	100.0
WP_047087221.1\|2332058_2333132_-\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	2.8e-200	99.4
WP_032206252.1\|2333190_2334045_-\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	2.4e-130	95.1
WP_047087222.1\|2334218_2335991_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.5
WP_047087223.1\|2335990_2337025_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	3.5e-200	99.1
WP_106888135.1\|2337507_2338811_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_106888136.1\|2338829_2339729_+	hypothetical protein	Q2P9W7	Enterobacteria_phage	5.5e-133	79.7
WP_047087442.1\|2339802_2340009_-	hypothetical protein	Q2P9X3	Enterobacteria_phage	7.1e-28	88.1
WP_047087441.1\|2340008_2340452_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	6.8e-76	93.2
WP_032208021.1\|2342734_2343010_-	DUF5405 family protein	M1TAP2	Escherichia_phage	2.5e-44	97.8
WP_001113264.1\|2343006_2343231_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001277958.1\|2343230_2343533_-	DUF5405 family protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
WP_032208023.1\|2343532_2343757_-	DUF2732 family protein	S4TP68	Salmonella_phage	8.8e-32	97.3
WP_032208026.1\|2343820_2344321_-	hypothetical protein	M1SV55	Escherichia_phage	3.8e-91	98.8
WP_032208029.1\|2344587_2344794_+	hypothetical protein	NA	NA	NA	NA
WP_032208031.1\|2344796_2345393_-	hypothetical protein	NA	NA	NA	NA
WP_024240191.1\|2345402_2345759_-	hypothetical protein	A0A0F7LDH4	Escherichia_phage	5.1e-50	81.9
WP_024182500.1\|2345862_2346162_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	3.8e-38	79.8
WP_047087439.1\|2346255_2347251_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	2.3e-188	99.1
WP_000067977.1\|2347282_2348080_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_001190367.1\|2348161_2348752_-	NAD(P)H oxidoreductase	NA	NA	NA	NA
WP_032208033.1\|2348851_2349760_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000109295.1\|2351400_2352549_-	MFS transporter	NA	NA	NA	NA
WP_032208034.1\|2352862_2353489_+	hydrolase	NA	NA	NA	NA
WP_047087438.1\|2353523_2354387_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213098.1\|2354388_2355006_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850303.1\|2355016_2357461_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000886683.1\|2357698_2358991_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067756.1\|2359082_2360426_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.6e-80	40.8
WP_001295343.1\|2360436_2361048_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_047087437.1\|2361202_2365270_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|2365404_2365899_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537418.1\|2366443_2367409_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_047087436.1\|2367531_2369298_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.6e-22	24.0
2368261:2368277	attL	NA	NA	NA	NA
WP_001202188.1\|2369298_2371020_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.2
WP_032208045.1\|2371061_2371766_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|2372050_2372269_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_047087435.1\|2373012_2375289_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.4e-166	42.4
WP_000520781.1\|2375319_2375640_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_047087434.1\|2376534_2376816_-	hypothetical protein	NA	NA	NA	NA
WP_000113648.1\|2378473_2378830_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_001145908.1\|2379118_2379559_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	7.8e-56	67.8
WP_000134111.1\|2379558_2379855_-	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
WP_016241300.1\|2379851_2380190_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.5e-30	51.8
WP_122993077.1\|2380186_2381362_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.1e-184	79.9
WP_001475696.1\|2381399_2381957_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.1e-62	64.1
WP_001475695.1\|2382012_2383170_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.6e-137	64.9
WP_001475693.1\|2383466_2383691_-	hypothetical protein	NA	NA	NA	NA
WP_024166342.1\|2383816_2384089_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_047087431.1\|2384099_2384510_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001475690.1\|2384506_2384752_-	hypothetical protein	NA	NA	NA	NA
WP_032208060.1\|2386852_2387152_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_032208062.1\|2387158_2387479_-	hypothetical protein	NA	NA	NA	NA
WP_106918783.1\|2387471_2387798_-	host cell division inhibitor Icd-like protein	A0A1C9IHV9	Salmonella_phage	1.7e-07	55.7
WP_032208063.1\|2388203_2388383_+	hypothetical protein	NA	NA	NA	NA
WP_001206970.1\|2388731_2388941_-	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	2.2e-16	67.9
WP_032208065.1\|2389359_2390598_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-126	52.7
2391276:2391292	attR	NA	NA	NA	NA

DBSCAN-SWA_12

2506479 : 2517095

Enterobacteria_phage(50.0%)

protease,tail,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032208109.1\|2506479_2507178_-\|protease	T3SS effector zinc metalloprotease NleD	NA	NA	NA	NA
WP_000951026.1\|2507408_2508290_-	type III secretion system effector kinase NleH1-1	A5LH48	Enterobacteria_phage	8.6e-147	90.1
WP_072127173.1\|2508458_2508620_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	3.9e-13	72.5
WP_001592261.1\|2509115_2510135_-\|protease	type III secretion system effector zinc metalloprotease NleC	NA	NA	NA	NA
WP_085972493.1\|2510365_2511638_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_060552816.1\|2512644_2512800_-\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	1.1e-17	100.0
WP_106888078.1\|2512827_2513984_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_106888139.1\|2514394_2514610_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	6.5e-32	98.6
WP_033816266.1\|2514752_2515151_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|2515231_2515390_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|2515475_2516219_-	hypothetical protein	NA	NA	NA	NA
WP_001235472.1\|2516471_2517095_-	antitermination protein	K7PM87	Enterobacteria_phage	2.2e-112	98.1

DBSCAN-SWA_13

2733869 : 2772911

Escherichia_phage(41.67%)

protease,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060552810.1\|2733869_2735006_+\|transposase	ISAs1-like element ISEc1 family transposase	NA	NA	NA	NA
WP_047088070.1\|2735447_2737514_+	phage adsorption protein NrfB	NA	NA	NA	NA
WP_047088069.1\|2737500_2740473_+	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_001224569.1\|2740473_2741364_+	DUF4434 family protein	NA	NA	NA	NA
WP_001599523.1\|2741546_2742308_+	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
WP_001201825.1\|2742819_2743773_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_047088067.1\|2743959_2745444_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_032207501.1\|2745627_2745933_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_136800952.1\|2745989_2746658_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_077744828.1\|2746737_2747076_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	3.7e-05	41.9
WP_106888077.1\|2747823_2749036_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_106888146.1\|2749002_2749197_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	3.8e-07	73.0
WP_106888147.1\|2749460_2751311_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.5
WP_047087898.1\|2751804_2752233_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	1.4e-62	96.4
WP_047087897.1\|2752599_2752752_-	DNA methylase	A0A0N7C2V5	Escherichia_phage	1.5e-19	96.0
WP_032207072.1\|2753077_2753998_+	hypothetical protein	A0A1B5FPA3	Escherichia_phage	1.5e-64	86.5
WP_032207073.1\|2754113_2754944_-	molecular chaperone	A0A1B5FPA5	Escherichia_phage	6.7e-117	80.4
WP_032207075.1\|2755086_2755449_-	RusA family crossover junction endodeoxyribonuclease	K7PJW5	Enterobacteria_phage	8.6e-61	98.3
WP_000002243.1\|2755445_2755736_-	DUF1364 domain-containing protein	K7PKV0	Enterobacteria_phage	3.4e-52	100.0
WP_047087894.1\|2755735_2756458_-	DNA-binding protein	A0A0P0ZCB2	Stx2-converting_phage	5.6e-128	98.8
WP_000290552.1\|2756532_2757210_-	phage antirepressor Ant	A0A0P0ZC44	Stx2-converting_phage	1.5e-127	98.7
WP_029784131.1\|2757484_2757646_-	NinE family protein	A0A0N7C1X3	Escherichia_phage	3.4e-25	98.1
WP_000153280.1\|2757662_2758190_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_024219806.1\|2758186_2758627_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	9.1e-81	99.3
WP_047087893.1\|2758700_2758991_-	hypothetical protein	A0A0N6WES4	Escherichia_phage	1.8e-45	97.9
WP_001510925.1\|2758987_2759689_-	replication P family protein	Q6H9X6	Enterobacteria_phage	1.7e-129	99.6
WP_047087890.1\|2759685_2760585_-	replication protein	M1FN81	Enterobacteria_phage	2.9e-174	99.7
WP_032208418.1\|2761924_2762227_-	hypothetical protein	A4KWW1	Enterobacteria_phage	3.3e-42	97.8
WP_000067727.1\|2762368_2762584_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_001302016.1\|2762659_2763355_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_000885926.1\|2763364_2763706_+	DUF3024 domain-containing protein	G9L675	Escherichia_phage	2.5e-62	99.1
WP_032208417.1\|2763773_2764235_+	hypothetical protein	G9L674	Escherichia_phage	3.8e-77	99.3
WP_032207131.1\|2765874_2766147_+	hypothetical protein	A0A0N7C217	Escherichia_phage	9.7e-41	98.9
WP_032207130.1\|2766205_2766655_+	hypothetical protein	I6RSN8	Salmonella_phage	1.3e-69	88.6
WP_047088220.1\|2766850_2767219_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.2e-64	98.4
WP_001198861.1\|2767291_2767456_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000372937.1\|2767424_2767568_+	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_000995409.1\|2767643_2767940_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000100847.1\|2767945_2768731_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186792.1\|2768727_2769408_+	YqaJ viral recombinase family protein	A0A0P0ZCQ7	Stx2-converting_phage	4.6e-132	99.6
WP_071887448.1\|2769398_2769515_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	1.0e-07	84.4
WP_106888149.1\|2769517_2770731_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.6e-167	98.6
WP_106888078.1\|2771039_2772196_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_157911293.1\|2772743_2772911_+	hypothetical protein	A0A088CD23	Shigella_phage	5.8e-20	81.8

DBSCAN-SWA_14

3530711 : 3606438

Vibrio_phage(13.33%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000811566.1\|3530711_3530987_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_001299838.1\|3531103_3532729_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000943982.1\|3532812_3533976_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	8.3e-81	43.8
WP_000101670.1\|3533978_3534617_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|3534626_3535025_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000511955.1\|3535752_3536451_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220137.1\|3536469_3536871_-	DUF2170 family protein	NA	NA	NA	NA
WP_032208299.1\|3536995_3537727_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_047087583.1\|3537907_3540349_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.4e-67	33.1
WP_001177639.1\|3540387_3540813_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|3541017_3542316_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089294.1\|3542419_3542617_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|3542698_3543703_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312488.1\|3543705_3544965_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_000460360.1\|3545050_3546331_-	GTPase HflX	NA	NA	NA	NA
WP_001051883.1\|3546407_3546716_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_032208303.1\|3546801_3547752_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001122503.1\|3547744_3549592_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.4e-60	41.3
WP_000990262.1\|3549601_3550936_-	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_000981977.1\|3550954_3551416_-\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_072097076.1\|3551387_3552935_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_001294219.1\|3552933_3554073_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_010723271.1\|3554055_3554109_-	hypothetical protein	NA	NA	NA	NA
WP_001295188.1\|3554971_3555517_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_000041970.1\|3555611_3556664_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_000934912.1\|3556760_3557729_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_032208306.1\|3557750_3561074_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_032208307.1\|3561224_3562727_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_000004771.1\|3562945_3563923_-	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001192973.1\|3564247_3566056_+	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000829498.1\|3566048_3566783_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_000208757.1\|3566793_3567189_+	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_001299198.1\|3567199_3567559_+	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_001238369.1\|3568844_3569378_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_000118482.1\|3569374_3569692_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_000239596.1\|3569866_3570013_-	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000977757.1\|3570123_3570249_-	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000257278.1\|3570300_3570867_-	elongation factor P	NA	NA	NA	NA
WP_032208308.1\|3570908_3571937_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_032208310.1\|3572326_3573196_+	hypothetical protein	NA	NA	NA	NA
WP_000558209.1\|3573398_3573752_-	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_000729117.1\|3573889_3575536_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_001026276.1\|3575579_3575873_-	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_032208312.1\|3576149_3577406_+	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001267448.1\|3577421_3577898_-	membrane protein FxsA	NA	NA	NA	NA
WP_000069437.1\|3578234_3579671_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_000961959.1\|3579788_3581090_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_000883400.1\|3581205_3581544_+	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_032208314.1\|3581519_3583217_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_032208316.1\|3583253_3583829_+	transcriptional regulator	NA	NA	NA	NA
WP_085947598.1\|3584934_3586097_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_106888166.1\|3586343_3587616_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.7e-175	98.0
WP_001121622.1\|3588467_3590117_+	ShET2/EspL2 family type III secretion system effector toxin	NA	NA	NA	NA
WP_000953023.1\|3590724_3591714_+	type III secretion system effector arginine glycosyltransferase NleB	Q8HAB2	Salmonella_phage	4.9e-98	58.5
WP_047087560.1\|3591762_3592437_+	type III secretion system effector cysteine methyltransferase NleE	NA	NA	NA	NA
WP_047087561.1\|3594311_3603983_+	lymphostatin Efa1/LifA	NA	NA	NA	NA
WP_106888167.1\|3605225_3606438_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.7e-167	98.6

DBSCAN-SWA_15

3684619 : 3733233

Stx2-converting_phage(39.53%)

transposase,capsid,head,terminase,tRNA,lysis,holin,tail,integrase

attL 3719264:3719278|attR 3726776:3726790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000918363.1\|3684619_3686035_-	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
WP_000235516.1\|3686117_3687101_+	quinone oxidoreductase	NA	NA	NA	NA
WP_000891404.1\|3687266_3687509_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_072176623.1\|3687642_3688680_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332258.1\|3688768_3689866_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	8.1e-211	99.2
WP_047087753.1\|3689927_3690176_+	DinI-like family protein	A5LH55	Enterobacteria_phage	1.7e-36	97.6
WP_001143783.1\|3690336_3690978_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	1.3e-107	99.5
WP_072140863.1\|3691059_3691689_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.4e-79	93.5
WP_001118085.1\|3691756_3692338_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.7e-48	54.8
WP_001023445.1\|3692448_3692718_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.1e-43	97.8
WP_106913951.1\|3692719_3694024_-\|tail	phage tail protein	B6DZB7	Enterobacteria_phage	5.7e-70	86.9
WP_106888169.1\|3694753_3698233_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	94.1
WP_122993104.1\|3698478_3699111_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.4e-105	93.8
WP_047088113.1\|3699056_3699800_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	6.8e-145	95.5
WP_047088114.1\|3699810_3700509_-\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	1.4e-131	98.7
WP_000807944.1\|3700508_3700850_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	1.2e-61	98.2
WP_060552897.1\|3700842_3704085_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	92.6
WP_122993099.1\|3704132_3704342_-	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	3.3e-33	98.6
WP_106913952.1\|3704437_3704812_-\|tail	phage tail protein	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
WP_001275477.1\|3704817_3705534_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	1.9e-128	99.2
WP_000133391.1\|3705600_3705945_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|3705941_3706388_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007905.1\|3706384_3706735_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125988.1\|3706744_3707071_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_032274028.1\|3709111_3709333_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	9.9e-36	98.6
WP_047087555.1\|3709377_3711318_-\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	96.6
WP_000562896.1\|3713651_3714575_-\|capsid	phage capsid protein	A0A0R6PHC6	Moraxella_phage	3.4e-13	24.1
WP_001229493.1\|3714737_3715226_-\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	3.5e-25	42.3
WP_001018603.1\|3715353_3715515_-	hypothetical protein	NA	NA	NA	NA
WP_000435078.1\|3715517_3715712_-	hypothetical protein	NA	NA	NA	NA
WP_103951510.1\|3715842_3716082_-	hypothetical protein	NA	NA	NA	NA
WP_044806546.1\|3716369_3718187_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.7e-128	50.4
WP_001261503.1\|3718183_3718483_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000543812.1\|3718489_3718810_-	hypothetical protein	NA	NA	NA	NA
WP_106913953.1\|3718802_3719198_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001156588.1\|3719151_3719334_+	DUF3950 domain-containing protein	NA	NA	NA	NA
3719264:3719278	attL	NA	NA	NA	NA
WP_100036487.1\|3719793_3719925_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	9.7e-07	66.7
WP_044697522.1\|3719983_3720190_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_100036486.1\|3720202_3721438_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	6.3e-63	34.8
WP_024224188.1\|3722730_3723096_-	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	5.4e-63	97.5
WP_000095741.1\|3723137_3723338_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_001283921.1\|3723630_3723888_-	hypothetical protein	A0A0P0ZBT1	Stx2-converting_phage	5.0e-39	100.0
WP_000839224.1\|3723884_3724382_-	DNA-binding protein	A0A0P0ZBU2	Stx2-converting_phage	3.6e-94	100.0
WP_000092313.1\|3724584_3725022_-\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	4.2e-70	96.6
WP_001135289.1\|3725018_3725516_-	lysozyme	A0A0N7KZA0	Stx2-converting_phage	2.4e-90	97.0
WP_000411802.1\|3725515_3725722_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_060552899.1\|3726014_3727865_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.5
3726776:3726790	attR	NA	NA	NA	NA
WP_001490213.1\|3728435_3728867_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	7.8e-69	99.3
WP_047619196.1\|3729056_3729266_-	hypothetical protein	K7PJU3	Enterobacteria_phage	2.7e-19	65.2
WP_106888170.1\|3729369_3730582_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.6e-167	98.6
WP_001014286.1\|3731483_3731672_+	hypothetical protein	G9L660	Escherichia_phage	2.2e-23	92.1
WP_047087994.1\|3731674_3732343_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.5e-61	49.6
WP_001061348.1\|3732342_3732915_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-109	99.5
WP_001093921.1\|3732951_3733233_+	hypothetical protein	K7PGU0	Enterobacteria_phage	4.1e-42	95.7

DBSCAN-SWA_16

4172531 : 4178203

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047087656.1\|4172531_4174865_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	99.1
WP_032207431.1\|4174879_4175200_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_047087655.1\|4175335_4175791_-	hypothetical protein	Q7M298	Enterobacteria_phage	1.4e-63	98.2
WP_060552904.1\|4175783_4176071_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	2.1e-46	94.7
WP_047087654.1\|4176063_4176654_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.5e-59	88.8
WP_001149160.1\|4176650_4176917_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_032207427.1\|4177468_4178203_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	5.2e-129	98.4

DBSCAN-SWA_17

4868553 : 4938284

Acinetobacter_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106888186.1\|4868553_4869710_-\|transposase	IS3-like element IS600 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
WP_047087345.1\|4869771_4869993_-	hypothetical protein	NA	NA	NA	NA
WP_000013149.1\|4870192_4871020_-	2,5-didehydrogluconate reductase DkgA	A0A2H4PQR8	Staphylococcus_phage	7.2e-63	45.2
WP_001058807.1\|4871124_4872288_-	alcohol dehydrogenase	NA	NA	NA	NA
WP_000817717.1\|4872481_4873381_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_032205977.1\|4874220_4875408_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_000527844.1\|4875659_4876394_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_001240712.1\|4876400_4876826_+	TonB system transport protein ExbD	NA	NA	NA	NA
WP_032205976.1\|4877097_4877982_-	NADP(+)-dependent aldehyde reductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.1e-64	46.8
WP_000439331.1\|4878172_4878667_+	TIGR00645 family protein	NA	NA	NA	NA
WP_047087342.1\|4878706_4879747_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_047087340.1\|4879903_4880791_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_001059136.1\|4880909_4881197_+	DUF2623 domain-containing protein	NA	NA	NA	NA
WP_000145410.1\|4881385_4882504_+	hydrogenase 2 small subunit	NA	NA	NA	NA
WP_001081870.1\|4882506_4883493_+	hydrogenase 2 operon protein HybA	NA	NA	NA	NA
WP_000017703.1\|4883482_4884661_+	Ni/Fe-hydrogenase cytochrome b subunit	NA	NA	NA	NA
WP_047087338.1\|4884657_4886361_+	hydrogenase 2 large subunit	NA	NA	NA	NA
WP_032205973.1\|4886360_4886855_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_000134014.1\|4886847_4887336_+	hydrogenase-2 assembly chaperone	NA	NA	NA	NA
WP_032205972.1\|4887328_4887670_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_000334896.1\|4887682_4887931_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
WP_032205971.1\|4888053_4888920_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_001297309.1\|4889124_4890984_+	bifunctional glutathionylspermidine amidase/synthase	NA	NA	NA	NA
WP_077790941.1\|4892822_4893344_-	ATP-binding protein	NA	NA	NA	NA
WP_001076231.1\|4893605_4894319_+	thymidylate kinase	NA	NA	NA	NA
WP_000339512.1\|4894350_4895109_+	hypothetical protein	NA	NA	NA	NA
WP_000896880.1\|4895154_4896504_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_024243873.1\|4896503_4897328_+	hypothetical protein	NA	NA	NA	NA
WP_001298770.1\|4897339_4897900_+	YtfJ family protein	NA	NA	NA	NA
WP_000779665.1\|4897930_4899001_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_032205969.1\|4898997_4900077_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_000248097.1\|4901282_4901531_-	acyl carrier protein	NA	NA	NA	NA
WP_032205968.1\|4901562_4902477_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_072033243.1\|4902473_4904204_-	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_032205967.1\|4904565_4905708_+	DNA-binding protein	NA	NA	NA	NA
WP_001297764.1\|4905714_4906479_-	transcriptional regulator GlcC	NA	NA	NA	NA
WP_000026117.1\|4906728_4908228_+	glycolate oxidase subunit GlcD	NA	NA	NA	NA
WP_000943059.1\|4908227_4909280_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA
WP_001194666.1\|4909290_4910514_+	glycolate oxidase subunit GlcF	NA	NA	NA	NA
WP_032205965.1\|4910518_4910923_+	protein GlcG	NA	NA	NA	NA
WP_032205964.1\|4910944_4913116_+	malate synthase G	NA	NA	NA	NA
WP_032205963.1\|4915638_4920204_+\|protease	lipoprotein metalloprotease SslE	NA	NA	NA	NA
WP_032205962.1\|4920351_4921161_+	prepilin peptidase	NA	NA	NA	NA
WP_001324279.1\|4921226_4921637_+	GspS/AspS pilotin family protein	NA	NA	NA	NA
WP_032205961.1\|4921654_4922614_+	type II secretion system protein GspC	NA	NA	NA	NA
WP_047087336.1\|4924703_4926191_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_047087335.1\|4926190_4927414_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_001087296.1\|4927430_4927886_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_106913965.1\|4928113_4929327_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.1e-167	98.6
WP_000854916.1\|4929638_4930016_-	toxin	NA	NA	NA	NA
WP_097746533.1\|4930174_4931331_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
WP_032207120.1\|4931877_4935969_-\|protease	serine protease autotransporter EspI	Q9LA58	Enterobacterial_phage	6.8e-311	44.6
WP_106888188.1\|4937010_4938284_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.9e-175	98.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027460

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP027459

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection