CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028101	Fusobacterium nucleatum subsp. nucleatum strain 25586 chromosome, complete genome	4 crisprs	WYL,RT,csa3,DEDDh,cas4,DinG,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6,PD-DExK	0	9	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028101_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028101_1

3935-4204

Orphan

Consensus_repeat	Method
ATAGTTCAGCTTTTGGAN	CRT

6 spacers

The CRISPR arrays of NZ_CP028101_1

>merge|NZ_CP028101|1|3935-4204|CRT
AAAGTTCAGCTTTTGGATATGATAATAAAGCCATTGAAAAGGAAAGTTCAGCTTTTGGAACTGGGAATAGAGCTACTGGTGAGTTTAGTTCAGCTTTTGGATTTCATAATATAGCCAGTAAAATACATAGCTCAGCTTTTGGAAGCAATAATGCAGCTGATGGGGTAAATAGTTCAGCTTTTGGATTTAAAAATACAGTTAGTGGATTTAATAGTTCAGCTTTTGGAAGTCAATATCAAGTTACTGGAAACTTTTCTGGTGCTTTTGGAA

>NZ_CP028101|1|1|3935-4204|CRT
AAAGTTCAGCTTTTGGAT	ATGATAATAAAGCCATTGAAAAGG
AAAGTTCAGCTTTTGGAA	CTGGGAATAGAGCTACTGGTGAGT
TTAGTTCAGCTTTTGGAT	TTCATAATATAGCCAGTAAAATAC
ATAGCTCAGCTTTTGGAA	GCAATAATGCAGCTGATGGGGTAA
ATAGTTCAGCTTTTGGAT	TTAAAAATACAGTTAGTGGATTTA
ATAGTTCAGCTTTTGGAA	GTCAATATCAAGTTACTGGAAACT
TTTCTGGTGCTTTTGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028101.1\|WP_011015638.1\|12311_12968_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP028101.1\|WP_025374895.1\|7592_8522_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP028101.1\|WP_011015639.1\|12977_14177_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP028101.1\|WP_005902112.1\|11010_12120_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP028101.1\|WP_011015631.1\|2702_3602_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP028101.1\|WP_029597318.1\|76_940_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|224705
NZ_CP028101.1\|WP_005902101.1\|1103_2279_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP028101.1\|WP_005902111.1\|10547_11009_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP028101.1\|WP_147372973.1\|8536_10141_-\|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|173854
NZ_CP028101.1\|WP_011015633.1\|5282_6017_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP028101.1\|WP_011016343.1\|14356_15838_+\|IS1182-like-element-ISFnu1-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP028101.1\|WP_147372971.1\|6796_7600_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|131837
NZ_CP028101.1\|WP_011015634.1\|6017_6800_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NZ_CP028101.1\|WP_011015638.1\|12311_12968_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	3.48871e-99
NZ_CP028101.1\|WP_025374895.1\|7592_8522_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.2643e-89
NZ_CP028101.1\|WP_011015639.1\|12977_14177_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP028101.1\|WP_005902112.1\|11010_12120_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	7.13674e-116
NZ_CP028101.1\|WP_011015631.1\|2702_3602_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.28665e-09
NZ_CP028101.1\|WP_029597318.1\|76_940_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|224705	COG1792, MreC, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.40644e-60
NZ_CP028101.1\|WP_005902101.1\|1103_2279_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.17797e-18
NZ_CP028101.1\|WP_005902111.1\|10547_11009_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	2.59084e-87
NZ_CP028101.1\|WP_147372973.1\|8536_10141_-\|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein	gnl\|CDD\|173854	cd08489, PBP2_NikA, The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP028101.1\|WP_011015633.1\|5282_6017_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.1028e-96
NZ_CP028101.1\|WP_011016343.1\|14356_15838_+\|IS1182-like-element-ISFnu1-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.24461e-31
NZ_CP028101.1\|WP_147372971.1\|6796_7600_-\|ABC-transporter-permease-subunit	gnl\|CDD\|131837	TIGR02790, Nickel_transport_system_permease_protein_nikC., nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds].	1.52316e-74
NZ_CP028101.1\|WP_011015634.1\|6017_6800_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.20972e-97

>NZ_CP028101.1|WP_011015631.1|2702_3602_+|DMT-family-transporter
MDNHIKGALLVCLAATMWGFDGIALTPRLFSLHVPFVVFILHLLPLILMSILFGKEEFKNIKKLQKNDLFFFFCVALFGGCLGTLCIVKALFLVNFKHLTVVTLLQKLQPIFAIILARLLLKEKLKRAYLFWGFLALLGGYLLTFEFHLPEFVSGDNLLPASLYSLLAAFSFGSATVFGKRILKSASFRTALYLRYLMTSCIMFVIVAFTSGFGDFLVATAENWLIFIIIALTTGSGAILLYYFGLRYITAKVATMCELCFPISSVVFDYLINGNVLSPVQIASAILMIISIIKISKLN
>NZ_CP028101.1|WP_005902101.1|1103_2279_-|MFS-transporter
MKKSIIGLLWGESTLKVMAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSNGQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKIGKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCLVISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQIMSTVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVCIILILKWLKENRNR
>NZ_CP028101.1|WP_029597318.1|76_940_-|rod-shape-determining-protein-MreC
MKKESKIKILLPILAVIIVTVLIFNRLLFKLKAQIDKAVLPIQSKVYNVANRAIGIKDIIFSYENFITENENLKKENMELKIQKVRNEKIYEENERLLKLLEMKENNIYKGDLKFARVSFSDINNLNNKIFIDLGTEDNIKIDMITVYGDYLVGKIVAVHDNYSEVELITNPNCIISAKTMGDVLGIARGSDEEDGLLYFQPSIVEDNLKEGDEIITSGISDIYPEGIKIGKIEQIDEKENYGYKRVTLKPGFESKDLRELIVISRENAVNRPIVKEEVKELKGDEK
>NZ_CP028101.1|WP_011015633.1|5282_6017_-|ABC-transporter-ATP-binding-protein
MKAVELINITKKYEEQEVLNSFSLDIEKGKCLAIMGESGSGKSTIAKIIIGLEKQNLGTVKIFGKERDIKTTFKDIEFLFQDSYNALNPSMIVEDLIYEPLQFLVNTTDKSQKKEIVLELLEQVELSSELLTRKRDELSGGQLQRVCLARALSTKPQIMIFDESLSGLDPLVQDKILDLLYKIQKQYQLTYIFISHDFRLCYFLADRIILIDSGNITEDFKELDKEIIPKTEIGKILLKDISKL
>NZ_CP028101.1|WP_011015634.1|6017_6800_-|ABC-transporter-ATP-binding-protein
MNILEIKNLSLKISDEKILKNINFELKEKEIISIIGKSGSGKTMLSKMIMGLKNKNMQIEGEILFKDNNIFNFSEEDLRKYRGEGIGYITQNPLNVFLPFQKIKTTFLETYFSHKNISKSEVIELAKKNLKQVNLENAEEILNKYPFELSGGMLQRVMVAIIIGLDAKIIIADEVTSALDSYNRYEMIKIFKELNKMGKSIVLITHDYYLMKSISDRCLVMENGEVIEKFNPKLKPELIKEKSEFGAKLLETTIYKRKGS
>NZ_CP028101.1|WP_147372971.1|6796_7600_-|ABC-transporter-permease-subunit
MAKNIKFYFAIFLLFFWIVLAIVAPMVAPYDPQYVDLSLKLLSPNNTYLLGTDALGRDILSRIIYGARLSISISLSIQIILLLISVPIGLFIGWRQGKEESFFDWLTMIFSTFPSFLLAMVLVGMLGAGISNMIISVVAVEWIYYARILKNSVISQKQNEYVKYAILKGMPAGYILKKHIFPFVYGPILTASLMNIGNIILMISSFSFLGIGVQPNISEWGNMIHDSRTFFRNHPNLMLYPGIMILLAVGSFRFIASQIEEKFRGIK
>NZ_CP028101.1|WP_025374895.1|7592_8522_-|ABC-transporter-permease
MKKKIFDIISALLVISILAFIFIQLSPGDPAENYLRASHLPITDELLKQKREELGLNSPLIIQYLKWLKNVLLGNFGYSFLRKEPAIYLTFKSLYATFQLTIFSTFLIILISLPIGILSAIKTGTWIDKIVISITTIFVSMPVFWLGFSLILLFSVKLNWLPVSGRGGFLNFILPSITLSVPFIGQYIEFIKKSILENIQNNLLENAVLRGLKKRYIIFNYLLKGAWIPILSGFSFTFVSILTGSILVEEIFSWPGIGFLFTKAIQAGDVPLIQACIMVFGMLFIIATHFMNGILKYLDPRIKGGKNNG
>NZ_CP028101.1|WP_147372973.1|8536_10141_-|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein
MKKLIKLFLMLTLSLLFLVACGEKGKEETKSEDTQKKTLTISWNQDVGFLNPHAYLPDQFITQGMVYEGLVNYGENGEILPSLAESWEISEDGKTYTFHLRKGVKFSDGSDFNANNVKKNFDSIFLNKERHSWFGLTGHISSYRVVNENTFEFVLDEAYTPTLYDLAMIRPIRFLADAGFPDDGDTYKGIKASIGTGPWILKEHKKDEYAIFEKNPNYWGKKPILDEVVIKIIPDAETRALQFEAGELDMIYGNGLISYDTFKSYQGDSKYKTDISEPMSTRLLMFNTTTGPLGDINLRYALTYATDKKAISEGILNGIEKPADTIFAPNMPHSKQDLKPFEYNLDKAKEYIEKAGYKMGKEFYEKDGKVLTLVFPYIATKTLDKQIAEYIQGQWKKIGVNVEIKALEEKNFWEETDDLKYNVMLNYSWGAPWDPHAYINAMATVAENGNPDYEAQLGLPMKKELDAKIHQVLLEANPEKVEQLYKEILTTLHEQAVYVPLTYQSLIAVYRDNLTGVRFMPQEYELPLSYIDKK
>NZ_CP028101.1|WP_005902111.1|10547_11009_+|6,7-dimethyl-8-ribityllumazine-synthase
MKVFEGKFNGKGTKIAIVAARFNEFITSKLIGGAEDILKRHEVQDDDINLFWVPGAFEIPLIAKKLAQSKKYDAVITLGAVIKGSTPHFDYVCAEVSKGVAHVSLESEVPVIFGVLTTNSIEEAIERAGTKAGNKGADAAMTAIEMINLIKGI
>NZ_CP028101.1|WP_005902112.1|11010_12120_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MDKNSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGIEVELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKVQFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNFNDGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGGSGLISTAFKENIVDAGEIFIAPKIIGDSSAIPFINGFNFDSMEDVFKLPNPKFNIYGDNISIEFENL
>NZ_CP028101.1|WP_011015638.1|12311_12968_+|riboflavin-synthase
MFTGLVEEKGSVISLNNGDKSIKLKIKANKVLENVKLGDSIATNGVCLTVTEFSKDYFVADCMFETISRSNLKRLKAGDEVNLEKSITLATPLGGHLVTGDVDCEGEIVSITQEGVAKIYEIKISRKYMRYIVEKGRATIDGASLTVISLTDDTFSVSLIPHTQEKIILGSKKVGDIVNIETDLVGKYIEKFVYFDKLEQKENKKSKITREFLLENGF
>NZ_CP028101.1|WP_011015639.1|12977_14177_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MIYKIEDVLEDIKNGIPLIIVDDENRENEGDLFVAAEKATYESINLMATFARGLTCTPMTSEYAIRLGLDPMTARNTDAKCTAFTVSVDAKEGTTTGISIADRLTTIKKLANKNSVPSDFTKPGHIFPLIAKDKGVLEREGHTEATVDLCKICGLTPVSVICEILKDDGTMARMDDLEIFAKEHNLKIITIADLIKYRKKTEQLMKIDVVANMPTDSGTFKIVGFDNLIDGKEHIALVKGDVAGKENVTVRIHSECFTGDILGSLRCDCGSQLKTAMRRIDKLGEGIILYLRQEGRGIGLLNKLRAYNLQEEGMDTLDANLHLGFGADMRDYAVAAQMLKALGVKSIKLLTNNPLKINGLEEYGIPVVKREEIEIEANKINKVYLKTKKERMGHLLKIK
>NZ_CP028101.1|WP_011016343.1|14356_15838_+|IS1182-like-element-ISFnu1-family-transposase
MIKPINNNKYFKFFQPKLFYINNDIDNDDPVRLLSAILEEMDFSNLLQVFPNKTKVHPVNMFAVIIYAYSQGKYSTRDIEFLCRDSQRTQYLLNSLNVPSYSTISRFLSKASDIIYELFCQFVEKLFKLSEIPTETIYIDGTKIEAYANKYSFVWKKSTLKYKEKLEENILELIDEFNKYFNKEKELDNIFDIFSYLKKLKIQKIYGRGKRNSKEQLFLEKAQSYVEKFNKYTNYLEILGERNSFSKTDKEATFMRMKEDYMRNGQLKPGYNLQIGVISEYIASYEIFHNPADTKTLIPFLEKTKSQNIEIKNVVADAGYESFPNYEYLEKNNYVSYIKPIYYEKSKTRKYQKNLNRVENLEYDEKENRLFRKDGLELEFQYYGEDGKTIYFKNPETEKIIKYNNEFRRLSKKSKDNIESDLGKQLRMNRSIQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGLFCIAYNFNKYLAKLSRKKQGVVLHPLKTA

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Crispr_ID: NZ_CP028101_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028101_2

812208-812302

Orphan

Consensus_repeat	Method
TATGATGAAAGATGATAAAATGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028101_2

>merge|NZ_CP028101|2|812208-812302|CRISPRCasFinder
TAAAATGAATGATGCTCATATGATGAAAGATGATAAAATGATGATGAATGACAAAGGAATGAAAGACACTATGATGAAAGATGACAAAATGATGA

>NZ_CP028101|2|1|812208-812302|CRISPRCasFinder
TAAAATGAATGATGCTCATATGATGA	AAGATGATAAAATGATGATGAATGACAAAGGAATGAAAGACAC
TATGATGAAAGATGACAAAATGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028101.1\|WP_011016220.1\|819980_820805_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP028101.1\|WP_011016209.1\|804937_805414_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028101.1\|WP_005902691.1\|809358_810675_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NZ_CP028101.1\|WP_005902671.1\|822458_822809_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP028101.1\|WP_011016216.1\|813344_814130_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|227095
NZ_CP028101.1\|WP_011016206.1\|802098_802398_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|223920
NZ_CP028101.1\|WP_011016218.1\|817483_819031_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|173885
NZ_CP028101.1\|WP_005902693.1\|808747_809338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028101.1\|WP_011016210.1\|805548_805893_-\|DUF1667-domain-containing-protein	unknown	unknown	gnl\|CDD\|226380
NZ_CP028101.1\|WP_005902690.1\|810994_811648_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_CP028101.1\|WP_147373084.1\|807169_808600_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223652
NZ_CP028101.1\|WP_011016211.1\|805892_807158_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP028101.1\|WP_023040865.1\|812429_813314_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_CP028101.1\|WP_011016222.1\|822805_823606_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP028101.1\|WP_011016219.1\|819027_819984_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP028101.1\|WP_011016217.1\|815893_817327_+\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP028101.1\|WP_147373082.1\|803478_804933_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP028101.1\|WP_011016207.1\|802481_803462_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP028101.1\|WP_023040869.1\|820801_822469_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP028101.1\|WP_005902683.1\|814116_815775_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519

Protein	Function_ID	Function_description	E-value
NZ_CP028101.1\|WP_011016220.1\|819980_820805_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.87993e-61
NZ_CP028101.1\|WP_005902691.1\|809358_810675_-\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	2.99374e-99
NZ_CP028101.1\|WP_005902671.1\|822458_822809_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.73075e-19
NZ_CP028101.1\|WP_011016216.1\|813344_814130_+\|response-regulator-transcription-factor	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.22808e-84
NZ_CP028101.1\|WP_011016206.1\|802098_802398_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	4.39535e-25
NZ_CP028101.1\|WP_011016218.1\|817483_819031_+\|DNA-binding-protein	gnl\|CDD\|173885	cd08520, PBP2_NikA_DppA_OppA_like_21, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP028101.1\|WP_011016222.1\|822805_823606_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.11928e-18
NZ_CP028101.1\|WP_011016210.1\|805548_805893_-\|DUF1667-domain-containing-protein	gnl\|CDD\|226380	COG3862, COG3862, Uncharacterized protein with conserved CXXC pairs [Function unknown].	1.70545e-54
NZ_CP028101.1\|WP_005902690.1\|810994_811648_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	2.72569e-43
NZ_CP028101.1\|WP_147373084.1\|807169_808600_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223652	COG0579, COG0579, Predicted dehydrogenase [General function prediction only].	1.19068e-141
NZ_CP028101.1\|WP_011016211.1\|805892_807158_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	1.53849e-26
NZ_CP028101.1\|WP_023040865.1\|812429_813314_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	2.83646e-160
NZ_CP028101.1\|WP_011016219.1\|819027_819984_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.31784e-87
NZ_CP028101.1\|WP_011016217.1\|815893_817327_+\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.80294e-139
NZ_CP028101.1\|WP_147373082.1\|803478_804933_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.48616e-17
NZ_CP028101.1\|WP_011016207.1\|802481_803462_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	4.84124e-30
NZ_CP028101.1\|WP_023040869.1\|820801_822469_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP028101.1\|WP_005902683.1\|814116_815775_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.40891e-81

>NZ_CP028101.1|WP_005902690.1|810994_811648_+|cytochrome-c-biogenesis-protein-CcdA
MLNTELFIGAVYVAGLLSFFSPCIFPLLPVYIGMLSTSGKKSIIKTLVFVIGLSTSFVLLGFGAGSIGSFLISKTFRIISGVIVIIFGIIQMEIVKIPFLERTKLVDIKGKEDDSIWGAFLLGFTFSLGWTPCVGPILASILFISSGGGNPYYGALMMFIYVLGLATPFVILSLSSKYVLTKVSAIKKHLGIMKKIGGLLIIIMGILLLTDKLSIFL
>NZ_CP028101.1|WP_005902691.1|809358_810675_-|AAA-family-ATPase
MQLLKVQIKNWQTFTDVSLECKDFLVFIGASSTGKSSFMKALLYFFQARNLHDGDIRNPNLPLEIIITLKGEKGHIFQLRILNNPYQSIRYFIKNHISKPEKNNRNWEEIEEKDFKKQVSEISIFYVPAFMKASYLDYLVEKLFQNENLKKYYKHYKRFKNSINKKMSFGYYRHIFIEFLQEIIIKEKSHAFWKNSILLWEEPEFYLNPQQERACYDALLQNTKLGLMAVVSTNSSRFIELENYQSLCIFRRIKEDVEIYQYNGNLFSGDEVTVFNMNYWINPDRSEIFFAKKVILVEGQTDKIVLSYLAKNLGIFNYDYSIVECGSKSSIPQFIRLLNAFHIPYVVVYDKDNHYWRNETELENSTLKNKMIQNLIWKKLGEWVEFENDIEEEIYDESRDKKNYKNKPFYALETVINSNYIVPKRLEEKVRKIFEEIK
>NZ_CP028101.1|WP_005902693.1|808747_809338_-|hypothetical-protein
MAIQINLEKYGHKKKGYLNFSWTSLFFNFLVPLFRLDIKWVFIFISPYLFLYIMTFGVIDSSQFFILTLPHLSIFPTFILLLDYYHSINHLNTSVFVMIILIPILRVIFSFIYNDFYTKNLLKEGYLPPEDDEYSNAILKGNRFLEYTKEDLLDKEKMERYRLIIEEYEQERKKDLINFVLIVILLILLIILLVYI
>NZ_CP028101.1|WP_147373084.1|807169_808600_-|NAD(P)/FAD-dependent-oxidoreductase
MFDVVVIGAGIMGAAVSRELSKYELKILLLDKENDVSCGTTKANSAIVHAGYDAKEGSLMAKYNVLGNAMYEDLCKEVDAPFRRVGSYVLAFSEKEKEHLEMLYQRGVNNGVPEMEIIDAAEIQKREPHVSKEAVAALYAGTAGITGPWELTIKLVENAMENGVKLKLNSEVINIKKENNIFKIELKSGEVIKTKALINAAGVYADFINNMLSSKKFKITPRIGEYYLLDKVQGYLTDSVIFQCPTEMGKGILVSKTVHGNIIAGPTASDVENKDDVGNTQEGLDTVRQFATKSIKDVNFRDNIRNFAGLRAEADTGDFILGEAEDVKGFFNMAGTKSPGLTSAPAMAVDLSKMVVESLGGVKKKENFIKNRKMIYFISLSPEEKAKVIKKDPRYGRIICRCENITEGEIVDAIHRKCGGRTLNGIKRRVRPGAGRCQGGFCGPRVQEILARELGDDLEKIVMEQKDSYILTGKTK
>NZ_CP028101.1|WP_011016211.1|805892_807158_-|FAD-dependent-oxidoreductase
MNIKYDLVIVGGGPAGLAAAVEARKNRIDNILVIERAKELGGILQQCIHNGFGLHEFKEELTGPEYAQRFMDQLFELNIEYKLDTMVLGISENKIVQAINSVDGYMIIQAKSVILTMGCRERTRGAIAIPGDRPAGIFTAGAAQRYINMEGYMVGKRVVILGSGDIGLIMARRLTLEGAKVLAVAELMPFSGGLTRNIVQCLDDYDIPLYLSHTVVDIIGKDRVEKVIIAKVDENKKAIHGTEIEYECDTLLLSVGLIPENDISRATGIKIDPRTNGPIVNELMETSIVGIFASGNVVHVHDLVDFVSIESRKAGKSAAKYIKGEVADGEYIEVQTGNGIGYTVPQKFRIENIEKNLELSMRVRQIYKNVKIVVKSNDFVIYSVKKNHMAPGEMEKITLSKTILGKIDANKIVVEVVEEDK
>NZ_CP028101.1|WP_011016210.1|805548_805893_-|DUF1667-domain-containing-protein
MEKEMICIVCPVGCHISVNTETYEVKGNSCPRGEVYGKEELTAPKRVVTSTVKIKNALDKRCPVKTEKSIPKELNFKLMDELKNIELIAPVKRGDIVIKNVFNTGVDVVVTKDM
>NZ_CP028101.1|WP_011016209.1|804937_805414_-|hypothetical-protein
MLRDDNNFLEKKDIFEQGILALHFDRPLEALKYLLLLEEEKNSAVSFNIALCYLKSQKYETVLFYLEKALAETKRNRSIEISKDNYPELLTFEEENDAYTKPMLYLTPLQFPDLAREQILRLMVDILFILEKKEEMYKTINSLKNKNYKNVKDKIKRS
>NZ_CP028101.1|WP_147373082.1|803478_804933_-|ankyrin-repeat-domain-containing-protein
MSLYDLNDLYWKLRDNPMSREEVLEYYRNADIEEKDNAQSSLLHIAAEHGDSLAIEVLLNRGMDANIENSEAEKPLHRLAEGTRHINNGEEIAKCAELLLDAKASVLRKDRFGRTPVILAAKNAYYEILKVFIDRGLKLSLKDSEGNSALHIACQYFSDYDEEDEERYFKTIKYLLEAGLDPNEKNNDDKTATDMAIKRCNKKIIALLLGNYDEENPNELLIQTGGLSLHRAIEKKDYEAVNALIKLGTDVNAFSEEEDTLFREMTPLGIAFYMFDEYSVKALLEAGADVNLKTTEENTALGEILGYMKDNYFSFNKIPLIEELLKLLLDNGLKINDTVDKKGNTAFIKACKSIDENNLSNGKTLAAVVAKFLLKENCDVNSTNLYGQTALMFLCASRDIESQDLQIQVLEAGADVGTMDKNGDTPLIYAAKNRNANSGKEMAELLFDFGDPKLEHVNNDGKTALEIATDLNNEEFVKFLLTKM
>NZ_CP028101.1|WP_011016207.1|802481_803462_-|ankyrin-repeat-domain-containing-protein
MDNSMIFLNACKNGQKGVVEAFIKKGGLDFNKRDSLGNTALFYACMKGSKDIVKLLLSNGADGSLANNNSMIPLHAVSKSGNKEIISLLLDKGSDINTTDKEGRTPLIYTLMENRTEAAKLLLEKGADTQIKDNDGHKAIDYATANGLRDIITLLLKNENNDNKNNSGNTPLHQACYNNQSEVVRELLKQDGIELNIVNDNGNTPLIIAAIESNLLIVQLLLKAGADAKQRLLNGNTALHFAAENGNQYIGKALLEAGAEIDGQNEMGETALLIAAMEGYNDFVKLLVENGANVNIIDNSQNSPLFYASEKGYTEIVEILLLAGAE
>NZ_CP028101.1|WP_011016206.1|802098_802398_+|cell-division-topological-specificity-factor-MinE
MGFFSNFFKKENSKDDAKNRLKLVLIQDRAMLPSGVLENMKDDILKVLSKYVEIEKSKLNIEMCPYEDDPRKIALVANIPILKSSTREVTKTTKQQKRK
>NZ_CP028101.1|WP_023040865.1|812429_813314_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MEKIYGVIDVTSGYANGKTKNPKYQDLHSSGHAETVHVKYDASKVNLSTLLKYYFKIIDPTSVNKQGNDRGSQYRTGIYYVNQNDKSVIQDEIKEQQKKYSQKIVVEVLPLKEYYLAEEYHQDYLKKNPNGYCHIDLSKADDIIVDEKKYPKLSEKELRMKLNSKQYEVTQNGDTERAFQNDYWDFFDKGIYVDITTGEPLFSSTDKYASQCGWPSFVKPIVPEVVTYHNDTSFNMIRTEVRSRSGKAHLGHVFDDGPRDRGGKRYCINSAAIQFIPYAEMEAKGYGYLLPLVK
>NZ_CP028101.1|WP_011016216.1|813344_814130_+|response-regulator-transcription-factor
MYKLMIADDEPLIRRGIKQLIDLSSLQIGEIYEASTGEEALKVFEEFKPEIVLMDINMPKIDGLSVAKKIKSINPDTKIAIITGYNYFDYAQTAIKIGVEDYILKPISKSDVSEIIVKLVSSLQKERKDKEIEKVLEKITTVDTQDNIAKNNYKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYREMVLKNENE
>NZ_CP028101.1|WP_005902683.1|814116_815775_+|sensor-histidine-kinase
MKMNNKPLNIKIGFYFLITNLVLVLLLGSIFYFSSSSLLIQKEISAKTEAIEKSGNYIELYMNKLTTLSQVISHDKGVYDYLKNKDESEKNRILNIIDNTLSTDPYIKSIILIRKDGAVISNEKNVNMEVSSDMMKEEWYVNSLMNPMPVLNPLRKQNFSLDGMDDWVISVSREIADTNGENLGVLLIDVKYQALHEYLQNQETGKNSDIVILDEDNRIVYYKEIPYDTSQEKYLKNLKNIEEGYNRKENTVTVKYPIKNTHWTLIEISYMQEIDSLKNHFFEMIVISCLASLLITVLINISVLRRITKPIKELEQHMNNFNNDLSKINLKGDVSIEILSLQNHFNEMIDKIKYLREYEINALYSQINPHFLYNTLDTIIWMAEFQDTEKVISITKALSNFFRISLSNGKEKIPLKEEINHIKEYLYIQKQRYEDKLEYKISIQEELENIEVPKIILQPFVENAIYHGIKNLDTTGIISIYSQIVENKIELIIEDNGIGFEAAKKQALMKMGGVGIKNVNKRIQYYYGKEYGAKIDSSFKTGARIIITLPYK
>NZ_CP028101.1|WP_011016217.1|815893_817327_+|putative-DNA-binding-domain-containing-protein
MTIEEMKNLIQNGEKIDVEFKESKEALTKDIFDSVCSFNNRNGGHIFLGVSDKKEIIGVNKNKIDKIIKEFTTSINNPQKIYPPLYLVPLVVEIDEKIIVYIRVPKGYQVCRHNGKIWDRSYEGDINITDNSELVYKMYARKQSSYFVNKVYPNLKIDFLDINIIEKVRKMAILRNQNHTWKNLNDEELLRSANLILIDPETNKEGITLAAILLFGKDNSIMSVLPQHKTDAIFRVENKDRYDDRDVIITNLIDSYDRLISFGQKHLNDLFVLDGIINVNARDRILREIISNTLAHRDYSSGFPAKMIIDDEKIIIENSNLAHGIGELDLQKFEPFPKNPPISKVFREIGLADELGSGMRNTYKYTQLYSGMKPIFEEGNIFRTIIPLKEIATEKVGGENVSRNVPRNVPRNVPQKSIEEMKEIMKEIIKKNNRVSRKYLAEILGVSEKTITRYIKEIPNLSYIGKGKNGYWKLDEE
>NZ_CP028101.1|WP_011016218.1|817483_819031_+|DNA-binding-protein
MRNKKLGIIGIFVLCLLFLVACNKEKEKMAKPEEKEVVLRLEGGDFGYPNPFRHQNRGPGFFKMELIYDSLLEKDDNGLIPWLAKEWEVSEDGKTFTFTLVDGAKWHDGKDLTAEDVAFTVEYFKKHPPVRGGLMLNGEYLMDTVSVDGNKVIIHTVDYTPVALEKIGSMRIIPKHIWEKVDDPEKFSGEGDIVGSGPYKLVAYNSEQGSYKMEKNNEFWGLEAAATRIEWIPVSDRVLAFQNGEIDITVIPVDLLKNFENNKEFKIVKNFGLHNYRLYFNFDKVPVLQDKDVRQAIAYAIDRKELIDKLERGSGLEGSQGYLPPTHSMYNKNLPAYSYNVEKAKELIKGKTFEVELLVGNSPKEVKMAELIKIRLEEIGISVKVVSIDSKARDSKVRDKDYQMAIMKSGGMGADPDMLREIYSSKSKKGELAGYHNEALDKLLFQQSTEKDVEKRKELIYKIQEVLAEEIPMLLLYGEIENTVYRPEKYDYWTTRYDHTKLDHPKLSYVIRPKK
>NZ_CP028101.1|WP_011016219.1|819027_819984_+|ABC-transporter-permease
MKKKYIVLFFILLTIHFMLPRIMKADPFVFLSSDGTEVASYTEEEILKYKQYYGLDMPLWRQYLNYLLGIFTGNLGYSIYFKEKVTTLIFSRLVWTAGIVIFSLCISSVFGLFLGSFSAWNYQRKVDTILYQGMVIISEIPSFLIANMILMFFIIKWRILPTAGGITPFIKIEFSWNFILDIIKHAILPGLTLTFLRLPDFYFVSRSAMLQQIQKKYVETAQAKSLGDIYILMRHCLPNAINPIMTRFLLSIQTMFNATLIVENVFKYPGIGKLIRDAVFYRDYLLLQGIFLVITIFILTISFLGENFYQTIEKRKEL
>NZ_CP028101.1|WP_011016220.1|819980_820805_+|ABC-transporter-permease
MRIKEINLKLSYVFLFFILILAILPYFSFLKSGTIPSGTALLPPSKEHWFGTDDLGIDIFSEICYGAKNTIILSCSSALFAAIGGSVIGMVAGYFGGIFDEILLGIIDFFISVPDLLLMVVLGTFLGPSLRNIVFSIVLVSWIMPAKITRSQILRMKQENYIKIAKIYGAGFIHLFLWHFWKPFFSIIMISVIKLMNRAILAEAALSYLGLGDPLSKSWGMIITRAMDFPNIYLTEFWKWWLVYPVTFMVLMVLSIAIIGQKIERKIGGVYRTQ
>NZ_CP028101.1|WP_023040869.1|820801_822469_+|ABC-transporter-ATP-binding-protein
MTEILKVENLTITYYSHSGSSQIGVKNVNFSLNEGEIYGIVGESGSGKSTILLAIMGLLYERAKIEGKIYFKGKEIQNLNKKEMKEVCFKEIGLIFQNQMESLNPSLTIEKQILEILRKKFSDKNELQKKLDEVLEMVGLELKNKKKYPHELSGGMRQRVFIAMGICLNPPLLLIDEPTTALEEESKKNILNLLKDIKRKYNTTMLIISHDFEVIEYLTEKVLILLRGNLIEKGRTEKILEEPKHPYTFALLQSSTFLNPWKDLWGIKEEEDEKYPCPFYKRCTQKVEACLNYIPYLKSDIEEGVACYKNGIEKLLVLKNIRKLFKTSEQKVEAVKNCSLRVRQGEIVALLGKSGSGKTTLLRIIAGLLSKDAGEICFFQEKIEKNNLISREKCLQIIEQDPFSSMNPSLTVEEIIAEPTVILHKKNLALCKETVVENLKKVGLETNYNFLKKQANELSGGQRQKVAIARALSMDPKLLLADEISSMLDESGKLNIMRLLKQLQHNIGFSVLLVTHDITLAKKVADYIYYMDSGCIIEEGSVRKIFCKKRGNDGY
>NZ_CP028101.1|WP_005902671.1|822458_822809_+|PadR-family-transcriptional-regulator
MDINERSKFKHLTAFILVLLAEKNYSPREVKKSLLENFPGFTRDMSTVYRCLSSLEKEGLVTVDWYLPDGGAAKKIYSLTEKGWEALYEWKKDIVIRKRNFEVFLKKIENLIEGEK
>NZ_CP028101.1|WP_011016222.1|822805_823606_+|class-I-SAM-dependent-methyltransferase
MNIEEFEKIMQREDKKENQEDLEKIWDSKSEWFFKRTEKKQENFSDRLIFRMIKEKNLLNENSKVLDIGCGTGRHLLEFSKFTSYVTGTDISSKMLDYAKEKLKNVREAKFVHGNWMENFTKEKEFDLVFASMTPAITTIEHIKRMCLISKKYCLMERFVYNRDLIREEIEGILGRKLNKLHSNQKEYTYGVWNIVWNLGYFPEIYYDKYVYEAEKTVVDYMEQIIYTDEEKNKIIEFLKGKEKNGKIMSKEYVIKAIILWDVNIF

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Crispr_ID: NZ_CP028101_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028101_3

1403746-1403995

Orphan

Consensus_repeat	Method
TCAAGAAAATTATAAAAATGGTGAACTAGATGGA	PILER-CR
AATTATAAAGATGGTGAACTAGATGGA	CRISPRCasFinder

3 spacers

DinG

The CRISPR arrays of NZ_CP028101_3

>merge|NZ_CP028101|3|1403746-1403995|PILER-CR,CRISPRCasFinder
TGAAGAAAATTATAAAGATGGTGAACTAGATGGATTAATTAAAGATTATTTTGAAAGTGGAAAAATAAAAGCTGAAATTAATTATAAAAATGGTGAACTAGATGGACCTGCAAAAGAATATTATGAAAATGGGCAAGTATATATTCAAGAAAGCTATAAAAATGGTGAGCTAGATGGAGAATCACTTAATTTTGATGAAAATGGAAATTTAAAATCAAAAGAAGTTTATAAAAATGGAGAATTGGTTGAA

>NZ_CP028101|3|1|1403746-1403923|PILER-CR
TGAAGAAAATTATAAAGATGGTGAACTAGATGGA	TTAATTAAAGATTATTTTGAAAGTGGAAAAATAAAAGCTGAAATT
AATTATAAAAATGGTGAACTAGATGGACCTGCAA	AAGAATATTATGAAAATGGGCAAGTATATATTCAAGAA
AGCTATAAAAATGGTGAGCTAGATGGA

>NZ_CP028101|3|2|1403753-1403995|CRISPRCasFinder
AATTATAAAGATGGTGAACTAGATGGA	TTAATTAAAGATTATTTTGAAAGTGGAAAAATAAAAGCTGAAATT
AATTATAAAAATGGTGAACTAGATGGA	CCTGCAAAAGAATATTATGAAAATGGGCAAGTATATATTCAAGAA
AGCTATAAAAATGGTGAGCTAGATGGA	GAATCACTTAATTTTGATGAAAATGGAAATTTAAAATCAAAAGAA
GTTTATAAAAATGGAGAATTGGTTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028101.1\|WP_011016625.1\|1413254_1413770_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP028101.1\|WP_005902446.1\|1395284_1395818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028101.1\|WP_011016618.1\|1405187_1406429_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP028101.1\|WP_005902448.1\|1393918_1394605_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_CP028101.1\|WP_032884848.1\|1400275_1402084_+\|YadA-family-autotransporter-adhesin	unknown	unknown	gnl\|CDD\|227614
NZ_CP028101.1\|WP_011016624.1\|1412746_1413235_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NZ_CP028101.1\|WP_005902445.1\|1395834_1397025_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|377535
NZ_CP028101.1\|WP_011016619.1\|1406505_1407471_-\|glutamate-formimidoyltransferase	unknown	unknown	gnl\|CDD\|226169
NZ_CP028101.1\|WP_147373135.1\|1392999_1393755_-\|DUF4241-domain-containing-protein	unknown	unknown	gnl\|CDD\|379427
NZ_CP028101.1\|WP_011016614.1\|1397128_1398367_+\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP028101.1\|WP_011016617.1\|1402929_1403259_-\|DUF1904-domain-containing-protein	unknown	unknown	gnl\|CDD\|370190
NZ_CP028101.1\|WP_147373138.1\|1410657_1412730_+\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|224397
NZ_CP028101.1\|WP_011016615.1\|1398373_1400080_+\|YgiQ-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|274847
NZ_CP028101.1\|WP_005902447.1\|1394641_1395256_+\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223661
NZ_CP028101.1\|WP_147373139.1\|1415227_1416472_-\|murein-L,D-transpeptidase-catalytic-domain-family-protein	unknown	unknown	gnl\|CDD\|379310
NZ_CP028101.1\|WP_059222549.1\|1413766_1415116_-\|DUF1576-domain-containing-protein	unknown	unknown	gnl\|CDD\|377881
NZ_CP028101.1\|WP_011016616.1\|1402172_1402928_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP028101.1\|WP_147373137.1\|1408177_1410640_+\|DEAD/DEAH-box-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP028101.1\|WP_011016620.1\|1407685_1408156_+\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP028101.1\|WP_005902437.1\|1404531_1405170_-\|formiminotetrahydrofolate-cyclodeaminase	unknown	unknown	gnl\|CDD\|225939

Protein	Function_ID	Function_description	E-value
NZ_CP028101.1\|WP_011016625.1\|1413254_1413770_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.0841e-28
NZ_CP028101.1\|WP_005902448.1\|1393918_1394605_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	4.09402e-153
NZ_CP028101.1\|WP_032884848.1\|1400275_1402084_+\|YadA-family-autotransporter-adhesin	gnl\|CDD\|227614	COG5295, Hia, Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures].	1.96849e-36
NZ_CP028101.1\|WP_005902445.1\|1395834_1397025_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|377535	pfam05636, HIGH_NTase1, HIGH Nucleotidyl Transferase. This family consists of HIGH Nucleotidyl Transferases.	5.21533e-142
NZ_CP028101.1\|WP_011016618.1\|1405187_1406429_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP028101.1\|WP_011016624.1\|1412746_1413235_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	5.68144e-53
NZ_CP028101.1\|WP_011016619.1\|1406505_1407471_-\|glutamate-formimidoyltransferase	gnl\|CDD\|226169	COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism].	0
NZ_CP028101.1\|WP_147373135.1\|1392999_1393755_-\|DUF4241-domain-containing-protein	gnl\|CDD\|379427	pfam14025, DUF4241, Protein of unknown function (DUF4241). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 205 and 315 amino acids in length. There is a conserved GDG sequence motif at the C-terminus.	2.48719e-69
NZ_CP028101.1\|WP_011016614.1\|1397128_1398367_+\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP028101.1\|WP_011016617.1\|1402929_1403259_-\|DUF1904-domain-containing-protein	gnl\|CDD\|370190	pfam08921, DUF1904, Domain of unknown function (DUF1904). This domain is found in a set of hypothetical bacterial proteins.	7.33848e-49
NZ_CP028101.1\|WP_147373138.1\|1410657_1412730_+\|HDIG-domain-containing-protein	gnl\|CDD\|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	0
NZ_CP028101.1\|WP_011016615.1\|1398373_1400080_+\|YgiQ-family-radical-SAM-protein	gnl\|CDD\|274847	TIGR03904, putative_radical_SAM_protein_YgiQ, uncharacterized radical SAM protein YgiQ. Members of this family are fairly widespread uncharacterized radical SAM family proteins, many of which are designated YgiQ. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP028101.1\|WP_005902447.1\|1394641_1395256_+\|phosphoglycerate-mutase	gnl\|CDD\|223661	COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism].	3.78101e-70
NZ_CP028101.1\|WP_147373139.1\|1415227_1416472_-\|murein-L,D-transpeptidase-catalytic-domain-family-protein	gnl\|CDD\|379310	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This family is related to pfam03734.	6.60392e-85
NZ_CP028101.1\|WP_059222549.1\|1413766_1415116_-\|DUF1576-domain-containing-protein	gnl\|CDD\|377881	pfam07613, DUF1576, Protein of unknown function (DUF1576). This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.	1.8725e-57
NZ_CP028101.1\|WP_011016616.1\|1402172_1402928_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.78953e-09
NZ_CP028101.1\|WP_147373137.1\|1408177_1410640_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	3.26044e-175
NZ_CP028101.1\|WP_011016620.1\|1407685_1408156_+\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	6.12391e-80
NZ_CP028101.1\|WP_005902437.1\|1404531_1405170_-\|formiminotetrahydrofolate-cyclodeaminase	gnl\|CDD\|225939	COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism].	6.98386e-86

>NZ_CP028101.1|WP_011016617.1|1402929_1403259_-|DUF1904-domain-containing-protein
MPHLKIRGIEKNLIVENSKEIIDELTKIIGCDRNWFTIEHQNTKYIFDGKIVDGYTFVELYWFARDEKIKKEVADFLTKFIKKINNNKDCCIIFFTLTGDNYCDNGEFF
>NZ_CP028101.1|WP_011016616.1|1402172_1402928_-|methyltransferase-domain-containing-protein
MDKKLIANWLEEEKNAHIQGWDFSYIHGRYEEENDLPWDYKNIIKQYLKAEYKLLDIDTGGGEFLLTFEHPFKNTSVTENYPPNIEFCKKNLVPLGINLYETDGASLLPFKDNEFDIIINKHGNFNISELFRILKTGGIFITQQVGAENDKELIELLLPKTEFPFPNLYLKNISKKFKETGFKILQEQEAFCPIKFYDIGALVWYAHIIEWEFPNFSVNNCLENLFKAQEILEKQGVVEGKIHRFLIVAQK
>NZ_CP028101.1|WP_032884848.1|1400275_1402084_+|YadA-family-autotransporter-adhesin
MKKSVSLKLIIFSFLLVSGSITYSATPTIEAGTGTDSTEAGIDNEASKEKSSAFGYKNIADGEESSAFGFSNTASGKRSSAFGHSNKASGERSSAIGYNNEVTGLESSVLGNNYKVTGNHSGAFGIGTYDEVNRVYKRINGGGNSYMIGNDNNIAKGANDNFILGNGVDIGVDSNGRKIEGSVVLGHGSSVSESEVVSVGTPDGGRRIVNVREARITATSNDATTGKQLYQVAKATSTDIDVAAWKAKLGVGSGGVDLTVYSKRDASNLTATDISAWRTKLGVGAGGGGGIVNTATGTGSTGLGIDNTVTGDYSTAIGYKNNVSGNKSGAFGDPNVVTGNGSYAFGNDNTINGNNNFVLGNNVTIGSGIQNSVALGNNSTVSSSNEVSVGSATQKRKITNVADGDVSATSTDAVTGRQLYKAMQNSGATGIENLRNEVNEKIDDVKDEVNHVGSLSAALAGLHPMQYDPKAPTQVMAALGHYRNKQSVAVGLSYYFNDRFMVSAGVAIGGERRVKSMANVGFTVKLGKGSGVEYNETPQYVVQNEVKRLTVENQNLKSQVNNQGKENQELKAEINSLNTKNKEQDEKIKNLEEKLNRLLKNK
>NZ_CP028101.1|WP_011016615.1|1398373_1400080_+|YgiQ-family-radical-SAM-protein
MKFLPTTKEEMKNLGWDSIDVLLISGDTYLDTSYNGSVLVGKWLVEHGFKVGIIAQPEVDVPDDITRLGEPNLFFAVSGGCVDSMVANYTATKKRRQQDDFTPGGVNNKRPDRAVLVYSNMIRRFFKGTTKKIVISGIESSLRRITHYDYWTNKLRKPILFDAKADILSYGMGEMSMLQLANALKNGEDWKNIKGLCYLSKEMKQDYLSLPSHSECLADKDNFIEAFHTFYLNCDPITAKGLCQKCDDRYLIQNPPSESYSEEIMDKIYSMEFARDVHPYYKKMGAVRALDTIKYSVTTHRGCYGECNFCAIAIHQGRTIMSRSQSSIVEEVKNIAGTPKFHGNISDVGGPTANMYGLECKKKLKLGACPDRRCLYPKKCLHLQVNHNNQVELLKKLKKIPNIKKIFIASGIRYDMILDDNKCGQMYLKEIIKDHISGQMKIAPEHTEDKILGLMGKDGKSCLNEFKNQFYKINNELGKKQFLTYYLIAAHPGCKDKDMMDLKRYASQELRVNPEQVQIFTPTPSTYSTLMYYTEKDPFTNQKLFVEKDNGKKQKQKDIVTEKRKNRK
>NZ_CP028101.1|WP_011016614.1|1397128_1398367_+|peptidase-T
MDSKKYSTLKERFLRYVKFNTRSDDASETIPSTPSQMEFAKMLKKELEELGLSNIFINKACFVNATLPSNIDKKVATVGFIAHMDTADFNAEGISPQIVENYDGKDIVLNKEQNIVLKVEEFPNLKNYISKTLITTDGTTLLGADDKSGIVEIIEAVKYLKEHPEIKHGDIKIAFGPDEEIGRGADYFDVKEFAADYAYTMDGGPIGELEYESFNAAQAKFKIKGVSVHPGTAKGKMINASLIASEIIEMFPKDEVPEKTEGYEGFYFLDEMKSNCEEGEVVYIIRDHDKAKFLAKKEFVKELVEKVNKKYGREVVKLELKDEYYNMGEIIKDHMYVVDIAKQAMENLGIKPLIKAIRGGTDGSKISFMGLPTPNIFAGGENFHGKYEFVALESMEKATDVIVEIVKLNAER
>NZ_CP028101.1|WP_005902445.1|1395834_1397025_+|nucleotidyltransferase-family-protein
MFENVVGLIVEYNPFHNGHLHHIQEIDRLFEDNIKIAVMSGDYVQRGEPSLINKLEKTKIALSQGIDIVIELPTFYSTQSAEIFAKGSVNLLNKLSCSHIVFGSESNDLDKLKRIATISLTKEFELSLREFLAEGFSYPTAFSKVLFDEKLGSNDILALEYLRAIKTINSKIEAYCIKREKTGYYDDEKDNFSSATYIRKILLDSNEKKENKLNKIKNLVPEFSYKILEENFGVFSCLSDFYDLIKYNIIKNCSELKNIQDLEIGLENRLYKYSLENLKFEDFFNEVLTKRITISRLQRILLHSLFNLTENITEKVKNEVPFVKILGFSTKGQKYLNYLKKSKNYNERKILTSNRNLKEILNEEEAKLFNFNELCSQIYRIKSSYINIGYPIIKKD
>NZ_CP028101.1|WP_005902446.1|1395284_1395818_+|hypothetical-protein
MKKIILYLFLLGTSLSFGATNDLPDNVEKKIRSAVSTFSGSEKRENYAWYKDSYLEMVERLDKSGIPETDKQMIIKRLEAMYGGNYPKQLARVNDEINDYKGLVNRIREEQNAVQQKTEAENQKSKEEIKSILSSSSIPKVDLDKIEQNAKAEYPNDYTLQKAYIKGAIKTYNDLKK
>NZ_CP028101.1|WP_005902447.1|1394641_1395256_+|phosphoglycerate-mutase
MKKIIIFFLLIIAITGNSEIIKEKKILRKETMELILVCHEKIQSDFENIDLSPSGIEAVKQLAEKMKKNYSFDIAYTSNLKIANRTLNYILEEMNELEIPINKSETLNTITRKDLEGKNVFESLKSYWKSDISKNLKEGKNVLIVTDEDTIRILIKYLLDMSDRDIQDVYIPIDNTFYFEVDKNLEVISAGFPIQKVLERIDEF
>NZ_CP028101.1|WP_005902448.1|1393918_1394605_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MKLVLIRHGESAWNLENRFTGWKDVDLSPKGMEEAKSAGKILKEMNLVFDVAYTSYLKRAIKTLNIVLEEMDELYIPVYKSWRLNERHYGALQGLNKAETAKKYGDEQVHIWRRSFDVAPPSIDKNSEYYPKSDRRYADLADSDIPLGESLKDTIARVLPYWHSDISKSLQEEKNVIVAAHGNSLRALIKYLLNISNEDILNLNLVTGKPMVFEIDKDLKVLSSPELF
>NZ_CP028101.1|WP_147373135.1|1392999_1393755_-|DUF4241-domain-containing-protein
MQPTKEWLEKWEKVKDKLQPNSNLVNYFTLKEIAGKELDVMDIGPCSIPTGEFLVGDPLVYLGSKYEKEYFQKIPTGEFRTEICVVKASDGDCDRYAAVRLKFNDNEISYFEEAMKGIEDLKDINEGDFFGFNVDAGLACICDKKLHDLYCEFDEKFVKENPDGNAYDDYFADLFKKSYEDNPKYQRDGGDWINWTIPGTDYHLPIFQSGFGDGAYPVYLAYDKDGNVCQLIVELIDIELAYSEIDEEDEE
>NZ_CP028101.1|WP_005902437.1|1404531_1405170_-|formiminotetrahydrofolate-cyclodeaminase
MKLVELDVLKFLDIVDSNSPAPGGGSVSALASSLGASLARMVAHLSFGKKNYEALADDVKAKFVANFDELLKIKNELNDLIDKDSEAYNTVMAAYKLPKETDEEKAARSAEIQKSLKYAIQTPYDIVVLSGKAISLLGEILANGNQNAITDIGVGTMLLMVGLEGGILNVKVNLSSIKDTAYVEKITKEIYDIKATAEKEKERIMGIVNAAL
>NZ_CP028101.1|WP_011016618.1|1405187_1406429_-|imidazolonepropionase
MQADLVLYNIGQLVTSRELDKTKKMDNIEVIENNGYIVIEKDKIVAVGSGEVLKEYLTPATEMVDLSGKLVTPGLIDSHTHLVHGGSRENEFAMKIAGVPYLEILEKGGGILSTLKSTRNASEQELIEKTLKSLRHMLELGVTTVEAKSGYGLNLEDELKQLEVTKILGYLQPVTLVSTFMAAHATPPEYKDNKEGYVQEVIKMLPIVKERNLAEFCDIFCEDKVFSVDESRRILTVAKELGYKLKIHADEIVSLGGVELAAELGATSAEHLMKITDSGINALANSNVIADLLPATSFNLMEHYAPARKMIEAGIQIALSTDYNPGSCPSENLQFVMQIGAAHLKMTPKEVFKSVTINAAKAIDKQDTIGSIEVGKKADITVFDAPSMAYFLYHFGINHTDSVYKNGKLVFKK
>NZ_CP028101.1|WP_011016619.1|1406505_1407471_-|glutamate-formimidoyltransferase
MAKIVECIPNYSEGKDLAKIERIVAPYKNNPKIKLLSVEPDANYNRTVVTVLGDPEEVKKAVIESIGIATKEIDMNVHKGEHKRMGATDVVPFLPIQEMTTEECNEISKEVGKAVWEKFQLPVFLYESTATAPNRVSLPDIRKGEYEGMAEKLKQPEWAPDFGERAPHPTAGVTAIGCRMPLIAFNINLATTNMDIPKEIAKAIRFSSGGFRFIQAGPAEILDKGFVQVTMNIKDYTKNPIYRIMETVKMEAKRWGVKVTGCEIIGATPFASLTDSLKYYLACDGIKDDVDAMSMDKVVELMIKYLGLTDFDVKKVLEANI
>NZ_CP028101.1|WP_011016620.1|1407685_1408156_+|DUF1456-family-protein
MTNNDFLRRLRYALNIKDNVMVQIFKKGNVLLTREDVIDYLKKDIDEGFKKLSNNDLIAFLDGLITQKRGKKEDGTPVPQVKVTKNNLNNILLRKLRIALAFKSYDMIKIFKLGGIEISEGELSALFRSEDHKNYKECGDKYIRVFLKGLTEYYRN
>NZ_CP028101.1|WP_147373137.1|1408177_1410640_+|DEAD/DEAH-box-helicase
MDIKDRFSEESLQTIKEYLQENNNKSMIFKATFDDNELIQEPFFLSLYKKKNFEETLTKVGKNEVVIRTTKPNQLYPSDMELELSEELYNRRNIAYSLLSSDLDDFYFVQDIDRLFLEEVNIENYFSKDGILAKEIKGFEYRKEQEEMAHYIQDAINEDRKIIIEAGTGTGKTLAYLIPAIKWAVVNKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCKRLFNELSIGRSIDIEIFSMEAREQIECILKWGNKTKTGDKAELPFEVYPDVWELIQSTTELCLGKKCPYRKECFYMKTRMEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYDMVIFDEAHNIESVARSYFSVEVSKISFTRLLNRIYQKKNKRKKEKSALIRVEDTIDEKDLEDSQQYAYLLNTLKEEISILQNIGDEYFDEIRKIYETNTEAPIRKSLNNFEMTKSRFLETLRDKKDIFQSKLADFLTLMMSFNNVIDEEKEKNPEVINFNNHLKMFKAYIDSFKFINSFEDDNYIYWLDINSKRTNVLLTATPLNIAEKLSTVLFDNLDRLVFASATIVANGNFDYFKKSLGLDEEDCIECIIKSPFNYDEQMSVYIPTDIQDSENISAFVTDASKFILNILLKTDGKAFILFTSYTMLNQIYYSISKKLMNKGFEVFLHGDKPRSQLIKEFKEAENPILFGTTSFWEGVDVQGENLSNVIITKLPFLVPTDPVVSAISKKIEEDGGNSFTDFQLPEAIIKFKQGVGRLIRKKTDSGNIFILDNRILKKRYGSLFINALPSQKNIKILEKDDIIEEIE
>NZ_CP028101.1|WP_147373138.1|1410657_1412730_+|HDIG-domain-containing-protein
MKKFTIFGFKFLFDIKKKDSSDEERYSDSYFLKEKVFYLILALFLITISSKIPILFRNNNYMTGDVVKSDIYSPKTIVFRDKIGKDKLIQDMIDRLDKDYIYSSEAADIYIEEFDNFHKEIIAIKKGNLKSFDYSGFERKTGKVMPERIINKLLEEDEEKIDETFSKLTTQLENAYKAGIYKEKNSIRINEPAKTDIEALEPFEREIINNFLIPNYIYDEAKTRNTINEKVSQINDQYIEIKAGTLIAKTGEVLTDRKIDILDRLGIYNYKMSIFIIALNLIFLLVISSIFNVVTTKFYSKEILEKNKYRAIMLLTIATLLVFRIVPSSMIYLLPLDTMLLLLLFIVKPRFSVFLTMIVISYMLPITDYDLKYFTIQSIAIFATGFLSKNISTRSSVIAIGIQLAILKILLYLILSFFSVEESYGVALNTIKIFISGLFSGMFAIALLPYFERTFNILTIFKLMELADLSHPLLRKLSIEAPGTFQHSMMVATLSENAVIEIGGDPTFTRVACYYHDIGKTKRPQYYVENQTDGKNLHNDISPFMSKMIILAHTREGAEMGKKYKIPKEIRDIMFEHQGTTLLAYFYNKAKEIDPNIQEEEFRYSGPKPQTKESAVILLADSIEAAVRSLDLKDPVKIEQMVRKIVDSKIRDNQLSDANITFREVEIIVNSFLKTFGAIYHERIKYPGQK
>NZ_CP028101.1|WP_011016624.1|1412746_1413235_+|rRNA-maturation-RNase-YbeY
MELIVDFSSDLQTEKYNMFIDTLYENNHLENYIKKVLNLEKIESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFNIGSYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMREREEAILSSFGYTRDK
>NZ_CP028101.1|WP_011016625.1|1413254_1413770_-|NUDIX-hydrolase
MKILDTPNLKFLKVGVDTDPLNNHNLEYLEKQNAIAALILNHSGDKVLFVNQYRAGVHNYIYEVPAGLIENDEKPIVALEREVREETGYKREDYDILYDSNTGFLVSPGYTTEKIYIYIIKLKSDDIVPLDLDLDETENLYTRWIDIKDAGKLTLDMKTIFSLHIYANLIK
>NZ_CP028101.1|WP_059222549.1|1413766_1415116_-|DUF1576-domain-containing-protein
MDKITQRMKQIEILTVALSMLILIFFINYVINEHENIFIGMYKIITSPAVLVTDFIQVGGIGAAFLNAILIFSFNFFLVKSFKVKITGITIAAFFTVFGFSFFGKNILNILPFYLGGILYSIYTSTDFSEHIVPIAFSSALAPFVSSIAFYGDISYETSYINAILIGVLIGFIVVPLARSLYDFHEGYDLYNLGFTAGILGSVIIAVLKLYHFEITPQFLLSTEYDTPLKILCSAAFISLIIIGFYINDNSFSGYFSLIKDDGYKSDFTQKYGYGLTFINMGIMGFISMGFVIITGQTFNGPVLAALFTVVGFSANGKTIFNTIPILIGILLASLGSKGSIFTLAISGLFGTALAPISGIFGPIAGIIAGWLHLAVVQNVGLVHGGLNLYNNGFSAGIVAGFLLPIFNMITDNNNQRKMNIQRKHMNFLKNVQANIKKRIHKKEDEEKE
>NZ_CP028101.1|WP_147373139.1|1415227_1416472_-|murein-L,D-transpeptidase-catalytic-domain-family-protein
MKRVLIFFCMLLLTSNSFAEEKLVTENVTENIQQPVEQKKQKIVVDVKSVYDSLNIKNKIDYSIFQKAYLGYVQISNKNPGVLIIIDYSKPSNEERFYVLDLDKKKLVYSTRVAHSKNSGLEIPLEFSDDPNSYQSSLGFFVTLGEYNGAYGYSLRLKGLEENINANAEDRAIVIHGGDIVEDEYIKKFGFAGRSLGCPVLPHSLTREIIDFIKHGRVLFIYGNDEEYVDDSTYLSELAPVFEGSPKNIVEIEKTIEIQKVSPTPTVTVVTTTTAPITIVTDNKKDNNNRETVIAEANITKIFEIIKQEYKYTNNVDNSKIAYTKLLKDVIQEKLNKTTEIKETTENKKINDENMDNKEKAVEQTITDNTPETKKEDETVVIQQNENVQEDKKEERKYPEEVTKKSLGLENKLK

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Crispr_ID: NZ_CP028101_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028101_4

1843734-1844825

Unclear

Consensus_repeat	Method
ATTTAAATTCTAATATAGAAATACATAAAT	CRT
ATTTAAATTCTAATATAGAAATACATAAAT	CRISPRCasFinder
ATTTAAATTCTAATATAGAAATACATAAAT	PILER-CR

16 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP028101_4

>merge|NZ_CP028101|4|1843734-1844825|CRT,CRISPRCasFinder,PILER-CR
TTGGGGTCAGTACATTTTAAATACATAAATTTATTCTTTCCCTGCAATCATTTATATCTTGTTCGATATTTAAATTCTAATATAGAAATACATAAATTTCTATAAATTTCAAATGTCTTACTATCTTTCCATATTTAAATTCTAATATAGAAATACATAAATTAAAAAACTCCTATCAGAAAAATTACCTTTTTTAATATTTAAATTCTAATATAGAAATACATAAATGAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAAATTTAAATTCTAATATAGAAATACATAAATCTTAGAACAAAGAGCAGAATTATTAAAAAATTCTCATTTAAATTCTAATATAGAAATACATAAATTTTATCAGAAGCTTTTGAATTACCAGTTGTAGTATATTTAAATTCTAATATAGAAATACATAAATAAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAAATTTAAATTCTAATATAGAAATACATAAATTTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCCATTTAAATTCTAATATAGAAATACATAAATATATAGTATGTATCATCAATTAAATACGCTTCTTCATTTAAATTCTAATATAGAAATACATAAATGAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAATATTTAAATTCTAATATAGAAATACATAAATAAGAGATTTTTTATTTGAATTAGCTAATGAAGCTACATTTAAATTCTAATATAGAAATACATAAATTAGATTATTGACTTCATTTAATCCTGGAATAGTTACATTTAAATTCTAATATAGAAATACATAAATTAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTTATTTAAATTCTAATATAGAAATACATAAATGAATACTTGAATCTTTTAACTTAAACATCTGTAATACTTATTTAAATTCTAATATAGAAATACATAAATCTGTTGATTCAAATAATAAATTAGTTGGAAGTAGATTTAAATTCTAATATAGAAATACATAAATTCAAAAATACATTATGTCAATGAATTAACTCAAAACTCATTTAAATTCTAATATAGAAATACATAAAT

>NZ_CP028101|4|2|1843734-1844825|CRT
TTGGGGTCAGTACATTTTAAATACATAAAT	TTATTCTTTCCCTGCAATCATTTATATCTTGTTCGAT
ATTTAAATTCTAATATAGAAATACATAAAT	TTCTATAAATTTCAAATGTCTTACTATCTTTCCAT
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTCCTATCAGAAAAATTACCTTTTTTAAT
ATTTAAATTCTAATATAGAAATACATAAAT	GAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	CTTAGAACAAAGAGCAGAATTATTAAAAAATTCTC
ATTTAAATTCTAATATAGAAATACATAAAT	TTTATCAGAAGCTTTTGAATTACCAGTTGTAGTAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	TTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCC
ATTTAAATTCTAATATAGAAATACATAAAT	ATATAGTATGTATCATCAATTAAATACGCTTCTTC
ATTTAAATTCTAATATAGAAATACATAAAT	GAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAGAGATTTTTTATTTGAATTAGCTAATGAAGCTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAGATTATTGACTTCATTTAATCCTGGAATAGTTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTT
ATTTAAATTCTAATATAGAAATACATAAAT	GAATACTTGAATCTTTTAACTTAAACATCTGTAATACTT
ATTTAAATTCTAATATAGAAATACATAAAT	CTGTTGATTCAAATAATAAATTAGTTGGAAGTAG
ATTTAAATTCTAATATAGAAATACATAAAT	TCAAAAATACATTATGTCAATGAATTAACTCAAAACTC
ATTTAAATTCTAATATAGAAATACATAAAT

>NZ_CP028101|4|3|1843801-1844825|CRISPRCasFinder
ATTTAAATTCTAATATAGAAATACATAAAT	TTCTATAAATTTCAAATGTCTTACTATCTTTCCAT
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTCCTATCAGAAAAATTACCTTTTTTAAT
ATTTAAATTCTAATATAGAAATACATAAAT	GAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	CTTAGAACAAAGAGCAGAATTATTAAAAAATTCTC
ATTTAAATTCTAATATAGAAATACATAAAT	TTTATCAGAAGCTTTTGAATTACCAGTTGTAGTAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	TTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCC
ATTTAAATTCTAATATAGAAATACATAAAT	ATATAGTATGTATCATCAATTAAATACGCTTCTTC
ATTTAAATTCTAATATAGAAATACATAAAT	GAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAGAGATTTTTTATTTGAATTAGCTAATGAAGCTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAGATTATTGACTTCATTTAATCCTGGAATAGTTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTT
ATTTAAATTCTAATATAGAAATACATAAAT	GAATACTTGAATCTTTTAACTTAAACATCTGTAATACTT
ATTTAAATTCTAATATAGAAATACATAAAT	CTGTTGATTCAAATAATAAATTAGTTGGAAGTAG
ATTTAAATTCTAATATAGAAATACATAAAT	TCAAAAATACATTATGTCAATGAATTAACTCAAAACTC
ATTTAAATTCTAATATAGAAATACATAAAT

>NZ_CP028101|4|2|1843866-1844825|PILER-CR
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTCCTATCAGAAAAATTACCTTTTTTAAT
ATTTAAATTCTAATATAGAAATACATAAAT	GAAGTGCTTTTGTAGAATATTTAAAGTATTGAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	CTTAGAACAAAGAGCAGAATTATTAAAAAATTCTC
ATTTAAATTCTAATATAGAAATACATAAAT	TTTATCAGAAGCTTTTGAATTACCAGTTGTAGTAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAATTGAACAGGAAAATTTAAAAAATAAAGAAAAAA
ATTTAAATTCTAATATAGAAATACATAAAT	TTGCTCTGTATCTTTTATTAGCTTTGTTTTGTTGTTCC
ATTTAAATTCTAATATAGAAATACATAAAT	ATATAGTATGTATCATCAATTAAATACGCTTCTTC
ATTTAAATTCTAATATAGAAATACATAAAT	GAGAACTTACTACAAAGGTGGGAATCCAGTCAAAAAAAT
ATTTAAATTCTAATATAGAAATACATAAAT	AAGAGATTTTTTATTTGAATTAGCTAATGAAGCTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAGATTATTGACTTCATTTAATCCTGGAATAGTTAC
ATTTAAATTCTAATATAGAAATACATAAAT	TAAAAAACTTCTTTGAAATTATAACCACTGTCAGATTT
ATTTAAATTCTAATATAGAAATACATAAAT	GAATACTTGAATCTTTTAACTTAAACATCTGTAATACTT
ATTTAAATTCTAATATAGAAATACATAAAT	CTGTTGATTCAAATAATAAATTAGTTGGAAGTAG
ATTTAAATTCTAATATAGAAATACATAAAT	TCAAAAATACATTATGTCAATGAATTAACTCAAAACTC
ATTTAAATTCTAATATAGAAATACATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028101.1\|WP_011016956.1\|1834164_1835073_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP028101.1\|WP_011016958.1\|1836220_1839787_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP028101.1\|WP_011016970.1\|1853721_1854621_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NZ_CP028101.1\|WP_005903111.1\|1829317_1830265_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP028101.1\|WP_011016967.1\|1850483_1851386_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09650_cas7_CAS-I	gnl\|CDD\|273846
NZ_CP028101.1\|WP_011016969.1\|1852941_1853694_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP028101.1\|WP_005903113.1\|1831576_1833079_+\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	unknown	unknown	gnl\|CDD\|182880
NZ_CP028101.1\|WP_011016968.1\|1851398_1852952_-\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	cas8b2	cd09744_cas8b2_CAS-I-B	gnl\|CDD\|286705
NZ_CP028101.1\|WP_147373174.1\|1845302_1846295_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP028101.1\|WP_147373173.1\|1841125_1842130_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
NZ_CP028101.1\|WP_005903112.1\|1830461_1831487_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	unknown	unknown	gnl\|CDD\|185293
NZ_CP028101.1\|WP_021779469.1\|1849370_1850471_-\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NZ_CP028101.1\|WP_011016955.1\|1833101_1834121_+\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	unknown	unknown	gnl\|CDD\|181892
NZ_CP028101.1\|WP_011016964.1\|1846306_1846801_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP028101.1\|WP_011016959.1\|1839878_1841075_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP028101.1\|WP_011016965.1\|1846843_1849282_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028101.1\|WP_011016961.1\|1843009_1843216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028101.1\|WP_011016957.1\|1835093_1836050_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|273796
NZ_CP028101.1\|WP_011016971.1\|1855076_1855835_-\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|238702
NZ_CP028101.1\|WP_005903132.1\|1845019_1845340_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262

Protein	Function_ID	Function_description	E-value
NZ_CP028101.1\|WP_011016956.1\|1834164_1835073_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.2322e-36
NZ_CP028101.1\|WP_011016958.1\|1836220_1839787_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP028101.1\|WP_011016970.1\|1853721_1854621_-\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	8.26822e-123
NZ_CP028101.1\|WP_005903111.1\|1829317_1830265_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.21857e-86
NZ_CP028101.1\|WP_011016967.1\|1850483_1851386_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	1.08994e-61
NZ_CP028101.1\|WP_011016969.1\|1852941_1853694_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.08139e-23
NZ_CP028101.1\|WP_005903113.1\|1831576_1833079_+\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	gnl\|CDD\|182880	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional.	0
NZ_CP028101.1\|WP_011016968.1\|1851398_1852952_-\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	gnl\|CDD\|286705	pfam09657, Cas_Csx8, CRISPR-associated protein Csx8 (Cas_Csx8). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry describes proteins of unknown function which are encoded in the midst of a cas gene operon.	0
NZ_CP028101.1\|WP_147373174.1\|1845302_1846295_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	6.97167e-174
NZ_CP028101.1\|WP_147373173.1\|1841125_1842130_-\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	5.37036e-154
NZ_CP028101.1\|WP_005903112.1\|1830461_1831487_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	gnl\|CDD\|185293	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB.	1.60791e-149
NZ_CP028101.1\|WP_021779469.1\|1849370_1850471_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.76522e-08
NZ_CP028101.1\|WP_011016955.1\|1833101_1834121_+\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	gnl\|CDD\|181892	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC.	0
NZ_CP028101.1\|WP_011016964.1\|1846306_1846801_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.41713e-63
NZ_CP028101.1\|WP_011016959.1\|1839878_1841075_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP028101.1\|WP_011016965.1\|1846843_1849282_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.29376e-128
NZ_CP028101.1\|WP_011016957.1\|1835093_1836050_-\|L-lactate-dehydrogenase	gnl\|CDD\|273796	TIGR01771, L-lactate_dehydrogenase, L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis].	1.0068e-154
NZ_CP028101.1\|WP_011016971.1\|1855076_1855835_-\|NAD-dependent-protein-deacylase	gnl\|CDD\|238702	cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	3.41217e-115
NZ_CP028101.1\|WP_005903132.1\|1845019_1845340_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	3.58914e-31

>NZ_CP028101.1|WP_011016961.1|1843009_1843216_+|hypothetical-protein
MTDIKYDSKDNMNPLNFYRAVKENRLPLSEKNINDFTNIKLKVSPKLINLLQESSIFYNFSPKKRNTN
>NZ_CP028101.1|WP_147373173.1|1841125_1842130_-|phosphate-acetyltransferase
MSFLGQVRKKALQANRRIVLPESSDERIIRATSQILKEGLAQVVLVGNQEAIMHSAKAYEVSLSGAKIVDPYNFERLNDYINKLVELRAKKGMTPEEAKKILLNDPTFFGAMLVRMGDADGMVSGSASPTANVLRAAIQVIGTQPGVKTVSSVFIMELSQFKDLFGSILVFGDCSVIPFPTSEQLADIATSAAETAIKIAGINPRVALMTFSTKGSAKHECVDRVIEAGHILRERKVQFRFDAELQADAALVKSIGEIKAPLSDVSGNANVLIFPTLSAGNIGYKLVQRLAGANAYGPIIQGLNAPVNDLSRGCSVEDIVVLTAITSAQACIDC
>NZ_CP028101.1|WP_011016959.1|1839878_1841075_-|acetate-kinase
MKILVINCGSSSLKYQLINPETEEVFAKGLCERIGIDGSKLEYEVVAKDFEKKLETPMPSHKEALELVISHLTDKEIGVIASVDEVDAIGHRVVHGGEEFAQSVLINDAVLKAIEANNDLAPLHNPANLMGIRTCMELMPGKKNVAVFDTAFHQTMKPEAFMYPLPYEDYKELKVRKYGFHGTSHLYVSGIMREIMGNPEHSKIIVCHLGNGASITAVKDGKSVDTSMGLTPLQGLMMGTRCGDIDPAAVLFVKNKRGLTDAQMDDRMNKKSGILGLFGKSSDCRDLENAVVEGDERAILAESVSMHRLRSYIGAYAAIMGGVDAICFTGGIGENSSMTREKALEGLEFLGVELDKEINSVRKKGNVKLSKDSSKVLIYKIPTNEELVIARDTFRLAK
>NZ_CP028101.1|WP_011016958.1|1836220_1839787_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MAKKMQTMDGNQAAAYASYAFTEVAGIYPITPSSPMAEYTDEWAAKGMKNIFGVPVKLVEMQSEGGAAGTVHGSLQAGALTTTYTASQGLLLKIPNMYKIAGELLPGVIHVSARSLSAQALSIFGDHQDIYAARQTGFAMLATNSVQEVMDLAGVAHLSALKSRVPFLHFFDGFRTSHEIQKVEVMDYEDLKKLVDWKALEGFRKRALNPEHPVTRGTAQNDDIYFQAREVQNKFYDAVPDIVADYMKEISKITGREYKPFNYYGAPDAERVIIAMGSVCEAAQEVIDYLVEKGEKVGLISVHLFRPFSAKYFFDILPKTAKRISVLDRTKEPGSLGEPLLLDIKALFYNKENAPLIVGGRYGLSSKDTTPAQIKAVFDNLAKDTPKDAFTVGIVDDVTHTSLEVGPAMALADPTTKACLFYGLGADGTVGANKNSIKIIGDKTDLYAQGYFAYDSKKSGGVTRSHLRFGKKPIRSTYLVSRPTFVACSVPAYLNQYDMTSGLKEGGKFLLNCVWTKEEAIANIPNNVKRDLAKNKARLFIINATALAQEIGLGQRTNTIMQAAFFKLAEIIPFEEAQQYMKDYAKKSYAKKGDEIVQLNYNAIDRGANDIIEIEVDPAWANLEVTPLNEPKETTGCAYCQPDTEFVKKIVRPVNAIKGYDLPVSAFLGYEDGTFENGTSAFEKRGVAVDVPIWNVDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFATKKATGKGLDELVYRIQVSALDCVGCGSCANVCPANALDMRPIAESLETHEDINTNYLYNNVEYRSNLMPLDTVKGSQFSQPLFEFHGACPGCGETPYIKLITQLYGDRMMVANATGCSSIYSGSAPATPYTTNKNGEGPSWGSSLFEDNAEYGFGMHVGVEALRFRIQHTMEENMDKVDEDIATLFKDWIANRQYSVRTREVRDILVPKLEALGTDFAKEILDLKQYLVKKSQWIIGGDGWAYDIGYGGLDHVLASNEDINVLVMDTEVYSNTGGQASKATPTGSVAKFAAAGKPVKKKDLAAIAMSYGHIYVAQVSMGANQQQFIKAVKEAEAHQGPSIIIAYSPCINHGIKKGMSKSQTEMKLATECGYWPIFRYNPSLEKIGKNPLQIDSKEPKWEKYEEYLTGEVRYQTLAKSNPEEAKNLFETNKKDAQKRWRQYKRMAALDYSEEKEAE
>NZ_CP028101.1|WP_011016957.1|1835093_1836050_-|L-lactate-dehydrogenase
MLQTRKVGIVGIGHVGSHCALSMLLQGVCDEMVLMDIIPEKAKAHAIDCMDTISFLPHRAIIRDGGIQELSKMDVIVISVGSLTKNEQRLEELKGSLEAIKSFVPDVVKAGFNGIFVTITNPVDIVTYFVRELSGFPKNRVIGTGTGLDSARLKRILSEVTNIDSQVIQAYMLGEHGDTQIANFSSATIQGVPFLDYMKTHPEQFKGVELSVLEKQVVRTAWDIISGKNCTEFGIGCTCSNLVKAIFHNERRVLPCSAYLNGEYGHSGFYTGVPAIIGSNGVEEILELPLDERERKGFEDACAVMKKYIEVGKSYKIV
>NZ_CP028101.1|WP_011016956.1|1834164_1835073_-|MFS-transporter
MQSKESNIKLLLLGRVVSLFGNTIYLIVLPLYILNITQNLKTTGIFFASINLPTIIISPLIGTLIEKFNKKNIILICDFLTSMLYFIPFLYFKNSNSVIFLLIVSLILNIISKFFEIASKVLFSEINTPETLEKYNGLQSFLENAVMIFGPVVGTYLFATFTFNFVLIIISLAYFLSFLQELFIKYEKNTNLSKEKSSFFKDFKEGISYIKSKKIIFNFFILAMFLNFFIANNDEIINPGILIKKYQISEKLFGFSVACYGLGSVVAGYLSSYIGADVTYIIDNVAIIIIVFLVFKNIERDC
>NZ_CP028101.1|WP_011016955.1|1833101_1834121_+|galactose/methyl-galactoside-ABC-transporter-permease-MglC
MIARTNEGKIDYKKIIIESGLYLVLFCMLVAIIIKEPTFLSLRNFKNILTQSSVRTIIALGVAGLIVTQGTDLSAGRQVGLSAVISGTLLQSMTNVNKAFPKLGEFSIFTTILIVVVVGVVIASINGVVVATLNVHPFIATMGTMTIVYGINSLYYDKAGAAPISGFVEKYSKFAQGYIKIGSYTIPYLIIYAAIATLIMWTLWNKTKFGKNVFAVGGNPEAAKVSGVNVVLTLMGIYALSGAYYAFGGFLEAGRIGSATNNLGFMYEMDAIAACVIGGVSFYGGVGRISGVITGVIILTIINYGLTYTGVSPYWQYIIKGIIIVTAVAFDSIKYAKKK
>NZ_CP028101.1|WP_005903113.1|1831576_1833079_+|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA
MENLKYVLEMENISKEFPGVKALDDVQLKLKPGTVHALMGENGAGKSTLMKCLFGIYEKNSGKILLDGVEVNFKSTKEALENGVSMVHQELNQVLQRNVLDNIWLGRYPMKGFFVDEKKMYNDTINIFKDLDIKVDPRKKVADLPIAERQMIEIAKAVSYKSKVIVMDEPTSSLTEKEVDHLFRIIKKLKESGVGIIYISHKMEEIKMISDEITILRDGKWISTNDVSKISTEQIISMMVGRDLTERFPKKDNKAKEMILEVKNLTALNQPSIQDVSFELYKGEILGIAGLVGSKRTEIVETIFGMRPKKHGEIILNGKTVKNKSPEDAIKNGFALVTEERRSTGIFSMLDVAFNSVISNLDRYKNKFRLLKNKDIEKDTKWIVDSMRVKTPSYSTKIGSLSGGNQQKVIIGRWLLTEPEVLMLDEPTRGIDVLAKYEIYQLMIDLAKKDKGIIMISSEMPELLGVTDRILVMSNGRVAGIVKTSETNQEEIMELSAKYL
>NZ_CP028101.1|WP_005903112.1|1830461_1831487_+|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB
MKKFGMLLGSIILASALVACGEKKEEAKTDAPATEKLSIGLTAYKFDDNFIALFRKAFEAEAAAKADIVAVTAIDSQNSVATEKEQIEAVLEKGVKAFAINLVDASAADGIINLLKEKDVPVVFYNRKPSDEAIASYDKLFYVGIDPNAQGIAQGELIEKLWKENPDLDLNKDGVIQYVMLTGEPGHPDAVARTKYSISTLNDHGVKTEELHQDTAMWDTATAKDKMDAWLSGPNGSKIEVVICNNDGMALGAVESMKAAGKVLPTFGVDALPEALVKIEAGEMAGTVLNDAKGQASATFNMVVNLAQGKEATEGTDLKLDNKIILIPSIGIDKSNVADFK
>NZ_CP028101.1|WP_005903111.1|1829317_1830265_+|ROK-family-protein
MKHYIGIDLGGTNTKIGVVDSEGNLINSKIIKTHSHQNVDKTLERIWETAKKLILEKEIPLFSVVGIGIGIPGPVKNQSTVGFFANFDWEKNLNLKEKMEKLSGIETRIENDANIIAQGEAIFGAAKGKKSSITIAIGTGIGGGIFYNGNLISGMSGVGGEIGHMKVVKDGKTCGCGQNGCFEAYASASSLVKEAKERLKLNEDNLLFKEINGDLDELEAKNIFDAARKGDQFSKDLIEYESDYLALGIGNLLNIINPECIVISGGISLAGDEILLPIKEKLKKYTMPPALENLEIKIGTLGNEAGVKGAVALFI
>NZ_CP028101.1|WP_005903132.1|1845019_1845340_-|CRISPR-associated-endonuclease-Cas2
MKRNINLFKCGGDKMYVVVVYDISLDEKGSRNWRKIFGICKRYLHHIQNSVFEGELSEVDIQRLKYEVSKYIRDDLDSFIIFKSRNERWMEKEMLGLQEDKTDNFL
>NZ_CP028101.1|WP_147373174.1|1845302_1846295_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRSFFLYSNGTLKRKDNTITFINEKDEKRDIPIEMVDDFYVMSEMNFNTKFINYISQFGIPIHFFNYYTFYTGSFYPREMNISGQLLVKQVEHYTNEQKRVEIAREFIEGASFNIYRNLRYYNGRGKDLKLYMDQIEELRKHLKEVNNVEELMGYEGNIRKIYYEAWNIIVNQEIDFEKRVKNPPDNMINSLISFVNTLFYTKVLGEIYKTQLNPTVSYLHQPSTRRFSLSLDISEVFKPLIVDRLIFSLLNKNQITEKSFVKDFEYLRLKEDVSKLIVQEFEDRLKQIITHKDLNRKISYQYLVRLECYKLIKHLLGEKKYKSFQMWW
>NZ_CP028101.1|WP_011016964.1|1846306_1846801_-|CRISPR-associated-protein-Cas4
MDKNITGLMVYYYEVCKRKLWYFVNEIQLEENNSNVILGKLLEENTYTRDEKKINIDGIINIDFIRSKKVLHEIKKSNSIEPASLLQVQYYLYYLEKKGLIGLKGILDYPLLKQTVEVNLTDKDRENLDNIIIGIKEILRKESPPALEKKSICKKCAYFDLCFV
>NZ_CP028101.1|WP_011016965.1|1846843_1849282_-|CRISPR-associated-helicase/endonuclease-Cas3
MLDEELLKKYKAKSNKSIFEHNQDLKKQKDVLINLGYLNDKEKIELLSYAIDYHDSGKFNLKFQRRIEENIKRINGEKYNSKYLKFDKENEIEHNILSAFLINSQDFNSEKEYLAVLYSVIFHHRYSDAISTINNQIFPNIEEILEDNLPNGVVTYEGDIPLELNFQDLNTVENIKLLGLLMKCDHSASGGYEIEYPNDFLEEALNNLLNEFKEKDKSADWNDMQKFCKENSDKNIIAIADTGMGKTEGGFLWGGNNKIFFVLPLRTAINAMYKRVKLFVPKNKILEEKVGLLHSNSLEYYLNNKKELVIDDKDEKEMDILEYNKRGKHLSLPVTICTPDQIFNFILKYKGYESKLATLSYSKIILDEMQMYDASLLAAVIFGITKIIEMGGKIAIVTATFPPIIEYFLNKYLMKGNKKAIKDLDKPEEVVEEPIFIKKKFTNNEKIRHNIVLIDDEIGVEQILWKFRKNRKENKKSNKILVICNTIKKAQEIYLKLKEEDDLKDKINMLHSNFIREDRENKEKEILDFGKTEFDGEGIWISTSLVEASLDIDFDYLFTELQDLNSLFQRFGRCNRKGKKLVDEANCFIYLKIEDKYLKEKGSKYGFIDKDIYENSKKGLENYYEVVSKDEIENSQDYSELFKNYSKQINEGDKIKLIEENLSFENLKESNFVDEFEKAYEKYQRILNSDENSQDALKLRDIQSVTVIPYDIYEENEENIKELIKKIEDKNLGLEERQNAKTELLKKTLSIQYYQLSKYISEILKGKADANKYKSESINKFEKITVMEADYDKELGFRAKDFKDGIPTYEFI
>NZ_CP028101.1|WP_021779469.1|1849370_1850471_-|CRISPR-associated-protein-Cas5
MEALRIILKQSSANYRKAGTVDNKMTYPLPIPSTIIGALHNICEYTEYHSMDISIQGKFTSLSKRVYTDYCFLNSALDDRGNLVKVVDPDTFSGAFVKVASAKKSQGNSFKDRITIQVHNEELLQEYCSLKEKSKEIEELKNSEYKKKLEEFKALKKEIADKKKKEDKKLETFKQLSEEEKKVKLEEEKYKEDFKKFEYESYTKPYSYFQNLVTSLKNYEILNDIFLILHIKANKQTLKDIEENIYNLQSLGRSEDFVEVVECKMVELQEFSRNIRVSKFSMYLKNEDVSDKKIIPLAVDQDHQAGGTKYYLDKNYKLEKNRRIFKKVPVIYSNFIGAKNSSENVKLDYLEILSQDKKQEILVNFL
>NZ_CP028101.1|WP_011016967.1|1850483_1851386_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKKNALTITVVANMTSNYSEGLGNISSVQKIYRDRNVYAIRSRESLKNAIMVQSGMYEDLETEANGATQKKVDENLNATNCRALEGGYMNTKENTYVRNSSFYLTDAISTESFINETRFHNNLYLATNYANTHTDKNGKTLNVQKDAGEVGLMPYQYEYEKSLKVYSLTIDLEKIGKDPNFPNKEANNNEKFERVKSLLEAVENLSLVVKGNLDNAEPVFAIGGLSLRKTHYFENVVRVEQGALILGEALKEKKEDGFSCALLKGDIFTNEVEIIKELQPISMREFFKSLIEDVKNYYGA
>NZ_CP028101.1|WP_011016968.1|1851398_1852952_-|type-I-CRISPR-associated-protein-Cas8a1/Csx8
MKYDIDKNEYSFDTAISASDWKYSAAITGLIYYFKELEKKYEIKKITIDEITDSYLLYNKEDINEENYLDFIEKFYSKYSEDTLAHKKLENQLKHTKEFTSEIIKSIKENMSANTVLKKVFSKTKFDGTNKDEVLKLLDENRHSIIKETFRNKKDLYDNYCQTSRLLEKGDNSPCRLKGYYFDPNRKSKATGYNFVSSSVDYFDDEIFDFIPFAFTGSSFETIFLNDNLDLEILENMNYKLREYFSEEKENETERLKSLKQEKAIKEKKNEETEGNQNSVPLKKLFLNILQKKVDYIKYGMEIIYKNRDKEYFETWYLRNESIKVLKEIEDFSKLDIRIKITDKYYFNLLDEVFSAVLNLSLLTNSILYLLKDRESFIKIDTTRENLSKLFKYNYAINELIKVNQIIRNGGKEMDENLKKSIKACSIAVVKKFIKENSLNKLASYRQKLLSSVVAKNHKRILDVLTQLSVYSGVYFSFAFDYIENQTQNEDIIHYFILELDQSRLESKKNKENEDKE
>NZ_CP028101.1|WP_011016969.1|1852941_1853694_-|CRISPR-associated-endoribonuclease-Cas6
MRFILNFELDTVIIPVEIKRTIISFFKKSLTEAHNSKYYPEFFTGTQIKDYSFSVIFPLDKYFGEEIYLKRPEMKVLVSCSEKNNIGFLLVNVFLSQRNKKFPLPKDTHMILKDVRIIEEKIIKEEEAVFQTTIGGGVVVREHNKEENKDIYYSVGNERFEEVLNWLMKERFKRLRYPEDIFKDFSCELLEGRKIVVKHFDLKFPVTTGRFKVKAPKILLEEIYRTGMGSRLSQGFGLLEYLGGEIKDEV
>NZ_CP028101.1|WP_011016970.1|1853721_1854621_-|Abi-family-protein
MSYSEIHLSYEAQLNRFISRGMLVKNRTKALERLKHISYYKIKQFSTFFMDNSGNYKQNTSFEAVIQNFYFDKNLRMEFLKCSEKIELSIKNKIAYLLGVKYGAFGYLNFSSWCDRTRPKQEIQNEESKFKKKIQNKMKLFSDNSIIKDFVINNPTETYLSIWRLSEVLTFGEALYLFEMMSQKNKVSIARTYNLKVDEFTSYVNNIKLVRNLCAHNMSIIHLKLRTIPKMNTDFSNILNRYDRIFSSILIIIYFIKNINPNYQFKTLYHTVCQLIKRNKVAKIYGIKNYKLLKKYIKS
>NZ_CP028101.1|WP_011016971.1|1855076_1855835_-|NAD-dependent-protein-deacylase
MDSKRDEKILELVKILKNTKYLVFFGGAGTSTDSGVKDFRGKDGLYKTLYKDKYRPEEVLSSDFFYSHRDIFMKYVEKELNIKGLKPNKGHMALVELEKIGILKAVITQNIDDLHQVSGNKNVLELHGSLKRWYCLSCGKTADRNFSCECGGVVRPDVTLYGENLNQSVVNEAIYQLEQADTLIVAGTSLTVYPAAYYLRYFRGKNLIIINDMDTQYDGEASLVIKDNFSYVMDRVVKELKKIQFGKTLKNI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028101_1	1.1\|3953\|24\|NZ_CP028101\|CRT	3953-3976	24	MN582102	Siphoviridae sp. cttb18, complete genome	25841-25864	3	0.875
NZ_CP028101_1	1.3\|4037\|24\|NZ_CP028101\|CRT	4037-4060	24	NZ_CP011119	Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence	90238-90261	3	0.875
NZ_CP028101_1	1.3\|4037\|24\|NZ_CP028101\|CRT	4037-4060	24	MH617083	Microviridae sp. isolate ctca675, complete genome	4027-4050	3	0.875
NZ_CP028101_1	1.3\|4037\|24\|NZ_CP028101\|CRT	4037-4060	24	NC_010377	Yersinia enterocolitica plasmid pYE854, complete sequence	5531-5554	3	0.875
NZ_CP028101_1	1.5\|4121\|24\|NZ_CP028101\|CRT	4121-4144	24	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	16104-16127	3	0.875
NZ_CP028101_1	1.5\|4121\|24\|NZ_CP028101\|CRT	4121-4144	24	NZ_CP010107	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-1, complete sequence	5562-5585	3	0.875
NZ_CP028101_1	1.5\|4121\|24\|NZ_CP028101\|CRT	4121-4144	24	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	233788-233811	3	0.875
NZ_CP028101_1	1.1\|3953\|24\|NZ_CP028101\|CRT	3953-3976	24	NZ_AP022840	Legionella sp. TUM19329 plasmid pTUM19329-1	117512-117535	4	0.833
NZ_CP028101_1	1.1\|3953\|24\|NZ_CP028101\|CRT	3953-3976	24	MW067003	CrAssphage sp. C0531BW4, complete genome	18695-18718	4	0.833
NZ_CP028101_1	1.4\|4079\|24\|NZ_CP028101\|CRT	4079-4102	24	NZ_CP033095	Escherichia coli strain CP53 plasmid pCP53-92k, complete sequence	67120-67143	4	0.833
NZ_CP028101_1	1.5\|4121\|24\|NZ_CP028101\|CRT	4121-4144	24	NZ_CP045610	Bacillus cereus strain SB1 plasmid p4, complete sequence	3150-3173	4	0.833
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NC_015910	Borreliella bissettii DN127 plasmid cp32-7, complete sequence	27130-27165	7	0.806
NZ_CP028101_4	4.5\|1844027\|35\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844027-1844061	35	MN856077	Bacteriophage sp. isolate 40, complete genome	17008-17042	8	0.771
NZ_CP028101_4	4.1\|1843764\|37\|NZ_CP028101\|CRT	1843764-1843800	37	MN693910	Marine virus AFVG_250M312, complete genome	27629-27665	9	0.757
NZ_CP028101_4	4.5\|1844027\|35\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844027-1844061	35	MT375521	Pelagibacter phage Eistla EXVC0, complete genome	35335-35369	9	0.743
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	81515-81550	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	5944-5979	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	64575-64610	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	5944-5979	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP017417	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence	37373-37408	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	19519-19554	9	0.75
NZ_CP028101_4	4.7\|1844157\|36\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844157-1844192	36	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	76297-76332	9	0.75
NZ_CP028101_4	4.15\|1844694\|34\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1844694-1844727	34	NC_019529	Vibrio phage pVp-1, complete genome	35918-35951	9	0.735
NZ_CP028101_4	4.4\|1843962\|35\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1843962-1843996	35	NZ_CP047445	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8	11397-11431	10	0.714
NZ_CP028101_4	4.4\|1843962\|35\|NZ_CP028101\|CRT,CRISPRCasFinder,PILER-CR	1843962-1843996	35	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	90085-90119	10	0.714

1. spacer 1.1|3953|24|NZ_CP028101|CRT matches to MN582102 (Siphoviridae sp. cttb18, complete genome) position: , mismatch: 3, identity: 0.875

atgataataaagccattgaaaagg	CRISPR spacer
ttgataataaagccattgatacgg	Protospacer
 ****************** * **

2. spacer 1.3|4037|24|NZ_CP028101|CRT matches to NZ_CP011119 (Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcaaaataaagccagtaaaataa	Protospacer
**** **** *************

3. spacer 1.3|4037|24|NZ_CP028101|CRT matches to MH617083 (Microviridae sp. isolate ctca675, complete genome) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcataatatagccagaaacataa	Protospacer
**************** ** ***

4. spacer 1.3|4037|24|NZ_CP028101|CRT matches to NC_010377 (Yersinia enterocolitica plasmid pYE854, complete sequence) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcaaaataaagccagtaaaataa	Protospacer
**** **** *************

5. spacer 1.5|4121|24|NZ_CP028101|CRT matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
tgaaaaatacagttagtgtatttt	Protospacer
* **************** ****

6. spacer 1.5|4121|24|NZ_CP028101|CRT matches to NZ_CP010107 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
gtaaaaatacagttagtagattaa	Protospacer
 ****************.**** *

7. spacer 1.5|4121|24|NZ_CP028101|CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
tgaaaaatacagttagtgtatttt	Protospacer
* **************** ****

8. spacer 1.1|3953|24|NZ_CP028101|CRT matches to NZ_AP022840 (Legionella sp. TUM19329 plasmid pTUM19329-1) position: , mismatch: 4, identity: 0.833

atgataataaagccattgaaaagg	CRISPR spacer
ttgataataatgccattgaaaaca	Protospacer
 ********* *********** .

9. spacer 1.1|3953|24|NZ_CP028101|CRT matches to MW067003 (CrAssphage sp. C0531BW4, complete genome) position: , mismatch: 4, identity: 0.833

atgataataaagccattgaaaagg	CRISPR spacer
atgataataaagctattgaaacta	Protospacer
*************.*******  .

10. spacer 1.4|4079|24|NZ_CP028101|CRT matches to NZ_CP033095 (Escherichia coli strain CP53 plasmid pCP53-92k, complete sequence) position: , mismatch: 4, identity: 0.833

gcaataatgcagctgatggggtaa	CRISPR spacer
atgataatgcagctgatggggaaa	Protospacer
...****************** **

11. spacer 1.5|4121|24|NZ_CP028101|CRT matches to NZ_CP045610 (Bacillus cereus strain SB1 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.833

ttaaaaatacagttagtggattta	CRISPR spacer
gtaaaaatacagttagtagattag	Protospacer
 ****************.**** .

12. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NC_015910 (Borreliella bissettii DN127 plasmid cp32-7, complete sequence) position: , mismatch: 7, identity: 0.806

--aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
aagaattaa--aggaaaaattaaaagataaagaaaaat	Protospacer
  .****.*  ******* ******.***********

13. spacer 4.5|1844027|35|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to MN856077 (Bacteriophage sp. isolate 40, complete genome) position: , mismatch: 8, identity: 0.771

cttagaacaaagagcagaattattaaaaaattctc	CRISPR spacer
tatgaaacaaagagaagaattattaaaaaagcatc	Protospacer
. *..********* *************** . **

14. spacer 4.1|1843764|37|NZ_CP028101|CRT matches to MN693910 (Marine virus AFVG_250M312, complete genome) position: , mismatch: 9, identity: 0.757

ttattctttccctgcaatcatttatatcttgttcgat	CRISPR spacer
catatttttccctgaaatcatttatatcttcttctct	Protospacer
.   *.******** *************** ***  *

15. spacer 4.5|1844027|35|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to MT375521 (Pelagibacter phage Eistla EXVC0, complete genome) position: , mismatch: 9, identity: 0.743

cttagaacaaagagcagaattattaaaaaattctc	CRISPR spacer
cattaaacaaagagctaaattattaaaaaataaag	Protospacer
* * .********** .**************

16. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

17. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

18. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

19. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

20. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

21. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

22. spacer 4.7|1844157|36|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

23. spacer 4.15|1844694|34|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NC_019529 (Vibrio phage pVp-1, complete genome) position: , mismatch: 9, identity: 0.735

ctgttgattcaaataataaattagttggaagtag	CRISPR spacer
ctcacgtttcaaataataaagtagttggcaggct	Protospacer
**  .* ************* ******* **

24. spacer 4.4|1843962|35|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047445 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8) position: , mismatch: 10, identity: 0.714

gaagtgcttttgtagaatatttaaagtattgaaaa	CRISPR spacer
atcttgctcttgtaaaatatttaaagtattaactt	Protospacer
.   ****.*****.***************.*

25. spacer 4.4|1843962|35|NZ_CP028101|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 10, identity: 0.714

gaagtgcttttgtagaatatttaaagtattgaaaa	CRISPR spacer
atcttgctcttgtaaaatatttaaagtattaactt	Protospacer
.   ****.*****.***************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1641651 : 1649182

Prochlorococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011016803.1\|1641651_1643166_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.9e-59	43.0
WP_011016804.1\|1643191_1643962_-	hypothetical protein	NA	NA	NA	NA
WP_011016805.1\|1644000_1644810_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011016806.1\|1644829_1645372_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	7.2e-19	34.6
WP_011016807.1\|1645359_1646379_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	6.0e-67	44.4
WP_011016808.1\|1646378_1647725_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	9.7e-49	31.3
WP_011016809.1\|1647769_1648483_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.5e-43	42.8
WP_011016810.1\|1648708_1649182_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.8e-25	48.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028101

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection