CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028103	Fusobacterium varium ATCC 27725 chromosome, complete genome	10 crisprs	DEDDh,csm6,cas3,WYL,csa3,cas4,cas6,cas8b1,cas7b,cas5,cas1,cas2,DinG	1	10	3	0
NZ_CP028104	Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028103_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_1

231254-231361

Orphan

Consensus_repeat	Method
TTGAATTAGAACTTCCATTTATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_1

>merge|NZ_CP028103|1|231254-231361|CRISPRCasFinder
TTGAATTAGAACTTCCATTTATTGTCCCATTGTTTTCTATACTTTCTACTTTTCCATCATTAACATATATTCCATAAGCTTTGTTTGAATTAGAACTTCCATTTATTG

>NZ_CP028103|1|1|231254-231361|CRISPRCasFinder
TTGAATTAGAACTTCCATTTATTG	TCCCATTGTTTTCTATACTTTCTACTTTTCCATCATTAACATATATTCCATAAGCTTTGT
TTGAATTAGAACTTCCATTTATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005950880.1\|227220_227796_+\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100
NZ_CP028103.1\|WP_005952192.1\|238143_239010_+\|DUF4438-domain-containing-protein	unknown	unknown	gnl\|CDD\|379630
NZ_CP028103.1\|WP_005952187.1\|240495_241359_+\|DUF2262-domain-containing-protein	unknown	unknown	gnl\|CDD\|378356
NZ_CP028103.1\|WP_005952185.1\|241390_242251_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133382
NZ_CP028103.1\|WP_005952199.1\|234008_235361_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
NZ_CP028103.1\|WP_005952189.1\|239087_240233_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP028103.1\|WP_005950879.1\|227855_228125_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_005950882.1\|224156_225614_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP028103.1\|WP_005952196.1\|237019_237289_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_CP028103.1\|WP_005952194.1\|237447_237870_-\|CGGC-domain-containing-protein	unknown	unknown	gnl\|CDD\|198146
NZ_CP028103.1\|WP_005950881.1\|225643_227089_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP028103.1\|WP_005950888.1\|220984_222607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_107123187.1\|232489_232903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950883.1\|223839_224130_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|223793
NZ_CP028103.1\|WP_107123186.1\|232088_232328_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005952197.1\|235629_236988_-\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_CP028103.1\|WP_174714984.1\|223113_223815_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP028103.1\|WP_005950890.1\|219915_220962_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP028103.1\|WP_005950886.1\|222590_223127_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP028103.1\|WP_005950878.1\|228117_228411_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|223847

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005950880.1\|227220_227796_+\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	2.13374e-59
NZ_CP028103.1\|WP_005952187.1\|240495_241359_+\|DUF2262-domain-containing-protein	gnl\|CDD\|378356	pfam10020, DUF2262, Uncharacterized protein conserved in bacteria (DUF2262). This domain, found in various hypothetical bacterial proteins, has no known function.	3.63144e-11
NZ_CP028103.1\|WP_005952185.1\|241390_242251_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.5321e-26
NZ_CP028103.1\|WP_005952199.1\|234008_235361_-\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.98655e-151
NZ_CP028103.1\|WP_005952189.1\|239087_240233_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	5.12315e-147
NZ_CP028103.1\|WP_005950879.1\|227855_228125_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	9.44502e-20
NZ_CP028103.1\|WP_005950882.1\|224156_225614_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP028103.1\|WP_005952196.1\|237019_237289_-\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	4.35827e-39
NZ_CP028103.1\|WP_005952194.1\|237447_237870_-\|CGGC-domain-containing-protein	gnl\|CDD\|198146	smart01078, CGGC, This putative domain contains a quite highly conserved sequence of CGGC in its central region. The domain has many conserved cysteines and histidines suggestive of a zinc binding function.	1.00281e-29
NZ_CP028103.1\|WP_005950881.1\|225643_227089_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP028103.1\|WP_005952192.1\|238143_239010_+\|DUF4438-domain-containing-protein	gnl\|CDD\|379630	pfam14505, DUF4438, Domain of unknown function (DUF4438).	2.35136e-151
NZ_CP028103.1\|WP_005950883.1\|223839_224130_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|223793	COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis].	2.44801e-31
NZ_CP028103.1\|WP_005952197.1\|235629_236988_-\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_CP028103.1\|WP_174714984.1\|223113_223815_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.77632e-91
NZ_CP028103.1\|WP_005950890.1\|219915_220962_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP028103.1\|WP_005950886.1\|222590_223127_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	1.71133e-55
NZ_CP028103.1\|WP_005950878.1\|228117_228411_-\|HU-family-DNA-binding-protein	gnl\|CDD\|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	1.14625e-06

>NZ_CP028103.1|WP_005950878.1|228117_228411_-|HU-family-DNA-binding-protein
MTEGEFIRFYKKRNLSRSYKEVKEKIDIFWTVLLKALDEDGKVLLKDWGAFEKKEVAPRKIMTPRMEKAGLTRAGEKVRFRTGTGLKNLVNGADADE
>NZ_CP028103.1|WP_005950879.1|227855_228125_-|HU-family-DNA-binding-protein
MNKKELAKLYSAISQGKVSQKAALEEINVFTQTLQEALCKYNSVSFINIGVFEVLERKPRLVSNPSTREIMKIYPKKVVRFRASKNLIK
>NZ_CP028103.1|WP_005950880.1|227220_227796_+|rubrerythrin-family-protein
MSIRGTETEKNLLKSFAGESQARMRYTYFAEKAREEGYEQIANIFIETAENEKEHARRFFSFLEGGEGLEIQAAYPAGYVGTTLENLKMAAAGEHEEHSELYPHFAEVAEKEGFKVIAGVFRLISKVEIEHEKRYLKLLENVETDHVFKKDGTNRWKCILCGYVHEGPEAPAKCPVCLNPKAFFEIKETNY
>NZ_CP028103.1|WP_005950881.1|225643_227089_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MLREWESVIGLEVHLQLKTGTKVWCGCSADYDNADSNTHTCPICLGHPGALPKLNKKVVEYAVKAGLALNCKINNESGFDRKNYFYPDTPKNYQITQFDKSYAEKGSLEFKLNSGRMVKVGITKIQIEEDAAKSIHAEHESLINFNRASIPLIEIISEPDMRTSEEAYEYLNTLKSIIKYTGISDVSMELGSLRCDANISVMEKGSKVFGTRVEVKNLNSFKAVARAIDYEIGRQIETIENGGKIDQETRLWDEEAQTTRIMRSKEEAMDYRYFPEPDLLKLVITDEEIENIKKIMPESKADKLTRFISDYAIPEYDANILCEDIELADYFEAVVKTSNNPKLSSNWIMTEVMRNLKEKNITIDMFTISPEHLGEIIVLIEKNVISTKIAKELFEIKLTDDRAPEVIVKEKGMVQVADTGAIEAMIDEVINANPKMVEDYKNSDEGRKPRVIKGLIGQVMKLSKGKANPNMVTELMTKKLS
>NZ_CP028103.1|WP_005950882.1|224156_225614_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MENFYKLSAVEIKEKISKGEIKSEDVVREIFERIEKIDGNIGSFVHLRKEKALEEARKIDEKVKNGEKLGALAGIPVSIKDNMVSEGDISTSCSKILEGYTGIYDATAVKKLKEADAIIIGITNMDEFAMGSTTKTSCYKKTKNPWDTERVPGGSSGGAAASIAAQEAFISLGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLMAFASSLDQIGPIAKNVADIALCMNVIAGEDDYDATVSKKEVPDYTKFLGKDIKGMKIGVPKEYFIDGIKEDVRKIVNEALEKFRELGAEIIEISLPHTKYAVPTYYVLAPAEASSNLARFDGVRYGYRSKDIKNIDDLYINSRTEGFGDEVKRRIMIGTYVLSAGFYDAYFKKAQKVRKLIKDDFDKAFENVDIIFTPVSPSTAFKLDDVKTPIELYLEDIFTISANLAGIPGISIPAGLADGLPVGIQLLGKPFCEGELIQAGDAFEKIRGEWKLPVLD
>NZ_CP028103.1|WP_005950883.1|223839_224130_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALTREEVLNVAKLARLKFTPEEIEKFQVELNDILGYIDVLDEINTDEVKPLIQVNNTVNNLREDEVRESLSVEKALSNAPDSGDGAVIVPKVVGE
>NZ_CP028103.1|WP_174714984.1|223113_223815_+|pseudouridine-synthase
MRINKYLASLGIASRREVDKMIEEGSIKINGEKATPGIKVSDKDEIYIRGKKIEKHTEKKVYYILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDYNTSGLIILTNDGELFNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREKGKTELLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTNDEINYLYSL
>NZ_CP028103.1|WP_005950886.1|222590_223127_+|SMC-Scp-complex-subunit-ScpB
MSIQNKIEAILLLGGDEVKIKDLSKFFSLSIEEIMRVLEELKLERKNSGINIEFSGEFVYLVTNPLYGEFINQYFEHEAKPKRLSGAALETLSIIAYRQPITKSEVESIRGVSVDRIIQNLEEKKFVRVCGKKEGIGRANLYEITDKFLGYIGISSIDELPNYLEVKGRTEDGGNEDK
>NZ_CP028103.1|WP_005950888.1|220984_222607_+|hypothetical-protein
MKRFFLIFLMIHTFSYSNYLISNSEIVLFYDKNFNSVHFIKGDVFNPIDISKIEGKIIIDGKEIISINRFFNRTEMVPGTNILKLYYSINGQDIDVTIIPSMLEREKLYIIVDLKNLKTDKRIDFAFHIFPQQDNGNIEFIRASNSFVYGNHIFFKSENYGGQVFIGRDNVIENFVLEEVTTKTKKYQDDNLYYLISNINKNEPILFTFKFFDNFKNNNLVKSNDIISEEFNYWLGLKSEQRNFKNQESVITQLRMLDIITSRAVIPDSISYNNSKENLTNKMKLYYISSLFKNDFDERKMFVDINIRKTETESAAYYTYLFRYLNDQNKMFDSNFFNWKIKPEVLSMVDSIENNGEIFDGRDNIYNYYTQYKLLETISQLNEFNDDINWIKERKNLLHQFIIKNYTLKDGIKTRRTSEKSNYKNIAYLDILPKDNQKKILLSDYEKYYNKNSGVLTVRNEDVIDIEYNLNFIIKLYENGFKEMADNLLSNLEIIIEKNNSYIVPKIYLNKSNSAGIYGELLYLYLTAVQYRENNNEHTK
>NZ_CP028103.1|WP_005950890.1|219915_220962_+|rod-shape-determining-protein
MKRYFNKFLGFFSEDLGIDLGTSNTLICVKDKGIILNEPSVVAINTRTKDIFEVGERAKLMIGRTPNNLDTIRPLKNGVIADYEITEKMLSSFYKRVSHNRFFSSPRVIICVPAGVTQVEKRAVIEVTREAGAREAYLVEEPMAAAIGIGLNIFEPEGNMIVDIGGGTSELAVISLGGVVKTSSFRVAGDRFDTTIIEYIRQKHNLLIGEKTAEDIKKQIGAVVELEEDISIDISGRNALNGLPKDIKIYSSEIVEALSELLQQIIEEIKVILEKTPPELSSDIKRRGIYITGGGALLRGIDKKISESLNLNVTISEDPLNAVINGIQILLKNFHIYNKVLISPETDY
>NZ_CP028103.1|WP_107123186.1|232088_232328_-|DNA-binding-protein
MNSEEYIYRKLDTLSSLDRVLSEEMVKHLGEWTTIDDVAKYFKKHRNTICYKLEAGDILHRRIGTSILIYTRSLIFLLE
>NZ_CP028103.1|WP_107123187.1|232489_232903_-|hypothetical-protein
MENKGKTENQPFCQQEEKVLQLFRCRYEGKELDRFRNLHLTLTEIYSDFNGRDIKCYVETIANYSGLSKAWIPKGLKIFEELKLIQLVEERSKGKFKGKRLIFTPENIEKEEKNDDKKNVTEKASTGFSKTSEDNLY
>NZ_CP028103.1|WP_005952199.1|234008_235361_-|MATE-family-efflux-transporter
MNKFENDLSKGNVVKQLIKFSIPFLISNLIQTLYSVADMVIVGRYASTTSMSGVANGSQVQFVITNMVMGFTVGGTVLVAQYLGIGNRKAMKETISTLFTTLLLIAVVITTLMIFTMDPLLKLIQTPAEAFFETRAYFFVTTLGTIFIFGYNALSAVMRGMGDSKNPLYFVAIACVTNIILDLLLVAKYGMGAEGAAIATVISQAVSMILCIIYLKKNGFIFDFKLSSFKFYKDRFDLLLKIGIPTSAQNAIVSVSFLFLIALANTFGVSASAAVGAVSKLNSFAILPTVAVSASVSAMSAQNIGARQIRRAVQTLKTGIIFSLAISFIIFLFMRIFPEDCLSMFGEDKEMIKCGVEYLSAISYDYLLVPFVFCLNGLFIGAGHTKFSFINSASASLFIRIPACYFLGVFLNKGLYGLGLGAPLASMFGVIMGVVFFLSKKWMRAVIVKE
>NZ_CP028103.1|WP_005952197.1|235629_236988_-|PFL-family-protein
MISRVEIQETNRMIAEANLDVRTITMGISLIDCADPDINKFNENIYKKITTYAKDLVKVGDEIAKQFGVPVVNKRISVTPIAIAAAGCKTDSYVSIAKTLDKAAQECGVNFIGGFSALVQKGCTPSDRILIDSIPEALAVTERVCSSVNIGTSRNGLNMNAVKKMGEIIVKTAELTKDRDSIGCAKLVVFCNAVEDNPFMAGAFHGVGEADCVINVGVSGPGVVKRALMEVRDADFETLCEVVKKTAFKITRVGQIVAQEASRRLNVPFGIIDLSLAPTPAIGDSIAEIFQEMGLEHAGAPGTTAALAILNDNVKKGGVMASSYVGGLSGAFIPVSEDHAMIEAAKAGALTLEKLEAMTCVCSVGLDMIAIPGSTTAATISGIIADEAAIGMINNKTTAARLIPVIGKEVGDMVEFGGLLGYAPIMAVNKFSCENFIKRGGRIPAPIHSFKN
>NZ_CP028103.1|WP_005952196.1|237019_237289_-|ACT-domain-containing-protein
MKCIITVLGTDKVGIIAKVCTYLSDANVNILDISQTIVDGYFNMMMIVDITAPSKPMEVIGEELRQIGKVLGVIISMQHEDIFNCMHRI
>NZ_CP028103.1|WP_005952194.1|237447_237870_-|CGGC-domain-containing-protein
MDNTKLIVIIQCEIAKRRCSGFYCMDSFYKKDRAFSIYPKEQDIQYMMFECGGCCGKEISSLLGHLSRKLKEEDIIKKDEVVIHLASCMVTDNHHYDRCPHIDYIKNIIAKQGYRNVVEGTLLAKASEKKRELGMYKKYE
>NZ_CP028103.1|WP_005952192.1|238143_239010_+|DUF4438-domain-containing-protein
MIKTNKEFLVMQSVGGKVHSPTIASPYRISRDGDPMILPATGGISYNVKVGDSCMTWIGDHVEPGVSVKNDNVNENNALMVLGCIGNTAKVMTGDAKGATGFVTGGHGGIEHTLVYFDEETLEKLNIDDKILVKAFGQGLKIEGFDDVVCMNIDPTLLEKMNIKITEDGCLEVPVATEIPPYLMGSGVGSATAFSGDYDIMTGDKEANEKYGINELRFGDIVLLQDCNNCFGRDYLKGSVTIGVVVHSDCIKAGHGPGVTAIMSCSVSKIRGRKDKNANIAYYLGITK
>NZ_CP028103.1|WP_005952189.1|239087_240233_-|amidohydrolase
MELNLDFLLDDIVKNRRALHQMPETALEEFKTKEYLKNYLVSIGLEPHDIVETGLYVYIEGKDKNNCIAFRSDIDALNIEEENEIEFVSKNNGKMHACGHDGHMSTLLAFAKYLTTIQPLEKSVLLIFQPAEEAPGRAKDIVETGIFKKYNVKAIYGMHLFPELPEGVVACKEGPFFAQATVINVEITGKSGHGAMPHKAVDPLIAFTKVIDAYQTIISRNFSPFDPGVITIGKFSGGSAQNIIPEKVEFWGTARTFAQSDSEFIIKRMKEIHRGIELTYNVKIDENLVILYPPVINDKELYKKFTETMKDMDYREQDALTISEDFAYYQQEVPGIFFLLGTRNEEKGYIHPLHNCHFNFDEKVLLKGVEAFARILESHNK
>NZ_CP028103.1|WP_005952187.1|240495_241359_+|DUF2262-domain-containing-protein
MEKRLKIEFEALIEKEEYSKIIKKIKSIPSEDRDYEINSYMARAFSGERKFDSALKVLFSIEKEGISDPLWNYRVGFAYYSLEEFEKAQKYTKQSLELDSNDRWTIMLLRVLNKKLNIYEGTKTWNDLKTIDFKKSDVFTVEALFSIWKNDLADLYIDTEDNFTIDSFLPQIKNKLKWIEDNSQIIEKVLIDDGMLELAEDWASSAEEAEDEEQECYIMEDGEKVFFPISEKDFTDSLYVESITMNIKNNEISLEIFFCCCPDYFAGHCIIVEVNKEGNITNQSLAG
>NZ_CP028103.1|WP_005952185.1|241390_242251_-|MerR-family-transcriptional-regulator
MEDYLTIGEISKLTAVPISTLRYYDSEGIFSPALKDEKNNYRYYTGFQIPVLKIIIHLKKLGFSNESIKSHLKNLNYSHTLELITKIIEETKVEIKRLQRIEKELIQNADQVKQLIEIEEKIDTFFIEEMEEIKAVYTDISLDTDPKKIIQTAFKKLDISLSTSNSSEITKKIDVPLNNTTLPIGIYALIIPRENIENGNFKEEKIIFMRDVKSIEKKMILPKNRYACLYCKNRFRDRKEYVEKLLKWIKDNNFEITGDTIIHFLAGPGFVKDPKELLYAVKIPIK

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Crispr_ID: NZ_CP028103_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_2

1349318-1349428

Orphan

Consensus_repeat	Method
GAAATAACTAATTTAGATATTATATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_2

>merge|NZ_CP028103|2|1349318-1349428|CRISPRCasFinder
GAAATAACTAATTTAGATATTATATTTGAAATGTATGAAAAACCATATATAAAAAAAGAAGAAGAGGAAAAAAGTAGTTATCATGAAATAACTAATTTTGATATTATATTT

>NZ_CP028103|2|2|1349318-1349428|CRISPRCasFinder
GAAATAACTAATTTAGATATTATATTT	GAAATGTATGAAAAACCATATATAAAAAAAGAAGAAGAGGAAAAAAGTAGTTATCAT
GAAATAACTAATTTTGATATTATATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005949801.1\|1356908_1357127_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005949780.1\|1348025_1349060_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|223286
NZ_CP028103.1\|WP_005949807.1\|1358205_1358787_+\|response-regulator	unknown	unknown	gnl\|CDD\|226230
NZ_CP028103.1\|WP_005949776.1\|1345583_1345787_+\|glutaredoxin	unknown	unknown	gnl\|CDD\|239274
NZ_CP028103.1\|WP_005949805.1\|1357781_1358231_+\|EutP/PduV-family-microcompartment-system-protein	unknown	unknown	gnl\|CDD\|371185
NZ_CP028103.1\|WP_005949784.1\|1349929_1351111_+\|DUF3798-domain-containing-protein	unknown	unknown	gnl\|CDD\|378916
NZ_CP028103.1\|WP_039995773.1\|1340456_1341107_+\|CDGSH-iron-sulfur-domain-containing-protein	unknown	unknown	gnl\|CDD\|284351
NZ_CP028103.1\|WP_005949767.1\|1341754_1342450_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
NZ_CP028103.1\|WP_174715001.1\|1352763_1353786_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119320
NZ_CP028103.1\|WP_005949778.1\|1345786_1348033_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|180831
NZ_CP028103.1\|WP_005949791.1\|1353775_1354882_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119320
NZ_CP028103.1\|WP_005949765.1\|1341159_1341621_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP028103.1\|WP_005949774.1\|1344034_1345177_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP028103.1\|WP_005949799.1\|1356398_1356569_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|224071
NZ_CP028103.1\|WP_005949802.1\|1357433_1357775_+\|ethanolamine-utilization-microcompartment-protein-EutS	unknown	unknown	gnl\|CDD\|227147
NZ_CP028103.1\|WP_005949770.1\|1343240_1343447_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP028103.1\|WP_005949795.1\|1354881_1355241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_081462980.1\|1342708_1343197_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP028103.1\|WP_005949772.1\|1343492_1343843_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP028103.1\|WP_005949786.1\|1351157_1352753_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005949780.1\|1348025_1349060_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|223286	COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism].	5.92269e-123
NZ_CP028103.1\|WP_005949807.1\|1358205_1358787_+\|response-regulator	gnl\|CDD\|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	1.10362e-55
NZ_CP028103.1\|WP_005949776.1\|1345583_1345787_+\|glutaredoxin	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	8.76996e-10
NZ_CP028103.1\|WP_005949805.1\|1357781_1358231_+\|EutP/PduV-family-microcompartment-system-protein	gnl\|CDD\|371185	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways. PduV may be involved in the association of the bacterial microcompartments (BMCs) to filaments.	2.51641e-50
NZ_CP028103.1\|WP_005949784.1\|1349929_1351111_+\|DUF3798-domain-containing-protein	gnl\|CDD\|378916	pfam12683, DUF3798, Protein of unknown function (DUF3798). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 247 and 417 amino acids in length. Most of the proteins in this family have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families such as pfam02608, which suggests that this family have a similar role.	2.21567e-169
NZ_CP028103.1\|WP_039995773.1\|1340456_1341107_+\|CDGSH-iron-sulfur-domain-containing-protein	gnl\|CDD\|284351	pfam06902, Fer4_19, Divergent 4Fe-4S mono-cluster. Members of this family contain three highly conserved cysteine residues. This family includes proteins containing divergent domains which are most likely to bind to iron-sulfur clusters.	7.39573e-20
NZ_CP028103.1\|WP_005949767.1\|1341754_1342450_+\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	2.70147e-54
NZ_CP028103.1\|WP_174715001.1\|1352763_1353786_+\|ABC-transporter-permease	gnl\|CDD\|119320	cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.	2.40623e-26
NZ_CP028103.1\|WP_005949778.1\|1345786_1348033_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|180831	PRK07088, PRK07088, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP028103.1\|WP_005949791.1\|1353775_1354882_+\|ABC-transporter-permease	gnl\|CDD\|119320	cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.	9.1239e-43
NZ_CP028103.1\|WP_005949765.1\|1341159_1341621_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.99775e-14
NZ_CP028103.1\|WP_005949774.1\|1344034_1345177_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP028103.1\|WP_005949799.1\|1356398_1356569_+\|4Fe-4S-binding-protein	gnl\|CDD\|224071	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion].	1.88451e-09
NZ_CP028103.1\|WP_005949802.1\|1357433_1357775_+\|ethanolamine-utilization-microcompartment-protein-EutS	gnl\|CDD\|227147	COG4810, EutS, Ethanolamine utilization protein [Amino acid transport and metabolism].	1.74564e-58
NZ_CP028103.1\|WP_005949770.1\|1343240_1343447_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	8.32516e-17
NZ_CP028103.1\|WP_081462980.1\|1342708_1343197_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.47445e-71
NZ_CP028103.1\|WP_005949772.1\|1343492_1343843_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	7.24162e-52
NZ_CP028103.1\|WP_005949786.1\|1351157_1352753_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.65993e-176

>NZ_CP028103.1|WP_005949780.1|1348025_1349060_+|ribonucleotide-diphosphate-reductase-subunit-beta
MDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKNLTDQEKEAYDGILSFLIFLDSIQTNNIPNVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQRFLENPNDENFSKVIVADYLLEAIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQHLLKEIRNENPDFFNDEEIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYDGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWDEI
>NZ_CP028103.1|WP_005949778.1|1345786_1348033_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MREVINRAGIKENLDIIKIREKLIRACEGLEVNMVELESYIDSIYQENITTKKIQESLINQAVAMTSFEESDWTYVAGRLLMMETEREVFHKRGFSYGEFYKTIKTLTENGIYDNRLQEYTEDEIKELEKAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVFMCIAMLLAINEENRVLVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFYNIDTIAKISKSGGGVGLNVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRAGAVTVALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTLVDPYEVRIKYGVELCELYGEKFEEIYKALEKDTSLKLKKVIKARELFKEIMKVQIETGMPYIFFKDRANLMNHNNHKGMIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEVHTCNLVSLNLAEIAREELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIGVGTMGLADYLAREFMIYDESLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWDRGVFFQKNKDWYIKNSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMGATASVNPTFSRFYIEKNQKGAVPRVVKYLKDRAWFYPEFKNVNPQIYVEIMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWKNGCKSIYYIRTIQKNTNIMNEKEECESCSG
>NZ_CP028103.1|WP_005949776.1|1345583_1345787_+|glutaredoxin
MIKIFGKEGCSKCESLKKTLDNKGIKYEYIQDLKTLMTVASKNRIMSAPVVEKDGEYYPMERFLEVI
>NZ_CP028103.1|WP_005949774.1|1344034_1345177_+|iron-containing-alcohol-dehydrogenase
MIYYIPPINLLGRGCLAELKQPLSTMGCKKALVVSDKFLMGNGTIKKVTDILKEAGVDFVVYDEPKPNPTVKNVEDGYKILKDEKCDIVVSIGGGSPQDCGKAIAVLATNGGNIKDYEGVNKTKNKSLPIIAITTTAGTSAEVTINYVITDEERHVKMIMVDTNSLAAVTVNDPELMLSKPAPLTAATGMDALTHAIEAVVAKGAMDVTDCTALYAIKEIFDYLPRAVKDGNDIEAREQMCYSCFLNGIAFSNAGLGNVHAMAHQLGGLYDLPHGVCNAMLLPIVEEENAKNAPEKFRVIAQTIGYDVNGKTDKECVDYVIGRIKALSEEVGIPKSLKDVGVDNPDFELLAENAMKDACAGANPVYFDKEKLIELFKKIS
>NZ_CP028103.1|WP_005949772.1|1343492_1343843_+|50S-ribosomal-protein-L20
MRVKTGIVRRRKHKKILQAAKGFRGASGDVIKQAKQATMKAAAYSTRDRKVNKRRMRSLWIIRINSAARINGLTYSTLINGLKRAGIVLDRKVLADIALNNAAEFAKLAETAKAAL
>NZ_CP028103.1|WP_005949770.1|1343240_1343447_+|50S-ribosomal-protein-L35
MPKMKTHRGAKKRIKVTGTGKFIVKHSGKSHILTKKDRKRKNSLKKDLVVTDTLKKHMQGLLPYGVGR
>NZ_CP028103.1|WP_081462980.1|1342708_1343197_+|translation-initiation-factor-IF-3
MNEKIKGREFRIISSTGEQLGVMSANEALELARQEDLDLVEISPTAKPPVCKIMDFGKYRYEQTRKAKEAKKNQKQVVIKEVKVTARIDTHDLETKMGQIEKFLSKENKVKVTLVLFGRERMHATLGIDTLNEIAEKFAEVADADKKYNEKQKHIILTPKKS
>NZ_CP028103.1|WP_005949767.1|1341754_1342450_+|hypothetical-protein
MKRFIIEDKVFEMFPHLEIGVLSFKNIDNIGTGKTQMLENVCKSLYERLASGDEAERYIKEYSLAMKKFKTKKGAKASIEAMASRILKGHILGSINPLVDIYNVICLKNLVTCGGEDIDKIEGDMVLCFAKGDEEFIPLGEEENKPPKEGELIYRDDKGAVVRGWLWREADRTKITENTKNALLYMELIDENRKEEFRKIVKDLEELVLQELGGQCKSAIIDKNISVCEIG
>NZ_CP028103.1|WP_005949765.1|1341159_1341621_-|GNAT-family-N-acetyltransferase
MEIDIKAAYNDLENIKLLFNEYTTMLGVNLTFQGYDEEIKNLPGKYALPYGRLYIAYYNNKAAGCIALRKFENDGCEMKRLFVRPEYRHLKIGKKLVDKIIEDARELKYKYMVLDTLSKLHEAVSLYRKSGFQEVEAYYENPLDNVLYFKLEL
>NZ_CP028103.1|WP_039995773.1|1340456_1341107_+|CDGSH-iron-sulfur-domain-containing-protein
MAGDKEKKGMIVFTKFSPYTVVDTKIENYKGEKYEIPRTVSLCRCGHSKNKPFCDGTHARGVEFNNEREEEKTRGAKGYTGDKIIVYFDKYICKHAAKCVKGYPEVFNTEKIPWIEMKNATDIEKLIKVIKNCPSGALSYQLEGGERETVYHDIEKITIEKNGSINITGGVKVIDDNNSEEILDSKEHYSLCRCGHSKHKPFCDGTHKHIKFNDEE
>NZ_CP028103.1|WP_005949784.1|1349929_1351111_+|DUF3798-domain-containing-protein
MKKYFVGLFMFLFSLFSFAAEADYHIGVVSGTVSQSEDSLRGAEELVKMYGASDKGGMVTHVTYPDNFMQEMETTISQMVGLADDPKMKVILVAEAVPGTVEAFRRIREKRPDILLIANAPHEDPEIISDAADLVTNPDNVARGYLIVKAAKEMGATKFMHISFPRHLSYELLSRRRNIMAETAKDLGMEFIDMSAPDPVSDVGVAGAQQYILEQVPNWLEKYGKDTAFFATNDAHTEPLLKRVAEVGGYFVEADLPSPTMGYPGALGIKFSEDEKGNWPKILKKVEDTVVAKGGAGRMGTWAYSYNFISVIALGEHARAVIEKGVDATDFDSIMNSLKKFTPGAGWNGSNYTDVNGVEKDNFYLLYQDTYVLGKGYMNMTNETVPEKYFKIK
>NZ_CP028103.1|WP_005949786.1|1351157_1352753_+|sugar-ABC-transporter-ATP-binding-protein
MDKVLLKIEGLSKSFGENVVLKDINLEVKPGEIVGLVGENGAGKSTLMKAIFGMPVISETGGYGGKIIFNGEETNFKSPFDALAVGIGMVHQEFSLIPGFKANENIVLNRESTANSFLESLFGERIRRIDSKNIEKRANNAISQLGIEIDPDTVINEMPVAHKQFTEIAREIEREKTKLLVLDEPTAVLTEEEAKVLLETMRRLSEKGISIIFITHRLDEIMDICDTVVVLRDGLLINTVSTKDTNVNQITEWMIGRKMGESEEKIETLDDNKETILSVKNFWVDMPGEMAKGLNLDIKKGEILGLGGMAGQGKIGIANGIMGLYDSSGKVTFKGEIIKLNDPNNPLEKGIFFVSEDRKGVGLLLESSIEENIAYPAMQIQRKFFKKRFGGLFNLVDEEAMKENAQDYIKKLEIRCMSEKQKVQELSGGNQQKVCLAKAFTMDPEVLFVSEPTRGIDVGAKKLVLDTLKEYNSTKGTTIIITSSEIEELRSVCDRIAIINEGKVAGILPPTADILEFGKMMVGVLKEGNNE
>NZ_CP028103.1|WP_174715001.1|1352763_1353786_+|ABC-transporter-permease
MLKNAGWPRIIITLFLLSMYIVSPFIGINLKSALGDTLVRFGMNAILVLSLVPMIQSGTGLNFGMPLGVEAGLLGAVISIEMGLSGFAGFAGAIIISIPFAILFGWLYGHILNKVKGGEMMIATYIGFSSVAVMCIMWLILPFKSQDMIWAYGGEGLRTTISVESHWHKILDKVLHMPGDMLPLGEVVFFAILAFGMWIFFRSRTGYAMKAVGTNDKFAKATGININKIRVESVVMSTVLAAVGIVVYQQSFGFVQLYLAPFYMAFPAIAAILIGGASVNKVTIVNVIVGTFLFQGILTMTPSVVNNIIQTDMSETIRIIVSNGMILYALTRKEGAGSGK
>NZ_CP028103.1|WP_005949791.1|1353775_1354882_+|ABC-transporter-permease
MENKIKKFLVNNIVPIFMVIIILLSIPISGLSIEYLIQEIILRLSRNLFLVLSLLIPIIAGMGLNFGIVLGAMAGQIALIFITDWNIVGLQGFFLAVIITLPIAALMGYVGGIVLNRAKGREMITSMILGFFINGVYQLLVLYGMGKVIPIKNEAILLSRGHGIRNAIDLKNIRRALDDGIVFNIGQYSIPVLTILAIVLLCFFIVWFRKTKLGQDMRAIGQDIEVSKSSGIAVDRTRILAIVISTILAGIGQLIFLQNIGTMNTYNSHEQIGMFAIAALLIGGATVSKASIPNALSGVILFHTMFVLAPRAGKELIGSAQIGEYFRVFVSYGIIALVLILHQWRREKEKEAERKRILEMNSNQAGGN
>NZ_CP028103.1|WP_005949795.1|1354881_1355241_+|hypothetical-protein
MKIARNWIILIVVLLGIAAALFISGKQHRVFIDNKKVGEYTAIDVSYSINGEKAKKIRVNKKAMVYVKGPKHKLIIEFKDNTGKNVILENEFKLTPTEDATISLPLLINGEENWIKSDN
>NZ_CP028103.1|WP_005949799.1|1356398_1356569_+|4Fe-4S-binding-protein
MHVIDKDACIGCGACEGTCPVGAIAATDDGKYGISDACVDCGACAGGCPVSAISAE
>NZ_CP028103.1|WP_005949801.1|1356908_1357127_+|hypothetical-protein
MNAKEFCSCTDHKCPFNPINHDKGCDLCISKCLKLNEIPSCFFKKISTERPENEDYTFKGFADFTVKHWNKN
>NZ_CP028103.1|WP_005949802.1|1357433_1357775_+|ethanolamine-utilization-microcompartment-protein-EutS
MEKNRVIQEYVPGKQVTLAHLIAHPNKDICKKIGLNTETTQAIGILTITPGEAAIIAADIATKSGNIEIGFLDRFSGTLVINGDVSSVESSLKSVIDFLATTLKFSISELTRS
>NZ_CP028103.1|WP_005949805.1|1357781_1358231_+|EutP/PduV-family-microcompartment-system-protein
MKLMLVGKTGSGKTTLAQRINGMDINYKKTQMILFEDNIIDTPGEYIENKFYYKALTVTASNADIIAFVQSALDEDTLFPPKFSTMFTGKRIIGIITKKDLQLESSNAENFLKCAGAEEIYYIGLNDKNEIIRLKERLGIGDESKNSNS
>NZ_CP028103.1|WP_005949807.1|1358205_1358787_+|response-regulator
MKVRIVIAEDETLTRMDIAEMLNENGYEVVGEASDGLEALKICREKKPDILLLDVKMPLMDGLQTAKVLHEEGFSGCIIMLTAYNIKEYIHEATESSVMGYLIKPIDEEIFLSRLEMIYSTHMRLLRFKDEAEGARQKLEERKKIEKAKGILMKNKNISESEAYQEMRNISMKKRIALIDLAEIIILTGGILI

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Crispr_ID: NZ_CP028103_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_3

1906865-1906971

Orphan

Consensus_repeat	Method
AAAGAATATGAAAAATTGATAAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_3

>merge|NZ_CP028103|3|1906865-1906971|CRISPRCasFinder
TTAAAAAATCAAGAATTAAAAAAAGAATATGAAAAATTGATAAAAGAGAGAGTGAAAGAATTTGACAGCAAAAATGTGATGAAAGAATATGAAAAATTGATAGAAGA

>NZ_CP028103|3|3|1906865-1906971|CRISPRCasFinder
TTAAAAAATCAAGAATTAAAAAAAGA	ATATGAAAAATTGATAAAAGAGAGAGTGAAAGAATTTGACAGCAAAAATGTGATG
AAAGAATATGAAAAATTGATAGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005947287.1\|1904701_1905790_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP028103.1\|WP_005947310.1\|1916584_1917739_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP028103.1\|WP_005947291.1\|1906995_1907745_+\|LPS-biosynthesis-protein	unknown	unknown	gnl\|CDD\|182407
NZ_CP028103.1\|WP_005947307.1\|1915470_1916604_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP028103.1\|WP_005947302.1\|1912525_1913953_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|376414
NZ_CP028103.1\|WP_005947300.1\|1911442_1912471_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182223
NZ_CP028103.1\|WP_005947295.1\|1908869_1910048_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP028103.1\|WP_005947278.1\|1899499_1900720_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_CP028103.1\|WP_005947272.1\|1895944_1897336_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP028103.1\|WP_005947280.1\|1901384_1902263_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|183858
NZ_CP028103.1\|WP_005947267.1\|1895046_1895223_+\|FeoB-associated-Cys-rich-membrane-protein	unknown	unknown	gnl\|CDD\|378908
NZ_CP028103.1\|WP_005947285.1\|1903565_1904684_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP028103.1\|WP_005947276.1\|1898659_1899451_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP028103.1\|WP_005947304.1\|1913953_1915114_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP028103.1\|WP_005947270.1\|1895399_1895861_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_039995634.1\|1907864_1908845_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP028103.1\|WP_005947274.1\|1897434_1898469_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NZ_CP028103.1\|WP_005947298.1\|1910040_1911084_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182223
NZ_CP028103.1\|WP_005947284.1\|1902639_1903377_+\|LicD-family-protein	unknown	unknown	gnl\|CDD\|226006
NZ_CP028103.1\|WP_039995637.1\|1917731_1918493_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005947287.1\|1904701_1905790_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	6.6658e-29
NZ_CP028103.1\|WP_005947310.1\|1916584_1917739_+\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	6.77699e-73
NZ_CP028103.1\|WP_039995637.1\|1917731_1918493_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	9.25186e-61
NZ_CP028103.1\|WP_005947302.1\|1912525_1913953_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	7.35576e-101
NZ_CP028103.1\|WP_005947272.1\|1895944_1897336_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	2.02354e-137
NZ_CP028103.1\|WP_005947300.1\|1911442_1912471_+\|glycosyltransferase	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	2.68758e-39
NZ_CP028103.1\|WP_005947295.1\|1908869_1910048_+\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.4277e-05
NZ_CP028103.1\|WP_005947291.1\|1906995_1907745_+\|LPS-biosynthesis-protein	gnl\|CDD\|182407	PRK10359, PRK10359, lipopolysaccharide core heptose(II) kinase RfaY.	1.71159e-13
NZ_CP028103.1\|WP_039995634.1\|1907864_1908845_+\|hypothetical-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	3.37981e-09
NZ_CP028103.1\|WP_005947280.1\|1901384_1902263_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|183858	PRK13059, PRK13059, putative lipid kinase; Reviewed.	3.03484e-131
NZ_CP028103.1\|WP_005947267.1\|1895046_1895223_+\|FeoB-associated-Cys-rich-membrane-protein	gnl\|CDD\|378908	pfam12669, P12, Virus attachment protein p12 family. This family of proteins are related to Virus attachment protein p12 from the African swine fever virus. The family appears to contain an N-terminal signal peptide followed by a short cysteine rich region. The cysteine rich region is extremely variable and it is possible that only the N-terminal region is homologous.	0.00793007
NZ_CP028103.1\|WP_005947307.1\|1915470_1916604_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.98066e-52
NZ_CP028103.1\|WP_005947285.1\|1903565_1904684_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	8.95723e-43
NZ_CP028103.1\|WP_005947276.1\|1898659_1899451_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	4.12133e-99
NZ_CP028103.1\|WP_005947304.1\|1913953_1915114_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP028103.1\|WP_005947278.1\|1899499_1900720_-\|sodium/glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	2.53609e-135
NZ_CP028103.1\|WP_005947274.1\|1897434_1898469_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.23541e-49
NZ_CP028103.1\|WP_005947298.1\|1910040_1911084_+\|glycosyltransferase	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	2.6874e-32
NZ_CP028103.1\|WP_005947284.1\|1902639_1903377_+\|LicD-family-protein	gnl\|CDD\|226006	COG3475, COG3475, LPS biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.35441e-42

>NZ_CP028103.1|WP_005947287.1|1904701_1905790_+|glycosyltransferase-family-9-protein
MVRVRGFFIRLAGMKKKEKDIELKNIRRILIPGGRIGDMVCETPLIRELHNFFPEAEIDVYLDKIVTPLFKNCPYLNVIETKRGSRFVHRVKILRILSSWYDALLKRKKYDLYFDFTSGLRFYSIFALKIMKPRYSVGVFREEKHGIKKDELTIFDKYIETKKSNHMRDISLAGIEVLGKKVENRKYELFLGETEEKYKDYFPKENINIIFNYTGGNIKKNLSIEEVKESCKKLIEINEKIIIYVMVLPDKYEELEKEIKKWKEERIKICEKTEDILEAAAMIKYTNILVSVDTGVVHIASAYNIPVISIFPDNENSIEYFSPKSELSYVIKCKDRRWIKDFDKEEMKRDIKEIIDKLKWKV
>NZ_CP028103.1|WP_005947285.1|1903565_1904684_+|glycosyltransferase-family-9-protein
MLKKINRVFQDYMREKRLKLGKYIWDKKKNKEEIKSGNFIENNDIKKILFMRYDGKIGDMVINTLMFREIKKKYPYIEIGVVTKGGAKAVIENNPNIDKIYEYKKNRKSIKELSLEIAAEKYDLLIDFSEMLRVNQMMLINLCKARFNMGLNKENWKMFDISYTKPVDHIHITELYKNILEKLGIKNIEINYEVFFTEQQKNKVDELLKKLKHKKIIVFNPFAASKHRDINLENILKIGKIIIEDKNNILIFIGEEKRRKELEKILKELVYNAIFPVLKDIMETSYLISKADLVITPDTSIVHIAAAFKRKLIAIYRLDNRVENEVNRYLWAPNYKEAVQIFSRDFEVKNGEEPDINKFDMKEIKKEIKKVF
>NZ_CP028103.1|WP_005947284.1|1902639_1903377_+|LicD-family-protein
MDKLRELQLVEKDCLDFFVKICEENNLEYILDFGTLLGAARHKGFIPWDDDVDLGMPREDYERFLKIFEKYKNNGRFSLETYKRGAFYKLKDNNHYILNKDESKSEIDIDIFPLDYYDDVKKVDFLNGYLELSKDRSSVWRKWKTHFKREIHLKILSNSFFKKRFISKTKGPYIGRGVETGFKIKLNPVEKFFPLTEIEFEGKKYKAPKDYDNFLTLLYGDYMTPPENPAPLHHKHIKDIIKIEK
>NZ_CP028103.1|WP_005947280.1|1901384_1902263_-|YegS/Rv2252/BmrU-family-lipid-kinase
MKKVKFIYNPFSGENEILKHLDTIIYLYQQQSLEIVPFRISMETPLENAFLTLDENYDHILAAGGDGTINQIVNIIKNKNINLPLAILPVGTANDFAKHIGMSSNIEDSCKKILKGSPKNVDLGFVNGKYFINVFSYGLFTDISQKTPTHLKNTIGKLAYYFNGIMELPTFKKMNISVESSEFTYDGSALIFFVFNGRTAGNINIAYKSEIDDGLLDIIIVKGDTLTKTLTSLFQFFKGEHLEIPGSFIHFRTSKLKVSCDDNSIVTDIDGEPGPNFPLNISCIKDGIKIIY
>NZ_CP028103.1|WP_005947278.1|1899499_1900720_-|sodium/glutamate-symporter
MFEYKFNMAETLAIAAVLLCLGRWIKNKSEFLQKFFIPAPVVSGLIFSIFVFIGRQTETFQFDFDLTLQNFLMIAFFTTVGFMASFKLLAQGGVGVAVFLVVATGLVICQDAIGVALSKALGMNPLFGLIVGSVPLTGGHGTAGAFGATIEELGVVGARTAGFAAATYGLVMGCLIGGPVARRLMIKHNLKGEDSKAQDPDLKAEKVEVTEEKILNAVIIIAVAMGIGASIPPFVKAHTGWLIKGGLALPAYIGPMLVAALLRNIADTIKKPLPMKEIDIVGSISLSVFLSMALMTMKLWELVELAIPMIIILAIQTIFVILYTYFITYNVMRLPFIATKYDAAVMVTGHCGFGMGATPTAIANMESFTSVNGFSTKAFFIVPLVGALFIDFTNAAVITFFINMFQ
>NZ_CP028103.1|WP_005947276.1|1898659_1899451_-|glutamate-racemase
MKKNYNIGVFDSGVGGTTVLKRIIELLPNENIIYYGDNGNAPYGEKTTKEIQGFCLDIMDFFMMNNCKAVVIACNTATAASLDLIKGRYTVPVIGVISPGAKSAVETSTNKCIGVLSTPFTAASNAYADEIAKYSKTAKVYQEGCPELCPMIEAGWETFEDRETIIKNHISKFPRNVDTVVLGCTHYPIAREDIAKNFCGNIVDPAKETSIALYNTLKNSDLLSDSDAKGKIDFFVSGDKEKFKKVAEQFLGFEIKALYKIEK
>NZ_CP028103.1|WP_005947274.1|1897434_1898469_-|glycosyltransferase-family-9-protein
MKILVIRFKQIGDAVLSSAICNTLKKTFPNSEIDYVLYEHISPLFQKHKYIDNIISITKEEQKNPLKYISKVWKVTRKKYDIIIDIMSTPKSELFSLFSMNSKYRIGRAKKYRGLIYTDKVNEPKYAEDKVDKFLKLLDPLKKEYNLIYDNNYTLSITNEEKKIMKKRMEEAGIDFSRPMFVCAVNSRRPEKVYDVNKMILVIEHLIEKLNTQIIFYYSPNEKEFVKTVHKKLNNNINVFSNIKTDSIRELATLLSNCDMFFGNEGGPRHIAQSLDIPSFAIFSPSASKKEWLSNACERHQGVEPQDMPLYSHSLSREEKYALITPEYIIAKIEEIYNNFVKRG
>NZ_CP028103.1|WP_005947272.1|1895944_1897336_+|Na+/H+-antiporter-NhaC
MKKKQVSLYYALLPVVFLVVTLYYAVQVAKLDVHIPIFISAIFAALIAKISGCATWNELEDGVVDTIKMSMRAILILIIIGMVIGSWILSGVVPTMIYYGLKIIEPSVFLPVTVIICSIVSISTGSSWSTASTVGIALVGIGEGLGLPRPIIAGAIISGAYFGDKLSPMSDTTTLAPAMAGSNLFEHIKHMLYTTVPSYALTLVGFVVIGLKKTAGGEVDTAQINEILNALTGSFKINPLLLLIPIFVIGMVIMKVPAIPGLFVGSLIGAVTAMVVQGSSLKEALYSLHYGYVGHTGMPMVDELLTRGGLDSMMWTVSLVLCAMTFGGIMEKSGMLGRIAQEILKFANTNGKLILSTILTPIFVNLVAGDQYLSIVIPGRMFKESYEERGLAAKNLSRALEDSGTMTSPLVPWNTCGAFMMGALGVGPWVYVPYCFFNLISPVLSVIYGFTGFTIEKIKKENK
>NZ_CP028103.1|WP_005947270.1|1895399_1895861_+|hypothetical-protein
MDNLTLGVIGAVIVIGLLTIFKFSGKKEKEENKDEIRIYYRYAGDIEWIRYEIERYRFGSLKYLFSCKNKEESDFQIIINNTETDISADFYATEFNYSKKYSLECIVKDLKLTDEKYDELMENLKDTYIEDNHDGKAIEKIKKNTEEEVKEII
>NZ_CP028103.1|WP_005947267.1|1895046_1895223_+|FeoB-associated-Cys-rich-membrane-protein
MKTIILIIIVAVIAFYSLRSVYRMLKGEESSCGCGSGSCKGCGTKGKCSGHEHSHEHK
>NZ_CP028103.1|WP_005947291.1|1906995_1907745_+|LPS-biosynthesis-protein
MIKNEKYKEYNIYYPEKEIFYKELGEKIVDKQYEELEVYKNTERNYVAKIEVEGKKYILKSPKSETIIPQRRVQTLIKNGEALNTLINVRKRVKEGMKEYAVPFLAIVKKGIFIRESYILMECIEGEPIKSVADIDEIMKIVNKLHKEEIYHGDLNTSNFIKTKNGMRIIDTQGKKEKYFYFKRWNDLFIMKNDLLVIEKEYKVEEKYYKKSKNVSYYMVLVIRKIKKLKFIEQLKSKKKELRKKGWKI
>NZ_CP028103.1|WP_039995634.1|1907864_1908845_+|hypothetical-protein
MTDGLGDIVIRSKLIEKIIEEYGYNNIFFLVREEYGFLGEALEFPIITISRKERYNLIRRIKKMYQINRIGINKFINLEWSNDDLIRNIYSKEKLGIEALEEEDKKNNNCYTTSLKLRTKKIFNEEEKNVIDFLKEIAEFLFDKPIRKEKLIPNLKDKFCTSLYNEGIVIGVGATDKNRICNPYKMSEYIKKIVDICPEEKIYLVGGGKSQEAYSKKIIELCSNENIINLVNKTNLQNVLEIVAKAKIFIGFDSGLYNFRYTLRKKQIALFRSKKVPYAHNEKFVKILEGKKENLSSVKDEKYSNLEINNISVDEFEKFFIELLNL
>NZ_CP028103.1|WP_005947295.1|1908869_1910048_+|O-antigen-ligase-family-protein
MRKFLLNKNNEILSILTMIFLFFIIRKGSERYVVDYILMGITIFFCLYKRKYNKISMGLVISIVGYIFFITLSFLKNDFVNLNIELFFKIIIHNYILFLCLTQLELSEKYYKSFLFFFILCSLIVTVKGLEEWHLNNFSPYYRVKMRTEPTILTIEIGIYVLISFFSLLYSKKTIVKIISGIIFILSFLVLMSTNSRITLLTIPLIIVITLLIKFKVKFKYLIIFFILGICFIKEPHINKYLYRVKQLTSMKNIEKETRIKIWIKGISDFKKNKYKPLGFYYYKNHELGAISWEKNPHLHNNFLEIIVTQGIGAIIFYISFNIFLFLEFIKKLKSTQIKSQKILIYLSISILVFLNLTGLTDCNIYFSKVNQLAFFIFALALCKVRGENINE
>NZ_CP028103.1|WP_005947298.1|1910040_1911084_+|glycosyltransferase
MNEIKVSVIIPVYNVEEYIEECLNSVVNQTLKEIEIIIVNDGTQDNSMKRIERFLSDKRIIIINKENGGVSSARNTGMKIAKGEYISFIDPDDFIKLSMMEELYKDAEDADIVFSDFILYDNLDKNEKIEKIYEKKTRIGSMIWSNQLLKFRGVTSKLYKRTFLQENYILFIEKIIYEDTSFNFTAFIISNNVKYIKKFHYYYRQNRDGSTTTNPDKTKEIEAYKKIVIYLEKFMKKMEDNDFKKARIYLLMSYYKALSYKAQNIEISLLETREFEIKLKNIFEKKYSREEIEIIRVDVNEILKTIMYYKISLLNKIYWKNKILTKKILRRIIEKKIKSSLKLINKL
>NZ_CP028103.1|WP_005947300.1|1911442_1912471_+|glycosyltransferase
MTKMKISVIIPVYNVEEYIEQCVESVVNQTLKEIEIIIVNDGTQDNSMKKIERFLLDDRIIVINKENRGISSARNCGLKIAKGEYIAFVDSDDFIDEMMLEKLYENSENKDIVISNVIEYNNVTGEKKQREIKNEIKKYNKGSYFWKYSGFEIWNKIYKRSFLMENNIKFIEGIVLEDVPFNFYSLFLTNKVKYVDKAYYYYRIKRENSILNTLNNEKILNAYNKINIKLHNFSEIDLNGVFSKLRVYIWKIYYISQEKKSKKEKLELTIITEFEERLKKNYKSLSLIEKEILKEDLRTILHNRMFWEIKIFDSFYWKNKIFTRKILRRIIEGKIKNIFKIK
>NZ_CP028103.1|WP_005947302.1|1912525_1913953_+|dTDP-4-dehydrorhamnose-reductase
MNKLKKIETNLQGIYIIEPLVFGDDRGFFLESYNKSEFEKIGIFEEFVQDNHSKSKKGVLRGLHFQTRHSQAKLIRVIKGKIFDIVVDIRKSSFTYGKWCGTELSAENKKMLYISKGFAHGFLALEDDTEIEYKCDEFYNAQYDSGIMWNDKDININWNFEKYGIKEEDIILSEKDKKHQSFKEYTEKYIGENVLLTGGDGQLGQDFQKLFDKLGIKYTATDYRELDVTDKEKVKEFVDNNDFTTVINCAAYNNVDRAEEEPEKCFALNAYVPKYLSEICKEKNIVFVTYSTDFVFDGQKEIPYTEENIPNPLSIYSKAKLEGEKYSLEYGKSFVIRTSWVFGMGNNNFCKQVINWSKGKDRLSIVDDQVSSPTYSKDLAEYSWELIQTDRYGLYHLSNDGEASKFEQAQYILKKIGWNGILERAKTKDFPLPARRAEYSKLDSSKLEKVINKKIPHWKSGIDKFLEEMREKGEI
>NZ_CP028103.1|WP_005947304.1|1913953_1915114_+|dTDP-glucose-4,6-dehydratase
MKTYLVTGAAGFIGTNFVKYMLEKYREKIRIVVLDKLTYAGNIENIQEEIDSKKIDFVKGDICNRELVEDIFSRYEIDYVVNFAAESHVDRSISNPQIFLETNILGTQNLLEVSKQFWSIGRDENGYPIYKVGKKFLHISTDEVYGSLSKDYTEAKELVLNDRVKKVAEGRKNLKTYGDKFFTEETPLDPRSPYSASKTSSDMIVRAYAETYKFPMNITRCSNNYGPYQFPEKLIPLIIKNILEGKKLPVYGDGSNVRDWLYVKDHNKAVDMVINNGRLGEVYNIGGFNEEKNINIVKLTIDTIAKIMKEEPEYRRVLKTDVTKISYDLISYVQDRLGHDARYAIDPEKIVTELGWYPETSFDKGIEQTIKWYLDNQEWVEKVLSK
>NZ_CP028103.1|WP_005947307.1|1915470_1916604_+|glycosyltransferase-family-9-protein
MLRKLNRMFQDYMRKKRLRLGKYIWDRKKNKEEIKLGNFIENNNIKKILFMRYDGKIGDMVINTLMFREIKKKYPYIEIGVVTKEGAKVVIENNPNVDKIYEYKKDRKSIKELSLKIASEKYDLLIDFSEMLRVNQMMLINLCKARFNIGIDREEWELFDITIKSGIDFNWTDHITERYSAYLKKIGFKENEIDKKYDIYIAETDKYKEFLKGIKEEKIVVLNPYGASKHKSFSLETLDKIIKYLKSVNVGVILIYFGEKYRELEQLKKDNENVYIPQNIETIQDSVYLIKGADLVITPDTSIVHIASALNKANISVYPPKGGKYGVDHLVWAPKTKETKVIFCEDKKSQYDEIDINTFDFQEMKKLIGERYEKNII
>NZ_CP028103.1|WP_005947310.1|1916584_1917739_+|glycosyltransferase
MKRILFKSGSTMMGGVERVQYEYINFLVDKGFDIKVVIENDNGSENILEKEIKTKVEYLKNYEYISRIKKIRENRKRNFFSRIKYAIVLSKEKRYADKKFLEIYKKFQPDIVIDFDSSLTKVIKKLKDSKNLVWIHSSIENWKKKKNKIKRFVKRLEYYNKIICICQEMEEDLLKLNNNLIGKSEYLYNPIDFEKIKMLSDVPFNKDEEVLAKEKFLLMVSRLDIIPKDFETLFSAFDIAKEKGYAGKLYLIGDGPDRAQVEKMKKNSKYKEEIFLLGRKENPYNWMKKADKLISSSRYEGFSIVLLEGIVLKKRVIASNCKSGPKEILADGRGKLFEVGNAFELSENILKNFDLNFEDNFLEKFKKKRIFEKFLRILEGTNAG
>NZ_CP028103.1|WP_039995637.1|1917731_1918493_+|polysaccharide-deacetylase-family-protein
MVNIFDYFLKKEIPILMYHRLIENEKDIGVHTVYCDINKFEEQLVYLKEKGFKTITFKELKNITEEDKKKEKYIILTFDDGYKDNFELLFPLLKKYNMKAVIYMVSHLEDNRWDIEETGEKRFELMNSNQILEMHKSGLVEFGGHTMHHVKLNRLSSEKQKEEIEGNKIYLEKLLNEQLVSFAYPFGFFNDESKKIVKELGYDYGIATDSGPFYINDDLYEIRRIGIFSDITMNKFKRRIKGNYNLKKCNKLK

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Crispr_ID: NZ_CP028103_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_4

2297145-2297232

Orphan

Consensus_repeat	Method
TATGGGAGCTGGAGATGATAAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_4

>merge|NZ_CP028103|4|2297145-2297232|CRISPRCasFinder
TATGGGAGCTGGAGATGATAAACTTATAGTAGGAAGTGGAACAGTACTCAATGGAGATGTAGCTATGGGAGCTGGAGATGATGAACTT

>NZ_CP028103|4|4|2297145-2297232|CRISPRCasFinder
TATGGGAGCTGGAGATGATAAACTT	ATAGTAGGAAGTGGAACAGTACTCAATGGAGATGTAGC
TATGGGAGCTGGAGATGATGAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005947996.1\|2304116_2305418_+\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|223504
NZ_CP028103.1\|WP_005947994.1\|2302379_2303831_+\|4-hydroxyphenylacetate-3-hydroxylase-family-protein	unknown	unknown	gnl\|CDD\|225243
NZ_CP028103.1\|WP_005947989.1\|2298933_2299227_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_005947992.1\|2300035_2300431_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP028103.1\|WP_005947984.1\|2290747_2294560_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_005947993.1\|2300678_2302148_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP028103.1\|WP_070577722.1\|2281932_2282997_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|223614
NZ_CP028103.1\|WP_005947998.1\|2306797_2307034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005947981.1\|2284515_2285019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005947990.1\|2299219_2299489_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_005947982.1\|2285032_2285620_+\|DUF2284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378368
NZ_CP028103.1\|WP_005947995.1\|2303833_2304112_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NZ_CP028103.1\|WP_005947975.1\|2280163_2281081_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_CP028103.1\|WP_005947997.1\|2305430_2306786_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225677
NZ_CP028103.1\|WP_005947980.1\|2283250_2284225_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270263
NZ_CP028103.1\|WP_005947977.1\|2281101_2281905_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_CP028103.1\|WP_005947983.1\|2286524_2290343_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_005947991.1\|2299585_2300017_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|377367
NZ_CP028103.1\|WP_005947986.1\|2294865_2295135_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_005947985.1\|2294579_2294873_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|223847

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005947996.1\|2304116_2305418_+\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|223504	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion].	7.10107e-143
NZ_CP028103.1\|WP_005947994.1\|2302379_2303831_+\|4-hydroxyphenylacetate-3-hydroxylase-family-protein	gnl\|CDD\|225243	COG2368, COG2368, Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP028103.1\|WP_005947989.1\|2298933_2299227_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	8.20097e-14
NZ_CP028103.1\|WP_005947992.1\|2300035_2300431_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.19207e-24
NZ_CP028103.1\|WP_005947984.1\|2290747_2294560_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	7.22642e-14
NZ_CP028103.1\|WP_005947980.1\|2283250_2284225_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270263	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily. Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.26222e-78
NZ_CP028103.1\|WP_005947993.1\|2300678_2302148_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.9415e-140
NZ_CP028103.1\|WP_005947982.1\|2285032_2285620_+\|DUF2284-domain-containing-protein	gnl\|CDD\|378368	pfam10050, DUF2284, Predicted metal-binding protein (DUF2284). Members of this family of metal-binding hypothetical bacterial proteins have no known function.	1.00046e-29
NZ_CP028103.1\|WP_005947995.1\|2303833_2304112_+\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	1.35584e-16
NZ_CP028103.1\|WP_005947975.1\|2280163_2281081_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	7.71086e-166
NZ_CP028103.1\|WP_005947997.1\|2305430_2306786_+\|hypothetical-protein	gnl\|CDD\|225677	COG3135, BenE, Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism].	0.00617266
NZ_CP028103.1\|WP_005947977.1\|2281101_2281905_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	2.97605e-99
NZ_CP028103.1\|WP_005947990.1\|2299219_2299489_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.87443e-13
NZ_CP028103.1\|WP_005947983.1\|2286524_2290343_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	7.54825e-15
NZ_CP028103.1\|WP_005947991.1\|2299585_2300017_-\|DUF523-domain-containing-protein	gnl\|CDD\|377367	pfam04463, DUF523, Protein of unknown function (DUF523). Family of uncharacterized bacterial proteins.	7.72424e-68
NZ_CP028103.1\|WP_005947986.1\|2294865_2295135_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.07338e-13
NZ_CP028103.1\|WP_005947985.1\|2294579_2294873_+\|HU-family-DNA-binding-protein	gnl\|CDD\|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	2.6872e-14
NZ_CP028103.1\|WP_070577722.1\|2281932_2282997_-\|aspartate-carbamoyltransferase	gnl\|CDD\|223614	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].	3.34363e-144

>NZ_CP028103.1|WP_005947986.1|2294865_2295135_+|HU-family-DNA-binding-protein
MNKMELAKLYIKASKSEISIKKAVEEIDIFLKTMQEALVISGKVKFMKKGTFEVLKKEPRIISNPSTRELMKIYPRRTVKFRASKSIME
>NZ_CP028103.1|WP_005947985.1|2294579_2294873_+|HU-family-DNA-binding-protein
MTEKEFIKYYRNRNHLKNVKEAKEKVELFWDTILKALDEDEKVVLKNWGTFEKKEVKARRVMIPKMDKIIIIDAKEKIRFKAGKGLRNVINGADVDE
>NZ_CP028103.1|WP_005947984.1|2290747_2294560_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIEKIMKAVKSSNKRRGRNITIGTVIVFLLSCTAVMGVTEGNYLWIKDNNGIKFSTDNSEPDSQKNPYEDAGNTWSKDVYTNNITLSGNDVYGLKLELNSKSFEFINNGIIISGSKEYDGGQSGYSGYGIHNEKSEKIAKLSNNGIILGNIYNVVSNMGARSYGYGIYNENGTITNLTNSGLIFGNISISSQNFTYNYGCGIQNKGGTITNLTNSGLISGNNNSNMSINYSYGIQNGGGEITKLVNSGLILGINTAEESMQYYSSGIVNSGTITNLTNSGIISGSSSSSSSRNSSNSGIMNSGTITNLDNSGLIFGNANSSKGNRLNNSYGIYNESEGAITKTITNIGIISGGGNTSSGSGIYNENKEITSLNNNGLIFGSGITGSGIVNSNGNNGIGKLINTGIISSNTNSTNSYGIFNINMIKTIINAGLISGNGSSNSDSVYGIYNKEEIKDLTNTGVIYGKTNAIKNETGGAIGTVNNYGILATKGSSEVDGLTISDNYGLIIKNGKEIVVGSKEEKDVNIPVTYNTDGKVSGTRNMTIKNQIDTTGDESFTGNENDSILNALTNTYKVTGLNDEVAGSIINAYGTAVVFGDVGDNNQLTLSGTVVNGGIEDSTNGIAISGSGNGDTLILQSGTVEYTDGSKGIQNTIINGNINMGAGADTLTIGDGTIINGTLDGGDSDSKDTLNFGISSVTKSNPADSQEIRIMHNISNFENINVGEDTNVTLFEKTIGADGKETDLKVSGVNEINIKAGGVLNLRIDSRKLSDNGKYEGHALFGNIDLIINGDISQLPDGKTEIKEEENGKYNVGVFNLVTNGLRKDAIIAMEGITLNENLFVKTNSILDKAVILKESEENGGKGEKGDIKIEWEIDIFEINKNLSRDEPKYIKLNEIYKGIYSSKEENFNGLKDILTLTVAGEDYTSVTDKKQMAILLSYLNKIYTASPYSFSSELSRRSAGMFRDIATENQFRPNLNKWLVMGGLTHRDGGTKDTYYGKNYHGFDTGTTDVDTDMKLKGAYILAKYGYSENTTLGTVIGGNKSEAKLSMSKVKGNSGYIGAFAENYRGNLTLKAGGGIQYSEYDANRATIGGHSYNDKYSDMAYDIYLNGRYSNPMGDNIFLEPYGTLSYTYIKQKGADEGSKVLAIETDSKSFDYIAAKVGVDLKKVIPHEKGKSTLSAGVSYTRLLTGADEKHITGRFKGENASDFDILVAHKNEHSIGLNAKYALELESGILFDVKGSYNVERDSYKGSGKNRNKGEWIVGAGIGYKF
>NZ_CP028103.1|WP_005947983.1|2286524_2290343_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIEKIIKAVKSSNKRRGRNITIGVVIGFLLLCTVVMGAGDYLWIREKDNTIQFNTINTNDENGTNGNWNTANPYSDNNWDTVKKTYTNNMTLLSSEKNGVNTNGDNISYGLRLSGNLTGVNFVNNGSIIGTMSGNISSYGFGIYNTGTMGNIENVGLINGTGKSDDKGYGYGIYNSGTMGNIENKGTISGTGTDAGYGIYNSGTMGNIENKGTISGTGTDAGYGIYNSEKIGDITNTGVISGFGASDYGKGYGIYNDSNEKKMGNITNKGIISVYSSGYSSGGYSSGYSYGIYNKSGTIGDITNTGIMSVSGNGTSSNSSIGNGYGIYNSSGTIEDITNTGIINVFGYSISNNSISNTGWNYGFGIYNKATIEDITNAGIISGTGYNNGLGYGIYNMGTMGNIANKGIISGSGNDLGYGIDNDSEDKGKVNIANVGVIYGKTNAIKKSNGTIAPSSNYGILVNGDGNNNKVIDGLDIVDGTPKENEILNKGLIFTAVDGGGYKAEEKEYGKFGQTFDKDAGTRIINAAASGNGKDNITGTESLKLENGTLTYSDSNGEEQTETISSSKGYILNGITNTLEVSEGNNELNNSVINAYGTAVVFGDTGDKELTLSGTIVNGGIDESDSNPGTKVAAILGSDNGDTLILQFIVSNQGIQNTVVNGNINMGAGADTLTIGDGTIINGILDGGDSDSEDTLNFGVSSGAKSIPGESQGINIMHNITNFENINVGENTNVTLFEKTIGADGKETALEVSGVKEIDIKAGGVLNLRIDSQKLNGGRYEGHALFNKNTSLIINGDISQLPDGKTEIKETEGEKYKVGVFNLITNGLGINAIIAMDGITLKENLFVKTNSILDRATIIKSPSGNEQVGDIKIEDNEDIFVINKEIPRDEQKYIKLNEIYKGVHSSARENFNALKDILTLNAAGGDYTSVTDKEQLATLLSYLNNIYTRTPYSFSSELSRKSAGMFRDIVTENQFRPDMNKWLIMGGLTHRDGGTKDTYYGKNYHGFDTGTADVDVDMKLTGAYALGKYGYSENVSLGVTVGGNKSEAKLPMSKVKGNSGYVGTFAENYRGNLTLKAGAGIQYSEYDANRATLGGHSYSEKYSDMTYDIYLNGRYSHNIGNNLFLEPYGTLSYTYIKQDSADEGSKVLAIETDSKSFDYTAAKVGVDIKKVIPNEKGKSTLSAGVSYTRLLTGADEENITGRFKGGSDFDILVAHKNKHSIGLNAKYALELESGILFDVKGSYSFERDSHNESGKNRNKGEWIVGAGLGYKF
>NZ_CP028103.1|WP_005947982.1|2285032_2285620_+|DUF2284-domain-containing-protein
MYRTEVKLKKIPMEELKENYCDRDKFEKFCKECRNYGSTWSCPPYAFSVEEYLEEYKYMYLAGIKIIFDEETLKEINTKDKINNYTTETLKYMKDKIMKELLRIEKIYTGSKSFSAGGCKLCDDCSRKNNIQCQHPDMMRYSLESMGFDVGGISSKLLNYELKWATETSLPEYFSLVTGLMTTTEIEGFEKELII
>NZ_CP028103.1|WP_005947981.1|2284515_2285019_+|hypothetical-protein
MKKLLLMIFFAISVSAFAVDGYLRVGAITETNSYNHESGSFENYAPTFSFEATQDFLLADLGAGIAYNGKTGGTDIGTVPVYLVARWNLLPVFFEPYIVLKAGRVLMTNESVRNSSPDGKGYIAGGFGIDFMPFQAELLYSETKIDGDRRGSDRLKQLSLIFGYRIF
>NZ_CP028103.1|WP_005947980.1|2283250_2284225_-|thiamine-ABC-transporter-substrate-binding-protein
MKKLILSLLLILSVSSFSEEIIVYGPSSAKWIGKSFAPIFKEKTGVDIKFISIDGLVSRLKLEEKNPKADIVIGLTSLSTEIAKKENLITPYIPKNISNIKSSDFLMDKEGYATPFDYGLLAINYDTKKIPVPPKNLAELGKLEKQLLVENPATSSTGEEALLWSIALYGENWKNFWNVLKPAIYTAEPGWSEAFAKFTAGEAPMMVGYATSNLFFSQDEEQSRFSSFLLEDGTFMYLEGASLVNKKETKEGAKKFMEYVLSEDFQNLVPQKNYMFPVTEISLTEEFKFVPVAEKTVKLSDEQVKDLVKNLDIYKSELIEILKK
>NZ_CP028103.1|WP_070577722.1|2281932_2282997_-|aspartate-carbamoyltransferase
MKDFISIKDLTKEEVLEVLNLALELSENPEPELISGKIVGSLFFEPSTRTRLSFTSAAYRIGGKVLGFDSPDATSVKKGESLRDTVKMVEAYSDIIVMRHNIEGGPKFASEISKNPVINAGDGSNEHPSQTLLDLFTIKKELGKIEGVKIAFVGDLKYGRTVHSLTKALEMFDAEFYFVAPDSIQIPEYITKELDEKGMKYHICSEYEPILSEIDVLYMTRIQKERFEDIEEFNKVSGVYKISKDTIVGKCQDHMIVMHPLPRVDEINIDLDDTKHALYFKQAANGVPVREAMFALALGAKKSTAPVKEEKNVEENNKVVCSNHKCVTHFEETTNKVIVKDYGKFCYYCGKEIK
>NZ_CP028103.1|WP_005947977.1|2281101_2281905_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MFLEDCLILENRNIAGQNYLMRLKAEKSIPVSKAGQFFMIQCKNKLHILRRPISLHYVDKNKMELEFYYEVKGGGTKEFAEMKAGETINIQGPLGHGFSTDMTGKKLLVVGGGMGMAPMKLLVEVLKKNNEVVFIAGGRNAEAVEILSNFNFDGAELHITTDDGSAGTKGTVIVKMEELMNSKKFDMVFTCGPHKMMEAVAKTSSKYNTECEISLEERMACGVKACVGCSIKTREGMKKVCHDGPVFKSETIVDLEPAERTETCCGN
>NZ_CP028103.1|WP_005947975.1|2280163_2281081_-|dihydroorotate-dehydrogenase
MNRLQTKFLGVDFKNPIVTSSGCFGFGLEYRDYFDPNVLGGIVVKGLTMEPRDGNYGTRVAETPGGMLNCVGLENPGIDYFETHILKDMKEAGITTNIIANINGKTVEEYIEIAKRVEKIKEVDIIELNISCPNVKDGGMAFGANPEVAGRVTREVRKVTTKPLVVKLSPNVTDIAYIAKVVEENGADAVSLINTLLGMAIDLKTKKPLLGNTFGGFSGPAVKPVALRMVYQVYKAVNIPIVGMGGISSTEDALEFIMAGASMVSLGTGIFFNPVLPVEVAEGLQKYCEENNIENINELVGIAHR
>NZ_CP028103.1|WP_005947989.1|2298933_2299227_+|HU-family-DNA-binding-protein
MTEKEFIKFYKRRNLSRSYKEAKGKVDLFWDTLLKALNEDGKVSLKNWGVFEKKEVKSRKVVLPKTNEAVIIGAKKKIKFRTGAGLQDAINSGDVDE
>NZ_CP028103.1|WP_005947990.1|2299219_2299489_+|HU-family-DNA-binding-protein
MNKRELAKIYSTISQEEVLRREALKEIEIFIQTLQEALQKYNSVTFVNRGVFEVAKRKPKVVSNPSTRELMKIYPRKTVKFRASKNIMK
>NZ_CP028103.1|WP_005947991.1|2299585_2300017_-|DUF523-domain-containing-protein
MRILVSACLLGVECRYNGKGELKKDIETLLKEHELIPVCPEQLGGLATPRDPAEICGDKIITKTGIDVTKEYLKGAEEVLKLAKLYKCSAAILKERSPSCGYGKIYDGTFSKVLINGNGATADLLIKNGIKVTGESEINKIFL
>NZ_CP028103.1|WP_005947992.1|2300035_2300431_-|acyl-CoA-thioesterase
MFSYKYKIVQEDINYGGHVGNERALLFFQFSRMAFFESLGFTELDLGDGVGVIQKNGYVEYNKELFLNDEIEIKIVKAEIERTNFTLHYEIYNTAGEKVINGYTMLVCFDYTAKKIKRVPQSFKSKIEALA
>NZ_CP028103.1|WP_005947993.1|2300678_2302148_+|sigma-54-interacting-transcriptional-regulator
MGKKGYGFLFKGKKETKSLKDEIIENTYVNKMMKSIVDSSYDGIYVTDGEANTLLVNKSYGRITGLNIEELIGKNMKDLVEAGVYDNSGSLAVIETGKEATVNQKLSSGKEILVTSVPVFDENGAIKYIVTNVRDLSEMERLRRELFLNQNLTQKYKDELENMKEQLVDIDDITFRDKSMFNTLKMILKISKMDTSVLLTGETGTGKTHIAKLIHKYSNRNEKTFIEINCGAIPESLIESEFFGYEAGAFTGASKKGKMGVFELANNSTLFLDEISELNIDLQVKLLKVLESLEVRRIGGEKIIQTNARIIAATNRNLRELIKEGKFREDLYYRLNVLSINIPSLKERKDDIIPLCLRFLKEFNEKYNVEKFFNKEIIEVFYRYQWPGNIREMRNLIEQLVIISQGNEISTDYLPKYIFQNGTLESLYEKTEKADEFFQYYKMSLKEATLKFQQNLIKNMLKEKGSQRQVAKALQVDPATITRKLTGRE
>NZ_CP028103.1|WP_005947994.1|2302379_2303831_+|4-hydroxyphenylacetate-3-hydroxylase-family-protein
MALKTPQEYLDSLRKLNLEVYLLGERVKDPVDNPIIRPSLNSVIMTYELAQDPKYADLMVVNSHLTGEKINRFTHIHQSTEDLVKKVKMQRLLGQKTGSCFQRCVGMDAFNAVYSTTYETDQKYGTEYHARFKKFLEYVQKEDLTVDGAMTDPKGDRGLSPSKQEDPDLFLHIVEKRKDGIVVRGAKVHQTGIVNSHEVLVMPTISMTEEDKEYAVAFSVPTDTKGIKIIYGRQSCDTRKLEEGTLDRGNPKFGGHEALVIFDNVFVPTERIFMCEEYDFSGMLVERFAGFHRQSYGGCKVGVGDVLIGAAALIADYNGTKKASHVKDKIIEMIHLNETLYCAGIACSSEGHPTVAGSYEIDMLLANICKQNVTRFPYEIARLAEDIAGGLFVTMPSEKDYRDPVLGAYIDKYLKGVAAVPTIDRMKVLRLIENLTLGTAAVGYRTESMHGAGSPQAQRIMISRQSNLEVKKQFVKDILDIKD
>NZ_CP028103.1|WP_005947995.1|2303833_2304112_+|NifU-family-protein
MEKIEKFLDEEIRPELQKHNGDISIEEYDEKSKKLVLRLMGQCCTCPHSIDTTENFIKVSIKEKFPEIETLHVNAGASKEFIEIAKAYLRGR
>NZ_CP028103.1|WP_005947996.1|2304116_2305418_+|acetyl-CoA-hydrolase/transferase-family-protein
MDWKEEYKKRVYSPEEAVKKIKSNNRVVICHAAGEPQTLVDAMVKNYKEYENVEIVHMVPLGKCEYMKPEMAGHFRHNGLFLGGGTREAVSAGAGEYTPSFFFEIPKLFRKGGNLPVDVALIQVSLPDEHGYCSLGITCDYTKAAAENAKCVIAQVNKFMPRVLGDNFIHISEIDAIVEKDEPIIVLNPPKIGDVERKIGEYCASLINDGDTLQLGIGGIPDAVLTFLKDKKDLGIHSEMISDGVVDLVKAGVINNSKKTLHRGKSIVSFLMGTRKLYDYVDDNPSVEIYPVDYVNDPRVISKNDNIVSINSAIQVDLMGQVNAETIGTKQFSGTGGQVDFVRGTAFALNGKSIIAIPSTASKGKVSRITAYLDEGAAVTTSRNDVQYIITEYGIADLRGKTLRERAKELIKIAHPDFREELTQKALEKYKTL
>NZ_CP028103.1|WP_005947997.1|2305430_2306786_+|hypothetical-protein
MAIREYGQEQPYTPLGIFKLRLPFIHYKWEWSEAIQAIFMCATCLGAIPILTEYLGVSFELAWSMVIINGILYNLHALLGDPVVPGWITPSIPLTIVYLSKFTIGVDRIHALIALQLLVACIFIIMGITGLAGKLMGIIPVSIKSGILLGAGFAAVVGEFSAKGRFNLYPISIAFGGLFSFYLLFSLKFRDLRKKSKIADAFGKYGMLPAIFLSIIISPLVKELPFPKIEIGSVIKIPEMGNILREVSIFGVGVPKAAFFISAIPMAAMIYIIAFGDFVTSSALINEADEVRQDEKIDFNSNRSNLISGLRNIIQSILIPYIPMCGPLWAAVTASVSQRYKEGRTAMDSIYGGVGTFRIMTCISVALVPIVSLVQPILPVALSLTMLVQGYICTRLAMSMCKSELDMGIAGVMAAVLATKGAAWGLGIGIILYVLLENIKGKQNETAEVQE
>NZ_CP028103.1|WP_005947998.1|2306797_2307034_+|hypothetical-protein
MEIRFCGGCNPLYHREKLYEMLKLLPENKDVVIVLNGCQRGCVKVLENKNVINVQEYLVHTGNFDEKEILKWIMGKIK

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Crispr_ID: NZ_CP028103_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_5

2567440-2567576

Orphan

Consensus_repeat	Method
GGTTATGGAATAAATAATAACTCAGGTACAATGGGAGCTATAACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_5

>merge|NZ_CP028103|5|2567440-2567576|CRISPRCasFinder
GGTTATGGAATAAATAATAACTCAGGTACAATGGGAGCTATAACAAACATAGGAATAATAAGTGGTTATGGTGATAATTCTGGTGGTTCTGGTTATGGAATAAATAATAACTCAGGTAAAATGGGAGCTATAACAAA

>NZ_CP028103|5|5|2567440-2567576|CRISPRCasFinder
GGTTATGGAATAAATAATAACTCAGGTACAATGGGAGCTATAACAAA	CATAGGAATAATAAGTGGTTATGGTGATAATTCTGGTGGTTCT
GGTTATGGAATAAATAATAACTCAGGTAAAATGGGAGCTATAACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005949683.1\|2587440_2587803_+\|adhesin	unknown	unknown	gnl\|CDD\|370466
NZ_CP028103.1\|WP_005948254.1\|2556948_2557722_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_CP028103.1\|WP_005948263.1\|2570454_2570724_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_107123255.1\|2576427_2586552_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP028103.1\|WP_107123300.1\|2558728_2559526_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP028103.1\|WP_005948255.1\|2557922_2558285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_107123257.1\|2586985_2587417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_107123254.1\|2575849_2576410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948264.1\|2571253_2574685_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_005948262.1\|2570168_2570462_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_005948253.1\|2555566_2556934_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP028103.1\|WP_107123246.1\|2560780_2561095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948258.1\|2560429_2560669_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP028103.1\|WP_039995603.1\|2574986_2575256_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_107123253.1\|2561335_2561572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_070578932.1\|2561163_2561346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_167467247.1\|2562465_2566125_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_005948257.1\|2559512_2560319_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP028103.1\|WP_005948265.1\|2574700_2574994_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_107123256.1\|2586746_2586968_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005949683.1\|2587440_2587803_+\|adhesin	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	3.9442e-10
NZ_CP028103.1\|WP_005948254.1\|2556948_2557722_+\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	1.70246e-46
NZ_CP028103.1\|WP_005948263.1\|2570454_2570724_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.49289e-15
NZ_CP028103.1\|WP_107123255.1\|2576427_2586552_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.13626e-37
NZ_CP028103.1\|WP_005948262.1\|2570168_2570462_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	3.21228e-08
NZ_CP028103.1\|WP_005948264.1\|2571253_2574685_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.32242e-19
NZ_CP028103.1\|WP_107123300.1\|2558728_2559526_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.1005e-08
NZ_CP028103.1\|WP_005948253.1\|2555566_2556934_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.42515e-159
NZ_CP028103.1\|WP_005948258.1\|2560429_2560669_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	8.82634e-06
NZ_CP028103.1\|WP_039995603.1\|2574986_2575256_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	3.1575e-16
NZ_CP028103.1\|WP_167467247.1\|2562465_2566125_+\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.49595e-15
NZ_CP028103.1\|WP_005948257.1\|2559512_2560319_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.96429e-49
NZ_CP028103.1\|WP_005948265.1\|2574700_2574994_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	6.86574e-12

>NZ_CP028103.1|WP_167467247.1|2562465_2566125_+|autotransporter-domain-containing-protein
MKNITNTGEISGTAKGLDGGTYGGAGYGIYNYQGTIVDIENTGRISGTGSGFSSSDGEGEGYGIYNSSSTMGAITNTGEISGTGKGDGTGAGTGYGINNSSSGKIGDITNTGEISGSGKSTSGKSEGSGIYNSAEMKNIKNTGRISGTGADSSSDSKGYGIYNDSGAIGAITNEGVISGTSTNGTGIHNASGISKEMGKIINTGIISGSGNSTSHASTGYGINNSSGKIGDIKNTGAINGSGKTSGASTGYGIHNDKTYGKEIGNITNEGVISGSGTSTGGNGEGYGIYNGATMGDIENTGLISGTGYNNTSTGTSDTGSGIHNKSDSKEMGKITNIGIINGYGAGESSSTGTGYGINNESGTIGDTTNTGVISGYGSGHDTGYGYGISNITTPGNTTTMGAIINTGIISGTGTGGSGSGIYNGSSGTMGAITNTGVIYGKDNAINNTNGNITVNNYGILVNEENKDVNAGISDTNYGLIIKNEGDNITVGTAGTQDIPIPFYDAEGNIMGERKVTIGNVAGKNDDKSNSFSGNKENHILNALTNTYKVTGENNNVTGSIINAYGTAVVFGDTGDNNQLTLSGTIVNGGIDEDDSNPDPTVKVAAISGSGNGDTLILQSGKIEYTDNKVEKSATQNTIVNGNIDMGAGDDTLTIGDGTIINGTLDGGVGTDTLNFGISSGAKSIPAKSQGVNIIHNISNFQKMNINTNVTLFEKTLETYGKETDLKVTGADEIKIGKNGTLTLRINSSKTVNEGGDDKITGHALYGNTGVISSTDGGKLLLALNGAGNENIISFGSTTLGDGLVPEKGTLDTTSALHTLEIINNKDVKVIVRQNIPGFFEIPEYEKLNKIYHGILSVEDLIANFNVDDESLSIFLGYLNDIYAGNPYSYSSELSRKSVGMFRDIATENQFKPELNKWLIMGGLTHVDGGTKDTYYGKGYYTYDIGSSDMDADTKITGAYMLGEYGVSDTLAYGVVIGGNKLKSELSNGSKVDGDALYMGAYAKKYVGNLKVTGGLGLQYGDYDADRIAVNKVASSLAEPVMKYCDNYNDMTYDIYLNGRYSHNIGNNLFLEPYGTLSYTYVDQEGADEGNKVLAIETDSKSFDYTVAKVGVDLKKVIPHEKGKSTLSAGVSYTRFLTGADEENITGRFKGENATDFDILVAHKNEQSIGLNAKYTLELESGILFDVKGSYNVERDSHNGTGKNRAKGEWIVGAGIGYKF
>NZ_CP028103.1|WP_107123253.1|2561335_2561572_+|hypothetical-protein
MINNAELFFKIITTTGTFFLAYHRYTLSLFEKKIDKGECEKERIFAEKFRIENIKTLTEGISRIEERMTRIEEYLMKH
>NZ_CP028103.1|WP_070578932.1|2561163_2561346_+|hypothetical-protein
MKTIIIKFLKYFISRWFGTKAMEKVVITALGELVKRTESKIDDKIYEAVFGKLEEEKNDK
>NZ_CP028103.1|WP_107123246.1|2560780_2561095_+|hypothetical-protein
MAGENQVILAVVQKEMEKVENAIKREKAILKNIDDITATLEHIAELVESGKEFPENSAYESYKDWQESAEKEIKSYTTSLETIDKYRSLLAAYQFYVKNNTPEA
>NZ_CP028103.1|WP_005948258.1|2560429_2560669_+|helix-turn-helix-domain-containing-protein
MNREEYIYMKLESLSPLDKALSKEMVKYLGEWATIEEVAKYLKKHKNTIYDKVDGGDLLYRRIGPSILIYTRSIIFLLE
>NZ_CP028103.1|WP_005948257.1|2559512_2560319_+|ATP-binding-protein
MEKCKYCGKEYRENPMSHIEKLPEFIKEKIKYIPDCNCLEEISKKEMEELEKKRVYEGMKNKIKKYKDISVIDNKFLESRFGNADMSEKYMILVKKYADNFLVKEKKTGILLYGDVGTGKTFASACIANYLMEYGKTVIVINLALYLNRLSIEWGEKEKTILEQTEKCDLMIIDDFGTEKSLNENQSGWRAEKIYNLIDARYRSNKPLIITTNLNFNSDESKCELTEKFSIQGKNRIRDRIIDMCFPVRVTGKSRRGITREKFLEFMG
>NZ_CP028103.1|WP_107123300.1|2558728_2559526_+|helix-turn-helix-domain-containing-protein
MKDKNLNIISKAIYAYICSYAGKGKDAFPSQKLISNDLGINIGTLAKYTQELKDSGYITVKGHKEKGKFSKNLYTINIELNMVSPCTVKTDTETTEYGQIDTNNNNINNNIKTNNNSVNNNTLTKGKSKKNIEKTTEDKKEKLENAPVEIQQILKKYKELELPDFDYRPENYILLRAYGELGAVKLFEALTLMSQSEFVKNNMSINAIFKIENLKKALNGNFKNKVNNKKGTKTEFKKPVYEDFTGELIDEILSEKIGDIEDGKM
>NZ_CP028103.1|WP_005948255.1|2557922_2558285_+|hypothetical-protein
MEDYIILEFIDYTTDHWEYFIKFEEGEKYNWNITCKFPNNRKHLIKVDLRDEKNLEKCMEEIFSDNSRYYEIDWLNGVEIVKKLLKKRSERAITFEELKKEMKILEEIINKHNENEVEDL
>NZ_CP028103.1|WP_005948254.1|2556948_2557722_+|cyclase-family-protein
MRKIIDLSVAVESGLPCDPPNQIPHIKYCNHKDTAAEMAGFFGNATVDDLPEGNGWAIEFINISTHSGTHIDAPYHYYPTMNNGEKAWTIDEVPLDWFIGDGVVVDFSTKGDGYKVTASDMEEYFKKINYKLKAGDIVLVRSGAADRWGTKEYLTAGCGMSREATLWLIEKGVQVVGTDGWSWDRPLPLIAKEFNETGNKDIIWEGHRAGIEKAYCHLEKLTNLDKLPATGFKFYCFPIKIKAASAGWVRAIAIIEE
>NZ_CP028103.1|WP_005948253.1|2555566_2556934_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MEKNIFKTAIDQLNGVAITDEKGRYVYVNKSWSAYMGYELEQIKGMYVRDIFPTTLVDEVLKIGKTLVGQPFIFENSIIKQGFCTYIPLFENNKIIGVLVHVLFNQMEQAINFTDTLNDMISNIEYYKQELREIRGAKYSIDNIVGESEAVKKMKAKIIKTAGSNSSVLIEGETGCGKELVAHSIHDLSKRTSNPFIKINCAAIPEELIESELFGYEYGAFTGAKKGGKTGKFQMADKGSIFLDEINQLSSVLQPKILRVLQEREIERVGSEKSISIDVRIIAATNTSLEKMIKEGKFRSDLFYRLNVIKIKIPPLRERKEDIPLIVKDIINRLNFQLGMHIARVTDEVNEKLMEYDWPGNIRELQNVVERAMNMSDSMILQWKDFQEYFDSKHLKKLKRTKCSDNYDIKTIKKDFEKEVIAEALEKTENNRTKAAELLGVSRTMLYKKLKEYDL
>NZ_CP028103.1|WP_005948262.1|2570168_2570462_+|HU-family-DNA-binding-protein
MTEKEFIKFYKKRNLSRSYKEVKEKIDLFWDTILKALDEDGKVSLKDWGVFEKKEVAPRKIMTPRMEKERVTKAGEKISFRTGTGLKTLVNRDDTDE
>NZ_CP028103.1|WP_005948263.1|2570454_2570724_+|HU-family-DNA-binding-protein
MNKRELAKIYSTITQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNRGILEVLERKPRLVSNPSTRELMKIYPKKVVRFRASKNIMK
>NZ_CP028103.1|WP_005948264.1|2571253_2574685_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIEKIMKVVKSSNKRRGRNITIGTVIGFLLSCTVVMGAVDGNYLFIKDDSGIKFSTDGNAWGNTNPYEDVGNTWNQNTYINNTILSVNGTGVNAYGVKLELNSPNFKFINNGSIIVVIEDKGNNGIDNRGTIGDIINTGIIRVSSNSAPGSESINGIKNYKNTIGDITNTGVIIVSSFSGSHSHGIYQYAGTSRDITNTGIINEVGASESNSYGIYNQREDAGQESIMGNITNIGIISVYTKDTSVAGHASGWGIANTGKMENIINMGIINGSGRHYGRGIYNIGTIGDITNTGIINGSNYGGGIDNSNNTMGRITNTGIINGSNNYHDSRNFGRYGIYNNSLEGNLIKAITNTGIINGSVNAIKNYKDKNGKIGTIATANNYGILANSSNNEVVDGLDIVDSSTTDTNKIVNYGLIIKNKGINEADITAGAGGNHDILFYDTEKNIIGKRNVTIENVTGKNENKDNSFSGNKENHILNAFKNTYKVTGSNNEITGSIINAYGTAVVFEEANKQLTLSGTIVNGGLDNSVTILGSNEGDTLILQSEKIKYIDNEVEKSVTQNTIVNGSIDMGGGDDILIIGDGTIINGTLDGGAGDNTLNLGISSVTKSNSADSQGINIMHNISNFKDININTNVTLFERTVNTSGKGGELTVTGTEKITIEENGALTLRIDGTNNNSHALSSNIGGTIESNGGKLLLALNGVSDGSEINIGMKLGDGLYGVENTDIEYRDLFTLETTSLLHSVSKNGSDSTKVTVTSKSTLPLSSAAPEDINYEKLNKIYQSMRVVDGVKEFNVDSDEKLSAFSGYLNDIYAGNPYSYSGELSRKSVGMFRDIAVESQFKPELNKWLIMGGLTHVDGGTKDTYYGKGYYTYDIGSSDMDVDTKITGAYMLGEYGVSDTLTYGVVIGGNKLKSDLSNGSKVDGDALYMGAYAKKYIGNLKVTGGLGLQYGDYDADRIAAGRGITETRSYSDNYNDMTYDIYLNGRYSHNIGENLFLEPYGTLSYTYIKQDSTDEGSKVLAIETDSKSFDYTAAKVGVDIKKVIPHEKGKSTLSAGVSYIRLLTGADKENITGRFKGGSDFDILVAHKNEQSIGVNAKYALELENGILFDVKGSYSVERDSHNGNRKNRTKGEWIVGAGIGYKF
>NZ_CP028103.1|WP_005948265.1|2574700_2574994_+|HU-family-DNA-binding-protein
MTEKEFIKFYKRRNFSRNHKEAKEKIDLFWNAILKALEEDGKVVLKNWGRFEKKEVKARKIVIPKMNEAVITEAKKKIRFRTGTGLQDAVNGFDADE
>NZ_CP028103.1|WP_039995603.1|2574986_2575256_+|HU-family-DNA-binding-protein
MNKKELAKLYSAISQGKISQKAALEEIDIFLETMQEALVISGKVKFIKKGTFEVLKKEPRIVSNPSTRELMKIYPRKVVRFRASKSIIK
>NZ_CP028103.1|WP_107123254.1|2575849_2576410_+|hypothetical-protein
MKKVLGIFLFLSCLTTALYSQEISEKEGKKVLEQIRKEIQAEEKAKQKAIEDEEKARIAAQKAEEKKGKKIIEEIRRDMNESLEEKVFRSENTPEARIAAAGAAFEIGKERMVFLKMEEEEIMKLEEVLGMEPDEKRVFLSQKYDEVYDEFKSNNNEIELLLLENEKLNEYLSRLDKMEQKVRAGN
>NZ_CP028103.1|WP_107123255.1|2576427_2586552_+|autotransporter-associated-N-terminal-domain-containing-protein
MRKGDIEKSLKRFLKRKVSYSLSLLIAFMITGGISLGAGITAEEIQETKGDLLTKIQAEREEIKRKIAENERMIKEYNSDFVELVRKGDFYSKPLFNSTQVFLSYQYLDNGKMKDRTDKEFSETIDAINKHYGTKSGRSLLRATGNIGKDKIMAGNGVAVDTEVFRETIEVGANIKPIHPSLPLVNPSVSVNVSAPTVNLGALPGTVSPTIVGVPTISAPSISAPSAPSGVSVSVSTPSAVAAISVTAPTITTPTAPSDKTITVLAPIAPDGYTPSVIPVPGKPIAPPTPTILLFTPYDIVFNGTGFGQPSGKSTPKSNIIMQNYEKFISSGITITTGSTGTSWTGNITTESGGSSNLTTGSTGSILNAFISHVDNLNAEVTGNYDFTGTTGGNNSKLFISLNPYYVQGTDKTFDFQGTLVMHGNGPGTSEALVGMEHQILTYVQGGTSTGTSIMKNSGTIELNSGKNMIGIQIDTEYDNASPEFLKQPQTINAGLIKISSGASQSIGIDFGLYYFQNASVSGPNNKTWLGNIEVNGTNNYGFRMKDYYGVPNPSTGVSTTIYYDKIQVTGERGTAGNYGTITLGGNKNIGISVAQGHSTGDPIQNLSNLSVVVGGTENVGFYRNPNYSGTNHNAMIMNSTRIHDFKFAAGATNSTLFRSDLDEIILTKNLTLTAGSAGNSIMQAGGVGKVTNQAVVTSSLPTFYGLTAGDFNSSTGATASNTGTITLTGNNSIGMAIATGNTGNNSGTINFTGTGGSGIYNRGIFNLTNGSKINIEGTTSSGIYNLKPVVGANTVSISGTVGIDVKKGATAIYSNGGTITSTSGNALTISVDDTSNPATRGLAVYAEGGAAVNLGAAKIDVKNGAAGVAAFGAGTSINLTGAELKYSGEGYAAYSDGNGTINLTNANLELSGKATGVELDLLSPKVTMNNTTITMMSNDATVANLKNATGLLTSNLKSTVETNLGSGVSIANGFDGINTFDKYKIATVDGGDLTIDDDMSKYNQNETTTGYFYSRRFLGQRLKLTVDMGVKVLSLTDTTYATAYFNNQIVGLEMSSSKAATSATDAQINLLANSEVSVDRVDAGNGAIGLYMNFGKVDIAGGAKVEVGKIYGGSNKAVGVYAVNGSTVLNNGSIEVGGDQSIGILGMAYREQPIGTPLVNEFGTGGIFTAQGKADITNSSKITLDGKGSIGIYAYNNNTLGTEADVTVTNTATGEIKVGSSDASNAAIGIYGDKATISNQGKVSVGDGGVAIYAKNKTKVASLGILDLGADGVGVMLDGTSDLSATTVTVTSNNTGTLGKTAIYYKGTGGETKNIGVAVNALALDKGTAIYAEDMSVSSSGALSIGTSGVGIYIKGSSTNTGTNTGTITLGTGKTGAVGMYTKTANILNDTTTGIINVNDASQIGMYAEGSGVKAINQGTINLKVDGTTGIYVKAGAVTELNTGNKIVFDGKSSVGVFAENSSVNFKDNQTLTSTNENKNIFVYGKDATVGIDSGKTVTIDGVGTPTTPGNKTVGIYLENVSTGSTFNGTGKLNVTNEAVGIYSKGNNTLNVDVTAAGDKTTGIFIDGTSIISGTVAATGTATAGAVGVYGSGGAVTIDTGGLVLNTNSGRGTGMYLTDGASATGGTITVNNTVAGTKNIGVYYSKGTASGTVTNGSVISIANNESIGIYAADGITLVNNSNITSVAGKSENIGSYVGGGSQLTSTGTITMNDDDSIGIYVEEGRGINSGAIAMNGTASSLSKSVVGMAAETQTGKTAVAENAAGGTITAGANLGMYVGGTGTSSGKNAGTITTTTGTGVYVDGSTNSFDGTGGTINSNAVGMYLKNTGVNKITAGTFNIASGGVGVFGENANIDFVVNVSGVEAVGVAAKTNSVISGNITTTGQDSVGVYVLDNSVTFNGANITTGTKSGLPLKSSIGILLKSALGTYTMSNVTVNAQDGVGIYLDGTTPGTNLTHSGTINTVGGIGIYVDNGTTLTTNTTVLNINGGTGVYVDGGTANLGTIGSLTFNFLAGGGIGVFNNGGTMNLGANINVTGSGSLAATTNGSLSSSGTLNIGEGATGLMGLYDSGLAAAHSVNNSGTITAVSGGIGLAAVKGGTNPGFPVTINNTGTINASGKSSTNTPSIGIYTDVADVANTGNINVGSNGIGIYSAHNGVLTSVQNNNMNMTGTDGIGVYIKGATNGLTANNINSTSSRNTGVVLEGTAGNINVGTVNLGNESVGVFATGTAVSTIDGTISTGEGSASKSAIGIVAQNGADMTMAGTATITTGNKGIGVYAEGASTTATVSNAGNISVGATGIYMYSKGATLNFSGNITANNQTGIVAEGGTINVMGASTITVQNGGVGAYVKGAAPAFGTTTIDVQTGTSSIYSMGVYYDGVSSIGTAPVITQSGSYTLGMALNSSTGTTAGGISIGGAGTSNQVGVMAKGNSNLTVAGTVNISGGDNNIGIYGENSIITVNGNVAVGNSSLCINKASSSIGVVLSGGSYTGSGNLSAGNYSIGVFGKKMAPGSVITQGTGTETMAVGTEGVGIYGEGTGGTITANMSNITVGTGNAIGVYAKGMDSVVTGNMGIGANTSVGIASEGTGNITYTGAITIDDKGTGKDDTASVGIYKKLGSGTITTSGGNWSVGNSGYGIYVQQAIVTVDAAGKEISTTMTSNSATINNSADMNLGMSSVGIFSNGANTVNNSGNITVGETYVEGGPSNHSDPTKHLNSVGIYGAGGTKIFNAAGATIKVHEDHSVGVYVDGSNIITGDKTRFENYGIIDVDNGGVGVIVRNGAIAVNEGVITLGGNASPICGAVNVGMSASGPGSTIENNGIITINSGAGMVVGNQANLINTGTLNVNNGVGITGTGHITNTGTMNVAPGATGEDSSGLATAEVGVVTIKPDGTILINDQYTAIGGTLSTAGDIIVDGAYVDATTGTPLFNAHSVSGEVRLLPNFASTGNGISYEMEGFVNTALGTITGTKLTPVTSPLFIAKITDKGSLVIAKRPYADLTIGEQFDAMDKGLDNILKNSGGSGRDADILKGLNEYLEGLPADQFERETSLKLAEFRGDIYATIQGRMQDINQAFNNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGLLYMKEKEGTEYGSKYGYTIGFAGSKFDFDDGGSKEDVYSLRVGAHRVKNLSDEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVAFDNKLTKVIYTDLSRQLDVYADLDLEYGKVDDFKEHAGSKGGLEVQIKDNDYLSAQAAAGVKASQRIYAGNDISVKVTADVKYAYEFGDNYDGNKARLKNGEEGYYSLITPEEREGKLSGKVGLTVEKANHMGVTFEVEAADESHKKDSSIKYGVRFNYKF
>NZ_CP028103.1|WP_107123256.1|2586746_2586968_+|hypothetical-protein
MVEKRKRGRPLGSGVKNYCALGCRFTEKEYLLIQESFKSLKEEYGTNNKIILNLFKKYGKYLDGKDNKKKIKV
>NZ_CP028103.1|WP_107123257.1|2586985_2587417_+|hypothetical-protein
MIKLTKKELETLGENKDAIAQLLVRKAILEEMGKKEYTEEEKKYLEEMKLNMEIEFYLNSIAQKTVQIHDYELLEVYKNNAELLKDKNTVEVYPQVQQALFNQKLGEEKVKVINEIVEKYKINDVLKEYIKVEESAKKEEENK
>NZ_CP028103.1|WP_005949683.1|2587440_2587803_+|adhesin
MKKIIIGCLLAVSAVSYSATDVMSTLEQLELNLQQLEAEERAMYNQRKAEAEEAEKTLEAQRKMYAEISEKEKRILSVKDNKFYKGQYQELAKKYGEAKKELEADMRKQEEIISIFEAIK

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Crispr_ID: NZ_CP028103_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_6

2571656-2572336

Orphan

Consensus_repeat	Method
ATAACAAATACAGGAATAATAAATGGTTCTAAT	CRISPRCasFinder

7 spacers

The CRISPR arrays of NZ_CP028103_6

>merge|NZ_CP028103|6|2571656-2572336|CRISPRCasFinder
ATAATAAATACAGGAATAATAAGGGTTTCTTCAAATTCTGCTCCAGGTTCTGAAAGTATTAATGGAATAAAGAATTATAAAAATACAATAGGAGATATAACAAATACAGGAGTAATAATAGTAAGTAGTTTTAGTGGTAGTCATAGTCATGGGATATATCAATATGCAGGGACATCAAGAGATATAACAAACACAGGAATAATAAATGAGGTTGGTGCTTCTGAGTCAAATAGTTATGGAATATATAATCAAAGAGAAGATGCAGGACAGGAAAGTATAATGGGAAATATAACAAATATAGGAATAATAAGTGTTTATACAAAGGACACATCTGTTGCTGGGCATGCTTCTGGTTGGGGAATAGCTAATACTGGTAAAATGGAAAATATAATAAATATGGGGATAATAAATGGTTCTGGGAGGCATTATGGTCGTGGAATATATAATATAGGTACAATAGGAGATATAACAAATACAGGAATAATAAATGGTTCTAATTATGGTGGTGGAATAGATAATTCGAATAACACAATGGGAAGGATAACAAATACAGGAATAATAAATGGTTCTAATAATTATCATGATAGTCGTAATTTTGGTCGTTATGGAATATATAATAATTCTCTTGAAGGAAATTTGATTAAGGCTATAACAAATACAGGAATTATTAATGGCTCAGTA

>NZ_CP028103|6|6|2571656-2572336|CRISPRCasFinder
ATAATAAATACAGGAATAATAAGGGTTTCTTCA	AATTCTGCTCCAGGTTCTGAAAGTATTAATGGAATAAAGAATTATAAAAATACAATAGGAGAT
ATAACAAATACAGGAGTAATAATAGTAAGTAGT	TTTAGTGGTAGTCATAGTCATGGGATATATCAATATGCAGGGACATCAAGAGAT
ATAACAAACACAGGAATAATAAATGAGGTTGGT	GCTTCTGAGTCAAATAGTTATGGAATATATAATCAAAGAGAAGATGCAGGACAGGAAAGTATAATGGGAAAT
ATAACAAATATAGGAATAATAAGTGTTTATACA	AAGGACACATCTGTTGCTGGGCATGCTTCTGGTTGGGGAATAGCTAATACTGGTAAAATGGAAAAT
ATAATAAATATGGGGATAATAAATGGTTCTGGG	AGGCATTATGGTCGTGGAATATATAATATAGGTACAATAGGAGAT
ATAACAAATACAGGAATAATAAATGGTTCTAAT	TATGGTGGTGGAATAGATAATTCGAATAACACAATGGGAAGG
ATAACAAATACAGGAATAATAAATGGTTCTAAT	AATTATCATGATAGTCGTAATTTTGGTCGTTATGGAATATATAATAATTCTCTTGAAGGAAATTTGATTAAGGCT
ATAACAAATACAGGAATTATTAATGGCTCAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005948270.1\|2588583_2589063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005949683.1\|2587440_2587803_+\|adhesin	unknown	unknown	gnl\|CDD\|370466
NZ_CP028103.1\|WP_005948263.1\|2570454_2570724_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_107123255.1\|2576427_2586552_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP028103.1\|WP_005948269.1\|2588023_2588560_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP028103.1\|WP_107123300.1\|2558728_2559526_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP028103.1\|WP_107123257.1\|2586985_2587417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948271.1\|2589492_2590086_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|181361
NZ_CP028103.1\|WP_005948261.1\|2566539_2570148_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_107123254.1\|2575849_2576410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948262.1\|2570168_2570462_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_107123246.1\|2560780_2561095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948258.1\|2560429_2560669_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP028103.1\|WP_039995603.1\|2574986_2575256_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028103.1\|WP_107123253.1\|2561335_2561572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_070578932.1\|2561163_2561346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_167467247.1\|2562465_2566125_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028103.1\|WP_005948257.1\|2559512_2560319_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP028103.1\|WP_005948265.1\|2574700_2574994_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_107123256.1\|2586746_2586968_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005948271.1\|2589492_2590086_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|181361	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH.	2.07507e-56
NZ_CP028103.1\|WP_167467247.1\|2562465_2566125_+\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.49595e-15
NZ_CP028103.1\|WP_005948263.1\|2570454_2570724_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.49289e-15
NZ_CP028103.1\|WP_107123255.1\|2576427_2586552_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.13626e-37
NZ_CP028103.1\|WP_005948269.1\|2588023_2588560_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	9.05836e-23
NZ_CP028103.1\|WP_107123300.1\|2558728_2559526_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.1005e-08
NZ_CP028103.1\|WP_005948261.1\|2566539_2570148_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	9.26902e-15
NZ_CP028103.1\|WP_005948262.1\|2570168_2570462_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	3.21228e-08
NZ_CP028103.1\|WP_005948258.1\|2560429_2560669_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	8.82634e-06
NZ_CP028103.1\|WP_039995603.1\|2574986_2575256_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	3.1575e-16
NZ_CP028103.1\|WP_005949683.1\|2587440_2587803_+\|adhesin	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	3.9442e-10
NZ_CP028103.1\|WP_005948257.1\|2559512_2560319_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.96429e-49
NZ_CP028103.1\|WP_005948265.1\|2574700_2574994_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	6.86574e-12

>NZ_CP028103.1|WP_005948263.1|2570454_2570724_+|HU-family-DNA-binding-protein
MNKRELAKIYSTITQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNRGILEVLERKPRLVSNPSTRELMKIYPKKVVRFRASKNIMK
>NZ_CP028103.1|WP_005948262.1|2570168_2570462_+|HU-family-DNA-binding-protein
MTEKEFIKFYKKRNLSRSYKEVKEKIDLFWDTILKALDEDGKVSLKDWGVFEKKEVAPRKIMTPRMEKERVTKAGEKISFRTGTGLKTLVNRDDTDE
>NZ_CP028103.1|WP_005948261.1|2566539_2570148_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIEKIMKAVKSSNKKRSRNITIGAVIGFLLSCTVVMGEDNYLWIKEDGGEIKFSTDSTTGADGGWKTTNPYSDNNWNKDTEPKTYTNNMILSSNKTDGNYGTNLSYGLRLSGELTDVNFVNNGSIIGIMRDTSGSSKGYGIYNSAKMGNIENTGVISGSGIYNGSTNCYGYGIYNNSSAEIKDITNTGTISGIGDNTSSSQGYGYGIYNDSGAKIQDITNTGLISGYGTGTRVVYGYGIYNSAEMGNIENKGIISGTGIDNTYDFGKGYGIYNDSSAEIQDITNTGVISGYGTSLSTSGEGYGINNNSGTMGAITNIGIISGYGDNSGGSGYGINNNSGKMGAITNIGVISGYGINGDKYGKGYGYGIDNSATMGNIENTGVISGSTTSGAYCEGYGINNNSSDTIGGITNTGVIYGKTNAIKNNSGTIGTVDNYGILATQGSSIIDGSTGTKNNYGMYIGENGQITVDDTKSSDESIEVVVGYTEDGKEIVKDMTIKNATLNGDSGSATSTVSFVLEGESGEYDNSILNGKDETLKVSEGNHELNDSIINAYETAVVMDSKDSALILNNTIANGGAAEDGEVATIEIKGENNTLTLKGESIVNTGGKDNVAITVEGENNVLVLEGNAKVNGEMKATGENNTLNLYGKVNSNLNKSNNISEAASMNILHNITGFTNMNIYNNVTFFEDVKVTETEKVTIAETGTLNLRLKNTGSEETVGEELIPKATHAFSGSTGMIIQGEGNGVDIAGTLRFITNGIGKKIYVDMKNIELRNLYFKTSSIIDGYKVNDKVSVILGAYENLDKIYKPENTRKGSQNSNRYESLNNIYKGIYSSKEDNLNALRVLISFDSSKNNYDESTSDEEQLKNLMSYLGSIYTETPYSYSSELSRKSMEMFRDIVTENQFKPNLNQWLIMGGLTHTDGGTKDSYYGQNYHGFDTGTADVDVDMKLTGAYALGKYGYSENVSLGVTTGGNKSEAKLPMSKVKGNSGYVGAFAENYRGNLTLKAGAGIQYSEYDANRATLGGHSYSDKYSDMAYDIYLNGRYSHNIGENLFLEPYGTLSYTYVDQEGANEGSKVLAIETDSKSFDYTAAKMGVDLKKVIPHEKGKSTLSAGVSYTRLLTGADEENITGRFKGKDATNFDILVAHKNEHSIELNAKYTLELESGILFDVKGSYSFERDSHNGNGKNRNKGEWIVGAGLGYKF
>NZ_CP028103.1|WP_167467247.1|2562465_2566125_+|autotransporter-domain-containing-protein
MKNITNTGEISGTAKGLDGGTYGGAGYGIYNYQGTIVDIENTGRISGTGSGFSSSDGEGEGYGIYNSSSTMGAITNTGEISGTGKGDGTGAGTGYGINNSSSGKIGDITNTGEISGSGKSTSGKSEGSGIYNSAEMKNIKNTGRISGTGADSSSDSKGYGIYNDSGAIGAITNEGVISGTSTNGTGIHNASGISKEMGKIINTGIISGSGNSTSHASTGYGINNSSGKIGDIKNTGAINGSGKTSGASTGYGIHNDKTYGKEIGNITNEGVISGSGTSTGGNGEGYGIYNGATMGDIENTGLISGTGYNNTSTGTSDTGSGIHNKSDSKEMGKITNIGIINGYGAGESSSTGTGYGINNESGTIGDTTNTGVISGYGSGHDTGYGYGISNITTPGNTTTMGAIINTGIISGTGTGGSGSGIYNGSSGTMGAITNTGVIYGKDNAINNTNGNITVNNYGILVNEENKDVNAGISDTNYGLIIKNEGDNITVGTAGTQDIPIPFYDAEGNIMGERKVTIGNVAGKNDDKSNSFSGNKENHILNALTNTYKVTGENNNVTGSIINAYGTAVVFGDTGDNNQLTLSGTIVNGGIDEDDSNPDPTVKVAAISGSGNGDTLILQSGKIEYTDNKVEKSATQNTIVNGNIDMGAGDDTLTIGDGTIINGTLDGGVGTDTLNFGISSGAKSIPAKSQGVNIIHNISNFQKMNINTNVTLFEKTLETYGKETDLKVTGADEIKIGKNGTLTLRINSSKTVNEGGDDKITGHALYGNTGVISSTDGGKLLLALNGAGNENIISFGSTTLGDGLVPEKGTLDTTSALHTLEIINNKDVKVIVRQNIPGFFEIPEYEKLNKIYHGILSVEDLIANFNVDDESLSIFLGYLNDIYAGNPYSYSSELSRKSVGMFRDIATENQFKPELNKWLIMGGLTHVDGGTKDTYYGKGYYTYDIGSSDMDADTKITGAYMLGEYGVSDTLAYGVVIGGNKLKSELSNGSKVDGDALYMGAYAKKYVGNLKVTGGLGLQYGDYDADRIAVNKVASSLAEPVMKYCDNYNDMTYDIYLNGRYSHNIGNNLFLEPYGTLSYTYVDQEGADEGNKVLAIETDSKSFDYTVAKVGVDLKKVIPHEKGKSTLSAGVSYTRFLTGADEENITGRFKGENATDFDILVAHKNEQSIGLNAKYTLELESGILFDVKGSYNVERDSHNGTGKNRAKGEWIVGAGIGYKF
>NZ_CP028103.1|WP_107123253.1|2561335_2561572_+|hypothetical-protein
MINNAELFFKIITTTGTFFLAYHRYTLSLFEKKIDKGECEKERIFAEKFRIENIKTLTEGISRIEERMTRIEEYLMKH
>NZ_CP028103.1|WP_070578932.1|2561163_2561346_+|hypothetical-protein
MKTIIIKFLKYFISRWFGTKAMEKVVITALGELVKRTESKIDDKIYEAVFGKLEEEKNDK
>NZ_CP028103.1|WP_107123246.1|2560780_2561095_+|hypothetical-protein
MAGENQVILAVVQKEMEKVENAIKREKAILKNIDDITATLEHIAELVESGKEFPENSAYESYKDWQESAEKEIKSYTTSLETIDKYRSLLAAYQFYVKNNTPEA
>NZ_CP028103.1|WP_005948258.1|2560429_2560669_+|helix-turn-helix-domain-containing-protein
MNREEYIYMKLESLSPLDKALSKEMVKYLGEWATIEEVAKYLKKHKNTIYDKVDGGDLLYRRIGPSILIYTRSIIFLLE
>NZ_CP028103.1|WP_005948257.1|2559512_2560319_+|ATP-binding-protein
MEKCKYCGKEYRENPMSHIEKLPEFIKEKIKYIPDCNCLEEISKKEMEELEKKRVYEGMKNKIKKYKDISVIDNKFLESRFGNADMSEKYMILVKKYADNFLVKEKKTGILLYGDVGTGKTFASACIANYLMEYGKTVIVINLALYLNRLSIEWGEKEKTILEQTEKCDLMIIDDFGTEKSLNENQSGWRAEKIYNLIDARYRSNKPLIITTNLNFNSDESKCELTEKFSIQGKNRIRDRIIDMCFPVRVTGKSRRGITREKFLEFMG
>NZ_CP028103.1|WP_107123300.1|2558728_2559526_+|helix-turn-helix-domain-containing-protein
MKDKNLNIISKAIYAYICSYAGKGKDAFPSQKLISNDLGINIGTLAKYTQELKDSGYITVKGHKEKGKFSKNLYTINIELNMVSPCTVKTDTETTEYGQIDTNNNNINNNIKTNNNSVNNNTLTKGKSKKNIEKTTEDKKEKLENAPVEIQQILKKYKELELPDFDYRPENYILLRAYGELGAVKLFEALTLMSQSEFVKNNMSINAIFKIENLKKALNGNFKNKVNNKKGTKTEFKKPVYEDFTGELIDEILSEKIGDIEDGKM
>NZ_CP028103.1|WP_005948265.1|2574700_2574994_+|HU-family-DNA-binding-protein
MTEKEFIKFYKRRNFSRNHKEAKEKIDLFWNAILKALEEDGKVVLKNWGRFEKKEVKARKIVIPKMNEAVITEAKKKIRFRTGTGLQDAVNGFDADE
>NZ_CP028103.1|WP_039995603.1|2574986_2575256_+|HU-family-DNA-binding-protein
MNKKELAKLYSAISQGKISQKAALEEIDIFLETMQEALVISGKVKFIKKGTFEVLKKEPRIVSNPSTRELMKIYPRKVVRFRASKSIIK
>NZ_CP028103.1|WP_107123254.1|2575849_2576410_+|hypothetical-protein
MKKVLGIFLFLSCLTTALYSQEISEKEGKKVLEQIRKEIQAEEKAKQKAIEDEEKARIAAQKAEEKKGKKIIEEIRRDMNESLEEKVFRSENTPEARIAAAGAAFEIGKERMVFLKMEEEEIMKLEEVLGMEPDEKRVFLSQKYDEVYDEFKSNNNEIELLLLENEKLNEYLSRLDKMEQKVRAGN
>NZ_CP028103.1|WP_107123255.1|2576427_2586552_+|autotransporter-associated-N-terminal-domain-containing-protein
MRKGDIEKSLKRFLKRKVSYSLSLLIAFMITGGISLGAGITAEEIQETKGDLLTKIQAEREEIKRKIAENERMIKEYNSDFVELVRKGDFYSKPLFNSTQVFLSYQYLDNGKMKDRTDKEFSETIDAINKHYGTKSGRSLLRATGNIGKDKIMAGNGVAVDTEVFRETIEVGANIKPIHPSLPLVNPSVSVNVSAPTVNLGALPGTVSPTIVGVPTISAPSISAPSAPSGVSVSVSTPSAVAAISVTAPTITTPTAPSDKTITVLAPIAPDGYTPSVIPVPGKPIAPPTPTILLFTPYDIVFNGTGFGQPSGKSTPKSNIIMQNYEKFISSGITITTGSTGTSWTGNITTESGGSSNLTTGSTGSILNAFISHVDNLNAEVTGNYDFTGTTGGNNSKLFISLNPYYVQGTDKTFDFQGTLVMHGNGPGTSEALVGMEHQILTYVQGGTSTGTSIMKNSGTIELNSGKNMIGIQIDTEYDNASPEFLKQPQTINAGLIKISSGASQSIGIDFGLYYFQNASVSGPNNKTWLGNIEVNGTNNYGFRMKDYYGVPNPSTGVSTTIYYDKIQVTGERGTAGNYGTITLGGNKNIGISVAQGHSTGDPIQNLSNLSVVVGGTENVGFYRNPNYSGTNHNAMIMNSTRIHDFKFAAGATNSTLFRSDLDEIILTKNLTLTAGSAGNSIMQAGGVGKVTNQAVVTSSLPTFYGLTAGDFNSSTGATASNTGTITLTGNNSIGMAIATGNTGNNSGTINFTGTGGSGIYNRGIFNLTNGSKINIEGTTSSGIYNLKPVVGANTVSISGTVGIDVKKGATAIYSNGGTITSTSGNALTISVDDTSNPATRGLAVYAEGGAAVNLGAAKIDVKNGAAGVAAFGAGTSINLTGAELKYSGEGYAAYSDGNGTINLTNANLELSGKATGVELDLLSPKVTMNNTTITMMSNDATVANLKNATGLLTSNLKSTVETNLGSGVSIANGFDGINTFDKYKIATVDGGDLTIDDDMSKYNQNETTTGYFYSRRFLGQRLKLTVDMGVKVLSLTDTTYATAYFNNQIVGLEMSSSKAATSATDAQINLLANSEVSVDRVDAGNGAIGLYMNFGKVDIAGGAKVEVGKIYGGSNKAVGVYAVNGSTVLNNGSIEVGGDQSIGILGMAYREQPIGTPLVNEFGTGGIFTAQGKADITNSSKITLDGKGSIGIYAYNNNTLGTEADVTVTNTATGEIKVGSSDASNAAIGIYGDKATISNQGKVSVGDGGVAIYAKNKTKVASLGILDLGADGVGVMLDGTSDLSATTVTVTSNNTGTLGKTAIYYKGTGGETKNIGVAVNALALDKGTAIYAEDMSVSSSGALSIGTSGVGIYIKGSSTNTGTNTGTITLGTGKTGAVGMYTKTANILNDTTTGIINVNDASQIGMYAEGSGVKAINQGTINLKVDGTTGIYVKAGAVTELNTGNKIVFDGKSSVGVFAENSSVNFKDNQTLTSTNENKNIFVYGKDATVGIDSGKTVTIDGVGTPTTPGNKTVGIYLENVSTGSTFNGTGKLNVTNEAVGIYSKGNNTLNVDVTAAGDKTTGIFIDGTSIISGTVAATGTATAGAVGVYGSGGAVTIDTGGLVLNTNSGRGTGMYLTDGASATGGTITVNNTVAGTKNIGVYYSKGTASGTVTNGSVISIANNESIGIYAADGITLVNNSNITSVAGKSENIGSYVGGGSQLTSTGTITMNDDDSIGIYVEEGRGINSGAIAMNGTASSLSKSVVGMAAETQTGKTAVAENAAGGTITAGANLGMYVGGTGTSSGKNAGTITTTTGTGVYVDGSTNSFDGTGGTINSNAVGMYLKNTGVNKITAGTFNIASGGVGVFGENANIDFVVNVSGVEAVGVAAKTNSVISGNITTTGQDSVGVYVLDNSVTFNGANITTGTKSGLPLKSSIGILLKSALGTYTMSNVTVNAQDGVGIYLDGTTPGTNLTHSGTINTVGGIGIYVDNGTTLTTNTTVLNINGGTGVYVDGGTANLGTIGSLTFNFLAGGGIGVFNNGGTMNLGANINVTGSGSLAATTNGSLSSSGTLNIGEGATGLMGLYDSGLAAAHSVNNSGTITAVSGGIGLAAVKGGTNPGFPVTINNTGTINASGKSSTNTPSIGIYTDVADVANTGNINVGSNGIGIYSAHNGVLTSVQNNNMNMTGTDGIGVYIKGATNGLTANNINSTSSRNTGVVLEGTAGNINVGTVNLGNESVGVFATGTAVSTIDGTISTGEGSASKSAIGIVAQNGADMTMAGTATITTGNKGIGVYAEGASTTATVSNAGNISVGATGIYMYSKGATLNFSGNITANNQTGIVAEGGTINVMGASTITVQNGGVGAYVKGAAPAFGTTTIDVQTGTSSIYSMGVYYDGVSSIGTAPVITQSGSYTLGMALNSSTGTTAGGISIGGAGTSNQVGVMAKGNSNLTVAGTVNISGGDNNIGIYGENSIITVNGNVAVGNSSLCINKASSSIGVVLSGGSYTGSGNLSAGNYSIGVFGKKMAPGSVITQGTGTETMAVGTEGVGIYGEGTGGTITANMSNITVGTGNAIGVYAKGMDSVVTGNMGIGANTSVGIASEGTGNITYTGAITIDDKGTGKDDTASVGIYKKLGSGTITTSGGNWSVGNSGYGIYVQQAIVTVDAAGKEISTTMTSNSATINNSADMNLGMSSVGIFSNGANTVNNSGNITVGETYVEGGPSNHSDPTKHLNSVGIYGAGGTKIFNAAGATIKVHEDHSVGVYVDGSNIITGDKTRFENYGIIDVDNGGVGVIVRNGAIAVNEGVITLGGNASPICGAVNVGMSASGPGSTIENNGIITINSGAGMVVGNQANLINTGTLNVNNGVGITGTGHITNTGTMNVAPGATGEDSSGLATAEVGVVTIKPDGTILINDQYTAIGGTLSTAGDIIVDGAYVDATTGTPLFNAHSVSGEVRLLPNFASTGNGISYEMEGFVNTALGTITGTKLTPVTSPLFIAKITDKGSLVIAKRPYADLTIGEQFDAMDKGLDNILKNSGGSGRDADILKGLNEYLEGLPADQFERETSLKLAEFRGDIYATIQGRMQDINQAFNNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGLLYMKEKEGTEYGSKYGYTIGFAGSKFDFDDGGSKEDVYSLRVGAHRVKNLSDEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVAFDNKLTKVIYTDLSRQLDVYADLDLEYGKVDDFKEHAGSKGGLEVQIKDNDYLSAQAAAGVKASQRIYAGNDISVKVTADVKYAYEFGDNYDGNKARLKNGEEGYYSLITPEEREGKLSGKVGLTVEKANHMGVTFEVEAADESHKKDSSIKYGVRFNYKF
>NZ_CP028103.1|WP_107123256.1|2586746_2586968_+|hypothetical-protein
MVEKRKRGRPLGSGVKNYCALGCRFTEKEYLLIQESFKSLKEEYGTNNKIILNLFKKYGKYLDGKDNKKKIKV
>NZ_CP028103.1|WP_107123257.1|2586985_2587417_+|hypothetical-protein
MIKLTKKELETLGENKDAIAQLLVRKAILEEMGKKEYTEEEKKYLEEMKLNMEIEFYLNSIAQKTVQIHDYELLEVYKNNAELLKDKNTVEVYPQVQQALFNQKLGEEKVKVINEIVEKYKINDVLKEYIKVEESAKKEEENK
>NZ_CP028103.1|WP_005949683.1|2587440_2587803_+|adhesin
MKKIIIGCLLAVSAVSYSATDVMSTLEQLELNLQQLEAEERAMYNQRKAEAEEAEKTLEAQRKMYAEISEKEKRILSVKDNKFYKGQYQELAKKYGEAKKELEADMRKQEEIISIFEAIK
>NZ_CP028103.1|WP_005948269.1|2588023_2588560_-|phosphatase-PAP2-family-protein
MFHFFESIDIQILFFIQEHYKTSLFDKLMPIITKLGNIGIFWIVLACIFIFIKKYRKIGIMIFISIFLCTLLGNIILKPLVKRIRPFELVYFTQLLISAPKDFSFPSGHTMVSFASASIIISQNKKWGIYAFILAFLIGFSRLYLFVHFPTDVIIGAFIGSILGVVSIKIYNKYIIIK
>NZ_CP028103.1|WP_005948270.1|2588583_2589063_-|hypothetical-protein
MEKLPNINSTSSIIIYFKVHDFLFYEKFIISLKNFFTCFFLKIINTFSEIVFQYIYLQLKFTNKTSKKYKILNIIFKNSDLDFYDKIFSNHLFEYFLKTHLTKMENQVLKFLILNIDETKIYNRTGMDSIFINKRIEGIRKKFKKFMEKEDCHFKNYTS
>NZ_CP028103.1|WP_005948271.1|2589492_2590086_-|sigma-70-family-RNA-polymerase-sigma-factor
MINIHTIHAAQEGDEDAIQQIFESFKQLIIFKTKKYFFHGGDRDDVMQEAMIGLLKAINAYDENKNASFTTFALLCIKRQIITALKNSNSGKNRILNMAVSTSSDDEDEADLTYDNKSFNFYNPEEIYLSKEKMKYLNQYLKTHLSPMENEIFEYMLAEMSYTEIAKKTGRELKSVDNSIQRIKKKLKTFIEEYEKN

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Crispr_ID: NZ_CP028103_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_7

2616252-2616391

Orphan

Consensus_repeat	Method
TGGAAAATAACTATAAATTATGAATAAAAAAGTATAGAGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028103_7

>merge|NZ_CP028103|7|2616252-2616391|CRISPRCasFinder
TGGAAAATAACTATAAATTATGAATAAAAAAGTATAGAGAAGAGTCAAAGAGAATATATAAAAATAAAATTTTTTCTATTCTCATTTTTTAGTAAAGTGGAAAATAACTATAAATTATGAATAAAAAAGTATAGAAAAGA

>NZ_CP028103|7|7|2616252-2616391|CRISPRCasFinder
TGGAAAATAACTATAAATTATGAATAAAAAAGTATAGAGAAGA	GTCAAAGAGAATATATAAAAATAAAATTTTTTCTATTCTCATTTTTTAGTAAAG
TGGAAAATAACTATAAATTATGAATAAAAAAGTATAGAAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005948287.1\|2612561_2612903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948292.1\|2616567_2616906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_167467220.1\|2621975_2622125_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948289.1\|2613208_2613499_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028103.1\|WP_005948291.1\|2615491_2616172_+\|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948299.1\|2624576_2625590_+\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
NZ_CP028103.1\|WP_005948294.1\|2618092_2618497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948283.1\|2600362_2601502_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP028103.1\|WP_005948281.1\|2598539_2599298_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP028103.1\|WP_005948296.1\|2620622_2621567_+\|omptin-family-outer-membrane-protease	unknown	unknown	gnl\|CDD\|236813
NZ_CP028103.1\|WP_005948290.1\|2613939_2615499_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948288.1\|2613002_2613203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948295.1\|2619487_2619799_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948298.1\|2623892_2624465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948297.1\|2622670_2623555_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP028103.1\|WP_005948282.1\|2599301_2600339_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP028103.1\|WP_005948293.1\|2617026_2617392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948284.1\|2601928_2602522_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369610
NZ_CP028103.1\|WP_005948300.1\|2625807_2626419_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380320
NZ_CP028103.1\|WP_107123258.1\|2602539_2612508_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005948289.1\|2613208_2613499_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	2.75001e-14
NZ_CP028103.1\|WP_005948281.1\|2598539_2599298_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.5408e-76
NZ_CP028103.1\|WP_005948297.1\|2622670_2623555_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.21403e-63
NZ_CP028103.1\|WP_005948282.1\|2599301_2600339_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.5972e-75
NZ_CP028103.1\|WP_005948299.1\|2624576_2625590_+\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	1.93972e-31
NZ_CP028103.1\|WP_005948300.1\|2625807_2626419_-\|nitroreductase-family-protein	gnl\|CDD\|380320	cd02144, iodotyrosine_dehalogenase, iodotyrosine dehalogenase. Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.	3.45403e-101
NZ_CP028103.1\|WP_005948284.1\|2601928_2602522_+\|hypothetical-protein	gnl\|CDD\|369610	pfam07946, DUF1682, Protein of unknown function (DUF1682). The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found.	0.00642811
NZ_CP028103.1\|WP_005948296.1\|2620622_2621567_+\|omptin-family-outer-membrane-protease	gnl\|CDD\|236813	PRK10993, PRK10993, omptin family outer membrane protease.	1.66352e-43
NZ_CP028103.1\|WP_107123258.1\|2602539_2612508_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	6.45821e-33
NZ_CP028103.1\|WP_005948283.1\|2600362_2601502_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	8.57448e-106

>NZ_CP028103.1|WP_005948291.1|2615491_2616172_+|LytTR-family-transcriptional-regulator-DNA-binding-domain-containing-protein
MIKIGTDIKENLLILLREVLDYEFIEYKRSNVDFQIFIIDIASEEADMKIKDIFLKGIPIIVVLGKNDIQKMRTLFLNKQVADCILRHDIYEIEKSIDRLKNSQIKYTQFYLNDIYQKGILEFSEVTYINYCRVSRRVQFNILNKEIFTLKINFSTVETSLIEFTNFYKVERGTIVNINLIKYLDYKEEKILFKDLSELYISKIKLKEIEENTFITKNKLYLRNTQ
>NZ_CP028103.1|WP_005948290.1|2613939_2615499_+|hypothetical-protein
MNKKILLYIIMTSIFLILILKYDSRNENDFIYIVPRIKYTEVLDRNIGEYSILSLNKTYLNFKTKNFINGKLFLNVPNGEYLLRVNYDNQVKYIPFVKNDTWKKMTIYLQGDIFSRNQKIVLNIVTLALIILNFNIYLKIKEHIKKVKALDFSFFLLMVKLFFSVKADIENNFMVTIDFLISIILVTNLILYILNYMLDKKYKKMRIFIYILLILTLFHYAIICVNLIFPKVYAHLYQHHEIILIFLQRLYKFINLRRIILIMLVFNLVINKKFLEFTNKFYWIAIIAVYFFLEFFYLLFPKAINLYYFIRLIEYMCIYWGICFINLRIYNQNINRVVRYILGFTISYIVLFYFKDLKDPFLILFTIFILDFYTEALKKIMVFKDKNVEKTYNKLCLAQNELEFKEELEKEIQKNINIKSVSVKLFFNNKAIKKYLNNLNFIEDDLYIEKNNIKGTKYSFGIRLAFNKNPCVGIIFIEENSTSLNVEEMRYLSKLAENISSIASNIRLNSIYKEISFYD
>NZ_CP028103.1|WP_005948289.1|2613208_2613499_+|HU-family-DNA-binding-protein
MKEIEFIKELKEKRELRSMKIAKNKVDIFWEGIVDVLKTNEKLEFKGWGKFEVKETKERIFSNPRTKKIEKIPAQKKITFKQGKNLKRSFNTKVKE
>NZ_CP028103.1|WP_005948288.1|2613002_2613203_+|hypothetical-protein
MEIEKKKESDKQRYRLYGCWLTKKEYIFIKNKLKTLREINGVKRNNTEILIELFKLALEDENKSKG
>NZ_CP028103.1|WP_005948287.1|2612561_2612903_+|hypothetical-protein
MNEKIERRGRPLGSGNKVRTILGMRVSYEEYNIVKEGLVKLKPKFKTNKKILIYLFEKYNKFHMVNKLELEELLLELISKELNKINYSKEEKIQLKKIYKEIQTKGLKNLFNI
>NZ_CP028103.1|WP_107123258.1|2602539_2612508_+|autotransporter-associated-N-terminal-domain-containing-protein
MKKNNVEKALKRFLKRKIGYSLSLLVVFMITGEISLATGITTEEIQENKNELLKKIQIEREEIKKKIIENEKLIKKYNSDFVELIRKGDFYSKPLAPSTQVFFSYQYLDNGKMKDVTDKEFKETIDAVDKYYKLGKDSGIVKIQEGNGVSVDDTVFRETVEIGANIKLIQPDLPKVNPNVSVTASAPIVILGTLPKTINPVVASVPTVIAPVISTPLAPNEVSVELSTPNPVEKITVATPVIKTPTVPSEKNVKVTNPTLPEGYNPTIIKLPTAPSLPVVVPVNVSSPSITGSGANPTVRYYWWDGNDGVISQISLKSGEYIINGSSGNYSVGVTGYDAEAFAGTNPQGNKPANGTYTVNKNFFHTLLNVPYSYYGENTKIVFNSNHAKLIDLETEGIVNGNLDNRVAEGLITSETRDRLREYQTYSGIKGNNNTELLFVNKGKVDINGTNSAYFFTTSHTNGGLRTNYLDNEGTIIVNGDKSAVYMHSPDTQEAKAYIYSNGPTGKIYVDGIGASLMQWVYRNLPYNRAAFVNEGIAEIRGAEAIALYMSDNSPFHIGHTAYIKKPIELLGDKSVGLVAQNTNITNEKNIVKFNIGSKKQAIEKGNSINSIFTNPDGSARANDPNLVEQAIGILMDNSSTTKTAAQIEIGEHSYGGIGIFGKNGTIEILKPYGNPAEKSSVKISGGEGNIGIIAQGGDVKFDGDILIEGGKNNQIAIAQNGKTITMKGDVIAGKDTKKIEDTVAIYAKNSGTVINIEKDKLSLNLSGNSTGLFATNQGSIITDRTSLTLSQPDANGNISEPTTPANIYVEGKIQADGSTSGLGIYASDGGKISVKNTYVKVKDGTVGAVATGSNSNIDLSGGIVDYSGDGYAVYTSNGGTVNLSNGEIILRGKATGLELDLSTPSSNPITLTGAKIVVMSNDAVGVNLKNIGTLNIGTLKTDIENKLGGVNIVAGTNGTQVFDKYKIAAVDGGILNINANMDKTDTSTTSPGFFYYRRFLGQRLKLNVLNGVEVKSEINSSDASTYFKGQVVGLEMNSSKAAGSATDAQINLAAGSKVIADRTDAGAGAIGLYMNFGKIDIAAGAKVEVEKGANTVNDKAIGVYAVNGSTVSNAGDIEVKGNQAIGILGMAYREQPAETPIVNEFGAGGIFAEQGKINIVNNKYIGLGGTGTIGIYAYNNNVAGTKADSKVSNDINGIIDVGSSTATNAAIGIYGDKTTISNLGIISVGNNGIAIYAKNNSEIKALGTLNLGADGIGVMLDGTSDLTATDVRVTSNGIGTLGKTVIFYKGEGNTSKEIKVNIDISDLDNGTAVYSENMNITSKGALNIGTAGIGIYVKGTETNSGYNEGNITLGAGKTGAVGMYTKTAHIVNNAAGVINVNEASQIGMYAEGINSQVINKGTINLNADGTTGIYIKGGAKTELDDRSNIRFGGKSSIGIFAEKALVDFVENVTLKNANENKNIFVYGKDATIGIKANKTITIDGEVISSTGNKTVGIYLENAGTGSRFISNTTGKLNVVNEAVGLYSKGNNNLDVNVTVTGNKTTGIFIDGASEITGSVTARGNAVGIYGSGGAVTVGAGGLTLNTDTGRGTGMYLADGASATGGTITVNNTAAGTKNIGIYYSKGTASGTVTNSSDISLTGSESIGIYAADGITLVNNSNITSTAGKSENIGSYVGEGSQLTSTGTITMNDSDSIGIYTEEGKGENSGTILMNGAPSGLNKSVVGMVAGAKAGKTAAVENAAGGTITAGANLGMYIGGAGTNSGKNAGTITTTTGTGVYVDGSTNSFDGTGGTINSNKVGMYLKNTEANKIKTGTLNIASGGVGVFGENSKIDFTVDTSNSGGAVGVVAKGTSVISGNITTGQDSVGVYVLDNSVTFNGANIATGTKTGTPLKSSIGILLKSALGAYTMSNVTVNAQNGVGIYLDGTTPGTNLTHSGTINTVGGIGIYVDNGTTLTTNTTVLNINGGTGVYIKGGIANLGTGGNLKFNFLAGGGIGVFNNGGTMNLGANINVIGSGSLAATTNGSLSSSGTLNVGEGATGLMGLYDSGLTAAHSVNNSGTITAVSGGIGLAAVKGGTNPGFPVTINNTGTINASGKSSTNTPSIGIYTDVADVANTGNINVGSNGIGIYSAHNGVLTSVQNNNMNMTGTDGIGVYIKGATNGLTANNITSTGSRNTGVVLEGTSGNINVGTVNLGNESVGVFATGTAVSTIDGTITTGEGSASKSAIGIVAQNGADMTMAGTATITTGNKGIGVYAEGAGTTVTVGNTANITVGADGIYMYSKGATLNFSGNITADNQIGIVADGGTINAVGASAITVQNGGIGAYVKGAAPTFGATAINVQSGTSVKYSMGIYYDGVAALGAVPTITQTGNYTIGMVLNNSAGSTAGGISIGSATENNQVGVMAKDNSNLVITGDISVKGNKNIGIYGEESQITTRGNLLVGDSPISEDKSISSIGVVLNGGSYTGSGNLSAGNYSIGVFGKGMAPGSIITQGTGTERMSVGTEGVGIYGEGTGGTITANMSNITVESGDAIGVYAKGMDSVVTGNMGIGADTSIGIASEGNGDITYTGNMIIANKTERASVGIYKIDGRGTITTSAGNWTVGNSGYGIYLKQTAGESALIENKANITLGMSAVGVYSEGANRVTNTGTITVGSTNVNGEPNDKTKHENSIGMYLSGGTMATSSGTITVNHEYSVGIYGQGEGTSFTNKGIINIDNGGVGVLVRDGATAINETNGNINLGGTLVSSGNRTIGMAAYAGATIENRGIITVNEGVGMLVGTQANLINKGTIYVKNGTGIEGIGNVTNTGNIIVTGKGKTEDSSNVTAARVGAVVIQPDGTILINDKYTAIGGTLSTVGNVIVNGAYVDVTTKTPLFNARSVSGEIRLLPNFTLTGNGISYEIKGFVNTAIKTITGTKFTPVTSPLFIAKVTNAGDLVIAKRPYADLTLGKQFDTLDKGLDNVLRNSGGNGRDAEILKGLNNYLEGMEKNKFTGEASKKLAEFRGDIYATIQGRMQDINQAFNNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGLLYMKEKEGTEYGSKYGYTIGFAGSKFDFDDGGSKEDVYSLRVGAHRVKNLSDEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVALDNRLTKAIYTDLSRQLDVYADLNLEYGKVDDFKESAGSKGGLEVQIKDNDYLSAQAAAGVKAQQRVYVVNDVSVKVTADVKYAYELGDNYDGNKARLKNGGEGYYSLITPDEKEGKLSGKVGLTVEKANHMGVTFEVEAADESHKKDSSIKYGVRFNYKF
>NZ_CP028103.1|WP_005948284.1|2601928_2602522_+|hypothetical-protein
MKRKKLLFIFLFFSFSVFYVSTYSQEISEKEGMRVLKQIRKEVQLEEKEKARAAREAEKIKAAEEKAKISAEKAEEKKGKKILEEIRRDMNESLEEKVFRSENNPEARMVAAEKAFEIGRERMAFLKAEEKEIMELEKSLGIEDANRDVFLGQKFDKVYDEFKSNNNELEILLLENEKLKEYLSRLDRMEEKVKAGN
>NZ_CP028103.1|WP_005948283.1|2600362_2601502_-|ABC-transporter-substrate-binding-protein
MIKKNFLKLFTICLFISFIFLGKNVYSNELQQHEKSNRITFTDLSNRKIEIDAPVNRIFLGFYEESYLAVAENFDKVVSISKGEWADFFNDQYNAYEKQMPEIAKIIDTGSIYKGSFSMETLLNSKPQVAIVAPFQYETLAENIDKLEKSGIKVIVIDYNSQTLENHIKSTKILGKITGNEKRAEELIRNYENALNEVKERVENIKNRKKVYIELGNLGADQIGNSYGNYLWGSLVKLAGGNNIAENKIDSYGPLSPEYILTSNPDTIFFAGANWANDAGNRVLIGFNVSPEQTWKRLTPYTKRTGWKKLNAIKNGEIYAVNHGGLRSIYDYVYVQYIAKSLYPELFEDIDPKENLENFYKKYLPITPEGTFMTKYNKK
>NZ_CP028103.1|WP_005948282.1|2599301_2600339_-|iron-ABC-transporter-permease
MNKKINGEEVYKKINKKRQMAFYISLVAIIIMLLFDLMTGSSGMTLKDTLKALLAGPSSESIEASIIWNIRLPMTLICLTVGASLGLAGTQMQTILSNPLASPYTLGVSSAAGFGAAIAFISGFPFKGIPWLNAPFMAFAMTLLGTMAIYFLGKLKGMKAQSMVLFGIVTHFFFQALLSLVQFRSTPEVAGQIVYWMFGSLLKSTWTGVIVSGVIFLICSILLSRYAWKLTAIAAGEERAKSLGIDTDKVRLHVFLLSSLLTAGAVAFVGTIGFIGLVAPHFSRYFAGEDQRYLAPMASLFGVLLIACASILAKIIIPGIIIPIGIVTSLIGVPFLIFLILKKGV
>NZ_CP028103.1|WP_005948281.1|2598539_2599298_-|ABC-transporter-ATP-binding-protein
MLKMNLTDIKISYGKSNIIKNIKAEFHGGKVISLIGPNGTGKTTLLKAIAHLVKYEGDINVIGETGYKNFRDSFTYVPQMSVNNINLTVFEIVLLGRVRDLTWKIEKIHLNAVAEILDELNLSHLSYSKFSSLSGGQKQMVIMAQAMVSKPKILLLDEPTSALDLKHQLQIMETAKKYTKKTGSITVIVLHDIALAARYSDEILLLHEGYSVQQGIPEDVLKEELLEEIYGVELDISKSSRGFISITPIKTK
>NZ_CP028103.1|WP_005948292.1|2616567_2616906_+|hypothetical-protein
MRKKLVAILGLVFFTLTYSCEYDEKVNDLLKNEIVTIEDREILISLKDWDKLSDIEKKELLGMMNRYTRKHTKKSAYMVIEKESRVKLAEIGVTDVVLYEYIPPKVEEQEKE
>NZ_CP028103.1|WP_005948293.1|2617026_2617392_+|hypothetical-protein
MERTVKNELEQGLINSMVKVHSLLRESFMTRKKASFKVKVPEFKYSELMHHGELRLALKCLKWNYRELLRYLKNENYSPLLKIVFLYNHQNCIPVILNITIEEFLESDLFVGREILSIKNI
>NZ_CP028103.1|WP_005948294.1|2618092_2618497_+|hypothetical-protein
MKFEMYLINLGTEEREKIVMNLGNIKEFEEMKYLLDKNNKYRVSYANVKEVVAATIFYEKEPVAFFFFAHEEDKEILIEILKENNLYNNFYEHENYILGYKVIEEKYFNEEVKKQMRDFIKFLLLEAFVGPYTV
>NZ_CP028103.1|WP_005948295.1|2619487_2619799_-|hypothetical-protein
MKKIFLVILGSFILLSTVTFGCPDKKLHNTVTEYLGLSKAVHVEGKRMFISSDALAREAMDSSEGDVKEAEKIVKAILNHLYAYSKSHDLEIIALNEIKGWNK
>NZ_CP028103.1|WP_005948296.1|2620622_2621567_+|omptin-family-outer-membrane-protease
MLKKEVLILFTCISTGVFAQSNNTLNFSLGTVNGKAGEYVYVPETGEKVSYLDWKIKNIPVFIVDYTHIQGNTEFQIGLKKNFGSNSSGRMKDYDWYSSDDAEDGATPNDYGKLSNFSDNKNYVDNLFMFDTNIRYWFNHSENLKSGPILGFKYDYFKFYAKGGDQYNYSLDGSVDIMKDDYSKKSIKYSQKFFTPYIGYGVSYTYEKLVLGFEVKGSLYGKAKAKDRHLERGPMEDKEKYKNMKNLGIKFVAKYPITPSIDINGTVEYSKYFHKKKSTTDFITEDGEKINGIKNLSGIKNSNYVVSLGLTYKF
>NZ_CP028103.1|WP_167467220.1|2621975_2622125_+|hypothetical-protein
MFLLAMVWAIIEGIKRAIGDLMEDSWSERIIFIIVALLLIYLYKSTGRI
>NZ_CP028103.1|WP_005948297.1|2622670_2623555_-|RluA-family-pseudouridine-synthase
MIKKSKKNTVFKVEEKNELMNFLIEKMPEKSRTSIKSLLTKRKVFVGNDVVSQYNHPLLPGQTVTVDWGKVTIETVMKGVSVIYEDDDILVVEKENGILSIATNNEREKTAYNILKDYLKNKDPKNKIFVVHRLDRDTSGIMIFAKTEKAQDILQTTWNDSVKERTYIALVEGTVQKEKDTIISYLQENRAFITYSSQNPKDGKKAISHYKVLKKNKNYSLLEVNIETGRKNQIRVHMQDIGHSVVGDKKYGSGKSPINRLGLHANTIVFVHPITKKVLHFSSKIPSVFTKIFN
>NZ_CP028103.1|WP_005948298.1|2623892_2624465_+|hypothetical-protein
MKHEEFHAFSNKKFDDYSEKKREEAIKAFGCEIAENANDLTSGELKGFIEEKMGEYFDKYYVKEVKIKEKEIKKEESEKDIIIYVPYDGNVEMLRLKPSVSSDETLKVFLNEKEIGVKVKDLASKTKEEISEETDKIVEELKKNLDSLKKDIEECNKELKKGLKDEAEKIKKRIEKDKEKLKEIKEIIKK
>NZ_CP028103.1|WP_005948299.1|2624576_2625590_+|toxin-antitoxin-system-YwqK-family-antitoxin
MKNKLAAVFLTIFLFGCGGPKEVDISKKQEKNGIVYVENEKKPFTGKIISKYENGQMKMDSQYKDGKLEGIVREYYKDGQIQNEWNYKDNHLDGEQKKYYENGQLSSEKYFKDNKPDGVFKEYYEDGKIKSETEYKKGKKDGLYKLYIENGNLKYEANFKNGKIDGLFKEYHENGNISIEANIKNEKKEGLYKKYYENGNLNIEANMEENKIRGEYKVYYENGQLYSETKYKDGKQEGIYKQYYNNGQLNIETSYKDGKKNGSYKSYYMTGEIADESHYKDGKLEGSHKEYYKNGQLMFEKNYKNGKAEGVVIFYTSDGKEEKKVRYKNDEIIKVIK
>NZ_CP028103.1|WP_005948300.1|2625807_2626419_-|nitroreductase-family-protein
MSDISKILLEKSKKRRTYRQFLEEPVDIDIIKDCIMTAATAPSGADKQPWHFSIIIDPVMKEKIREESEKIEKEFYDSKITKEWQEDLNKLTLTWKKPFLTQAPCLIVIFKEFYKENSDGTLDKNYYVNESIGISIGFLINALHNAGYASLTYTPAPMMFLRDLLKRPSGETPVMILVVGKPDPSYSLPLLTKKTFEEIAEII

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Crispr_ID: NZ_CP028103_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_8

2643850-2644723

TypeI-B

Consensus_repeat	Method
GTTGAATAGTAACTTGGTAGTTTTTAAAT	CRISPRCasFinder
GTTGAATAGTAACTTGGTAGTTTTTAAAT	CRT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	PILER-CR

13 spacers

cas4,cas6,cas8b1,cas7b,cas5,cas3,cas1,cas2

The CRISPR arrays of NZ_CP028103_8

>merge|NZ_CP028103|8|2643850-2644723|CRISPRCasFinder,CRT,PILER-CR
GTTGAATAGTAACTTGGTAGTTTTTAAATTGGTTCTGGTATAAACTTAGTAAGACAGTTTAATAATGTTGAATAGTAACTTGGTAGTTTTTAAATAATGCTTTAGTTCCTACATTAAAAGCAAAACTAACAGTTGAATAGTAACTTGGTAGTTTTTAAATTAAAAAAGCTTCTTTTAAAAGCTCTTGTTGTTTTCCTGTTGAATAGTAACTTGGTAGTTTTTAAATAAAATATTTTGATAAATTTAAAAATTAGTGTAAATAGTTGAATAGTAACTTGGTAGTTTTTAAATTCTAATAAAAGTGAAAAAATAGATGAATTGTTTCTGTTGAATAGTAACTTGGTAGTTTTTAAATTCTAATAAAAGTGAAAAAATAGATGAATTGTTTCTGTTGAATAGTAACTTGGTAGTTTTTAAATTCTTTATATTTTTGCACTTAAAATGCACTTAAAAAAGTTGAATAGTAACTTGGTAGTTTTTAAATTCTTTATATTTTTGCACTTAAAATGCACTTAAAAAAGTTGAATAGTAACTTGGTAGTTTTTAAATTTTAAAGATGTTCCAGCCATACTTCCTTTTATTCCAGTTGAATAGTAACTTGGTAGTTTTTAAATTTAAAATTTTAAGTTTATATAGAACCTATAGTCATTGTTGAATAGTAACTTGGTAGTTTTTAAATTTGTATTCCTCATAAACTTTATCAAAATGTTCACCTGGTTGAATAGTAACTTGGTAGTTTTTAAATATATTTAAAAAATAGCTCTCTCTCCTCTTATCAAAGTTGAATAGTAACTTGGTAGTTTTTAAATAGCAAAGTCGAGAGTCTTTATATGATTGATTTTACAGTTGAATAGTAACTTATAATAAAAATTTT

>NZ_CP028103|8|8|2643850-2644658|CRISPRCasFinder
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TGGTTCTGGTATAAACTTAGTAAGACAGTTTAATAAT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AATGCTTTAGTTCCTACATTAAAAGCAAAACTAACA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TAAAAAAGCTTCTTTTAAAAGCTCTTGTTGTTTTCCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AAAATATTTTGATAAATTTAAAAATTAGTGTAAATA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTTAAAGATGTTCCAGCCATACTTCCTTTTATTCCA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTAAAATTTTAAGTTTATATAGAACCTATAGTCATT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTGTATTCCTCATAAACTTTATCAAAATGTTCACCTG
GTTGAATAGTAACTTGGTAGTTTTTAAAT	ATATTTAAAAAATAGCTCTCTCTCCTCTTATCAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT

>NZ_CP028103|8|1|2643850-2644723|CRT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TGGTTCTGGTATAAACTTAGTAAGACAGTTTAATAAT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AATGCTTTAGTTCCTACATTAAAAGCAAAACTAACA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TAAAAAAGCTTCTTTTAAAAGCTCTTGTTGTTTTCCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AAAATATTTTGATAAATTTAAAAATTAGTGTAAATA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTTAAAGATGTTCCAGCCATACTTCCTTTTATTCCA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTAAAATTTTAAGTTTATATAGAACCTATAGTCATT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTGTATTCCTCATAAACTTTATCAAAATGTTCACCTG
GTTGAATAGTAACTTGGTAGTTTTTAAAT	ATATTTAAAAAATAGCTCTCTCTCCTCTTATCAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AGCAAAGTCGAGAGTCTTTATATGATTGATTTTACA
GTTGAATAGTAACTTATAATAAAAATTTT

>NZ_CP028103|8|1|2644047-2644658|PILER-CR
GTTGAATAGTAACTTGGTAGTTTTTAAAT	AAAATATTTTGATAAATTTAAAAATTAGTGTAAATA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTTAAAGATGTTCCAGCCATACTTCCTTTTATTCCA
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTAAAATTTTAAGTTTATATAGAACCTATAGTCATT
GTTGAATAGTAACTTGGTAGTTTTTAAAT	TTGTATTCCTCATAAACTTTATCAAAATGTTCACCTG
GTTGAATAGTAACTTGGTAGTTTTTAAAT	ATATTTAAAAAATAGCTCTCTCTCCTCTTATCAAA
GTTGAATAGTAACTTGGTAGTTTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_039995612.1\|2641300_2641645_+\|ArsC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|239275
NZ_CP028103.1\|WP_107123260.1\|2638489_2641288_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|235175
NZ_CP028103.1\|WP_005948323.1\|2656763_2658260_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP028103.1\|WP_005948308.1\|2634132_2634324_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948315.1\|2645564_2647370_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP028103.1\|WP_005948314.1\|2644850_2645546_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP028103.1\|WP_005948307.1\|2633242_2633887_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP028103.1\|WP_107123259.1\|2634481_2637319_+\|ATP-dependent-helicase	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|223288
NZ_CP028103.1\|WP_005948322.1\|2655436_2656558_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_CP028103.1\|WP_005948317.1\|2648319_2649072_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP028103.1\|WP_005948313.1\|2643052_2643676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948319.1\|2651669_2652152_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP028103.1\|WP_005948311.1\|2641892_2642321_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP028103.1\|WP_005948321.1\|2653311_2653596_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP028103.1\|WP_039995654.1\|2642402_2643056_+\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NZ_CP028103.1\|WP_005948318.1\|2649079_2651656_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP028103.1\|WP_167467235.1\|2641732_2641900_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270872
NZ_CP028103.1\|WP_005948309.1\|2637321_2638503_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP028103.1\|WP_005948316.1\|2647372_2648317_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP028103.1\|WP_005948320.1\|2652161_2653163_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_039995612.1\|2641300_2641645_+\|ArsC-family-transcriptional-regulator	gnl\|CDD\|239275	cd02977, ArsC_family, Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.	1.97288e-21
NZ_CP028103.1\|WP_107123260.1\|2638489_2641288_+\|AAA-family-ATPase	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	1.51851e-37
NZ_CP028103.1\|WP_005948316.1\|2647372_2648317_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.09765e-48
NZ_CP028103.1\|WP_167467235.1\|2641732_2641900_+\|hypothetical-protein	gnl\|CDD\|270872	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3. This subfamily is composed of the atypical yeast protein kinase Abc1p, its human homolog ADCK3 (also called CABC1), and similar proteins. Abc1p (also called Coq8p) is required for the biosynthesis of Coenzyme Q (ubiquinone or Q), which is an essential lipid component in respiratory electron and proton transport. It is necessary for the formation of a multi-subunit Q-biosynthetic complex and may also function in the regulation of Q synthesis. Human ADCK3 is able to rescue defects in Q synthesis and the phosphorylation state of Coq proteins in yeast Abc1 (or Coq8) mutants. Mutations in ADCK3 cause progressive cerebellar ataxia and atrophy due to Q10 deficiency. In algae and higher plants, ABC1 kinases have proliferated to more than 15 subfamilies, most of which are located in plastids or mitochondria. Subfamily 13 (ABC1K13) of plant ABC1 kinases belongs in this subfamily with yeast Abc1p and human ADCK3. ABC1 kinases are not related to the ATP-binding cassette (ABC) membrane transporter family.	0.00101772
NZ_CP028103.1\|WP_107123259.1\|2634481_2637319_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.1676e-93
NZ_CP028103.1\|WP_005948307.1\|2633242_2633887_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.78922e-17
NZ_CP028103.1\|WP_005948314.1\|2644850_2645546_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.844e-14
NZ_CP028103.1\|WP_005948322.1\|2655436_2656558_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.47333e-09
NZ_CP028103.1\|WP_005948317.1\|2648319_2649072_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.98484e-51
NZ_CP028103.1\|WP_005948319.1\|2651669_2652152_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.33032e-47
NZ_CP028103.1\|WP_005948311.1\|2641892_2642321_+\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	1.02729e-45
NZ_CP028103.1\|WP_005948321.1\|2653311_2653596_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.27656e-26
NZ_CP028103.1\|WP_039995654.1\|2642402_2643056_+\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	8.99232e-96
NZ_CP028103.1\|WP_005948318.1\|2649079_2651656_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.96758e-33
NZ_CP028103.1\|WP_005948315.1\|2645564_2647370_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	2.73719e-05
NZ_CP028103.1\|WP_005948309.1\|2637321_2638503_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	1.23899e-38
NZ_CP028103.1\|WP_005948323.1\|2656763_2658260_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP028103.1\|WP_005948320.1\|2652161_2653163_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.07265e-144

>NZ_CP028103.1|WP_005948313.1|2643052_2643676_+|hypothetical-protein
MKNFSEKTVKNISICFLLLFLLLGLNHHYYFALMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLLSAFIFYCQYYLQGEVVSTKEVIALKGTISFCIGMWLGSFIAKYIYMRIKFFINRIGSKGEQKEYKIIKMIIDQKRYFKKPGSKYYINFYYLIADVNGEEVKFLIEKEFYDKYLGKKSMNINIKKGSLGIFYGINLVDLETK
>NZ_CP028103.1|WP_039995654.1|2642402_2643056_+|epoxyqueuosine-reductase-QueH
MKINYDLVMEKQLEEIEKNKIKPKLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFQEEYMKRLEEQKEYHKKRGYQINVIEGRYNSEIDFFQSIKGLENEKEGGKRCHQCYRIRLEETAKKAKEDGYEYFTTVLSISPMKNAQWINEIGEELEKEYGIKFLNGDFKKKSRYLKSIEISKEYELYRQDYCGCIFSKLEREKNEKEKRENNGGER
>NZ_CP028103.1|WP_005948311.1|2641892_2642321_+|N-acetyltransferase
MIRNLKNDDIDIVMELWKDSTIEAQNFIPDSYWLENYDNVKNNYLPNSDTYVYEEDGEIKGFVSLIENIFIGGLFIRVDSQREGIGSVILDFLKERNDKLQLTVYDKNERAMKFYLKSGFKILNTEIDKKTREKEHLMEWRR
>NZ_CP028103.1|WP_167467235.1|2641732_2641900_+|hypothetical-protein
MSNGEIEKLEKMIDELKEELHECDYEPERNALLKKYKRLTVQMEELKKLKRKKND
>NZ_CP028103.1|WP_039995612.1|2641300_2641645_+|ArsC-family-transcriptional-regulator
MIIQIFGKKNCNGSKKAERFFKERGIKIQFIDLKEKAPSKGELKSICSKYPLEELIDTEGMDYKKRNLQYMVFNLEETLLENPVLFKSPIGRFKNEITLGYQPEVWKNWTEKLK
>NZ_CP028103.1|WP_107123260.1|2638489_2641288_+|AAA-family-ATPase
MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREAIKYGKKSAKIEIEFTGIDGEDYIVTRKIPGSTSIYKKDNPDFQLIGKEDRIRELCGIKGDLKGIYDNVIVAKQNEFISSFKEKDNEREKIFNKVFNTDIYKKIYEGYSRDAVNRYEKDIEIERSSMENIAEIMEDPADIKEKLEFEKGRAKEYNSSLALLNEEKSKVKEFLNSYNALNIEIEKLTGEINALSESIKNKNEEFTKVANSIKESEISEKIVKENREKYEEYQKYSQEINILKIRKKELEKIKEECLLYEKEINSLEKLNSEIDGEIKVFENKKENNESLLLERKNKLFEIEKEIIDKKGKSVEYKSELSKITPLLIKLEEFEKKLEVGENNIKNFEIKLEEKLEDINKEKEKRKYLMSENLENQLSELEEHEKNKKLLEDEILKKDLLLKENEEAFEMLKTSYCPYLKEQCKNLDGKNIDEYFKDKREKYIKEIEEKKNTVKEINNKLINKNEIMEKIIRLDTLSKEIDEKEVEFIQEKLKLETGKSKIENEKLKLKNFKLENNIESKEKLSEIKITLKTKIDSLDLLKSEEIKGGLEKEIENLNKNINIELKNIEEKKIVIKENIKILEEKRNFLNENKIFSNELITINTNIDKLEKKTNSLERSSNLYLENYKKAMEKNELEKNLENIKIIIENNQMKFKEKSTLLELKRKDIESIELEKIQKKDEEITSDIEEIREKLGAVNSEVETLKKKLDEVKKYEDLLKNKRKYLEKLNMKLELTKIFREKIKSMGKEVSKNMLKEIEILATENFRKITGRGEKIVWSNEDKNKYVVFLDGDRGELKFEQLSGGEQVAVAISIRGAMSELFTESKFSIFDEPTNNLDTERRRSLADSIGEILKNLEQSIIVTHDDTFREMAQKVIEL
>NZ_CP028103.1|WP_005948309.1|2637321_2638503_+|exonuclease-SbcCD-subunit-D
MKILHCSDIHLGKKPFGTKEFSQKRYLDFFYAFEQAADRGIEKKVDIFLITGDLFDKKELSPDTLDRCEKVFLKLKNNNIQALLIEGNHDNISGYDEINSWLGYLERKGYVRRGKYKASNDGYEFEKITIEDVNFYGVGYPGFAVDEVLEKLSENLNENEKNIVMVHTALGGSEFLPGLVNTDIIKKFKDKVIYMAGGHLHSFVSYPKDKPYFFIPGSTEFWNVLNEKNNSKGVIIFDTDTLEYEFSELSPRKRIEKEFTYEKDITLEFEEFSKNLELTGEELVIVNVKLKDSGYVNVNELEKILESNGALKGYIKLRYPNSIFDRNLGEEGYYSVRDVEREIINCWEEFSDAEKITSYLQKFKEYQEENDREKDFFELFDAMLEEEIGDENK
>NZ_CP028103.1|WP_107123259.1|2634481_2637319_+|ATP-dependent-helicase
MEHKEINLNKEQKEAATHIEGPLLVIAGPGSGKTRTLVERVVHMLIEKKISPEKIMVSTFTDRASKELIGRISERIKDCDSKININDIYMGTLHSICLRLIDEYIEYSDFSEGYQVLDELEQHFFIFSKIKEFKEIEGYNEFFKEIPAANNWGKAGKIQKWVNRINEEGRSLDYVKEEQDKKIEFLKKAHELYQKLLIEDNVIDFASIQREIYKMLLNNDTVLEEIREKIQYIMIDEYQDTNSIQEKIIFELGGNRKNICVVGDDDQGIYRFRGASVKNILEFPNKFDENECRIITLDINYRSHKDIITFCNRWINLINWKNFRYQKDIQPPADKEFVDNPGVIRIGGNSENQWKENIYKFIKNLKAMGKIEDYSQVAFLFKSVRFSRVKELIDYLEERGIPTYSPRSKNFFYRKEVKLVLGALLVLFPQTKPLVLDDVYIRKTAAYYNDCIAVLKKYLAKDKELYEWILKNREKNIDLGEEKGENISRIFYSLFAFNTFKELIDLSKNGAKEGREIYNLGILSQIFDKFENISRIEYITKENIEKVVRYFFVTHIRLLFEKGIDEYENKETLLGAVSFMTIHQAKGLEFPVVIVGSLESEPDNRELTEEDRLEDIITLGNDFEPRDRKNIFDFWRVFYTAFSRAQNLLVLTSIENRAGGKELPSKIFKPVYETIPYWNDEIFHFEKLQISKLKETETKEFLSYTGHILIYEDCPLRYRFYKEFEFKPLKNNKTSFGILVHKTIESIHKEVKNNTEKIYSDEELKELVEKNYNILKKNVRVFLGENIRERAFEQIKRYVDSVKNNWNNLISSEEKEYSVEDNYILEGTIDLLRKQDDYIELLDFKTGRFSGYDDSRYASYERQIEIYSYMLREKYNLENLRAYLYYTGNKNEPMVEIKLEKNKIEKTISDFEDTVKRILNKEFNRREYSEEKCRECEFKDYCRGE
>NZ_CP028103.1|WP_005948308.1|2634132_2634324_-|hypothetical-protein
MKEHKYVNFSQEYDVNYIVNRYPKKVHETVKEYLQTLKAQKNLTHEDVFSLIEKNLKLKKIAK
>NZ_CP028103.1|WP_005948307.1|2633242_2633887_-|DUF1275-domain-containing-protein
MLCFLGGYINAICIVKYSYTVSHFTGNISKTAINISQGNFSEVFKVFTIIAAFVIGTTISGSLVDGREFNLKRRYGYASITLGSGLLILYSFLYDTLPFFYYLPFMIGVENGLFISYKGVVVRTSHITGSLTDMGVYIGHCIKGKTEDKWKVFFCLFTILSFMAGGFFGIEAFYVFKKEAFLIAAFLYIGVGLTYFSIRQRYQKILGYSDLKLY
>NZ_CP028103.1|WP_005948314.1|2644850_2645546_+|CRISPR-associated-endoribonuclease-Cas6
MESWVLELKVFLLEDIESHSAIEKIAALIDSTFDKSEYWKKYHKDKKVKEYCFNSFYPVKVNAQKYNAGEIYTVQIRTISKELKEHFMKYLKDNITKELKGLIIKEKEIKYRYIDKLVSVTPTIIKTENGYWRENITLEEYENRLKLNIIKKYNSIFNEKIDENIDLFNFIEFKNKVPVKVKYKNINLLGDKLTLGIAKNETAQKLAFLCLSVGLGEMNARGFSYMNPRWV
>NZ_CP028103.1|WP_005948315.1|2645564_2647370_+|hypothetical-protein
MLRECVEIFTEIYNQKGERFITDSYELEPGDYFIVKSDGSYSHIKIERRKKSEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESMEKYYEILKNPFLKYDKGEKKRVYTQLEEKLGKPSEEKIQKNQEWIKTNLYKIKEEIKAGKEYIKIFFDEDIKEYKKESERYIIPNIYNSIDYNVIIDNETYGLPNNNLNLNSKKPYLENKTRKKKYTVPYLLNEEEVFEQKKFFDYLYNMSNSGKRNIYISPDKKEIIPLKDSEFLDNNFTGYYLRIRKDKSESAVERYEIISDYRAEIYPEIKILDCLGNGDKGKLEYGSSIKKNSELAAKLNNLLFNGKLYGIIFENSKDLKIYDERVKNIVNQYKETFFKLIYKGELNAFFKSCENIFLELIKNYLFKNENKYPAYDMFNLMVSIEESLINKGEKTMDNYQKMKTKFREVLKTNEGIIENDDEFFYVVGQIVDYFISLNRTTEKTHKLINPILKVNNRKRLDQNLETMYKKYNYAIKRYEKENKDKSKMKFDKLFSLLSLYELENENINERNKRLIIGGYLSESLIYEKTDKENKDINGKENE
>NZ_CP028103.1|WP_005948316.1|2647372_2648317_+|type-I-CRISPR-associated-protein-Cas7
MKNRVYGIIGVKSIMANWNADFEGYPKTISSGETFGSDKALKYPMKKMWEAEGEKVLYIKSLKVDSGEGKKGEIAVRPKSLRERYDEIFETNLKEEKDKTNVIKNLFKAIDVKNFGATFAEEKNNASITGAVQIGQGFNKYVDTYPEEQQILSPFRDSSKDEKEGEANQSTLGTKIVSNEAHYFYPFVINPQVYKDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYVKFSKEKDYDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHNIKGAKEYNIFTRKEV
>NZ_CP028103.1|WP_005948317.1|2648319_2649072_+|type-I-B-CRISPR-associated-protein-Cas5
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYEGYNSQGEKEFPEFYEKLKDIKISIMPKNTNGSFSKKIQIFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKMEDTDIHKELKERMENYKFEYTIYLGKNDHLATINNVEVLQGESFLEDESEINSLFLRKDIEGFLEEEFNILGSEEDEIKYDYKYEEKLPISLDSISNQYKVESLIFTNKKCILKDKSNFAKINNQIIEFY
>NZ_CP028103.1|WP_005948318.1|2649079_2651656_+|CRISPR-associated-helicase/endonuclease-Cas3
MFEEELFSIEKYVKDENKVLAHISDIKNPETLLEHSDLVIKYFKKIYEDKNLKIIFDKLADKFWRENESTKKFWNEMIVNTIYMHDIGKLNINFQIDKMKNKIFDRKHLYQSKRHSNLSARIYIDHFGNKVFKLYSEKKLDNKTALKCFIFIILNSYIISRHHSSTKSLSEDFFNEIIKDYEEYKELFEEVNNYCPNLNFLIKESKNLFRILKQLKIGEKEWNNSIETKDWESVDYYIYTKLLYSLLVSSDFYATSEYSSGKPIESLNLLTNIDEYISVFNNTDIYKGIKLHQKTGKIFSKDNINYYRSEMFLEAEQNLGKNIKENILFLEAPTGSGKTITSINLALKLLEKNRELNKIFYIFPFNTLVEQTNASLREIFQGSFLEENISVINSITPIKEVENEDGRAQIDYERSLLNRQFIHSPIVLTTHVHFFENLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYAEILNIKIIIMSATLPNLSFLLNSEAQIPSLVINKEKYYRNPIFKDRVSLDFSLLEKEYEKEELFDQIEKIILEKYRDKKVVVEFIKKSSAFDFYKRLVEKNEDSKEDIFLITGDDNKAERKKIIKEAKDKKRKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKVYFFKLDDGGKIYKSDVRIQGRFTLMNEEMREILKSKNFSEYYSKILEVLDDFSNKEDEENIENFRRNKVVQLNFEEINKRLKLITDEMKTKMIFFSRNIKIEGEEIEGNKVWKEFKEVFLNNEIGYAERRVKLSKVMEKVDLFSYNIPKEMTYRLSYQDSIGDNILYIQDGEEYFVNGKFDRKKMQSKNDCEMIL
>NZ_CP028103.1|WP_005948319.1|2651669_2652152_+|CRISPR-associated-protein-Cas4
MPINGTIINYYIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKNTEEITVDNIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIVKKGKIEVIEKNKSSRKSYEIELTAENELHIKNIMEEIEKLVKEDELPPIEKNNKCKKCAYYSYCYI
>NZ_CP028103.1|WP_005948320.1|2652161_2653163_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGAGTKYILSKGTLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGIVLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKLYKEKIAKSIINGIGKNIYELLYHYYRHDKKELKEYLDWLSNEVEERLNKSSDINEIMAVEGEIWAKFYDSFKIFLREDFILNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFDCVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAIKYDAYKLIKFILENKEFIPFYMKEKM
>NZ_CP028103.1|WP_005948321.1|2653311_2653596_+|CRISPR-associated-endonuclease-Cas2
MKGKNYNYVFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKMRLELKDVIDKKEDFISIVKLISEHYFDEEIIGTPWKDDENIFI
>NZ_CP028103.1|WP_005948322.1|2655436_2656558_-|Mu-transposase-C-terminal-domain-containing-protein
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGISYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEYIEQICRESKETKISKLYSFCKEKLSNKYNISYPTFYRIVSNLDGFFNKSSNFHMKKIKKENQVYLILEISLYILVSEEESEHKIVPQLLISLDAATLKPINHALNYNTSSIYTLLSFIRESILKVSYKSSKLIKPQEILVSSENINNKKILKEIYDNTSIKITEYFSENEEIKKFISFLEEDIEKFYYQNNKNLSYQNLKSFLDSYIYLDNQKYDFTLKYGMVENISNVREFDVFLQEASRKISKSSLRFNNFIYTNNFLTTLEGKKVIVKYNPLDTDILYLFFKNQFLGTANIITTG
>NZ_CP028103.1|WP_005948323.1|2656763_2658260_+|PTS-transporter-subunit-EIIC
MKIFAEVQKIGKALMTPVAILPAAGLFLAFGNKLQFTLMEQAGQVIFSNLPLLFAIGAAIGLVGGDGVAALSAVVAILIMNTTMGIISGAAEGIAAGNMSYAMVLGIPTLQTGVFGGLIAGIIAAICYKKFYKTELPAFLGFFAGKRLVPIVTAVAAFIIGLAMPVIWQPVQIGLAKLSYLANETNTNVSTFIFGVIERSLIPFGLHHIFYAPFWYQFGEYTNAAGQVVNGDQAIWFAMLKDGVTNFSSATYQGAGKFLTGKFVFMMFGLPAAALAMYQEAKPANKKLVGGILFSAALTSFLTGITEPLEFSFLFVAPILYGIHCIFAGLSFMLMNMFHVRIGMTFSGGLIDYIAFGVLPGTSGFQNNWYMVIVVGLCLSVVYYFGFRFAIRKFNLMTPGREEAVVESTSASSGSEIKSDELAVGVLEALGGKDNLISLDSCITRLRVEVKDTKIVSDQELKKLGASGVLKVGANGVQAIFGSKAQFICNDLKKMTGI

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Crispr_ID: NZ_CP028103_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_9

2653767-2655350

TypeI-B

Consensus_repeat	Method
GTTGAATAGTAACTTAGAAGTTTTTAAAT	PILER-CR
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CRISPRCasFinder
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CRT

24 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP028103_9

>merge|NZ_CP028103|9|2653767-2655350|PILER-CR,CRISPRCasFinder,CRT
GTTGAATAGTAACTTAGAAGTTTTTAAATTTGAACAATAGAAGTACTGATCTTCCTAATTTCTAGTTGAATAGTAACTTAGAAGTTTTTAAATGGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGTGTTGAATAGTAACTTAGAAGTTTTTAAATGGCATATCCTCTATCTTATTTAGTTTATCTAACTTAGTTGAATAGTAACTTAGAAGTTTTTAAATAGGTATTCTAATAAAGAAGTTAGAACATTTAGATATGTTGAATAGTAACTTAGAAGTTTTTAAATAGAAAAAATATTATCAGTTCCAGATAAGATGTTTAGGTTGAATAGTAACTTAGAAGTTTTTAAATAAAATATACTGAGCCACATTCAATATTTTTTCCATAGTTGAATAGTAACTTAGAAGTTTTTAAATTTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTAGTTGAATAGTAACTTAGAAGTTTTTAAATTGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAGGTTGAATAGTAACTTAGAAGTTTTTAAATATTTGAAAATCATTATGAAAATGTAAGTCATGAAAAGTTGAATAGTAACTTAGAAGTTTTTAAATTAAAAATATAACTTATAGTCCAGAAGCTTATTTACTAGTTGAATAGTAACTTAGAAGTTTTTAAATTCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCAGTTGAATAGTAACTTAGAAGTTTTTAAATTATGTAAATTCATATTTTTTTAAAGATGCATGGATGTTGAATAGTAACTTAGAAGTTTTTAAATAAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGAGTTGAATAGTAACTTAGAAGTTTTTAAATTACAGCTTTCTAGCCATTATTATTTCTTTGTATGCTGTTGAATAGTAACTTAGAAGTTTTTAAATTTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAAGTTGAATAGTAACTTAGAAGTTTTTAAATATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGAGTTGAATAGTAACTTAGAAGTTTTTAAATTTTTACCCCCTTAACTTTAAAAATGCAATTAATTTGTTGAATAGTAACTTAGAAGTTTTTAAATCCATTAATAAAATCCATTACTGCACTATCTATTTTAGTTGAATAGTAACTTAGAAGTTTTTAAATATTCTTATTTTGTCTAATATTTTATATCCTGTAATCGTTGAATAGTAACTTAGAAGTTTTTAAATATTCTTATTTTGTCTAATATTTTATATCCTGTAATCGTTGAATAGTAACTTAGAAGTTTTTAAATGGAATTAATAAAACAAAATGGTTCATGTGCAGGTGGTTGAATAGTAACTTAGAAGTTTTTAAATAAAAGTATTATTTTTTCTAACTTCATTTTTCAAATTGTTGAATAGTAACTTAGAAGTTTTTAAATACCAACTTATAAAATTATATTTCTTGCTAGGAAAAAGTTGAATAGTAACTTAGAAGTTTTTAAATCATATATAACTACTGCTACTGCTATTTGTTACAAAGTTGAATAGTAACTCAGAAGTTTTTAAAT

>NZ_CP028103|9|2|2653767-2655350|PILER-CR
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTGAACAATAGAAGTACTGATCTTCCTAATTTCTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGCATATCCTCTATCTTATTTAGTTTATCTAACTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGGTATTCTAATAAAGAAGTTAGAACATTTAGATAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGAAAAAATATTATCAGTTCCAGATAAGATGTTTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAATATACTGAGCCACATTCAATATTTTTTCCATA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTTGAAAATCATTATGAAAATGTAAGTCATGAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TAAAAATATAACTTATAGTCCAGAAGCTTATTTACTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TATGTAAATTCATATTTTTTTAAAGATGCATGGAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TACAGCTTTCTAGCCATTATTATTTCTTTGTATGCT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTACCCCCTTAACTTTAAAAATGCAATTAATTT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CCATTAATAAAATCCATTACTGCACTATCTATTTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGAATTAATAAAACAAAATGGTTCATGTGCAGGTG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGTATTATTTTTTCTAACTTCATTTTTCAAATT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CATATATAACTACTGCTACTGCTATTTGTTACAAA
GTTGAATAGTAACTCAGAAGTTTTTAAAT

>NZ_CP028103|9|9|2653767-2655350|CRISPRCasFinder
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTGAACAATAGAAGTACTGATCTTCCTAATTTCTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGCATATCCTCTATCTTATTTAGTTTATCTAACTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGGTATTCTAATAAAGAAGTTAGAACATTTAGATAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGAAAAAATATTATCAGTTCCAGATAAGATGTTTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAATATACTGAGCCACATTCAATATTTTTTCCATA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTTGAAAATCATTATGAAAATGTAAGTCATGAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TAAAAATATAACTTATAGTCCAGAAGCTTATTTACTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TATGTAAATTCATATTTTTTTAAAGATGCATGGAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TACAGCTTTCTAGCCATTATTATTTCTTTGTATGCT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTACCCCCTTAACTTTAAAAATGCAATTAATTT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CCATTAATAAAATCCATTACTGCACTATCTATTTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGAATTAATAAAACAAAATGGTTCATGTGCAGGTG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGTATTATTTTTTCTAACTTCATTTTTCAAATT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CATATATAACTACTGCTACTGCTATTTGTTACAAA
GTTGAATAGTAACTCAGAAGTTTTTAAAT

>NZ_CP028103|9|2|2653767-2655350|CRT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTGAACAATAGAAGTACTGATCTTCCTAATTTCTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGCATATCCTCTATCTTATTTAGTTTATCTAACTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGGTATTCTAATAAAGAAGTTAGAACATTTAGATAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AGAAAAAATATTATCAGTTCCAGATAAGATGTTTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAATATACTGAGCCACATTCAATATTTTTTCCATA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTTGAAAATCATTATGAAAATGTAAGTCATGAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TAAAAATATAACTTATAGTCCAGAAGCTTATTTACTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TATGTAAATTCATATTTTTTTAAAGATGCATGGAT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TACAGCTTTCTAGCCATTATTATTTCTTTGTATGCT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	TTTTACCCCCTTAACTTTAAAAATGCAATTAATTT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CCATTAATAAAATCCATTACTGCACTATCTATTTTA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC
GTTGAATAGTAACTTAGAAGTTTTTAAAT	GGAATTAATAAAACAAAATGGTTCATGTGCAGGTG
GTTGAATAGTAACTTAGAAGTTTTTAAAT	AAAAGTATTATTTTTTCTAACTTCATTTTTCAAATT
GTTGAATAGTAACTTAGAAGTTTTTAAAT	ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA
GTTGAATAGTAACTTAGAAGTTTTTAAAT	CATATATAACTACTGCTACTGCTATTTGTTACAAA
GTTGAATAGTAACTCAGAAGTTTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005948325.1\|2659847_2660723_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP028103.1\|WP_005948322.1\|2655436_2656558_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_CP028103.1\|WP_005948316.1\|2647372_2648317_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP028103.1\|WP_005948314.1\|2644850_2645546_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP028103.1\|WP_107123261.1\|2660719_2662198_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP028103.1\|WP_005948328.1\|2662311_2663484_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP028103.1\|WP_005948317.1\|2648319_2649072_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP028103.1\|WP_005948332.1\|2667348_2670402_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP028103.1\|WP_005948319.1\|2651669_2652152_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP028103.1\|WP_005948329.1\|2663502_2664825_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP028103.1\|WP_005948330.1\|2664836_2665856_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP028103.1\|WP_005948321.1\|2653311_2653596_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP028103.1\|WP_005948318.1\|2649079_2651656_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP028103.1\|WP_005948313.1\|2643052_2643676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005948315.1\|2645564_2647370_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP028103.1\|WP_005948323.1\|2656763_2658260_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP028103.1\|WP_005948331.1\|2666075_2667158_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|238866
NZ_CP028103.1\|WP_005948324.1\|2659400_2659838_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|179848
NZ_CP028103.1\|WP_005948320.1\|2652161_2653163_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP028103.1\|WP_039995654.1\|2642402_2643056_+\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005948325.1\|2659847_2660723_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	5.10822e-116
NZ_CP028103.1\|WP_005948322.1\|2655436_2656558_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.47333e-09
NZ_CP028103.1\|WP_005948316.1\|2647372_2648317_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.09765e-48
NZ_CP028103.1\|WP_005948314.1\|2644850_2645546_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.844e-14
NZ_CP028103.1\|WP_107123261.1\|2660719_2662198_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP028103.1\|WP_005948328.1\|2662311_2663484_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	1.88782e-122
NZ_CP028103.1\|WP_005948317.1\|2648319_2649072_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.98484e-51
NZ_CP028103.1\|WP_005948332.1\|2667348_2670402_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP028103.1\|WP_005948319.1\|2651669_2652152_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.33032e-47
NZ_CP028103.1\|WP_005948329.1\|2663502_2664825_+\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP028103.1\|WP_005948330.1\|2664836_2665856_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	2.3984e-175
NZ_CP028103.1\|WP_005948321.1\|2653311_2653596_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.27656e-26
NZ_CP028103.1\|WP_005948318.1\|2649079_2651656_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.96758e-33
NZ_CP028103.1\|WP_005948315.1\|2645564_2647370_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	2.73719e-05
NZ_CP028103.1\|WP_005948323.1\|2656763_2658260_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP028103.1\|WP_005948331.1\|2666075_2667158_+\|HDOD-domain-containing-protein	gnl\|CDD\|238866	cd01828, sialate_O-acetylesterase_like2, sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.36346e-15
NZ_CP028103.1\|WP_005948324.1\|2659400_2659838_-\|ACT-domain-containing-protein	gnl\|CDD\|179848	PRK04435, PRK04435, ACT domain-containing protein.	3.92872e-59
NZ_CP028103.1\|WP_005948320.1\|2652161_2653163_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.07265e-144
NZ_CP028103.1\|WP_039995654.1\|2642402_2643056_+\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	8.99232e-96

>NZ_CP028103.1|WP_005948321.1|2653311_2653596_+|CRISPR-associated-endonuclease-Cas2
MKGKNYNYVFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKMRLELKDVIDKKEDFISIVKLISEHYFDEEIIGTPWKDDENIFI
>NZ_CP028103.1|WP_005948320.1|2652161_2653163_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGAGTKYILSKGTLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGIVLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKLYKEKIAKSIINGIGKNIYELLYHYYRHDKKELKEYLDWLSNEVEERLNKSSDINEIMAVEGEIWAKFYDSFKIFLREDFILNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFDCVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAIKYDAYKLIKFILENKEFIPFYMKEKM
>NZ_CP028103.1|WP_005948319.1|2651669_2652152_+|CRISPR-associated-protein-Cas4
MPINGTIINYYIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKNTEEITVDNIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIVKKGKIEVIEKNKSSRKSYEIELTAENELHIKNIMEEIEKLVKEDELPPIEKNNKCKKCAYYSYCYI
>NZ_CP028103.1|WP_005948318.1|2649079_2651656_+|CRISPR-associated-helicase/endonuclease-Cas3
MFEEELFSIEKYVKDENKVLAHISDIKNPETLLEHSDLVIKYFKKIYEDKNLKIIFDKLADKFWRENESTKKFWNEMIVNTIYMHDIGKLNINFQIDKMKNKIFDRKHLYQSKRHSNLSARIYIDHFGNKVFKLYSEKKLDNKTALKCFIFIILNSYIISRHHSSTKSLSEDFFNEIIKDYEEYKELFEEVNNYCPNLNFLIKESKNLFRILKQLKIGEKEWNNSIETKDWESVDYYIYTKLLYSLLVSSDFYATSEYSSGKPIESLNLLTNIDEYISVFNNTDIYKGIKLHQKTGKIFSKDNINYYRSEMFLEAEQNLGKNIKENILFLEAPTGSGKTITSINLALKLLEKNRELNKIFYIFPFNTLVEQTNASLREIFQGSFLEENISVINSITPIKEVENEDGRAQIDYERSLLNRQFIHSPIVLTTHVHFFENLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYAEILNIKIIIMSATLPNLSFLLNSEAQIPSLVINKEKYYRNPIFKDRVSLDFSLLEKEYEKEELFDQIEKIILEKYRDKKVVVEFIKKSSAFDFYKRLVEKNEDSKEDIFLITGDDNKAERKKIIKEAKDKKRKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKVYFFKLDDGGKIYKSDVRIQGRFTLMNEEMREILKSKNFSEYYSKILEVLDDFSNKEDEENIENFRRNKVVQLNFEEINKRLKLITDEMKTKMIFFSRNIKIEGEEIEGNKVWKEFKEVFLNNEIGYAERRVKLSKVMEKVDLFSYNIPKEMTYRLSYQDSIGDNILYIQDGEEYFVNGKFDRKKMQSKNDCEMIL
>NZ_CP028103.1|WP_005948317.1|2648319_2649072_+|type-I-B-CRISPR-associated-protein-Cas5
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYEGYNSQGEKEFPEFYEKLKDIKISIMPKNTNGSFSKKIQIFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKMEDTDIHKELKERMENYKFEYTIYLGKNDHLATINNVEVLQGESFLEDESEINSLFLRKDIEGFLEEEFNILGSEEDEIKYDYKYEEKLPISLDSISNQYKVESLIFTNKKCILKDKSNFAKINNQIIEFY
>NZ_CP028103.1|WP_005948316.1|2647372_2648317_+|type-I-CRISPR-associated-protein-Cas7
MKNRVYGIIGVKSIMANWNADFEGYPKTISSGETFGSDKALKYPMKKMWEAEGEKVLYIKSLKVDSGEGKKGEIAVRPKSLRERYDEIFETNLKEEKDKTNVIKNLFKAIDVKNFGATFAEEKNNASITGAVQIGQGFNKYVDTYPEEQQILSPFRDSSKDEKEGEANQSTLGTKIVSNEAHYFYPFVINPQVYKDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYVKFSKEKDYDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHNIKGAKEYNIFTRKEV
>NZ_CP028103.1|WP_005948315.1|2645564_2647370_+|hypothetical-protein
MLRECVEIFTEIYNQKGERFITDSYELEPGDYFIVKSDGSYSHIKIERRKKSEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESMEKYYEILKNPFLKYDKGEKKRVYTQLEEKLGKPSEEKIQKNQEWIKTNLYKIKEEIKAGKEYIKIFFDEDIKEYKKESERYIIPNIYNSIDYNVIIDNETYGLPNNNLNLNSKKPYLENKTRKKKYTVPYLLNEEEVFEQKKFFDYLYNMSNSGKRNIYISPDKKEIIPLKDSEFLDNNFTGYYLRIRKDKSESAVERYEIISDYRAEIYPEIKILDCLGNGDKGKLEYGSSIKKNSELAAKLNNLLFNGKLYGIIFENSKDLKIYDERVKNIVNQYKETFFKLIYKGELNAFFKSCENIFLELIKNYLFKNENKYPAYDMFNLMVSIEESLINKGEKTMDNYQKMKTKFREVLKTNEGIIENDDEFFYVVGQIVDYFISLNRTTEKTHKLINPILKVNNRKRLDQNLETMYKKYNYAIKRYEKENKDKSKMKFDKLFSLLSLYELENENINERNKRLIIGGYLSESLIYEKTDKENKDINGKENE
>NZ_CP028103.1|WP_005948314.1|2644850_2645546_+|CRISPR-associated-endoribonuclease-Cas6
MESWVLELKVFLLEDIESHSAIEKIAALIDSTFDKSEYWKKYHKDKKVKEYCFNSFYPVKVNAQKYNAGEIYTVQIRTISKELKEHFMKYLKDNITKELKGLIIKEKEIKYRYIDKLVSVTPTIIKTENGYWRENITLEEYENRLKLNIIKKYNSIFNEKIDENIDLFNFIEFKNKVPVKVKYKNINLLGDKLTLGIAKNETAQKLAFLCLSVGLGEMNARGFSYMNPRWV
>NZ_CP028103.1|WP_005948313.1|2643052_2643676_+|hypothetical-protein
MKNFSEKTVKNISICFLLLFLLLGLNHHYYFALMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLLSAFIFYCQYYLQGEVVSTKEVIALKGTISFCIGMWLGSFIAKYIYMRIKFFINRIGSKGEQKEYKIIKMIIDQKRYFKKPGSKYYINFYYLIADVNGEEVKFLIEKEFYDKYLGKKSMNINIKKGSLGIFYGINLVDLETK
>NZ_CP028103.1|WP_039995654.1|2642402_2643056_+|epoxyqueuosine-reductase-QueH
MKINYDLVMEKQLEEIEKNKIKPKLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFQEEYMKRLEEQKEYHKKRGYQINVIEGRYNSEIDFFQSIKGLENEKEGGKRCHQCYRIRLEETAKKAKEDGYEYFTTVLSISPMKNAQWINEIGEELEKEYGIKFLNGDFKKKSRYLKSIEISKEYELYRQDYCGCIFSKLEREKNEKEKRENNGGER
>NZ_CP028103.1|WP_005948322.1|2655436_2656558_-|Mu-transposase-C-terminal-domain-containing-protein
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGISYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEYIEQICRESKETKISKLYSFCKEKLSNKYNISYPTFYRIVSNLDGFFNKSSNFHMKKIKKENQVYLILEISLYILVSEEESEHKIVPQLLISLDAATLKPINHALNYNTSSIYTLLSFIRESILKVSYKSSKLIKPQEILVSSENINNKKILKEIYDNTSIKITEYFSENEEIKKFISFLEEDIEKFYYQNNKNLSYQNLKSFLDSYIYLDNQKYDFTLKYGMVENISNVREFDVFLQEASRKISKSSLRFNNFIYTNNFLTTLEGKKVIVKYNPLDTDILYLFFKNQFLGTANIITTG
>NZ_CP028103.1|WP_005948323.1|2656763_2658260_+|PTS-transporter-subunit-EIIC
MKIFAEVQKIGKALMTPVAILPAAGLFLAFGNKLQFTLMEQAGQVIFSNLPLLFAIGAAIGLVGGDGVAALSAVVAILIMNTTMGIISGAAEGIAAGNMSYAMVLGIPTLQTGVFGGLIAGIIAAICYKKFYKTELPAFLGFFAGKRLVPIVTAVAAFIIGLAMPVIWQPVQIGLAKLSYLANETNTNVSTFIFGVIERSLIPFGLHHIFYAPFWYQFGEYTNAAGQVVNGDQAIWFAMLKDGVTNFSSATYQGAGKFLTGKFVFMMFGLPAAALAMYQEAKPANKKLVGGILFSAALTSFLTGITEPLEFSFLFVAPILYGIHCIFAGLSFMLMNMFHVRIGMTFSGGLIDYIAFGVLPGTSGFQNNWYMVIVVGLCLSVVYYFGFRFAIRKFNLMTPGREEAVVESTSASSGSEIKSDELAVGVLEALGGKDNLISLDSCITRLRVEVKDTKIVSDQELKKLGASGVLKVGANGVQAIFGSKAQFICNDLKKMTGI
>NZ_CP028103.1|WP_005948324.1|2659400_2659838_-|ACT-domain-containing-protein
MKEKYLIVNKKILPDYFEKVVEARNLLTEGKVKGISDAAKIVGISRSTYYKYKDYVFLPSDNSIGRKALVSMMLEHKKGVLSEVLNYLSSVNGNIITINQNIPINDVASVVISLDISDITIPIEDIISGIEQINYVNSTKLLSLE
>NZ_CP028103.1|WP_005948325.1|2659847_2660723_-|homoserine-kinase
MITVKVPATTANIGPGFDTLGLAFKLYSYFTFKRIEYGLRIVGCEEKYQNDSNLVYTSFKKTLEILNYPVPGIEISIKSDIPISRGLGSSAACIVGGVMGANIIAGSPLSKDEIFKICNDIEGHPDNIAPALFGGLTASLVEDGIPYTVQYNISENLYFCALVPDFRLSTAEARKVLPSEISYKDAIYNISRTAVLLKALENGDELLIKKSLSDRLHEKYRNVLINEYEEVKEICEKNGNTALFISGSGPTLMNIAKTKDFQWKIEYEIKNLKNSWIIRTLDIDMKGAVVL
>NZ_CP028103.1|WP_107123261.1|2660719_2662198_-|threonine-synthase
MNSKFESTREKDITCSASQAVIRGIASDGGLFVRRDMENLKINISELKGKKYTEIAEIILSKVLDDYPEKNIKYCVENAYDKKFNSDDITPLVKVGNDYILELFHGPTSAFKDMALSILPYLSTEALKLNKIKEKILILTATSGDTGKAALEGFKNIEGIKILVFFPNDGVSKVQEKQMITQEGNNTYVYAINGNFDDAQSEVKKIFTDEEIKEKLKKKNYSLSSANSINIGRLVPQIVYYFYSYMKLVERNEIVLGEKVNFTVPTGNFGDILAGYYAELMGLPVNKLICASNENNVLYDFIKTGTYDRNRSFYKTLSPSMDILISSNLERLIYHLSKNDNKYVKHLMAELKSNGKYTVSQEIKNYIDNLFYAGYTTDLQTSETIKNVYNEYNYLLDTHTAVAYNVMKEFKEKDSRHKNIVLATASPYKFSKAVYESLFGENNSDEFKIMELLNEKTKVPIPENLRNLKNKKDIHTSVINKKDMKNCFEVIL
>NZ_CP028103.1|WP_005948328.1|2662311_2663484_+|homoserine-dehydrogenase
MKIGLLGFGTVGSGVYEIVKSSPTCFFNDIEIKKILVKDEKDKVMDIITTDAEEILNDKDIDLVVEVMGGIHPAYEYIMKSLKSKKSVVTANKAVVAAYLKEFTKTAYENGVSFEYEASVCGGIPWIKSLEKAKRIDEINEVYGIFNGTSNFILDNMAKKGYEFQEILKMAQEKGYAESDPSADIDGIDIMRKLLITSSLAFECEIPEKEIDVFGIRNIQKGDIEYFNSIDCTVKLIAKGKKSENRYCASVEPVLFKNDRIEAAVPQNFNIGTICGKTIGELKFYGQGAGKLPTGNAIVQDIIDIMEAKGNLIERKFEKNLIKDSSLISGKYYIRINDKEFEKDNSNIIEKKLEYSGNTIYITKEIDCRTMKQAAEKYLKKDIFYARFEN
>NZ_CP028103.1|WP_005948329.1|2663502_2664825_+|aspartate-kinase
MIKVAKFGGSSLADAEQFKKVKKIIENDENRRIVVVSAAGKRFKEDNKITDLLYLCYAHIKYSVSYESMFSIIEKRYLEIRDQLGLKCNLESEFRVIKSRMKKGMNRDYLVSRGEYLAGMLMAEYLGYEFIDAENVIFFDYNGKVDIEKTREAVEKAVERNPKGVIPGFYGTLPNGEIKLFSRGGSDITGAIVSDCIKAAVYENWTDVSGILMADPNIVKDPKRIEIITYSELRELSYMGANVLHTDAVAPAKKANIPINIRNTNAPENPGTIIVDENNELLKNAKNYFITGIAGKKDFSVISIYKDHMSGEIGAIRKVLEIFEKYKVSIEHIPTGIDTFSIVVATENINKYLYEIVADIKRECEPSEVKVIDNISLIATVGRNMADRPGMSGKLFAAIGHSGVNIRMISQGSDEINIIVGVENEDFEKAINVIYNNFVI
>NZ_CP028103.1|WP_005948330.1|2664836_2665856_+|aspartate-semialdehyde-dehydrogenase
MRKYNVGILGATGAVGKEMLKVLEERNFPVENIRLFASSRSVGKKMLFKGKEYEIEEAKKGIYKGIDILLGAVENEQAKEFIPSAIENGAIVIDNSSAYRMADDVPLIVPEVNPEAVETHKGLIANPNCATIIGLVAVNELNKYSEVERMIVSTYQAVSGAGSGGISELDAEIKAIAEGKGFAMKIFPYQIAYNLIPQIGGFDEKGYSSEEMKFQNEGRKILNNPKLKVNCTCIRVPVYRSHSESITIEFKDRIDAEKAREILSKAEGVKLVDDPQNKKYPMPLDTSDQDLVYVGRIREDISNDEGKGLTLWCCGDQVRKGAATNAVQIAELLIKKEMI
>NZ_CP028103.1|WP_005948331.1|2666075_2667158_+|HDOD-domain-containing-protein
MALEKIVMLGDSIIDWNHSSKYINYGHAGFKTRDVLWLLEEKSEIKGDIGILLVGVNDILCGFKEEYTLEYYNKTVELLKQRFKKLILLSMLPSDTPRINIKSKMLNIKLKNLYNEDFFDIYNLFLDGGELLADKYTVDGIHLNNDGYDIFNKALNEIVEKVKHKGKGYPDRETAERELEEAGKLNPGQWITHSKYAALACEKIAECCPHMDSEKAYVVGLLHDIGRRVGIVQERHMLEGYKYCMSKGWKEVAQICITHSFMLKDITTSIGKWDISKEDYEFMKRFIEDVVYDDYDKLVQMCDSLALPSGFCFLEKRFVDVAMRYGVNEYTTKRWGAIYDIKKYFEKIAGKSIEEILEIS
>NZ_CP028103.1|WP_005948332.1|2667348_2670402_-|efflux-RND-transporter-permease-subunit
MNIIDYSIKNRTVTLFLTFVIIVGGIFSYMKLGKLEDPEFRVKEAIVVTLYPGADPHQVELQVTDEIESALQQIENVEYIESVSKAGYSEVKIKLNEALKAEVIDQYWDNVRKKINDAQKNLPSGVIPSIVLDDYGDVYGMFFAVTSEGYSKEELNRYVKYIKRELHSIPGVSKTTIYGKVDSAVEVVIDREKINALGINEKLILASFISQNLPAYSNSIEHGDMKIRVDINEAFNSLEDIENLVVFSKDNLRGGEETVLLKDIAVVKKSFSTPVKSKMRYNMKDAMGLMLSPEVGTNVIDTGKAIDKKLNEIKKNLPVGIEIEKVYYQPELVTNAIGQFVNNLVASVVVVVGVLLFTMGMRSGLIIGSGLILSILGTLIYMLAVKMDMQRVSLGSFIIAMGMLVDNAIVVVDGTLTSLEKGENRYDALTKPVKKTAVPLLGATAIAVIAFLPMYLMPTDAGEYISTLFWIMAVSLGLSWVLALTQIPVFCDIFLKLDKEKDKNGRKEKFYDLCHKFLEKVLTHKFLSLGIIIGAFLFSMLLFTRLPITFFPDSDKKGFVVNLWLPEGTSLEKTDKISQIVEKELLKDKDIINVTAAVGSSPSRYYVATIPELQNNSFSQLIISVNKLESVNRIGENIKKFVRENIPDTKIEVRKYVNGIPTKYPVEVRILGPDPYVLRELSKKVMNIMRTIPNAENIQTDWKNKVLIWSPVLSQNIERKNLISPLDVANSLNRATEGMTLGKYKEGTEIMPIVLREKSGGQQLEINNIGQTPVWGLGIKSLPLNRVIEKESLKWEDPEIWRRNRIRAIKVQCDISGGVTAESIRKAVEKEVNKLSLPDNYKIEWGGEYYEQNKNVAAVFSTLPLQGTIMFTICVFLFATLKDPLIIFAILPLSFIGIAPGLFLTGRSFGFMSIIGAISLSGMMIKNSIVLIDEIKYEINVDKKDPYTAIIDSAISRIRPVSMASVTTIFGMLPLIFDPLYGDMAITIVFGLTASTMLTLFVVPLLYSLLYKIEKQQ

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Crispr_ID: NZ_CP028103_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028103_10

2896356-2897606

Orphan

Consensus_repeat	Method
CTTGAATAGTAACTTGGAAGTTTTTAAAT	PILER-CR
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CRISPRCasFinder
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CRT

19 spacers

The CRISPR arrays of NZ_CP028103_10

>merge|NZ_CP028103|10|2896356-2897606|PILER-CR,CRISPRCasFinder,CRT
CTTGAATAGTAACTTGGAAGTTTTTAAATTGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTATCTTGAATAGTAACTTGGAAGTTTTTAAATTATAGTCCACAGAATTAAAAATCATTTCGTTAATGTCTTGAATAGTAACTTGGAAGTTTTTAAATGGTGTAAAAATAATTTTTAAAGGAGATAATAAATGACTTGAATAGTAACTTGGAAGTTTTTAAATATATAGCTCACTTAAATCAGTTGCTATACTTAACTCTTGAATAGTAACTTGGAAGTTTTTAAATAGTTTCTCATACTTATCTCTTAATATATTGCCTGCTTGAATAGTAACTTGGAAGTTTTTAAATCAGTAGTATAACTATATTCATAAATACATTCATACTTGAATAGTAACTTGGAAGTTTTTAAATATTAAAAGAAATTCTAAAATTGAATCTAACACTGCTCTTGAATAGTAACTTGGAAGTTTTTAAATGACACAGGACTTAAAAGTATTAGAAAGACTAAGAAACTTGAATAGTAACTTGGAAGTTTTTAAATTATAAGTTAATTCAGTATCTCTTTTCTTGACCAATCTTGAATAGTAACTTGGAAGTTTTTAAATTCTACTGCTCCTGTCATACTGTAAAACGATAAATACTTGAATAGTAACTTGGAAGTTTTTAAATTTATATATATAATCCTTTAGGTCCTTTATATTTAGTCTTGAATAGTAACTTGGAAGTTTTTAAATACACTTTTAAGAACCTTTAACATTTCAGCATTTTCTCTTGAATAGTAACTTGGAAGTTTTTAAATTATAATAACTCCTTATATTTCAGCTTTTTTCGGAGTCTTGAATAGTAACTTGGAAGTTTTTAAATCATCTAAACCAGCTTAAAACTATAAGAGGTATTCCTCTTGAATAGTAACTTGGAAGTTTTTAAATATACAAAGTAGTATTTGAATAGAAATATTATATAACTTGAATAGTAACTTGGAAGTTTTTAAATGCAAATCCTACACATAAAAAAATGTGTAGGGTTTTCTTGAATAGTAACTTGGAAGTTTTTAAATAATAATTGAAAATGCAGATAATGGAAGAGATGTAGTCTTGAATAGTAACTTGGAAGTTTTTAAATACCTCTAGTTGATTCGATATATCAATTGCTCCAAATTGAATATCAACTGATAAGTTTTTAAATATACTTTTCCATCAAATTCTTTCTCAGCAGTAAGATTGAATCTCAACTCATAAGTTTTCTCCC

>NZ_CP028103|10|3|2896356-2897415|PILER-CR
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAGTCCACAGAATTAAAAATCATTTCGTTAATGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GGTGTAAAAATAATTTTTAAAGGAGATAATAAATGA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATATAGCTCACTTAAATCAGTTGCTATACTTAACT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	AGTTTCTCATACTTATCTCTTAATATATTGCCTG
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CAGTAGTATAACTATATTCATAAATACATTCATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATTAAAAGAAATTCTAAAATTGAATCTAACACTGCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GACACAGGACTTAAAAGTATTAGAAAGACTAAGAAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAAGTTAATTCAGTATCTCTTTTCTTGACCAAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TCTACTGCTCCTGTCATACTGTAAAACGATAAATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TTATATATATAATCCTTTAGGTCCTTTATATTTAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ACACTTTTAAGAACCTTTAACATTTCAGCATTTTCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAATAACTCCTTATATTTCAGCTTTTTTCGGAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CATCTAAACCAGCTTAAAACTATAAGAGGTATTCCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATACAAAGTAGTATTTGAATAGAAATATTATATAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GCAAATCCTACACATAAAAAAATGTGTAGGGTTTT
CTTGAATAGTAACTTGGAAGTTTTTAAAT

>NZ_CP028103|10|10|2896356-2897543|CRISPRCasFinder
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAGTCCACAGAATTAAAAATCATTTCGTTAATGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GGTGTAAAAATAATTTTTAAAGGAGATAATAAATGA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATATAGCTCACTTAAATCAGTTGCTATACTTAACT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	AGTTTCTCATACTTATCTCTTAATATATTGCCTG
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CAGTAGTATAACTATATTCATAAATACATTCATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATTAAAAGAAATTCTAAAATTGAATCTAACACTGCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GACACAGGACTTAAAAGTATTAGAAAGACTAAGAAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAAGTTAATTCAGTATCTCTTTTCTTGACCAAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TCTACTGCTCCTGTCATACTGTAAAACGATAAATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TTATATATATAATCCTTTAGGTCCTTTATATTTAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ACACTTTTAAGAACCTTTAACATTTCAGCATTTTCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAATAACTCCTTATATTTCAGCTTTTTTCGGAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CATCTAAACCAGCTTAAAACTATAAGAGGTATTCCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATACAAAGTAGTATTTGAATAGAAATATTATATAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GCAAATCCTACACATAAAAAAATGTGTAGGGTTTT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	AATAATTGAAAATGCAGATAATGGAAGAGATGTAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ACCTCTAGTTGATTCGATATATCAATTGCTCCAA
ATTGAATATCAACTGATAAGTTTTTAAAT

>NZ_CP028103|10|3|2896356-2897606|CRT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAGTCCACAGAATTAAAAATCATTTCGTTAATGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GGTGTAAAAATAATTTTTAAAGGAGATAATAAATGA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATATAGCTCACTTAAATCAGTTGCTATACTTAACT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	AGTTTCTCATACTTATCTCTTAATATATTGCCTG
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CAGTAGTATAACTATATTCATAAATACATTCATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATTAAAAGAAATTCTAAAATTGAATCTAACACTGCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GACACAGGACTTAAAAGTATTAGAAAGACTAAGAAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAAGTTAATTCAGTATCTCTTTTCTTGACCAAT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TCTACTGCTCCTGTCATACTGTAAAACGATAAATA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TTATATATATAATCCTTTAGGTCCTTTATATTTAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ACACTTTTAAGAACCTTTAACATTTCAGCATTTTCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	TATAATAACTCCTTATATTTCAGCTTTTTTCGGAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	CATCTAAACCAGCTTAAAACTATAAGAGGTATTCCT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ATACAAAGTAGTATTTGAATAGAAATATTATATAA
CTTGAATAGTAACTTGGAAGTTTTTAAAT	GCAAATCCTACACATAAAAAAATGTGTAGGGTTTT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	AATAATTGAAAATGCAGATAATGGAAGAGATGTAGT
CTTGAATAGTAACTTGGAAGTTTTTAAAT	ACCTCTAGTTGATTCGATATATCAATTGCTCCAA
ATTGAATATCAACTGATAAGTTTTTAAAT	ATACTTTTCCATCAAATTCTTTCTCAGCAGTAAG
ATTGAATCTCAACTCATAAGTTTTCTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028103.1\|WP_005950578.1\|2907334_2908243_-\|ATP-dependent-sacrificial-sulfur-transferase-LarE	unknown	unknown	gnl\|CDD\|238948
NZ_CP028103.1\|WP_005950613.1\|2889250_2890303_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP028103.1\|WP_005950601.1\|2894012_2895035_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
NZ_CP028103.1\|WP_005950595.1\|2898418_2898625_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950606.1\|2891236_2892301_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP028103.1\|WP_005950593.1\|2899190_2900522_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP028103.1\|WP_005950589.1\|2901436_2901907_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP028103.1\|WP_005950599.1\|2895191_2895917_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP028103.1\|WP_005950580.1\|2906339_2907332_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376649
NZ_CP028103.1\|WP_005950587.1\|2901890_2904134_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236637
NZ_CP028103.1\|WP_005950591.1\|2900642_2901437_+\|FAD-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224238
NZ_CP028103.1\|WP_005950617.1\|2887564_2888326_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP028103.1\|WP_005950608.1\|2890883_2891147_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950615.1\|2888489_2889137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950585.1\|2904821_2905550_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP028103.1\|WP_005950583.1\|2905567_2906347_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_CP028103.1\|WP_005950611.1\|2890350_2890707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950619.1\|2887304_2887556_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028103.1\|WP_005950604.1\|2892314_2893997_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP028103.1\|WP_005950576.1\|2908239_2909583_-\|nickel-pincer-cofactor-biosynthesis-protein-LarC	unknown	unknown	gnl\|CDD\|376691

Protein	Function_ID	Function_description	E-value
NZ_CP028103.1\|WP_005950578.1\|2907334_2908243_-\|ATP-dependent-sacrificial-sulfur-transferase-LarE	gnl\|CDD\|238948	cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.	3.78798e-88
NZ_CP028103.1\|WP_005950613.1\|2889250_2890303_+\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	9.08891e-126
NZ_CP028103.1\|WP_005950601.1\|2894012_2895035_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.26961e-152
NZ_CP028103.1\|WP_005950587.1\|2901890_2904134_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|236637	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.	0
NZ_CP028103.1\|WP_005950606.1\|2891236_2892301_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	6.79984e-153
NZ_CP028103.1\|WP_005950589.1\|2901436_2901907_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.87544e-46
NZ_CP028103.1\|WP_005950599.1\|2895191_2895917_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.17904e-81
NZ_CP028103.1\|WP_005950580.1\|2906339_2907332_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|376649	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region. This family of proteins forms part of the cobalt-transport complex in prokaryotes, CbiMNQO. CbiMNQO and NikMNQO are the most widespread groups of microbial transporters for cobalt and nickel ions and are unusual uptake systems as they consist of eg two transmembrane components (CbiM and CbiQ), a small membrane-bound component (CbiN) and an ATP-binding protein (CbiO) but no extracytoplasmic solute-binding protein. Similar components constitute the nickel transporters with some variability in the small membrane-bound component, either NikN or NikL, which are not similar to CbiN at the sequence level. CbiM is the substrate-specific component of the complex and is a seven-transmembrane protein. The CbiMNQO and NikMNQO systems form part of the coenzyme B12 biosynthesis pathway. The NikM protein is pfam10670.	6.37537e-51
NZ_CP028103.1\|WP_005950591.1\|2900642_2901437_+\|FAD-binding-domain-containing-protein	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.7718e-30
NZ_CP028103.1\|WP_005950617.1\|2887564_2888326_-\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.20894e-167
NZ_CP028103.1\|WP_005950585.1\|2904821_2905550_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	8.32361e-87
NZ_CP028103.1\|WP_005950583.1\|2905567_2906347_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	1.02868e-28
NZ_CP028103.1\|WP_005950593.1\|2899190_2900522_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	7.02622e-133
NZ_CP028103.1\|WP_005950604.1\|2892314_2893997_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	3.59341e-115
NZ_CP028103.1\|WP_005950576.1\|2908239_2909583_-\|nickel-pincer-cofactor-biosynthesis-protein-LarC	gnl\|CDD\|376691	pfam01969, DUF111, Protein of unknown function DUF111. This prokaryotic family has no known function.	0

>NZ_CP028103.1|WP_005950599.1|2895191_2895917_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MKPIIGITTFREMREKGEYNSINYGYAEAILAAGGLPVFIPIVPEGIAKEYLEDYRLDGIIFSGGADVAPRFYGEDPGLQIPGIDTKRDIMEFELLEEAVKRKIPVLGICRGHQLINVAFDGTLYQDIDTQVQSAMGHHPSHINRDELFHSVNIKKESVLHDIFGDEKIYVNSFHHQAVKKLGKGLKATAFSCEGIVEAFETVDMNERFVLGIQWHPENLVNRYNEFLGIFKLLVDRAKER
>NZ_CP028103.1|WP_005950601.1|2894012_2895035_-|ABC-transporter-substrate-binding-protein
MKKLSAIVITFLLSLTTTFAAGEKETEHLLIYAGLMEDHAIAAVKEFEKETGIKTEFVRMSSGETLARIRAEKDNMTASVWFGGPIDAFVAANEENLIEPYISPVAKDIPDKFKDPNGIWTGIYVGYLGFVGNKEVLKEIGAEMPKSWADLLKPEYKGEIVTAHPGSSGTAFTMLATIVQLKGEKDGMAYMQKLNEQVRQYTKSGTAPGRMVGLGETAVGITFLHDAIKYRKEGYEDIIISAPEEGTGFEIGGVAILKNGPDQVSAKKFVDWALSKKAQELGQTVGSFQFLTNQTANAPEDVKEIAGTKLIDYNFEWAGKNRKDLLDKFSTATKTTAPTK
>NZ_CP028103.1|WP_005950604.1|2892314_2893997_-|iron-ABC-transporter-permease
MSNLQLKINTELKNMKKVFNDPILFSTIVFILVILIMFILFPMYNILKESFTYKGEFSLIHYKNIKEMQENFIIILNTLKLGVVTSVISTAIGFFFAYGMTYVKIPFRKFFNSIAILPIVSPPFVIALSAILLLGRRGFITRNLLGIRNAEIYGFHGLVLVQVLTFFPVAYLMLVGLLQKIDPSVEEASRDLGASRWDVFRTITFPLMIPGLANAILVIFIQAIADFGNPMVIGGNFTTVAVQIYLQGIGNYDMGSATALAVVLILMSISIFVTQKYYISKKSYVTVTGKVSREREKISEKNITMPIFIIMAFLTFCVFLMYIMIPIGSFVKLWGVKYDFSLEHYKYVFALGMKPIWDTTFLSIISTPITGILAMIIAFLIVRRKFLGKGFIEFITMMAIAIPGTIVGLGYIITYNTKPFVLTGTATILIIAFIMRNMPIGIRSGIAALQQIDPSIEEAATVLGANSKKVFTSVTLPMIKPAFFSGLVYAFVRSMTLVSTIIFLVSAKYNLLTVAIMNQIDVGKIGVASAYCTILIIIVFFVIGIMTYILKKMGIDSISE
>NZ_CP028103.1|WP_005950606.1|2891236_2892301_-|ABC-transporter-ATP-binding-protein
MGAKRVKFENINKIFLTGDNRKVHAVADLNLDIKAGEFICLLGPSGCGKTTILRMLAGFEVPTEGHIYIGDENVERITPDKRDTAMVFQNYALFPHMNVYDNIAYGLKLQKLPKSEVDERVHRILKMMNMEDFAERVPSQMSGGQQQRVSLARALVMEPGVLLFDEPLSNLDAKLRIHMRDEIRKIQQQVGITSIYVTHDQAEAMGLADKIIIMKDGRIQQAGSPIEIYQNPVNEFVANFIGRANIFTGELVYKTDNKCTIDICGVRYEVPQKVTHNIGDEIKIVARPESIIISKNDFKGKVIKSMFMGAYHEYEVMFEGFKVEISVSNPKGKKTYALDSELDFSLDVESIHIL
>NZ_CP028103.1|WP_005950608.1|2890883_2891147_+|hypothetical-protein
MFRSLIVFALTFLLVIFGLEYIMPPFGTIMYLNPIEIVGSIAYSIAYVTGMHVKLSIFLAVASISIIPLFMVIIVNRICKKKKKRRF
>NZ_CP028103.1|WP_005950611.1|2890350_2890707_+|hypothetical-protein
MNINFKLGSTTGKAGILSIECQKLNIPYVVVVFRNVLNYPNSVQIFKLKSNPKNEASEIKAVEEICKIADKYAITLVMKLAIRNRKHLIETFSKFGFKTKKSWLGNCPELIREYSSLD
>NZ_CP028103.1|WP_005950613.1|2889250_2890303_+|DNA-polymerase-IV
MKKDRTILHYDMDAYYASIEIRDNPKLLNKPLVVGGSIVTTASYEARKFGIHSAMKVSDAKKLCPSLLVIPVNKEKYSEISKKIQGLVLRLTHKIEFIALDEGYIDISDIIDLYPSKEFFAKKFRERIKYHTGLTCSVGIGFNKLSAKMASNINKPHGQYIFLSPLDFSKYISDKNIGIIPGVGRKLSSLLAKDSIFKVKDIYPYSLSALCTSYGKSRGELLYSFSRGIDYREVEYKKPIHSIGNENTFKYPLNTELEIKREFDDLFEHSYKRLLKDDFISKTIILKIRFSSNETITRSKTLEIPTDSYEKLKKVSEDLLENIDLIDSIRLLGISFGNLTKKSVRQLAFF
>NZ_CP028103.1|WP_005950615.1|2888489_2889137_+|hypothetical-protein
MANLKNIINNLKLKDEVDEAVKESLEILSEFSNLKLNNLEKEIERNLISGAFENSNFKVPILNIITKHSGEIARILESEDIFIDNILIILKEIFKDNNAITEVIIKKITKELIKIFKEDSNETIFSLIVPEKSHIIRYDFAFYSKTLYSKKIREKIQNNFSYIIIKSLINTKALVFNDFFSLYSTLLNEYFDGDIEKIQNNLVEMKEIYSIILSE
>NZ_CP028103.1|WP_005950617.1|2887564_2888326_-|exodeoxyribonuclease-III
MKLISWNVNGLRAAVQKGFLDYFKNENADIFCIQETKLQEGQIELDLEGYHQYWNYAEKKGYSGTAIFTKKKPIEVSYGLGIEEHDKEGRVITLEYEDFYMITVYTPNSQEELARLDYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAGFSDEERAKFTELLENGFIDSFRHFYPEVTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEILGSDHCPVVLKLKKEF
>NZ_CP028103.1|WP_005950619.1|2887304_2887556_-|hypothetical-protein
MASENFAKFCEVWDREQPVPEDRYRFFEIMNCVMIFFLTPEDVKNINDFFRRNGSFDEKRPVHEEIVVDEIHYNGNYMIKIGE
>NZ_CP028103.1|WP_005950595.1|2898418_2898625_+|hypothetical-protein
MTLLKKFKDKKVHIILNTADKISFDGKIIDEFENFIEITTDYSQYANHQQHILNKNFILQIYEYKEEY
>NZ_CP028103.1|WP_005950593.1|2899190_2900522_+|purine-permease
MRNTSPYDLDGIPVLREAIPLGLQHILAMFVSNITPLIIVAGAMKMPSETKTFLIQCTMLVAGVNTLIQAYRIGPIGARLPIVVGTSFAFVPVALSIGSKYGYEGILGAALVGAIFEIFIGAIIKKIRRYFPPVVTGVIVLSIGLSLLPVGVSNFAGGVGSADFGSFPNLFIGMVVLITVIFFKQFTKGITSTGSIFVGTVVGFIVAFFMGKVDLTPVRNAAIISFPTPFTYGITFHADACLAMIMMFIVSAVETVGDMSGVTMGGANREVTDKELSGGILADGFGSALASVFSVLPTTSFSQNTGIVAMTGIMSRFVVGTGAAFLVAGAFFPKIGAILSIVPASVLGGSLVMIFAMISISGINLITKEPLVGRNAVILSVSLGLGYGLGSVPAALKYFPESIQLIFGGSGIVVSGSIAVILNIVLPLDEKIKKTLKTEKVSQ
>NZ_CP028103.1|WP_005950591.1|2900642_2901437_+|FAD-binding-domain-containing-protein
MFSFSKYFPAQSLQEAYDELLKNKKNIILGGTSYLRMENTSYNTAIDLSSLSLNYIKEEEKYIHIGAMVSFREIETNPIILNLFDGVLSKSVNNIIGVQFRNNVTVGATVFSKYGFSDLIPALLALDTTVILFNGGEISLEEYLSIEGKTRDILVEIKIRKTNGKGAFKSIRKSKTDYAITNTAVTNENGTFKIAIGVRPGKAKLAHKAMEILNNSDNITDEVIDRACSFIDEEITFGSNMRGSSEYRAAISKVITKRALKEVL
>NZ_CP028103.1|WP_005950589.1|2901436_2901907_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MLLTLTVNGLKRELLISEDEYLLDTLRKAGYLSVKRGCDTGSCGLCTVLVDDKPILSCSTLSARMNNKRITTIEGCQEEAMKFANFMADEGAEQCGYCAPGFTLTVLAMMKEYKNPTDEEILHYLNGNLCRCSGYVSQLRAIKNFMEAEKSNENSK
>NZ_CP028103.1|WP_005950587.1|2901890_2904134_+|molybdopterin-dependent-oxidoreductase
MKIVNKSIKKIDSIGIITGRPLYTDDLVINNNSLIVKLLRSPHPFAKILDIDTSIAKKVPGVEAIYTHHDVPKTMFTLAGQSYPEPSPYDRKILSEYVRYVGDPVAIVAAVDEKTAEKAMKLIKVKYEILEAVIDYEKALDSDILVHPEDIHINFPIGFDNKRNLASSYLETKGDVDRGFEESDVIIEKTYYTQPQIHAMMETYRTACYLDAHGRLVVVSSTQIPFHVRRHLARALEIPSSRIRVIKPKIGGGFGGKQTSVCEIYPAFVTMKTGKPSKIIYSRKETQAYSNTRHAMRLKVKIGSDNEGNIKAIDINVLSNTGAYGEHAPTVTSLVVYKTFPLYAKVPMRCKADIVYSNTMVGAAFRGYGATQGTFAVESAVNELAHKLGIDPTEIRMKNLVNQSEKVSGDIKKCISIGKEAFDWKNRTVKDMGNGKVRASGMAVTMQGSGIANVDTASATLKLHDSGDYTLYLGVTDMGQGCDTVLAQMASEILEVPVEKIIVNTADTDTSPYDPGAYASSGTYVTGNAVILAAEKMKKEIIDMASKLMKIPAEEVEYLGESVQDKNGNTLSLRDIGERAVSFEGKNQIITTATWGGETSPPPFIASFAEVEVDTLTGHTEVIDFLSVVDCGVPINPALAQVQVEGGIAQGIGLALYEDIQFDKNGKVKHDTLMQYKIPSRKDLGNIKVLFSYSNEPTGPFGAKSIGEVVINTASPAIADAIYNATKARVRSLPITSEKLFWEIHAK
>NZ_CP028103.1|WP_005950585.1|2904821_2905550_-|ABC-transporter-ATP-binding-protein
MQRIKIEHLNFSYRGFKEVLTDINLEISVGETIGIIGENGAGKSTLLKLIIGLLSDYSGKIEIDKVEVKKSTLSDIRKKIGYVFQDSDSQLFMSNVYDDIAFAPQNYGYSEEETERCVEKAMKTVKIEDLKNRMIYQLSGGQKKLVSLAAVLSIEPEIILLDEPSAALDPKNRRNLINILNSIKGIKVIASHDLDMILDTCDKTILISKGKIIKEGNTENILSDKNLLEENGLELPLSFRWK
>NZ_CP028103.1|WP_005950583.1|2905567_2906347_-|cobalt-ECF-transporter-T-component-CbiQ
MSKLNEAIHTIHYLDRMSLENKWINNIHPLVKLVVTFVYISVLISFNKYNLTGLAGMSIYIAVVFILGRISLRQSIKQLRGIIIILCIIGIANPFLDKKVLLDIGTVKITGGVISMATLIAKGVLSVLASYFLIATTSIENICYALRIIHIPKIFVTVVLLIYRYIILFLKEVERMTTAYELRAPNQKGIHIKVWGSMVGMLLLRSIDRAQTVYESMLLRGFDGEFKMKSSGESLLKSYIYCIFWVGAIIFFRLHQSDY
>NZ_CP028103.1|WP_005950580.1|2906339_2907332_-|energy-coupling-factor-ABC-transporter-permease
MHMADALITPTVAGAMYICSAAAAKYSMKKLSLENDPKKIPLMGIMGAFVFAAQMINFTIPGTGSSGHLCGGMLLSAVLGPYAGFLTMIGVLFIQCLLFADGGILAFGANVWNMAFYGCFIGAMIIWRYTMAKGITKKKIILASIIGSVVTLQLGAFSVTLETLASNITELPFAVFVSAMQPIHLAIGLVEGLITASVLCFIFEARPELLWESCEKEGKVSYKNTVIILAAVASVIGGLLSLMASSHPDGLEWSIEKIAGSPELQASGTAYDIAEKIQGATALLPDYSFKGSESMFGTSFSGIIGGIAVVVLCILSCYLFNFFRGKSKNE
>NZ_CP028103.1|WP_005950578.1|2907334_2908243_-|ATP-dependent-sacrificial-sulfur-transferase-LarE
MITKEAGRKEINAKETGIKEINTKETSTYKEKNIFLQNLMEKYTMENVAVAFSGGVDSSLLLKAACLSAVKNGKKVYAVTMHTTLHPMNEIESSKKTAEEIGAEHLIIKVDELREAGIENNPVERCYLCKKYLFQKILDKAESLGIKTVLDGTNEDDLHLFRPGLKALRELGIKSPLAESGFTKSDVRKLAEEYGLSVSKKPSTPCLATRFPYGSRLTYEEMQKVEKGENFLKNLGLYNVRLRIHGDIARIETDKEDIEKIVKYREKTISYLKKLGYRYITIDLEGFRSGSMDYFLENKREE
>NZ_CP028103.1|WP_005950576.1|2908239_2909583_-|nickel-pincer-cofactor-biosynthesis-protein-LarC
MKNTLYLECYSGISGDMTVAALLDLGADREVLEKALKTLPVEGFEIKISRVKKSGLDVCDFSVILDKEHENHDHDMEYLHGSHKHGEEEHTHEEDEAHQHSHIHLHEKSHDHGHVHLHEHSHHHEHRNLSGILHIISHADITPRAKEIAERIFTILAEAEAKAHGTELDKVHFHEVGAVDSIVDIVAVAVCLDNLNITDVIATELCEGHGFVRCQHGIIPVPVPAVVNIAEKHKLSLRITDTEGELVTPTGAAIIAAVRSMDKLPKKFSIEKIGIGAGKRNYDRPSLLRAMLIKDKTFEDNQIYKLESNIDDCTGEMLGYVMELLFKAGARDVHYIPVYMKKNRPAYQLNVVCLEKDIEILENIIFEETTTIGIRRIPVERSVLKRRIEKIMTSLGEAEVKICLLKEKEKVYPEYESVKKLCLQHKLNFQEVYQLIQREYNETKEQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP028103_8	8.1\|2643879\|37\|NZ_CP028103\|CRISPRCasFinder,CRT	2643879-2643915	37	NZ_CP028103.1	737660-737696	0	1.0

1. spacer 8.1|2643879|37|NZ_CP028103|CRISPRCasFinder,CRT matches to position: 737660-737696, mismatch: 0, identity: 1.0

tggttctggtataaacttagtaagacagtttaataat	CRISPR spacer
tggttctggtataaacttagtaagacagtttaataat	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	24919-24953	6	0.829
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	240099-240133	6	0.829
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	198954-198988	6	0.829
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	24919-24953	6	0.829
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	240099-240133	6	0.829
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	198954-198988	6	0.829
NZ_CP028103_9	9.8\|2654250\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654250-2654285	36	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	128516-128551	7	0.806
NZ_CP028103_9	9.22\|2655157\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2655157-2655192	36	NZ_CP033913	Chryseobacterium shandongense strain H5143 plasmid unnamed, complete sequence	65987-66022	7	0.806
NZ_CP028103_9	9.22\|2655157\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2655157-2655192	36	NZ_CP033916	Chryseobacterium shandongense strain G0207 plasmid unnamed, complete sequence	7065-7100	7	0.806
NZ_CP028103_10	10.9\|2896900\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2896900-2896934	35	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	107903-107937	7	0.8
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	8192-8226	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	11783-11817	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	121421-121455	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP013198	Spiroplasma citri strain R8-A2 plasmid pSCI26, complete sequence	4895-4929	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP046373	Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence	11563-11597	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP047438	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence	45466-45500	8	0.771
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP047444	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7	46829-46863	8	0.771
NZ_CP028103_10	10.7\|2896770\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2896770-2896805	36	NC_015715	Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence	35028-35063	8	0.778
NZ_CP028103_9	9.22\|2655157\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2655157-2655192	36	LN835295	Clostridium perfringens plasmid pJIR4150, complete sequence, strain JIR12708	18133-18168	9	0.75
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	CP041516	Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence	43118-43152	10	0.714
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	10968-11002	10	0.714
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	CP041516	Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence	43118-43152	10	0.714
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	10968-11002	10	0.714
NZ_CP028103_9	9.13\|2654576\|36\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654576-2654611	36	NZ_CP012423	Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence	10729-10764	10	0.722
NZ_CP028103_10	10.19\|2897544\|34\|NZ_CP028103\|CRT	2897544-2897577	34	MN693020	Marine virus AFVG_117M64, complete genome	3760-3793	10	0.706
NZ_CP028103_10	10.19\|2897544\|34\|NZ_CP028103\|CRT	2897544-2897577	34	MN693056	Marine virus AFVG_25M10, complete genome	56004-56037	10	0.706
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	216591-216625	11	0.686
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	MN693596	Marine virus AFVG_25M324, complete genome	13769-13803	11	0.686
NZ_CP028103_8	8.5\|2644141\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644141-2644175	35	MK893987	Staphylococcus phage PMBT8, complete genome	61416-61450	11	0.686
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	216591-216625	11	0.686
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	MN693596	Marine virus AFVG_25M324, complete genome	13769-13803	11	0.686
NZ_CP028103_8	8.6\|2644205\|35\|NZ_CP028103\|CRISPRCasFinder,CRT,PILER-CR	2644205-2644239	35	MK893987	Staphylococcus phage PMBT8, complete genome	61416-61450	11	0.686
NZ_CP028103_9	9.17\|2654834\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2654834-2654868	35	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	400146-400180	11	0.686
NZ_CP028103_10	10.9\|2896900\|35\|NZ_CP028103\|PILER-CR,CRISPRCasFinder,CRT	2896900-2896934	35	MK504446	Lactobacillus phage SAC12B, complete genome	47064-47098	11	0.686
NZ_CP028103_10	10.19\|2897544\|34\|NZ_CP028103\|CRT	2897544-2897577	34	MN693220	Marine virus AFVG_25M60, complete genome	54656-54689	11	0.676
NZ_CP028103_8	8.3\|2644010\|37\|NZ_CP028103\|CRISPRCasFinder,CRT	2644010-2644046	37	NZ_CP010354	Acinetobacter johnsonii XBB1 plasmid pXBB1-3, complete sequence	5945-5981	12	0.676

1. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

2. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

3. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

4. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

5. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

6. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 6, identity: 0.829

tctaataaaagtgaaaaaatagatgaat-tgtttct	CRISPR spacer
gctaattaaaatgaaaaaatagatgaatgtatatc-	Protospacer
 ***** ***.***************** *.* **

7. spacer 9.8|2654250|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 7, identity: 0.806

tgaaatttaaagtaaaaattaaagaaactcaattag	CRISPR spacer
acaagagtaaattaaacattaaagaaactcaattag	Protospacer
  **.  **** **** *******************

8. spacer 9.22|2655157|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033913 (Chryseobacterium shandongense strain H5143 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

-aaaagtattattttttctaacttcatttttcaaatt	CRISPR spacer
ttaaagca-tattttttctaactacagttttcaaaaa	Protospacer
  ****.* ************** ** ********

9. spacer 9.22|2655157|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033916 (Chryseobacterium shandongense strain G0207 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

-aaaagtattattttttctaacttcatttttcaaatt	CRISPR spacer
ttaaagca-tattttttctaactacagttttcaaaaa	Protospacer
  ****.* ************** ** ********

10. spacer 10.9|2896900|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 7, identity: 0.8

tataagttaattcagtatctcttttcttgaccaat	CRISPR spacer
aataagttaattaagtttctcttttcttttcttat	Protospacer
 *********** *** ***********  *. **

11. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

12. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

13. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

14. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013198 (Spiroplasma citri strain R8-A2 plasmid pSCI26, complete sequence) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

15. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046373 (Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

16. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047438 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

17. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047444 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7) position: , mismatch: 8, identity: 0.771

---ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
caaatttg---ctttaattttaaaaatgaaattaattt	Protospacer
    ***.   *.****.********** *********

18. spacer 10.7|2896770|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NC_015715 (Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence) position: , mismatch: 8, identity: 0.778

attaaaagaaattctaaaattgaatctaacactgct	CRISPR spacer
tttaaaaaaaattcaaaaattgaatctaaaagaatt	Protospacer
 ******.****** ************** *  ..*

19. spacer 9.22|2655157|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to LN835295 (Clostridium perfringens plasmid pJIR4150, complete sequence, strain JIR12708) position: , mismatch: 9, identity: 0.75

aaaagtattattttttctaacttcatttttcaaatt---	CRISPR spacer
ttcagtattattttttataactttattttc---atttga	Protospacer
   ************* ******.*****.   ***

20. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tctcataaaagtgaaaaagtagatggtttagaaaa	Protospacer
*** **************.******. **.

21. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 10, identity: 0.714

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tctcataaaagtgaaaaagtagatggtttagaaaa	Protospacer
*** **************.******. **.

22. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tctcataaaagtgaaaaagtagatggtttagaaaa	Protospacer
*** **************.******. **.

23. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 10, identity: 0.714

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tctcataaaagtgaaaaagtagatggtttagaaaa	Protospacer
*** **************.******. **.

24. spacer 9.13|2654576|36|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012423 (Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence) position: , mismatch: 10, identity: 0.722

aaaaggagaaataaagctaagaaaaaaaagaacaga	CRISPR spacer
caaaggagaaataaagatatgaaaaaactatttagt	Protospacer
 *************** ** *******  .  .**

25. spacer 10.19|2897544|34|NZ_CP028103|CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 10, identity: 0.706

atacttttccatcaaattctttctcagcagtaag	CRISPR spacer
atttcattctatcaaattctttctcagtagccca	Protospacer
** .. ***.*****************.**.  .

26. spacer 10.19|2897544|34|NZ_CP028103|CRT matches to MN693056 (Marine virus AFVG_25M10, complete genome) position: , mismatch: 10, identity: 0.706

atacttttccatcaaattctttctcagcagtaag	CRISPR spacer
atttcattctatcaaattctttctcagtagccca	Protospacer
** .. ***.*****************.**.  .

27. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 11, identity: 0.686

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tataagaaaagtgaaaaactagatgaaaaagaaac	Protospacer
* *** ************ ********  .    .

28. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to MN693596 (Marine virus AFVG_25M324, complete genome) position: , mismatch: 11, identity: 0.686

--tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
agaccgccaaga--gaaaaaatagatgaatggtttaa	Protospacer
   *.. .**.*  **************** ****

29. spacer 8.5|2644141|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to MK893987 (Staphylococcus phage PMBT8, complete genome) position: , mismatch: 11, identity: 0.686

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
aataataaaaatgaaaaaatagataaacgaaaatt	Protospacer
  ********.*************.**. .   .*

30. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 11, identity: 0.686

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
tataagaaaagtgaaaaactagatgaaaaagaaac	Protospacer
* *** ************ ********  .    .

31. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to MN693596 (Marine virus AFVG_25M324, complete genome) position: , mismatch: 11, identity: 0.686

--tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
agaccgccaaga--gaaaaaatagatgaatggtttaa	Protospacer
   *.. .**.*  **************** ****

32. spacer 8.6|2644205|35|NZ_CP028103|CRISPRCasFinder,CRT,PILER-CR matches to MK893987 (Staphylococcus phage PMBT8, complete genome) position: , mismatch: 11, identity: 0.686

tctaataaaagtgaaaaaatagatgaattgtttct	CRISPR spacer
aataataaaaatgaaaaaatagataaacgaaaatt	Protospacer
  ********.*************.**. .   .*

33. spacer 9.17|2654834|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 11, identity: 0.686

ttttacccccttaactttaaaaatgcaattaattt	CRISPR spacer
ataataaaaattaattttaaaaatgcaattaaatt	Protospacer
 *        ****.***************** **

34. spacer 10.9|2896900|35|NZ_CP028103|PILER-CR,CRISPRCasFinder,CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 11, identity: 0.686

tataagttaattcagtatctcttttcttgaccaat	CRISPR spacer
cataagttaattcagcatctgttttctctttattc	Protospacer
.**************.**** ******.  .   .

35. spacer 10.19|2897544|34|NZ_CP028103|CRT matches to MN693220 (Marine virus AFVG_25M60, complete genome) position: , mismatch: 11, identity: 0.676

atacttttccatcaaattctttctcagcagtaag	CRISPR spacer
gtttcattctatcaaattctttctcagtagccca	Protospacer
.* .. ***.*****************.**.  .

36. spacer 8.3|2644010|37|NZ_CP028103|CRISPRCasFinder,CRT matches to NZ_CP010354 (Acinetobacter johnsonii XBB1 plasmid pXBB1-3, complete sequence) position: , mismatch: 12, identity: 0.676

taaaaaagcttcttttaaaagctcttgttgttttcct	CRISPR spacer
tgctttggcttcttttaaaagtttttgttgtttcaac	Protospacer
*.    .**************.*.*********.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

673548 : 681314

Staphylococcus_phage(57.14%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005949088.1\|673548_674262_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	7.4e-32	45.7
WP_005949086.1\|674275_675217_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	8.6e-12	33.1
WP_005949084.1\|675331_676525_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.2e-116	54.2
WP_039995735.1\|676542_677190_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.8e-32	38.1
WP_005949080.1\|677207_678269_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-50	34.7
WP_005949078.1\|678286_678748_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	55.7
WP_005949075.1\|679131_680463_+	MATE family efflux transporter	NA	NA	NA	NA
WP_005949073.1\|680480_681314_+	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.0e-19	54.3

DBSCAN-SWA_2

745888 : 783951

Clostridium_phage(45.16%)

integrase,plate,holin,terminase,tail,capsid,portal

attL 740795:740811|attR 777932:777948

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
740795:740811	attL	NA	NA	NA	NA
WP_005948972.1\|745888_746329_-\|holin	phage holin family protein	A0A0E3Y658	Fusobacterium_phage	5.2e-28	55.5
WP_005948970.1\|746344_746833_-	hypothetical protein	NA	NA	NA	NA
WP_005948968.1\|746847_747270_-	hypothetical protein	NA	NA	NA	NA
WP_005948965.1\|747314_747842_-	hypothetical protein	NA	NA	NA	NA
WP_005948964.1\|748113_749073_-\|integrase	site-specific integrase	A0A0E3U2P3	Fusobacterium_phage	1.2e-74	45.3
WP_147376441.1\|749168_749456_+	hypothetical protein	NA	NA	NA	NA
WP_107123200.1\|749472_750471_-	hypothetical protein	NA	NA	NA	NA
WP_005948958.1\|750460_751102_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_005948957.1\|751088_752168_-\|plate	baseplate J/gp47 family protein	X5JAB8	Clostridium_phage	3.6e-78	46.1
WP_005948956.1\|752160_752586_-	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	1.5e-24	49.2
WP_005948955.1\|752582_753023_-	DUF2577 domain-containing protein	S5MC71	Brevibacillus_phage	5.1e-07	31.1
WP_039995727.1\|753015_753975_-	hypothetical protein	H7BVH4	unidentified_phage	4.6e-77	48.7
WP_005948953.1\|753994_754651_-	LysM peptidoglycan-binding domain-containing protein	A0A0A8WFE5	Clostridium_phage	3.1e-32	40.7
WP_005948952.1\|754653_756774_-	tape measure protein	X5JAB7	Clostridium_phage	3.6e-66	29.9
WP_005948951.1\|756971_757382_-	phage protein	Q708L8	Streptococcus_phage	1.3e-09	35.2
WP_005948950.1\|757394_757871_-\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	2.1e-43	56.5
WP_107123201.1\|757888_759202_-\|tail	phage tail sheath subtilisin-like domain-containing protein	X5JAJ1	Clostridium_phage	1.7e-130	52.2
WP_005948949.1\|759202_759388_-	hypothetical protein	NA	NA	NA	NA
WP_005948948.1\|759400_759841_-	hypothetical protein	NA	NA	NA	NA
WP_005948947.1\|759837_760386_-	HK97 gp10 family phage protein	A0A0A7RTT0	Clostridium_phage	9.8e-24	36.8
WP_005948946.1\|760385_760769_-	hypothetical protein	A0A0A7RTV0	Clostridium_phage	1.2e-15	41.5
WP_005948945.1\|760765_761167_-	hypothetical protein	NA	NA	NA	NA
WP_005948944.1\|761176_761545_-	hypothetical protein	NA	NA	NA	NA
WP_005948941.1\|761558_762512_-	hypothetical protein	A0A1J0MCK3	Streptomyces_phage	2.6e-80	52.4
WP_005948939.1\|762525_763119_-	phage scaffolding protein	Q5YA71	Bacillus_phage	4.9e-05	47.9
WP_005948933.1\|763385_763649_-	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	1.4e-28	66.7
WP_005948930.1\|763704_763890_-	hypothetical protein	NA	NA	NA	NA
WP_005948927.1\|763886_765620_-\|capsid	minor capsid protein	A0A0A8WIE7	Clostridium_phage	3.3e-110	56.4
WP_005948925.1\|765603_767037_-\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	1.4e-82	38.8
WP_005948922.1\|767055_768462_-\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	1.1e-193	73.5
WP_005948920.1\|768448_768970_-\|terminase	terminase small subunit	A0A0A0RSW5	Bacillus_phage	1.8e-19	34.2
WP_005948917.1\|769036_769846_-	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	7.4e-36	38.4
WP_005948915.1\|769990_770416_-	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_005948912.1\|770431_771115_-	hypothetical protein	NA	NA	NA	NA
WP_005948909.1\|771117_772491_-	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	1.1e-145	55.4
WP_005948907.1\|772506_772800_-	VRR-NUC domain-containing protein	Q3LZN4	Bacteriophage	8.0e-17	56.2
WP_005948904.1\|773152_775546_-	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	6.5e-205	46.5
WP_005948902.1\|775563_775836_-	hypothetical protein	A0A0A7RWV6	Clostridium_phage	1.7e-21	54.4
WP_005948899.1\|775846_777820_-	DNA polymerase	H7BVQ1	unidentified_phage	2.4e-221	58.4
WP_107123291.1\|778000_778570_-	DUF2815 family protein	W8CPL2	Croceibacter_phage	4.7e-37	45.8
777932:777948	attR	NA	NA	NA	NA
WP_005948894.1\|778579_779737_-	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	3.9e-99	48.7
WP_005948892.1\|779736_780138_-	hypothetical protein	NA	NA	NA	NA
WP_005948889.1\|780150_780408_-	hypothetical protein	NA	NA	NA	NA
WP_005948887.1\|780408_780588_-	hypothetical protein	NA	NA	NA	NA
WP_005948884.1\|780677_780878_-	hypothetical protein	A0A0S2MV91	Bacillus_phage	2.3e-07	60.5
WP_005948881.1\|780890_781055_-	hypothetical protein	NA	NA	NA	NA
WP_005948878.1\|781065_781464_-	hypothetical protein	NA	NA	NA	NA
WP_005948876.1\|781485_781770_-	hypothetical protein	NA	NA	NA	NA
WP_005948875.1\|781787_782105_-	hypothetical protein	NA	NA	NA	NA
WP_005948873.1\|782104_782329_-	hypothetical protein	NA	NA	NA	NA
WP_005948870.1\|782344_782695_-	hypothetical protein	NA	NA	NA	NA
WP_005948866.1\|782884_783109_-	hypothetical protein	NA	NA	NA	NA
WP_005948863.1\|783159_783372_-	helix-turn-helix transcriptional regulator	A0A1W6JNS4	Staphylococcus_phage	1.3e-05	40.0
WP_005948861.1\|783516_783951_+	helix-turn-helix transcriptional regulator	A0A0S2SXM8	Bacillus_phage	4.6e-08	31.1

DBSCAN-SWA_3

2813359 : 2819118

Prochlorococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_187073964.1\|2813359_2814865_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.2e-69	48.3
WP_005948513.1\|2814878_2815454_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	4.3e-22	39.1
WP_005948514.1\|2815441_2816443_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	1.9e-65	44.2
WP_005948515.1\|2816464_2817862_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.3e-60	35.0
WP_005948516.1\|2817861_2818578_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	3.6e-42	44.1
WP_005948519.1\|2818638_2819118_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	9.7e-28	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028103

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection