CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028105	Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome	9 crisprs	cas13c,WYL,cas3,csm6,DEDDh,DinG,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6	3	26	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028105_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_1

218639-218866

Orphan

Consensus_repeat	Method
ATTTAAAAACTTATCAAGTTACTAGTCAAT	CRISPRCasFinder
ATTTAAAAACTTATCAAGTTACTAGTCAATNTN	CRT
TTAATTTAAAAACTTATCAAGTTACTAGTCAATT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP028105_1

>merge|NZ_CP028105|1|218639-218866|CRISPRCasFinder,CRT,PILER-CR
TTTTAAAAAACTTATAAGTTACTAGTCAATCTTAAAATTTATAAAATACCATTAAATAAACCTGTATTTAAAAACTTATCAAGTTACTAGTCAATTTTGTATTAGCTAACAGATGGGGAAGAGCAGCATTTGATTTAAAAACTTATCAAGTTACTAGTCAATTTATCTACTGCTTTTATCTTTTCAGCACCACTTAATTTAAAAACTTATCAAGTTACTAGTCAATAT

>NZ_CP028105|1|1|218639-218864|CRISPRCasFinder
TTTTAAAAAACTTATAAGTTACTAGTCAAT	CTTAAAATTTATAAAATACCATTAAATAAACCTGT
ATTTAAAAACTTATCAAGTTACTAGTCAAT	TTTGTATTAGCTAACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAAT	TTATCTACTGCTTTTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAAT

>NZ_CP028105|1|1|218640-218866|CRT
TTTAAAAAACTTATAAGTTACTAGTCAATCTT	AAAATTTATAAAATACCATTAAATAAACCTGT
ATTTAAAAACTTATCAAGTTACTAGTCAATTT	TGTATTAGCTAACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAATTT	ATCTACTGCTTTTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAATAT

>NZ_CP028105|1|1|218704-218865|PILER-CR
ATTTAAAAACTTATCAAGTTACTAGTCAATTTTG	TATTAGCTAACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAATTTAT	CTACTGCTTTTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005981785.1\|220412_220790_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|227783
NZ_CP028105.1\|WP_005981771.1\|228196_229303_+\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NZ_CP028105.1\|WP_005981775.1\|223504_223843_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981769.1\|229448_230177_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP028105.1\|WP_147385051.1\|209948_211775_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP028105.1\|WP_035959974.1\|219084_220335_-\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|225142
NZ_CP028105.1\|WP_005981781.1\|221133_221766_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|153431
NZ_CP028105.1\|WP_005981783.1\|220853_221111_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981789.1\|215419_218002_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP028105.1\|WP_005981779.1\|221781_222606_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197338
NZ_CP028105.1\|WP_040490918.1\|204499_206044_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP028105.1\|WP_005981814.1\|206161_207046_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP028105.1\|WP_005981791.1\|213950_215153_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP028105.1\|WP_005981795.1\|212111_213071_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP028105.1\|WP_005981773.1\|223901_228131_+\|2-hydroxyacyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|224835
NZ_CP028105.1\|WP_005981793.1\|213087_213951_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226644
NZ_CP028105.1\|WP_005981799.1\|208839_209763_+\|multidrug-resistance-efflux-transporter-family-protein	unknown	unknown	gnl\|CDD\|379245
NZ_CP028105.1\|WP_005981801.1\|207506_208820_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP028105.1\|WP_005981803.1\|207055_207421_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|226131
NZ_CP028105.1\|WP_005981777.1\|222761_223478_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005981785.1\|220412_220790_-\|thioesterase-family-protein	gnl\|CDD\|227783	COG5496, COG5496, Predicted thioesterase [General function prediction only].	2.49433e-40
NZ_CP028105.1\|WP_005981771.1\|228196_229303_+\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	1.0601e-127
NZ_CP028105.1\|WP_005981769.1\|229448_230177_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.12866e-68
NZ_CP028105.1\|WP_147385051.1\|209948_211775_-\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP028105.1\|WP_035959974.1\|219084_220335_-\|uracil-xanthine-permease	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	2.6801e-111
NZ_CP028105.1\|WP_005981781.1\|221133_221766_-\|thiamine-diphosphokinase	gnl\|CDD\|153431	cd07995, TPK, Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.	8.40275e-67
NZ_CP028105.1\|WP_005981789.1\|215419_218002_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	3.3608e-154
NZ_CP028105.1\|WP_005981779.1\|221781_222606_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	2.0538e-46
NZ_CP028105.1\|WP_040490918.1\|204499_206044_+\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP028105.1\|WP_005981814.1\|206161_207046_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	3.03157e-08
NZ_CP028105.1\|WP_005981791.1\|213950_215153_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	1.83681e-159
NZ_CP028105.1\|WP_005981795.1\|212111_213071_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.2881e-124
NZ_CP028105.1\|WP_005981773.1\|223901_228131_+\|2-hydroxyacyl-CoA-dehydratase	gnl\|CDD\|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	1.69385e-140
NZ_CP028105.1\|WP_005981793.1\|213087_213951_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	3.91253e-103
NZ_CP028105.1\|WP_005981799.1\|208839_209763_+\|multidrug-resistance-efflux-transporter-family-protein	gnl\|CDD\|379245	pfam13536, EmrE, Putative multidrug resistance efflux transporter. This is a membrane protein family whose members are purported to be related to the DMT or Drug/Metabolite Transporter (DMT) Superfamily. Members are all uncharacterized.	5.03483e-124
NZ_CP028105.1\|WP_005981801.1\|207506_208820_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.51672e-126
NZ_CP028105.1\|WP_005981803.1\|207055_207421_+\|ACT-domain-containing-protein	gnl\|CDD\|226131	COG3603, COG3603, Uncharacterized conserved protein [Function unknown].	1.60931e-31
NZ_CP028105.1\|WP_005981777.1\|222761_223478_+\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.65925e-49

>NZ_CP028105.1|WP_005981789.1|215419_218002_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKKRIFWGQLIAALLYIGNTTFSQTIWTDADFTTPKGHTWVNSGNWDYGGDVHIQNVNEVIFESNMSGKPGTGVLSIETGGKLTADGMVIVNQLGPTTGDAVLVTDGGKAYFNGGLTANIMNSNNDYYAIGVIRGNSQLHVKGDTNINANFEKGYGLYLGEGTTNSFSKNDSGNGSVNIYAGKIGIYSLGNTDFNQDVNISLNSNGATGIISNTTNTLSTTNFNGFVTVENNSISDNTSTAYGVAVSNANGILNLNAGGKIVFGDNYTNGNEIGIYANKGIINITGDLTVQSNSGGIQAVFYTTNGGRITAVDSVMDLKGNMYANNSSEITVAMNSGSLWEGASYIGNGSTVDIKMTGSKWKMTEDSTVTNLDILSGTTVYLNAAPDYSNFIGRTLTITENYHGNGGTIVFNTQLEDDNSVTDKMIVEGDTSGTTKVRVNNMGGQGAHTENGIELISILGISDGEFVKDGRIVAGAYEYFLNRGDGITTDSNNWYLTSTIPSIIPPPVTPPDTEDPIDPEILDPPLGPELPNVIEPIYRPESGSYLANARAVNSLFVHTLHDRLGETQYTDALKNGEQVSSIWVRNVGGYGTFRDGSNQLKTRNKKNVIQVGGDIADWSSNENNRYHLGIMAGYGFNHSKTESNKTSYTSKGETEGFNLGVYGTYYANENDKSGFYADTWLTYSWFDNEVRGDELEKEKYKSQGITASLESGYSFKIKSDDSDRKTYYIQPKAQIIYMGVDTDDHTEANGTKVETKGDGNIQTRIGARVYVNHFNPADRDNSKEIQPFVEANWIHNSKDVNVSMDDINNKIKGTKDIGEVKVGTEVKLNPSFNVWGNVSHQWGGSGYRDTKVTIGIKYSF
>NZ_CP028105.1|WP_005981791.1|213950_215153_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MSKNIENDAHDEKYILSVKNLTKLYGLNKNEAVKMLKAGAEKSEVFKKTGVTSAIWDMSFDVKQGEIFVIIGLSGSGKSTVIRCLNRLHNPTSGNILFDGKEISKFSQKELIDFRRNKISMVFQNFGLMSHRDVISNIEYGLEIKGISKEEREKKAMEVLKMVGLEGLEHESINSLSGGMKQRVGIARALANDPEILLMDEPFSALDPLVRSDMQFELLSIQKKLKKTIIFITHDINEAFKLGDKVAIMKDSRLIQLDTPENMSANPADDYVRQFIDSADKTKVISVKQIMFNPSCIIRLKEGAGIAIREMKSNRVSSAYVIDNHMKFLGIITIDSALKCRNENGFLSDYIIGEIPTTSSDTLINDILPIAVNTKFPIAVIDDGELMGIVSKASILSTLI
>NZ_CP028105.1|WP_005981793.1|213087_213951_+|ABC-transporter-permease-subunit
MDWIFNFPFKLNIDVALIDRTVKNFSIQFSGFFNVIKNILNGLIGGILTILNFIPWWVLVLLVFFAGWKLTGKLRNGILYSCMLFFIGVIGLWDLMNDTLSIVLAAVFISLLLGFPIGILISGNERINSFVRPILDTMQTMPVFVYLIPAVLFFGLGKAPAVIATTIYAIVPVIRLTSHGIRQVDKEVVEAARAFGSTKFQALWKVQIPQALPTIMTGVNQTLMMAMAMVVTCSMIGASGLGMEVLIGVNRIEIGRGLVAGTAVVIVAILMDRITQAWINRSEVKKK
>NZ_CP028105.1|WP_005981795.1|212111_213071_+|ABC-transporter-substrate-binding-protein
MKKKIFTFIITGFLTLAFLGCGGNDKKEVRFADAGWDSNKVHNAVAGFIIENAFGYTWSEVPGSTPILHEAIKSGEIDVHMEEWTDNIPSYYPDLKAGLFQELGTNFDDNRQGIYVPKYVIETMAPDLKSVKDLPKYKELFKDSENPEKGRIYGAIPGWEIDNIMYKKYEAYELNKDFVYFRPGSDAALSAAFTAAYEKKEPIVGYYWEPTWLLGKYDFVLLEDEPYDAEKYFEGKTACPSVKVTIGASNKFKEKAPEIAAFLSKYHTSSKLTSEALAHMQETGDNYNATAKWLLKNNDNLIDQWLDADKAAAVRKALN
>NZ_CP028105.1|WP_147385051.1|209948_211775_-|oligoendopeptidase-F
MLKREDIDKKYKWNLEEYYPSWEVWDRELAQTRELMKKVPEYKGKIKYSSEKFTEMIQLEEKIGRTIEKLYIYPYMLKDINSKDETASVKLQEIMSILTEYSVATSWMTPEILEIPQETMEKWIEKNPVLKEHKFSLMEIYRLQGHVLDEGKEKLLSYYGQYMGAPDDIYGELSISDMKWNEVELSDGYKGPVTNGIYSKVLATNRNQEDRKKAFEALYGSYDANKNTYAAIYRSLLQRDAASSKARNYKSTLDKALEPKNVPSEVFETLLKSAIDNNAPLQRYVKLRQKALGLEGYHYYDNSINIVDYNKEFSYDTAREMVLNSVAPLGQDYSEKMNKALSEGWIDVYETENKRSGAYSIGIYDVHPYMLLNYQSTMDDVFTLAHELGHTMHTILSNENQPYASSNYTIFVAEVASTFNERLMLDYMIKNSEDPKEKIALLEQALGNIVGTFYIQTLFANYEYQAHKLVEEGKAVTPDVLSGIMDNLFKQYFGETLTMDELQKIVWARIPHFYNSPYYVYQYATSFASSANLYDRITNEKYGMEERGAATSAYLELLKSGGNDHPMNQLKKAGVDLEKEESFHAVAKEFDRLLDQLESELEKLENNK
>NZ_CP028105.1|WP_005981799.1|208839_209763_+|multidrug-resistance-efflux-transporter-family-protein
MKKALLFGIGASFFFSFTFVLNRQMNIGGGNWYWSSSLRYLFMLPILFCIVATKKQLSPVIEDIKKNPVSWFIWSTVGFGFFYAPLSFASAYGASWLVAGTWQLTIIAGALMSPFFYTIVDGEKIRSHIPKKFLLVSLVILTGIFLMLSEEAKKISIIDSLFVVVPVLFAAFSYPLGNRKMMELCSSRLNTLQRVFGMTLCSIPFWIIIVIFGFVQTGPPGHNQLIQSFIVAVSSGVIATIMFFKATDMVKGDTHKLAVVESTQVGELIFTLLGGVLVFHDTIPTTLGIVGIILVAVGMMVNSFIQE
>NZ_CP028105.1|WP_005981801.1|207506_208820_+|HlyC/CorC-family-transporter
MDETPGTTNVISQLLFLLILTIANAFFAGAEMATVSVNKNKIKMLAENGNKNAQLLQELLKEPTKFLSTIQVAITLSGFLASASAATSFSAPLDILMTKLGIPYGETIAIIIVTVVLSFFTLVFGELVPKRIALQKAEAISLFTVKPVLFISRLTSPFIKLLSFSTGLVLQVLGMKAENLEENISKEEIKSMVEAGQANGVFNETEKEMINSIFEFDDILASEIMIPRTDVYSIDIDASIGEYLDELLETKHSRIPVFEGDIDNIIGVLYIKDLILEARNKGFENVDIRSILRKPYLVPESKNIDTLFKEMQKSKKYIAILIDEYGGFSGIVTMEDLVEEVMGNIDDEYDDNEPKLEKIDNHIYLVDGLYPVDELIDILNIDIVSKNHNTISGYLIDTLGEIPDNSYLDKEIKINNTIFKIKSIKENRIDKIELILK
>NZ_CP028105.1|WP_005981803.1|207055_207421_+|ACT-domain-containing-protein
MNLRILSTDFSICKIKNLKDVNFEDEFVFIGKTDEEISLVCSEKYVPQEYIECDNGWKGFRIEGVLDFSLVGILAKISGILAENEISIFAVSTYNTDYILLKADKFDKAVEILKKADYIFK
>NZ_CP028105.1|WP_005981814.1|206161_207046_+|DMT-family-transporter
MNYLGELYALITAFGWTFSSIFFEAASKKADSITVNVIRLIMGIIMLGSATFLSRGVFFPTDSTLHNWTFLSISGIIGLFLGDMFLYESYILIGARICMLFMTMTSLIVGLFGFLFLGESLTLVQTIAMFITCSGVLMVVLKPKSENPEDKKLSPKGIAFITTAVILEALGNIFTKIGAKGYDPSSSTQIRMICAMGVFLFYLTFKKKWGKIFISFTDKKLLGLILLGTVTATVGITFLISAFNLINAGVASTFSSISPIIVIPISIIVFKEKVKIREIAGAFVSVIGIALFFL
>NZ_CP028105.1|WP_040490918.1|204499_206044_+|AbgT-family-transporter
MKQEKKGFFNKFLDFIEVGGNKLPHPVTLFVLFCLTIIIVSGITEKMGVSATYNALNKKTGNFEQITVTVKSLTNAAGIRYIFNSMVKNFTGFAPLGTVLVGIIGIGVCEGSGLMSSTIKKVVMGTPRRAITAIVVFAGVMSNVASDAGYVVLVPLGAVIFLSFGRHPLAGLAAAFAGVSGGFSANLLLGTTDPLLGGITTEAARLIRPDYFVAATANYYFMFVSTFIITALGTIITEKIVEPRLGPYHGDVDHDMKELTDLERKGLRAAGLVVLAYLAVMLFLTLPANAVLKVDGSLKAWTSSGLIPAMMFFFLLPGLAYGFTAKTLKSDKDVAKLMGKALAGMGGYMALAFTASQFIAYFGYTNLGTILAVKGADTLKSIGFTGLPLILGFVLFTAFINLFMGSASAKWAIMAPVFVPMLMELNYSPEFTQAAYRIGDSSTNIISPLMSYFAMIVAFMQKYDKDSGMGTLISMMLPFSICFLLGWTILLAIWFAFGLPIGPGVFIEFSKMLG
>NZ_CP028105.1|WP_035959974.1|219084_220335_-|uracil-xanthine-permease
MEKIGSKTKLLLGAQHVLAMFGATVLVPFLTGLNPSIALIAAGAGTLIFHFCTKRIVPVFLGSSFAFIGALSLVLKDEGIGAVKGGVIAAGFIYLLMAYLVKVFGVEKIKSFFPPVVTGPIIMVIGLRMSPVALSMAGYANGKFDPKSLIIALVVIISMISITIMKKSFFRLVPILISVTLGYVVAMFMGLVSFEPIAKANWIGLSAEAANDLFTLPHFSVSAVLAIAPIALVVFIEHIGDITTNGAVVGKDFFKNPGIHRTLMGDGVATIVAGLLGGPANTTYGENTGVLAVTKVYDPSILRIAACYAIVLGLLGKFGVILQTIPAPVMGGVSIILFGMISSVGARTLVDAGLDFSNSRNLIIASLIFVFGIAVDNIVIWKTVSLSGLALAALAGVVLNKVLPLDREVAINKKID
>NZ_CP028105.1|WP_005981785.1|220412_220790_-|thioesterase-family-protein
MLKEGMSLTLEKIVNENETAAKIASGALNVFATPILIAFMENASFELVQKELPAGETTVGISVDIKHLKANLVGDKIKCVSVLEKIDGKKLDFSVKVYHGDTLVGEGKHGRFIVNEEKFLSKLKG
>NZ_CP028105.1|WP_005981783.1|220853_221111_-|hypothetical-protein
MLKVWIVIGISLLIIAAYVGILLASSTKESDDKYVVGILKTGYKVFEYFNRKKNNLGVYFSYAILWVGYMVLNGRKPKLKKDTMK
>NZ_CP028105.1|WP_005981781.1|221133_221766_-|thiamine-diphosphokinase
MKTAYVFFNGQLEGSREFYIKLLAKEKGDIYCADGGANHLETLGILPLEIWGDLDSVTKEIIEKYRNNKVTIKKFPKDKDYTDGELILQHISKMDYDKITIIGGLGGRIDHLLTNLNLIFKFKNLMFVTEKEKIFSIEKKAELTELNGKTISFVPFSEKVEGLTLEGFKYPLNKYTLHQGDSICMSNVAVEDRCRVTFDTGKLMGIVLNG
>NZ_CP028105.1|WP_005981779.1|221781_222606_-|endonuclease/exonuclease/phosphatase-family-protein
MKKIKLVFIYFLLAMTIFAQEGYIASFNTLRLGKSQKDYILTAQALEMFDIAGLIEVMDAEGVEKLINALEKVSGEKWDYHISPYPVGKNSYKEYFAYVWKKDKVEFLKERGFYKDTEEKFARPPYGADFKIGEFDFTFVLVHSVFGKNESARRAEAFKMNEVYDYFQNLDLKENDVIIAGDFNLSGFDESFEKLLSHPDKIIYALSPVIKTTLGKKSLASSYDNMFLSTIYTKEFTGKSGALDFTQGQYRLMKDKISDHLPIFIVVKISEDDD
>NZ_CP028105.1|WP_005981777.1|222761_223478_+|HAD-IB-family-hydrolase
MIAAFFDIDGTIYRNSLLTEHFKKLIKYELLDFREYDTRVKEAFKLWDERVGDYDKYLLGLTQTYVDAIKGLSTKYNDFVADQVVELKGNRVYSYTRRMIKWHKEQGHKVIFISGSPDFLVSRMAKKWKADDFCGSVYHIKDGVLSGKISPMWDSENKMKSIHMFCQKYGIDLMKSYAYGDTHGDYSMLLSVGHPRAINPSLELLNSIRESDYLKKNTEIIIERKDIIYKVHSDVETL
>NZ_CP028105.1|WP_005981775.1|223504_223843_+|hypothetical-protein
MTVRLFYFIISFMFMFFTSNFDIQEKHSAFKDLPQNILLLGKIESSREYSFIKIDKIELADRTNLKNPIPAFLEMTEIVTEEPCINTVIYPQKDSLTFYTILERYGSRILLI
>NZ_CP028105.1|WP_005981773.1|223901_228131_+|2-hydroxyacyl-CoA-dehydratase
MREFHIGMDVGSTTIKIVCLDEKDNIIYSIYQRHLSNVRETTKKMFDEFLEHIKSNFGEDIRYRISITGSSGMGISSWIGIDFVQEVIACIKSIETLIPETDVAIELGGEDAKITFLKNDMDQRMNGSCAGGTGAFIDQIATLLDTDASGLNELAKGFDSIYPIAARCGVFAKTDIQPLINEGVKKENIAVSVLQAVVNQTITGLACGKKITGKVAFLGGPLFFLSELRNRFIDTLKLTPEDVVFPENSQLFVAQGAAFLAKENESVFSYDELKTKIERLNEKDTSDTSRLQPLFENEDALNEFLERHEKEKIETRDLSTYEGNAYLGIDAGSTTIKVVLISEEKEILFSHYSHNKGNPLDNIIATLKNLYSKMSEKVIIKGSCVTGYGESLIKAALRVDIGIVETMAHYKGSQFFQPNVDFILDIGGQDMKCLKIQDGIITSILLNEACSSGCGSFLETFAHSLGMDILEFSRLGMESKSPADLGTRCTVFMNSKVKQAQKDGVEVSDISAGLSYSVVKNTLFKVIKIKNKDELGKNIVVQGGTFLNNSVLRAFELVSERNVIRPNVAGLMGAFGAALIAMEQAEESSTIMTLDELNNFNCTTNLTRCKLCNNHCLLTIHKFKNGETFISGNRCDNPLGKMKKNTAPNMFDYKYNRLFNYTPLEPSKATRGEIGVPRVLNFYDSYPFWFTLLTHLGFRVIISDDSSKKLYEKGIDTISSDSICYPAKLVHGHIVDLIEKGVKRIFYPCVIFEEKEDIKSSNQFNCPIVMSYPEVINNNMDILKEKHIDLILPFFSFESKEVLYKTVFEEFERFGITKSEAKMAVDAAWEEKYNFRKDMRNKALEIIADLERTGKTGVVLCGRPYHCDKEIHHGIPNIINSFGIAVLTGDAVASLASLDEELRVIDQWTYHSRLYRAAAYVGKSSCLELIELNSFSCGIDAVTTDQVEEILANHGKVHTLLKIDEISNLGSVKIRIRSLLAALDYKKNALRSSLKKKIEYKKAQFTKKMKKEYTILAPQMAPMHFKLLKTAFKAEGYNLEVLEETQEALDCGLQYVNNDACYPSILVIGELIAALKSGKYDLDKTAVMISQTGGSCRATNYVGFLKKAIRDSGFEKIPILSLNASGFEKQEGFSITLPFAHKCLIAVSYGDILMKLLYHVRPYEKIKGSALELYEKWNEKVKENIANGKFSQFKSNINAIVEDFSKIEVSDEKKIKVGIVGEILVKFSPFANNNLADFIEAEGGEVYTSSLMSFVKYCIYSDIFITERFKGKIAAMKLKAALWVIDQYTKVLNNALQKNPRFGHEDSIQDLAKKTSQYISIGNQSGEGWFLMGEMIEFIEKDVPNIVCVQPFGCLPNHITGKGMIKKLRSEYSNVNIAPIDYDPAYSEVNQLNRIKLMLSVARKNLKNS
>NZ_CP028105.1|WP_005981771.1|228196_229303_+|alanine--glyoxylate-aminotransferase-family-protein
MYKANYLMMTPGPTMVRENVLKARCSFFGNPDLDPNFFAFYEELCKKTGKLFGAKKAQTIIMNGEGMLGLDTACASLTEPGDKVLVISNGIFGEGFKGLVETYGGEVTLFETDVKKALDIDKLRIFLEKNKDFKYATMVHCDTPSGVLNNVEVICKILKSEGIMTVVDSVAAVGGVQLEVDEWGIDIALGGSQKVFSAPSGITIMTVSNDAWEAIENRKTPIASFYCNLSLWKNSVKEQLFPYTMPASDLMAFDVAIDNIYKEGVEKVRERHYTAAEYVRTRLMDMGVDLYLKNGYSPTVTAFCLPEGYNCKEVSDYLLHNFEVMIADSYSYLSNKVLRIGHMGENARFYRLDYTLKAIEKTLRVLKK
>NZ_CP028105.1|WP_005981769.1|229448_230177_+|GntR-family-transcriptional-regulator
MCDFDKNNKMPLYGQLMNFLLSEIECDKFKEHEKIPSERDLCDKFNLSRDTVRQAIFQLEKMGYIYKKHGKGTFVAQKQLKPDLYKFYDFTEEMKKLGKEAVSKVLSFEIIPADKYISKALKIKENSNVHRITRLRLVDSIPLIFEKAYLSTEKFDFFSIDELSNSSLCNILKNRFSVKFSKGEETFYPITPDDEITRYLNLMKFQPVIKIERTTFEDEIPVMFTERIIRGDKFKYTITTSF

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Crispr_ID: NZ_CP028105_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_2

432155-432303

TypeVI-C

Consensus_repeat	Method
AAGAGTTTAAATTCCACTTATGTGGATTTAGTCC	PILER-CR

2 spacers

cas13c

The CRISPR arrays of NZ_CP028105_2

>merge|NZ_CP028105|2|432155-432303|PILER-CR
TTATGTGGATTTAGTCAGGAACTTATGAATTATAGACTTGAACAACTTAAAGAGTTTAAATTCCACTTATGTGGATTTAGTCCAAAGTGAATCAGGAATGAAAATAAAAAATGATAATAGTTTAAATTCCACTTATGTGGATTTAGTCC

>NZ_CP028105|2|2|432155-432303|PILER-CR
TTATGTGGATTTAGTCAGGAACTTATGAATTATA	GACTTGAACAACTTAAAGAGTTTAAATTCCACT
TATGTGGATTTAGTCCAAAGTGAATCAGGAATGA	AAATAAAAAATGATAATAGTTTAAATTCCACT
TATGTGGATTTAGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005981373.1\|425519_426125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP028105.1\|WP_106878540.1\|445721_449909_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP028105.1\|WP_005981365.1\|431389_431890_-\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	unknown	unknown	gnl\|CDD\|372841
NZ_CP028105.1\|WP_005981974.1\|428389_428629_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP028105.1\|WP_106878534.1\|429444_430302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_106878538.1\|428651_429458_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP028105.1\|WP_005981375.1\|424737_425523_-\|phage-integrase-N-terminal-SAM-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|338776
NZ_CP028105.1\|WP_005981355.1\|440555_441626_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349906
NZ_CP028105.1\|WP_005981363.1\|436660_437473_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133382
NZ_CP028105.1\|WP_005981358.1\|438128_439838_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981372.1\|426491_427109_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_CP028105.1\|WP_005981369.1\|427714_427981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981357.1\|439968_440436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981347.1\|444725_445328_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|377175
NZ_CP028105.1\|WP_005981382.1\|422217_424107_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_CP028105.1\|WP_005981380.1\|424118_424529_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981351.1\|443383_444436_+\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP028105.1\|WP_005981353.1\|441655_443182_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|173864
NZ_CP028105.1\|WP_005981349.1\|444450_444726_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_106878539.1\|432583_435937_-\|hypothetical-protein	cas13c	cas13c_CAS-VI-C	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005981373.1\|425519_426125_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	5.20591e-06
NZ_CP028105.1\|WP_106878540.1\|445721_449909_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.52732e-36
NZ_CP028105.1\|WP_005981365.1\|431389_431890_-\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	gnl\|CDD\|372841	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system. ToxN acts as a toxin, it is part of a type III toxin-antitoxin system. It acts as a ribosome independent endoribonuclease. It interacts with, and is inhibited by, the RNA antitoxin, ToxI. Three ToxN monomers bind to three ToxI monomers to create a trimeric ToxN-ToxI complex.	2.30911e-47
NZ_CP028105.1\|WP_005981974.1\|428389_428629_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.63385e-05
NZ_CP028105.1\|WP_005981351.1\|443383_444436_+\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	7.54268e-125
NZ_CP028105.1\|WP_106878538.1\|428651_429458_-\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.95083e-51
NZ_CP028105.1\|WP_005981375.1\|424737_425523_-\|phage-integrase-N-terminal-SAM-like-domain-containing-protein	gnl\|CDD\|338776	pfam13495, Phage_int_SAM_4, Phage integrase, N-terminal SAM-like domain.	9.58403e-08
NZ_CP028105.1\|WP_005981363.1\|436660_437473_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.15557e-32
NZ_CP028105.1\|WP_005981355.1\|440555_441626_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	5.26209e-106
NZ_CP028105.1\|WP_005981372.1\|426491_427109_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.37543e-16
NZ_CP028105.1\|WP_005981347.1\|444725_445328_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|377175	pfam03956, Lys_export, Lysine exporter LysO. Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.	8.67813e-61
NZ_CP028105.1\|WP_005981382.1\|422217_424107_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	9.77447e-15
NZ_CP028105.1\|WP_005981353.1\|441655_443182_-\|DNA-binding-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.81065e-173

>NZ_CP028105.1|WP_005981365.1|431389_431890_-|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin
MERLRFYEVDLDYMEYIQKVEKKIMDSINSKSNRKFIGIVLKIDNLDYIIPLTSPKEKHKKMKNNIDFLKIDNGLLGAINFNNMFPVPKELHFEKDINLEMDIKYKNLLINQISWCNVSSNKEKIYRTAERLYKEITSKREKSHFWSRCCDFILLEKIAKEYKKTN
>NZ_CP028105.1|WP_106878534.1|429444_430302_-|hypothetical-protein
MENKRNTKNQPFCWQEKKILRLLRCQYDGKEHDKLRNLYLTLTEIYSDFNGRDIKYYTQTIAKYSSLSKDWIPKGLKIFEKLKVIQLVEERSKGKFKGKRLIFTPENIIPDKTITEFLEPSEDSSYLEDIKRVKDINNTHTGEEEKVSDNLKQEKEKLSDAPMEIQDILKKYKELNLPEYNYRPDNYVLLGVWRELGAVKLFEALTLMSKSEFVKNNMSINSIFKIENLKKALNGNFKDKEKKSKEKKEPKKKFVRPVYEDSTGNFIKELLNKIAKEDGIEDEEV
>NZ_CP028105.1|WP_106878538.1|428651_429458_-|ATP-binding-protein
MKKCEYCGKEYVKNESDYLKNLSETFRKNLEYLPTCDCLEKKKERELEELERKRTRENIEKKMQKCKDISVIDKKFQNSRFENADIKCEQMQLAQQYVKSFMKKEKQEGLLFYGGVGTGKTFTTACIANYLMERGKTVLVMNLGLYLNKLTIEWGAAERDILEQVEKCDLLVIDDFGGEKGLDKNQTGWRGEKIYNLIDARYRSEKPLIISTNLNFSKDEEKCEISEKFSSHGQNRIRDRIIDMCFPVQVTGKSKRGMTKQKFFEFMY
>NZ_CP028105.1|WP_005981974.1|428389_428629_-|helix-turn-helix-domain-containing-protein
MEREEYIFKKLGNLSPMNKTLADEIVKELGEWATINEVAKYFKKHRNTIYNKVEEGDILHRKMGTSILIYTRSLIFLLE
>NZ_CP028105.1|WP_005981369.1|427714_427981_-|hypothetical-protein
MIEKIMKAVKSGNKKRGRNITIGITIGLILTGEMGYSEPLEKKAIYDKEIKWLWSLKERKNSVNGSDLDGADAPSSAVTDGIPLWGYM
>NZ_CP028105.1|WP_005981372.1|426491_427109_+|LexA-family-transcriptional-regulator
MYNLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENFFSNTFDDNEILKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKNCDFATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQNPITKAIVLKSINKSYNSISITSEDEFYILGKVVCKIDYNF
>NZ_CP028105.1|WP_005981373.1|425519_426125_-|hypothetical-protein
MELLLATEFKKEKVDFFLDIDEVVMDIEQLRKVTGYSSGRKIKELFETHPELLEKEYSYKKKVPNLEGGVTKMREKRFFTESGIYEVSFLASTPRAREFRRFAGTILKSVRKGEMIPKLPADRWSLMEKKFDGIISTFEDRQDLLENLEGNTEKVVNLLEELKGKLTDFDNLKEDVKALKKAVNLMSRQMDDFLKAFGEEG
>NZ_CP028105.1|WP_005981375.1|424737_425523_-|phage-integrase-N-terminal-SAM-like-domain-containing-protein
MIIDKFFMEILTLKGELIYRGYSESTCRIYTSTVKDFLESTDKEIIKIRKGDVIRYLDKQGEKVSKNTILIKLNALELFFEEVLGLDITKDIYKYKREYKYKLMTMKEIETVIALSKDRERLIYTLMKETGIISEEIGMIKVEDLKCADNQWFIVVNGIKYNISIDLARTMYNYMEKHRIQEEIFLSRKKTGLHGTVIRKKFREKTEEVLGIKYGLNEMRHGIALEMWKRGEVDKVTKYLRNKSKGSIKQYFKNFGYDLQY
>NZ_CP028105.1|WP_005981380.1|424118_424529_-|hypothetical-protein
MQGIDKKVLEYKENLLRATELREKIIDAEISFNILKKELGLTVHELRKLVAGELQDKEAAVEKLIKNTPKAIIQRDKEFKHFQKILLKKGIKITELEDTLKVNRNKIYRTIRGENINRDRELEQKLENLLDEKLFC
>NZ_CP028105.1|WP_005981382.1|422217_424107_-|Mu-transposase-C-terminal-domain-containing-protein
MNYTVKDLEQKLNKSRYQVMRMAKEYNWQVVKVAENGTTKNYYLASDVEKSLGISTETKENATRTLTVIKKEAVAVDELPEWNQRVAWARYMLCLKLDEAYEERGELKEVIIKEFVNRAFEDYPEQMKVLKRISVPTLRRWFMSYSKSPSDPLALCSKHGTNKGLRNVNKEVLEDVKSLYLSKNKPKMTYVYERIVLKHGTEAISYGTLRNYIKYDLNSIEKDRGRMGKKEFRDMHDFYIERDYSTLEVNEMWVSDGHDLEMSCFHPYEKTSRGERKVATPKLVIWMDMRSRMITGWTLSWGETAESIAIALKNGIEHYGKPKQVYTDNGKAYRGKVLKGTKSTDDGLDGIYAALGIKARHAIVRNAQAKPIERWFLDFKESFTKNSLTYKGGHILERKEDLKDILKDKILKGKILEYEELKEYISEWVKYKNHMYYAIRRMAKKKAHRGDSMNNMTPLEVFNTLPINKRKMLTAEQLRLLFLYEDIKTIQQNGVTYLGNTYRNEHLFFHLKEQVKIKYDPHNLEYIYVYLSSGEFLCKADKINKSGFGTVEEMKEHKRLVKKVKKLENNLIDARNQKREVDGMIEFSFERREKLEKEEIKPLVFKEEKKKKEKKSIKIADGMEIIIDD
>NZ_CP028105.1|WP_106878539.1|432583_435937_-|hypothetical-protein
MENKNKTKPNRGSIVRIIISNYDTKGIKEIKVRYRKQAQLDTFILQTTLDKGNNSILISEFRVKAREKNRYSFTYDGKEKFSAPSNSVVITKIDNAAPEKFKEIRKYKITLEIDEKCKTGNMITAAIEDLLEDDIAREGIRNPRRKASKTERKLIAESICHNYAQIAQCPVEEIDAVKIYKVKRFLSYRSNMLLFFALINDFLCKNLKNKKGEKINEIWKMENKGNNKKIDFDENYNILVAQIKEYFTKEIENYNNRIDNIIDKKELLKYSEKKEESEKNKKLEELNKLKSQKLKILTDEEIKADVIKIIKIFSDLRHSLMHYEYKYFENLFENKKNEELAELLNLNLFKNLTLLRQMKIENKTNYLEGREEFNIIGKNIKAKEVLGHYNLLAEQKNGFNNFINSFFVQDGTENLEFKKLIDEHFVNAKKRLERNIKKSKKLEKELEKMEQHYQRLNCAYVWDIHTSTTYKKLYNKRKSLIEEYNKQINEIKDKEVITAINVELLRIKKEMEEITKSNSLFRLKYKMQIAYAFLEIEFGGNIAKFKDEFDCSKMEEVQKYLKKGVKYLKYYKDKEAQKNYEFPFEEIFENKDTHNEEWLENTSENNLFKFYILTYLLLPMEFKGDFLGVVKKHYYDIKNVDFTDESEKELSQVQLDKMIGDSFFHKIRLFEKNTKRYEIIKYSILTSDEIKRYFRLLELDVPYFEYEKGTDEIGIFNKNIILTIFKYYQIIFRLYNDLEIHGLFNISSDLDKILRDLKSYGNKNINFREFLYVIKQNNNSSTEEEYRKIWENLEAKYLRLHLLTPEKEEIKTKTKEELEKLNEISNLRNGICHLNYKEIIEEILKTEISEKNKEATLNEKIRKVINFIKENELDKVELGFNFINDFFMKKEQFMFGQIKQVKEGNSDSITTERERKEKNNKKLKETYELNCDNLSEFYETSNNLRERANSSSLLEDSAFLKKIGLYKVKNNKVNSKVKDEEKRIENIKRKLLKDSSDIMGMYKAEVVKKLKEKLILIFKHDEEKRIYVTVYDTSKAVPENISKEILVKRNNSKEEYFFEDNNKKYVTEYYTLEITETNELKVIPAKKLEGKEFKTEKNKENKLMLNNHYCFNVKIIY
>NZ_CP028105.1|WP_005981363.1|436660_437473_-|MerR-family-transcriptional-regulator
MYKIGLFSQITKTTIKALRYYDEVGLLKPSIINKENNYRYYTTEQLYTLHKILCLKQMGFSISEISTILNNNNIKQIINRKKIDLEKEIACLVDQLTRLNNFSNENIKGDGFMNYQAAIKNTSECIVYYKKLSIANYNDYFKVIPQIGKEVIEANPDLKCMIPEYCFIQYLDDEYKEQNFSIEYCEAVTKFGKETESIKFKKLSSILVVSTLHKGDYNNLRDAYNYLFSWINKNNYECIDKAREVYIDGIWNKKNKEEWLTELQIPIKKL
>NZ_CP028105.1|WP_005981358.1|438128_439838_+|hypothetical-protein
MENRGKVVAEKMIEIFELLEKEIRETIKNKETLPEDKFMPGWAKGIHFSWYHHMEKPEYGTKESNKTTCFFEFNSIHVSHHRMEEEVDIDLKFLTTEIFKNDIVPTVQSWLQNKVDNEPYGGLYNASFGITVTFSVSRDPLPTDAPHMQGQIWEQTRITAKDEKRLNKRKELIYNFIKNEEYKSADISEIDNSLTPICSVAVEDFLEEFGRVHLIEFFTALIAQAKKARFKSTMSHLIYGFANGAAILTRANENHTPNNEELALACWLCMMMLIHGTDKYERQYGRDYLKTAGELGYKEAKNILKFGTGQIPADTVQFKNKYVTCLGNDIDKVIDLKIKEECEEAYKSMVEFIIKLIKAGFPNEYSIKFNSKVKEFLPIPDLKKTKANTFWNNCAKYPALYPLMKEYAHTIMDSYDYYSDADCEQAVPVGGYAVFALGLADISNGDIVQEFMEQNDSEHSISPSWFVGEYIDKFGITSENIPVVIACLTNSNNHGYKGSNFAGLNNPDILKKFVEELENSEISSYSVYEIIESIWDDEDGLEEAISAAEKVNQKYLQKILELSEEDDED
>NZ_CP028105.1|WP_005981357.1|439968_440436_-|hypothetical-protein
MNIMEKYAEKTINELGKLFFEIGNEQLVPELSKHINIALEKFKEMQNEDDELNKIIIIADVDEKLFAFATGDGSELSSKEDESVFYIAKSENFNECMELIKHICFGNHPEGYLSLDSEVYHWIGDAMPDIDEDMSVTIYGGYYYGETEVDPFWES
>NZ_CP028105.1|WP_005981355.1|440555_441626_-|M20/M25/M40-family-metallo-hydrolase
MKELINMIEELTNTFGAPGFEDEVMEKIKKEVNFLSAERDSINNLYIGLGEKDSAVPTVALDCHTDEVGFIVENINRNGSISFLTLGGWHVGNVPASAVVIKNNKGEYIKGVVTSKPPHFMTDEEKNRLPKMSELTIDIGTSSYEETVELYGIEVGNPIVPDVSFVYDEKIGIMRAKAFDNRLGCAASIEVLKAVKNNGIKNVNVVGAFASQEEVGLRGAQVAAYRVKPDFAIVFEGSPADDSFKEGTASHGALKKGVQLRVVDGAMISNPRVLKFARDIADKKGIKYQMIAREKGSTNGGKYHISETGIPVIVLGIPTRYIHTHYSYASIDDLTAAISLAVEVIKELNKDIIKSF
>NZ_CP028105.1|WP_005981353.1|441655_443182_-|DNA-binding-protein
MKKRILVLLSCLLSFLLVSCGGSKTAEKAASGPKDTLVFAQISECKTLDPQDTTEQYSQRIINVLYDRLVEVDEMTGETIPGLAKSWERIDDNTLLFHLNENVKFHNGEKFTANDVKFTIERAKSLPKVGHLYKLISNVEVVDDNTVKIITSEPFAPLLAHLSHKTASIISEKYYAEKGNKYFENPVGTGPYKYKDWKIGDRITLEAFPEYFKGEPAIKYIVVRAVPEENSRVIGLETGEIDMTADLGAESRKIVLDNKDKINYLESSGISVNYVGINTDKGVLKDRDVRRAIAMAINRDDIINSIMMGTVDKANSFIAPGTFGYSPDSKVLDYNPEEAKRIIQEKGLTGTKLSLGVSNSPVRMQMCEIIQAQLKEVGIDVSIESLEWGTFLAATGRGDLDMFTLGWGPSTYDGDYGFYPNFHSSQLGGAGNRSQYVNPAMDKLLDDAKKEVDQNKRKELYKEVAEIIYDDVPVIPMYYSNNTVAAVKGIEGVKATSYINFDELSFKK
>NZ_CP028105.1|WP_005981351.1|443383_444436_+|galactose-mutarotase
MELTVRNWGKTKFNEIVKLYTLKNNFLEVEILNYGGIIRKISFPDKNGKVENIVLNLDSISDYEERSPYFGAVVGRNAGRISNAELKIKDTIYKLNANSGKNNIHGGINNFSHKIWNAEEIKGNDFIGIELTLNSPHLEEGFPGNISITVRYILKNDELSLEYSGITDRETYMNLTNHSYFNLSGDFKRDIRNEYLKLDSDAFIAVDEATLPVKISETHNTPFDFHEFSLLKTSLDSEYPQIKIVNHGLDHPFILNQNRDIPAAQLKDDISGRMLKVFTDQPAVVIYTGNYLHEIGKLSDGSDCKKHMGICFETQDYPNVLSFLPEKGKIYTPSNSYSQKTIFKFLINKN
>NZ_CP028105.1|WP_005981349.1|444450_444726_+|hypothetical-protein
MQDIILYILIISVGYFITKKGWIPKIIDRKVGLLQTLSLFFLLGVMGYKIGSDDKIIANFHILGLDSIIVAVCAVLGSILLTHIFYRGGDK
>NZ_CP028105.1|WP_005981347.1|444725_445328_+|lysine-exporter-LysO-family-protein
MLGIALSVIIGALLGFFCKSPLVLAHADNLIKFGLCLLLFFVGIDIGKNQSVFEQLKTLNKKVLLLPFVTIIGSLLGGVLASFITTLSLGEGVAVSSGMGWYSFSAIELSKINAQLGGTAFLSNVFRELLAIFTIPFIAARIGSFQSVSSAGATAMDSVLPVINRSNPPDISIIAFYSGLVITIVVPILVPAVVAIFNLG
>NZ_CP028105.1|WP_106878540.1|445721_449909_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYIKYEVIKIMSENSARKNKMKKKILSPLLTVGIMSICIPLEDAWASSPVDYVGTVNLPASIGTGKETANDGWTVTIGNGSTPTKVTQDGKTVISVNDNAKITVKTDAAVEGNSNSNSEGHFNSGPNVIEFNSKSTLTIEAGGTVQQLGSTTNGEAINAHGFGNTIINNGTIHSNNGAALWFQDTSISVSVADRNKVVNHGTISTSKGDGYNVFGSSRGNAGPGLVFDNYGTIKGSLKFGSGDDSLLFGPGSKITGNVDGGGGTNDLTLDANSGESATLAGSVLNFSSITKDGEGAWAILGSVPAVPGDPHPSSPINGSLKEVDSLVIKKGLLSLVGANPDFNGTVNIDAPGQLSAQAQGINGATNMTNNGKLIFEQPIDDSYTGSAITGTGQVVKSGTGSLTMSSGTANTYSGGTFINEGALVVDKDSDLGAVSGSITLGTDNTAGGTNGTLRFDSSFNLETTRAITLMEGGGTIDTQGYITNIDQTIAGTGTLTKTGSGTLTLNATNSYIGGTVLQEGVLGINSDSALGNSNSRLVMYDTTTLQLNGNVDSNRLVTLAGGPSSMMTINTQANNGAFNGNIDGLGSLVKTGSGTLSLYGNNLYQGGTKVKEGTLAINSDASLGGVNGLLELERNTTLKLDGNVYMNSRPVIIGGGDNATLPQSVTIDTQGYTGVISQNIDQNAGEKTELIKTGTGTLGLYGNNTYSGGTWVKNGTVAITSPLSLGKSDVQLGDHEDTSLDGSGSTQGTLRADADIDFRGSGKSIILNKGGGTINTNGNAVILDENSLKDGIAGTASDLGRDLHKTGAGVLTLLDNQYYSGRTFIDQGILRLDAVEPNTPLSNSKGLLNTSEVTIAAGSRLEGQGIVGNSMNVQLNNSNAPVAANLTTIINNGTIAPGLERFNNTFDSTDSQFVPLTLAGNYRAGKGAAVEIHTELLDDISNHGSLTIDGVIDSASDKSGTGVVVIHQGGNGATTNHGIEIIRLRGNNSGATQADLIKQLDENFHLVSDFKTSKGQNAVVAGAYSYIMESDKDWYDNPNNQVGLFLRNATNNDGSLVPHPATPLYETYSLILGSLNKLPTLEQRIGHRPWLNDKNGYETGYDRGKTEIYPNNVWMRVEGMKGYYEPHLDSNKGSTSSYRLRFSRVNVGVDMPIYENADGSRLIAGINGNMSRAWSDIDSIHGSGDITTTGYGLGATLTWYNHNGFYTDAQAWHNWFKSDIDSNTITTDLDQVKGNHAKGYALSLEVGRIFDLNQHWSLTPQAQIAYSRVNFDSFTDIQNSVIINEKDYVGLEGRLGLALNYEKSHLDSSGKMRRNKLYILGNIHQEFKGDSTVSISGVDYESKMNNTWVSVGVGGSHNWDNDRFSIYGELSLASSTKKFGEEYELAGEIGLRIAF

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Crispr_ID: NZ_CP028105_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_3

435967-436127

TypeVI-C

Consensus_repeat	Method
GTTTAAATTCCACTTACATGGATTTAGTC	CRISPRCasFinder

2 spacers

cas13c

The CRISPR arrays of NZ_CP028105_3

>merge|NZ_CP028105|3|435967-436127|CRISPRCasFinder
ATTTTAAATCCACTTACATGGATTTAGTCGGAAGTAGAAAAAATACAAAAAATGATTGAATATAGTGTTTAAATTCCACTTACATGGATTTAGTCTCCAATTGGAACAGATTCTTGAACCACTGTTGTTTTAGTTTAAATTCCACTTACATGGATTTAGTC

>NZ_CP028105|3|2|435967-436127|CRISPRCasFinder
ATTTTAAATCCACTTACATGGATTTAGTC	GGAAGTAGAAAAAATACAAAAAATGATTGAATATAGT
GTTTAAATTCCACTTACATGGATTTAGTC	TCCAATTGGAACAGATTCTTGAACCACTGTTGTTTTA
GTTTAAATTCCACTTACATGGATTTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005981373.1\|425519_426125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP028105.1\|WP_106878540.1\|445721_449909_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP028105.1\|WP_005981365.1\|431389_431890_-\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	unknown	unknown	gnl\|CDD\|372841
NZ_CP028105.1\|WP_005981974.1\|428389_428629_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP028105.1\|WP_106878534.1\|429444_430302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981375.1\|424737_425523_-\|phage-integrase-N-terminal-SAM-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|338776
NZ_CP028105.1\|WP_005981355.1\|440555_441626_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349906
NZ_CP028105.1\|WP_005981363.1\|436660_437473_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133382
NZ_CP028105.1\|WP_005981358.1\|438128_439838_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981343.1\|450174_450435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981372.1\|426491_427109_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_CP028105.1\|WP_005981369.1\|427714_427981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981357.1\|439968_440436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981347.1\|444725_445328_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|377175
NZ_CP028105.1\|WP_106878538.1\|428651_429458_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP028105.1\|WP_005981380.1\|424118_424529_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005981351.1\|443383_444436_+\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP028105.1\|WP_005981353.1\|441655_443182_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|173864
NZ_CP028105.1\|WP_005981349.1\|444450_444726_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_106878539.1\|432583_435937_-\|hypothetical-protein	cas13c	cas13c_CAS-VI-C	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005981373.1\|425519_426125_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	5.20591e-06
NZ_CP028105.1\|WP_106878540.1\|445721_449909_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.52732e-36
NZ_CP028105.1\|WP_005981365.1\|431389_431890_-\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	gnl\|CDD\|372841	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system. ToxN acts as a toxin, it is part of a type III toxin-antitoxin system. It acts as a ribosome independent endoribonuclease. It interacts with, and is inhibited by, the RNA antitoxin, ToxI. Three ToxN monomers bind to three ToxI monomers to create a trimeric ToxN-ToxI complex.	2.30911e-47
NZ_CP028105.1\|WP_005981974.1\|428389_428629_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.63385e-05
NZ_CP028105.1\|WP_005981351.1\|443383_444436_+\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	7.54268e-125
NZ_CP028105.1\|WP_005981375.1\|424737_425523_-\|phage-integrase-N-terminal-SAM-like-domain-containing-protein	gnl\|CDD\|338776	pfam13495, Phage_int_SAM_4, Phage integrase, N-terminal SAM-like domain.	9.58403e-08
NZ_CP028105.1\|WP_005981363.1\|436660_437473_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.15557e-32
NZ_CP028105.1\|WP_005981355.1\|440555_441626_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	5.26209e-106
NZ_CP028105.1\|WP_005981372.1\|426491_427109_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.37543e-16
NZ_CP028105.1\|WP_005981347.1\|444725_445328_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|377175	pfam03956, Lys_export, Lysine exporter LysO. Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.	8.67813e-61
NZ_CP028105.1\|WP_106878538.1\|428651_429458_-\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.95083e-51
NZ_CP028105.1\|WP_005981353.1\|441655_443182_-\|DNA-binding-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.81065e-173

>NZ_CP028105.1|WP_106878539.1|432583_435937_-|hypothetical-protein
MENKNKTKPNRGSIVRIIISNYDTKGIKEIKVRYRKQAQLDTFILQTTLDKGNNSILISEFRVKAREKNRYSFTYDGKEKFSAPSNSVVITKIDNAAPEKFKEIRKYKITLEIDEKCKTGNMITAAIEDLLEDDIAREGIRNPRRKASKTERKLIAESICHNYAQIAQCPVEEIDAVKIYKVKRFLSYRSNMLLFFALINDFLCKNLKNKKGEKINEIWKMENKGNNKKIDFDENYNILVAQIKEYFTKEIENYNNRIDNIIDKKELLKYSEKKEESEKNKKLEELNKLKSQKLKILTDEEIKADVIKIIKIFSDLRHSLMHYEYKYFENLFENKKNEELAELLNLNLFKNLTLLRQMKIENKTNYLEGREEFNIIGKNIKAKEVLGHYNLLAEQKNGFNNFINSFFVQDGTENLEFKKLIDEHFVNAKKRLERNIKKSKKLEKELEKMEQHYQRLNCAYVWDIHTSTTYKKLYNKRKSLIEEYNKQINEIKDKEVITAINVELLRIKKEMEEITKSNSLFRLKYKMQIAYAFLEIEFGGNIAKFKDEFDCSKMEEVQKYLKKGVKYLKYYKDKEAQKNYEFPFEEIFENKDTHNEEWLENTSENNLFKFYILTYLLLPMEFKGDFLGVVKKHYYDIKNVDFTDESEKELSQVQLDKMIGDSFFHKIRLFEKNTKRYEIIKYSILTSDEIKRYFRLLELDVPYFEYEKGTDEIGIFNKNIILTIFKYYQIIFRLYNDLEIHGLFNISSDLDKILRDLKSYGNKNINFREFLYVIKQNNNSSTEEEYRKIWENLEAKYLRLHLLTPEKEEIKTKTKEELEKLNEISNLRNGICHLNYKEIIEEILKTEISEKNKEATLNEKIRKVINFIKENELDKVELGFNFINDFFMKKEQFMFGQIKQVKEGNSDSITTERERKEKNNKKLKETYELNCDNLSEFYETSNNLRERANSSSLLEDSAFLKKIGLYKVKNNKVNSKVKDEEKRIENIKRKLLKDSSDIMGMYKAEVVKKLKEKLILIFKHDEEKRIYVTVYDTSKAVPENISKEILVKRNNSKEEYFFEDNNKKYVTEYYTLEITETNELKVIPAKKLEGKEFKTEKNKENKLMLNNHYCFNVKIIY
>NZ_CP028105.1|WP_005981365.1|431389_431890_-|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin
MERLRFYEVDLDYMEYIQKVEKKIMDSINSKSNRKFIGIVLKIDNLDYIIPLTSPKEKHKKMKNNIDFLKIDNGLLGAINFNNMFPVPKELHFEKDINLEMDIKYKNLLINQISWCNVSSNKEKIYRTAERLYKEITSKREKSHFWSRCCDFILLEKIAKEYKKTN
>NZ_CP028105.1|WP_106878534.1|429444_430302_-|hypothetical-protein
MENKRNTKNQPFCWQEKKILRLLRCQYDGKEHDKLRNLYLTLTEIYSDFNGRDIKYYTQTIAKYSSLSKDWIPKGLKIFEKLKVIQLVEERSKGKFKGKRLIFTPENIIPDKTITEFLEPSEDSSYLEDIKRVKDINNTHTGEEEKVSDNLKQEKEKLSDAPMEIQDILKKYKELNLPEYNYRPDNYVLLGVWRELGAVKLFEALTLMSKSEFVKNNMSINSIFKIENLKKALNGNFKDKEKKSKEKKEPKKKFVRPVYEDSTGNFIKELLNKIAKEDGIEDEEV
>NZ_CP028105.1|WP_106878538.1|428651_429458_-|ATP-binding-protein
MKKCEYCGKEYVKNESDYLKNLSETFRKNLEYLPTCDCLEKKKERELEELERKRTRENIEKKMQKCKDISVIDKKFQNSRFENADIKCEQMQLAQQYVKSFMKKEKQEGLLFYGGVGTGKTFTTACIANYLMERGKTVLVMNLGLYLNKLTIEWGAAERDILEQVEKCDLLVIDDFGGEKGLDKNQTGWRGEKIYNLIDARYRSEKPLIISTNLNFSKDEEKCEISEKFSSHGQNRIRDRIIDMCFPVQVTGKSKRGMTKQKFFEFMY
>NZ_CP028105.1|WP_005981974.1|428389_428629_-|helix-turn-helix-domain-containing-protein
MEREEYIFKKLGNLSPMNKTLADEIVKELGEWATINEVAKYFKKHRNTIYNKVEEGDILHRKMGTSILIYTRSLIFLLE
>NZ_CP028105.1|WP_005981369.1|427714_427981_-|hypothetical-protein
MIEKIMKAVKSGNKKRGRNITIGITIGLILTGEMGYSEPLEKKAIYDKEIKWLWSLKERKNSVNGSDLDGADAPSSAVTDGIPLWGYM
>NZ_CP028105.1|WP_005981372.1|426491_427109_+|LexA-family-transcriptional-regulator
MYNLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENFFSNTFDDNEILKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKNCDFATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQNPITKAIVLKSINKSYNSISITSEDEFYILGKVVCKIDYNF
>NZ_CP028105.1|WP_005981373.1|425519_426125_-|hypothetical-protein
MELLLATEFKKEKVDFFLDIDEVVMDIEQLRKVTGYSSGRKIKELFETHPELLEKEYSYKKKVPNLEGGVTKMREKRFFTESGIYEVSFLASTPRAREFRRFAGTILKSVRKGEMIPKLPADRWSLMEKKFDGIISTFEDRQDLLENLEGNTEKVVNLLEELKGKLTDFDNLKEDVKALKKAVNLMSRQMDDFLKAFGEEG
>NZ_CP028105.1|WP_005981375.1|424737_425523_-|phage-integrase-N-terminal-SAM-like-domain-containing-protein
MIIDKFFMEILTLKGELIYRGYSESTCRIYTSTVKDFLESTDKEIIKIRKGDVIRYLDKQGEKVSKNTILIKLNALELFFEEVLGLDITKDIYKYKREYKYKLMTMKEIETVIALSKDRERLIYTLMKETGIISEEIGMIKVEDLKCADNQWFIVVNGIKYNISIDLARTMYNYMEKHRIQEEIFLSRKKTGLHGTVIRKKFREKTEEVLGIKYGLNEMRHGIALEMWKRGEVDKVTKYLRNKSKGSIKQYFKNFGYDLQY
>NZ_CP028105.1|WP_005981380.1|424118_424529_-|hypothetical-protein
MQGIDKKVLEYKENLLRATELREKIIDAEISFNILKKELGLTVHELRKLVAGELQDKEAAVEKLIKNTPKAIIQRDKEFKHFQKILLKKGIKITELEDTLKVNRNKIYRTIRGENINRDRELEQKLENLLDEKLFC
>NZ_CP028105.1|WP_005981363.1|436660_437473_-|MerR-family-transcriptional-regulator
MYKIGLFSQITKTTIKALRYYDEVGLLKPSIINKENNYRYYTTEQLYTLHKILCLKQMGFSISEISTILNNNNIKQIINRKKIDLEKEIACLVDQLTRLNNFSNENIKGDGFMNYQAAIKNTSECIVYYKKLSIANYNDYFKVIPQIGKEVIEANPDLKCMIPEYCFIQYLDDEYKEQNFSIEYCEAVTKFGKETESIKFKKLSSILVVSTLHKGDYNNLRDAYNYLFSWINKNNYECIDKAREVYIDGIWNKKNKEEWLTELQIPIKKL
>NZ_CP028105.1|WP_005981358.1|438128_439838_+|hypothetical-protein
MENRGKVVAEKMIEIFELLEKEIRETIKNKETLPEDKFMPGWAKGIHFSWYHHMEKPEYGTKESNKTTCFFEFNSIHVSHHRMEEEVDIDLKFLTTEIFKNDIVPTVQSWLQNKVDNEPYGGLYNASFGITVTFSVSRDPLPTDAPHMQGQIWEQTRITAKDEKRLNKRKELIYNFIKNEEYKSADISEIDNSLTPICSVAVEDFLEEFGRVHLIEFFTALIAQAKKARFKSTMSHLIYGFANGAAILTRANENHTPNNEELALACWLCMMMLIHGTDKYERQYGRDYLKTAGELGYKEAKNILKFGTGQIPADTVQFKNKYVTCLGNDIDKVIDLKIKEECEEAYKSMVEFIIKLIKAGFPNEYSIKFNSKVKEFLPIPDLKKTKANTFWNNCAKYPALYPLMKEYAHTIMDSYDYYSDADCEQAVPVGGYAVFALGLADISNGDIVQEFMEQNDSEHSISPSWFVGEYIDKFGITSENIPVVIACLTNSNNHGYKGSNFAGLNNPDILKKFVEELENSEISSYSVYEIIESIWDDEDGLEEAISAAEKVNQKYLQKILELSEEDDED
>NZ_CP028105.1|WP_005981357.1|439968_440436_-|hypothetical-protein
MNIMEKYAEKTINELGKLFFEIGNEQLVPELSKHINIALEKFKEMQNEDDELNKIIIIADVDEKLFAFATGDGSELSSKEDESVFYIAKSENFNECMELIKHICFGNHPEGYLSLDSEVYHWIGDAMPDIDEDMSVTIYGGYYYGETEVDPFWES
>NZ_CP028105.1|WP_005981355.1|440555_441626_-|M20/M25/M40-family-metallo-hydrolase
MKELINMIEELTNTFGAPGFEDEVMEKIKKEVNFLSAERDSINNLYIGLGEKDSAVPTVALDCHTDEVGFIVENINRNGSISFLTLGGWHVGNVPASAVVIKNNKGEYIKGVVTSKPPHFMTDEEKNRLPKMSELTIDIGTSSYEETVELYGIEVGNPIVPDVSFVYDEKIGIMRAKAFDNRLGCAASIEVLKAVKNNGIKNVNVVGAFASQEEVGLRGAQVAAYRVKPDFAIVFEGSPADDSFKEGTASHGALKKGVQLRVVDGAMISNPRVLKFARDIADKKGIKYQMIAREKGSTNGGKYHISETGIPVIVLGIPTRYIHTHYSYASIDDLTAAISLAVEVIKELNKDIIKSF
>NZ_CP028105.1|WP_005981353.1|441655_443182_-|DNA-binding-protein
MKKRILVLLSCLLSFLLVSCGGSKTAEKAASGPKDTLVFAQISECKTLDPQDTTEQYSQRIINVLYDRLVEVDEMTGETIPGLAKSWERIDDNTLLFHLNENVKFHNGEKFTANDVKFTIERAKSLPKVGHLYKLISNVEVVDDNTVKIITSEPFAPLLAHLSHKTASIISEKYYAEKGNKYFENPVGTGPYKYKDWKIGDRITLEAFPEYFKGEPAIKYIVVRAVPEENSRVIGLETGEIDMTADLGAESRKIVLDNKDKINYLESSGISVNYVGINTDKGVLKDRDVRRAIAMAINRDDIINSIMMGTVDKANSFIAPGTFGYSPDSKVLDYNPEEAKRIIQEKGLTGTKLSLGVSNSPVRMQMCEIIQAQLKEVGIDVSIESLEWGTFLAATGRGDLDMFTLGWGPSTYDGDYGFYPNFHSSQLGGAGNRSQYVNPAMDKLLDDAKKEVDQNKRKELYKEVAEIIYDDVPVIPMYYSNNTVAAVKGIEGVKATSYINFDELSFKK
>NZ_CP028105.1|WP_005981351.1|443383_444436_+|galactose-mutarotase
MELTVRNWGKTKFNEIVKLYTLKNNFLEVEILNYGGIIRKISFPDKNGKVENIVLNLDSISDYEERSPYFGAVVGRNAGRISNAELKIKDTIYKLNANSGKNNIHGGINNFSHKIWNAEEIKGNDFIGIELTLNSPHLEEGFPGNISITVRYILKNDELSLEYSGITDRETYMNLTNHSYFNLSGDFKRDIRNEYLKLDSDAFIAVDEATLPVKISETHNTPFDFHEFSLLKTSLDSEYPQIKIVNHGLDHPFILNQNRDIPAAQLKDDISGRMLKVFTDQPAVVIYTGNYLHEIGKLSDGSDCKKHMGICFETQDYPNVLSFLPEKGKIYTPSNSYSQKTIFKFLINKN
>NZ_CP028105.1|WP_005981349.1|444450_444726_+|hypothetical-protein
MQDIILYILIISVGYFITKKGWIPKIIDRKVGLLQTLSLFFLLGVMGYKIGSDDKIIANFHILGLDSIIVAVCAVLGSILLTHIFYRGGDK
>NZ_CP028105.1|WP_005981347.1|444725_445328_+|lysine-exporter-LysO-family-protein
MLGIALSVIIGALLGFFCKSPLVLAHADNLIKFGLCLLLFFVGIDIGKNQSVFEQLKTLNKKVLLLPFVTIIGSLLGGVLASFITTLSLGEGVAVSSGMGWYSFSAIELSKINAQLGGTAFLSNVFRELLAIFTIPFIAARIGSFQSVSSAGATAMDSVLPVINRSNPPDISIIAFYSGLVITIVVPILVPAVVAIFNLG
>NZ_CP028105.1|WP_106878540.1|445721_449909_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYIKYEVIKIMSENSARKNKMKKKILSPLLTVGIMSICIPLEDAWASSPVDYVGTVNLPASIGTGKETANDGWTVTIGNGSTPTKVTQDGKTVISVNDNAKITVKTDAAVEGNSNSNSEGHFNSGPNVIEFNSKSTLTIEAGGTVQQLGSTTNGEAINAHGFGNTIINNGTIHSNNGAALWFQDTSISVSVADRNKVVNHGTISTSKGDGYNVFGSSRGNAGPGLVFDNYGTIKGSLKFGSGDDSLLFGPGSKITGNVDGGGGTNDLTLDANSGESATLAGSVLNFSSITKDGEGAWAILGSVPAVPGDPHPSSPINGSLKEVDSLVIKKGLLSLVGANPDFNGTVNIDAPGQLSAQAQGINGATNMTNNGKLIFEQPIDDSYTGSAITGTGQVVKSGTGSLTMSSGTANTYSGGTFINEGALVVDKDSDLGAVSGSITLGTDNTAGGTNGTLRFDSSFNLETTRAITLMEGGGTIDTQGYITNIDQTIAGTGTLTKTGSGTLTLNATNSYIGGTVLQEGVLGINSDSALGNSNSRLVMYDTTTLQLNGNVDSNRLVTLAGGPSSMMTINTQANNGAFNGNIDGLGSLVKTGSGTLSLYGNNLYQGGTKVKEGTLAINSDASLGGVNGLLELERNTTLKLDGNVYMNSRPVIIGGGDNATLPQSVTIDTQGYTGVISQNIDQNAGEKTELIKTGTGTLGLYGNNTYSGGTWVKNGTVAITSPLSLGKSDVQLGDHEDTSLDGSGSTQGTLRADADIDFRGSGKSIILNKGGGTINTNGNAVILDENSLKDGIAGTASDLGRDLHKTGAGVLTLLDNQYYSGRTFIDQGILRLDAVEPNTPLSNSKGLLNTSEVTIAAGSRLEGQGIVGNSMNVQLNNSNAPVAANLTTIINNGTIAPGLERFNNTFDSTDSQFVPLTLAGNYRAGKGAAVEIHTELLDDISNHGSLTIDGVIDSASDKSGTGVVVIHQGGNGATTNHGIEIIRLRGNNSGATQADLIKQLDENFHLVSDFKTSKGQNAVVAGAYSYIMESDKDWYDNPNNQVGLFLRNATNNDGSLVPHPATPLYETYSLILGSLNKLPTLEQRIGHRPWLNDKNGYETGYDRGKTEIYPNNVWMRVEGMKGYYEPHLDSNKGSTSSYRLRFSRVNVGVDMPIYENADGSRLIAGINGNMSRAWSDIDSIHGSGDITTTGYGLGATLTWYNHNGFYTDAQAWHNWFKSDIDSNTITTDLDQVKGNHAKGYALSLEVGRIFDLNQHWSLTPQAQIAYSRVNFDSFTDIQNSVIINEKDYVGLEGRLGLALNYEKSHLDSSGKMRRNKLYILGNIHQEFKGDSTVSISGVDYESKMNNTWVSVGVGGSHNWDNDRFSIYGELSLASSTKKFGEEYELAGEIGLRIAF
>NZ_CP028105.1|WP_005981343.1|450174_450435_+|hypothetical-protein
MSIIENWEEQMYDSTFDTIYEALIEEYKRGDLTVEELDRNIAEQQQILLNAFFEGETKSVYCNAVVDAHQFVRSLIIQGKLTVENQ

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Crispr_ID: NZ_CP028105_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_4

2077157-2077230

Orphan

Consensus_repeat	Method
AAAATATTATTAAAACGTTTTTAATAAT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP028105_4

>merge|NZ_CP028105|4|2077157-2077230|CRISPRCasFinder
AAAATATTATTAAAACGTTTTTAATAATTAAGAAAGGTTTTCTCTTAATTTATTTTTAAAATATTATTAAAATG

>NZ_CP028105|4|3|2077157-2077230|CRISPRCasFinder
AAAATATTATTAAAACGTTTTTAATAAT	TAAGAAAGGTTTTCTCTT
AATTTATTTTTAAAATATTATTAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005979489.1\|2078717_2080253_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP028105.1\|WP_005979496.1\|2083633_2084044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005979469.1\|2060314_2070334_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP028105.1\|WP_005979491.1\|2080265_2082293_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP028105.1\|WP_005979473.1\|2070753_2071167_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005979482.1\|2073089_2074070_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270238
NZ_CP028105.1\|WP_005979506.1\|2087379_2088564_-\|YgeY-family-selenium-metabolism-linked-hydrolase	unknown	unknown	gnl\|CDD\|183836
NZ_CP028105.1\|WP_005979476.1\|2071175_2071538_+\|adhesin	unknown	unknown	gnl\|CDD\|370466
NZ_CP028105.1\|WP_005979480.1\|2072352_2072997_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP028105.1\|WP_005979486.1\|2075963_2076923_+\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240650
NZ_CP028105.1\|WP_005979479.1\|2071753_2072038_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028105.1\|WP_005979471.1\|2070390_2070717_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005979500.1\|2084634_2085561_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP028105.1\|WP_005979477.1\|2071568_2071757_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005979504.1\|2086011_2087349_-\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_CP028105.1\|WP_005979502.1\|2085614_2085992_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP028105.1\|WP_005979498.1\|2084102_2084519_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NZ_CP028105.1\|WP_005979488.1\|2077383_2078682_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224967
NZ_CP028105.1\|WP_005979484.1\|2074087_2075974_+\|TRAP-transporter-fused-permease-subunit	unknown	unknown	gnl\|CDD\|273983
NZ_CP028105.1\|WP_005979494.1\|2082321_2083587_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005979489.1\|2078717_2080253_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP028105.1\|WP_005979469.1\|2060314_2070334_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.35861e-37
NZ_CP028105.1\|WP_005979491.1\|2080265_2082293_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP028105.1\|WP_005979482.1\|2073089_2074070_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.94824e-101
NZ_CP028105.1\|WP_005979506.1\|2087379_2088564_-\|YgeY-family-selenium-metabolism-linked-hydrolase	gnl\|CDD\|183836	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase.	0
NZ_CP028105.1\|WP_005979476.1\|2071175_2071538_+\|adhesin	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	1.86725e-10
NZ_CP028105.1\|WP_005979480.1\|2072352_2072997_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.26721e-34
NZ_CP028105.1\|WP_005979486.1\|2075963_2076923_+\|hydroxyacid-dehydrogenase	gnl\|CDD\|240650	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	2.71137e-142
NZ_CP028105.1\|WP_005979479.1\|2071753_2072038_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	1.02816e-10
NZ_CP028105.1\|WP_005979494.1\|2082321_2083587_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP028105.1\|WP_005979500.1\|2084634_2085561_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.00423e-63
NZ_CP028105.1\|WP_005979504.1\|2086011_2087349_-\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	3.30704e-173
NZ_CP028105.1\|WP_005979502.1\|2085614_2085992_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	7.36465e-65
NZ_CP028105.1\|WP_005979498.1\|2084102_2084519_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	2.76201e-06
NZ_CP028105.1\|WP_005979488.1\|2077383_2078682_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224967	COG2056, COG2056, Predicted permease [General function prediction only].	0
NZ_CP028105.1\|WP_005979484.1\|2074087_2075974_+\|TRAP-transporter-fused-permease-subunit	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	2.51791e-179

>NZ_CP028105.1|WP_005979486.1|2075963_2076923_+|hydroxyacid-dehydrogenase
MSHKVLIPQAVAKEGVELLKSYGFEIKHGSGASEEDLIKDVADCDAILLRTAPCTEAVLKAGKNLKIVARHGAGYNNVDLEAAAKLGIWATNAPDSTTNTVAEFVLGAILAVSKRIFLMNKKIKEGDFFFKNNHKGMDLTGKKLGVVGFGRIGRKVAYKAFYGLGMEILAYDPFLTKENCPDYVTICDWETIFKESDIISLHMPLIKENIGCVGKKEFTNMKKSAHFINCARGEVVNEKELIEALKTEEIAGAFLDVFEQEPPLEDNPLLSMDNVIVTPHMASNTEECMILMAVQAASEIVKVLSNEKPCWPVNNPVGK
>NZ_CP028105.1|WP_005979484.1|2074087_2075974_+|TRAP-transporter-fused-permease-subunit
MEGKNKNSQLSKILLFIIGLALALFHIYTSYFGALPSYQHRVVHLALSMMLVPLCYNLFNIKNEKIKNVFSIGIIAVVSVIGLYSYSIADTMWKSSGTMSGLEIILATILLILLLSFTWKTVGAAMPIIAILCILYALFGPNLPRSIAHRGYTWVRITEVLFKGTNGIFNTPLGVSSIYVSIFVIFAGVLEASGAGDIFIRLTQALLGGFRGGPAKVAVVASSLFGTISGSAVANVVGTGSFTIPLMKKSGFDSEFSGAVETAASSGGQLMPPVMGAAAFIMADYIGSYQEVLTAAIIPAILFYIALFIMIDLEALKKDLKGQSKDELPNFMEELKKGWLLLMPLVLLVFLLVGVRYSAQKSAFFSIIFLVVIMLVYPGKKRSVSEILHLIASSSKGMVSVALTTGTAGIIVGMLMLTGIGYKLSSLLISLSQGNVMLLLILTMVTSVILGMGMPTSAAYVLLATLIVPALENLGIAKIAAHFFVFYFGIMANVTPPVAVAAYTAAGIAKGDAMKTGFVAWRLSLAGFLMPFMFCMNPALLGKGTNGEIILAIMSALIGAYGLATAVQRYFKGNLSWPKTIVVLLGSVSTMMPGIKSDIFGLICLGSIYAIQIIKSKKSYDEGEVNVA
>NZ_CP028105.1|WP_005979482.1|2073089_2074070_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MKNFKISKVIGSFILLLVLGITTYAAGVRYISIATSSAGGAFSIIGTAMSDIINKNDPNVSANIEITGGSSENILLAKNKNVELAMTASDVLALALEGKGSFEGKKIDKDDLRGVMGGHMTTLQVYTLRDGKIKSFKDLKGKKIAVGPAGSVAGDAMKTIMDAYGYEINKDWKPEYLSHGDGAEALTDGNVDAVCIMSTLPASPVTTAAASKPIRLLELEKEYFDKIMTECPYYIPAKIDADVYNGQDEKVEYTFGSASILITYKDMPEEDIYNMAKALFENNELLVAAYPQCNEWNIENATRGLEGLVEMHPGVIKYLKEKGVMN
>NZ_CP028105.1|WP_005979480.1|2072352_2072997_+|GntR-family-transcriptional-regulator
MLEENFQTASDIAYRIISQKILDGEFSPGMKLSRRKMAEVTGVSVIPVIEALKKLEENYLVESKPQWGSYVIVPTKEKIIENYQLREAIECQSARILSKTMTGEQREELMAIATELDTIPYTDETIFDSRNSHILFHAKLTEFTGNSLLINTLKKINMFWILCKAIGTNAPKATYPRYWHRYLVDTIAKGNPDETEKLMREHVNDSLDLIIANL
>NZ_CP028105.1|WP_005979479.1|2071753_2072038_+|HU-family-DNA-binding-protein
MKETEIIREYKEKRKLKNLKTAKEKIEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERIFNNPRTKKIEKISPINKIVFKQGKILKKKFNEEI
>NZ_CP028105.1|WP_005979477.1|2071568_2071757_+|hypothetical-protein
MNTKDYRLYGCHFTKEEYGFIKRKLKKLSNRNSETKITDTQVLLELFKLALKEEKEEKGQEI
>NZ_CP028105.1|WP_005979476.1|2071175_2071538_+|adhesin
MKKILVGCILAVSVASYSATDVMSTLEQLELNLQQLEAEEKAMYNQRKAEAEEAERTLANQRKMYAEISEKEKKISSVKDNKFYKDQYQELAKKYGEAKKELEIDMKKQEEIINIFEAIK
>NZ_CP028105.1|WP_005979473.1|2070753_2071167_+|hypothetical-protein
MQIKLTKEETEKLGENKDGIAQLLVRKAILAEMEKKKYTEEEKKYLEEMKINIEVEFYLNSIAQKAVQIYDYELLEVYKNNSELLKDKNTVEIYPQLQQALFNKKLGEEKVKVINEIVEKYKINDVLKEYIKPEEEK
>NZ_CP028105.1|WP_005979471.1|2070390_2070717_+|hypothetical-protein
MDEKTEKRGRPLGSGNKKDVILGIRVSKEEYNIIKEGLAKLKGKYKTNKNIILYLFKKYNILEENNKKSDKMFLKIIIEEMKKKKYTKEEKEQLIKEIYKTIENKDEE
>NZ_CP028105.1|WP_005979469.1|2060314_2070334_+|autotransporter-associated-N-terminal-domain-containing-protein
MRKNDIEKSLKRFLKRKISYSLSLLIAFMITGGISFGAGITTEEIQETKNDILTRIETEREEIKRKIAENERLIKEYNSDFVELVRKGDFYSKPLIPSTQVFFSYQYLDNGKTKDRTAKEFKETIDAVNKHYGTTSGESLLKSTGNIGKDKVLSGNGVVVDNEVFRETIEVGANIKPVEPVLPTISPNVSVNVSAPVVNLGTLPGTVNPIMPSVPSVIAPTITAPSTPGGINVNVSTPAAVAKITVTAPTAKTPAIPAEKNIEIKTPTLPQGYEPTMITLPTAPTLPVVVPVNVSSPSIAGSGANPSVQYFWWNGNNGVISQISLKSGEYIINGNSGNYSVGVTGYDAEAFPGTTPSGTKPTENKVYNVPQQFFHTLLNVPYSYYGENTKIVFNSNNAKLIDLETEGMVNGNLDNRVTEGLITSATRDRLREYQTYTGIKGEDGTELLFVNKGEIEINGTGSAYFFTTSHTNGNYRTNYLDNEGTITVNGDKSIVYMHSPDTSQSKAYIYSNGPTGKIYVDGVGASLMQWAYSNLPHNRAAFVNEGTAEIRGAEAIALYMSNNSAFNNGHAAYIKKAIDLLGDKSIGMVAQNTNIINEKNIVKFNIGNKEQTIVKGNSLTSIFTNADGTPRANDPTLVEQGIGILMDNSSTTKTAAQIEIGKYSYGGIGIFGKQGTIEILAPSGTSGEKSNITISDGEKNTGIIAKGGDVKFNGDILIKGGKDNRAAVAESGKKITITGNVTAGSNDKKIEDSVILYAKDNGTVITVENDKLNLKLSGDSTGIFATSQGKVAANRTSLTLSQPDASGNIPEPTAEVNIYVEGKKDTDGKIKGLGLYTSSGGNISAKNTYVKVKNGAVGIASVGNGSKVDLTGGIIDYEGNGYAVYTSDNGEIDLTNGEIILRGKATALELDFAGGVNPIKLQGARITVMSNDAIIANLKNAGVLNIADLESNISTNLGGVTFKNGTNGSEVFDKYKVAAIDGGTLNIDTNIDKGDTSTSSPGFYYYRRFLGQRLKISVLDNVTVNASINSAYASEYFKGQVVGLEINSSSSATGISDTQINLGQGAKIVASRLDSGSGAIGAYINYGEITLDTGSSIEVEKTLKNENGVGIYAVNGSKVTNKGNITVDGNYGIGIFGTAYRTDSSNIPVVNEFGGKAGEGELEINNAQNITLLGMGTVGIYAKNNNGSVSSEKTKVNNTGNITVGDSNTSTSVGIYGEKAEISNTGTISVGAGGVAIYATTGSKVTNLGTLKLGSDGIGIMADGTSTITATNVILGSNAGTDDSGKTGVFYKGSASGIDNKSIALNVNAENLDKGTAIYVENMNVTSSGALNVGKEGIGIFVKGNSTQTGTNTGTIDLTAGKNDAVGMYTTTANILNNTGGSINVNDTSQIGMYAEEANHKATNKGTINLNADSSTGIYVKLGAVAELDTGNSIVFNKKFSVGVFAENATVNFKDDLTFANNNENKNIYVYGKGATVGIDPGKIVTVDGMETPTTAGNKTVGIYLENAGTGSTFTSNTTGQLVVQREAVGIYSKGNNTLNVNVTATGEKTTGVFIDGGSTITGTVTAQGTSTAGAVGVYGSGGAVTIGAGGLALKTDTGKGTGMYLTDGAHAAGGKITVNNTATVDNIGVYYSKGTASGTVTNGAEVELTGNKSIGIYAADGINLVNTKNITSTGLNNNIASYVGGNSTLTSNGNITMTGTDGNIGIYTGKGSGINNGAIDLTGSIGRSSAGMVAKTDTSSDTASVENKNRITVGSNLGMYVAGNGTSSGKNTGTITATTGTGVYVNGSGNSFNGTGGTITSNAVGIYLKDTGANKITAGTLNIASGGVGVFGENAKIDFAVNVTGTGAVGVAAKSGTVISGNITTGQGSVGAYLLDGTVTFNGANITTGANSSSGTSVGVLFDNTIAGPYTMNNVSVNAKNGVGIYLGGAGMTLNHNGTVTTEGGIGIYVKNGTTLTTGESTLNISNGGTGVYIDGGIANLGTSGNLKFNFGTGGGIGVFNNGGTLNLGNNITAIGSGSLAATSNGSLISSGNLNIGEGGTGLLGTYDNGTTTLKNITNNGGTITAHTGGIGLAAIKGTSTPTAKVTINNSGIINANGISNGVNPSPSIGIFTDVADVINTGTINVGSNGIGIYSNHNGVLTSVKNDNMKMTGTDGIGVYLKGTTAGLTSNNINSTGSRNTGVVLEGVTSAIDAGTITLGNESIGVLATNGTNSLIDGTISVGASSGTKSAIGIVANGGSNVTVAGTSTITAGNGGIGVYAEGAGTIVTVADTGNITVGTDGIYMYSKGAALTFTGNITADNQIGIVADGGSVTSSGSSSITAKNGGIGAYVKNAAPAFGTTAITVQSGVAETTSAPAKYSVGIYYDSVASAGIIPTVTQTGNYTIGRVLNKSTGTVSGGISIGSSGNNQVGVMAKENSNLTVTGGISVIGGNSNIGVYGKSSAIAVNGNISVASAASLTNSSIGVFIDKGIYNGTTGDISVGNNSIGIYGKDLNGGSISQTGTVMTVSNSGVGIYGTGTGNGTENINLTMTTGITLGNNNSIGVYAKNINTSVTGDIHVGTNTSIGIVSEGNGNVTYTGDLAIANKGTGEKDTGSVGIYKLNGTGTINTLAGNWNVGNNGYGIFLKQAAGQSATINNNADMTLGTAAVGIFSSGKNTVNNTGDIIVGKTDVKGDHDNIENHLNSIGIYATGGTKVNNAGNITVNYDHSVGIYGDGAETRIQNTGTINVDGGGVGILVRDGAVAVNAVGGNIILGSTSAPDPCTAITVGMAAYSGARIENAGTITVNEGVGMLIGQGATFNNSGTIYLKNGIGIEGPGAVNNYGDIVILPGGNGTPGANVGVSKAEVGSVKIESDGTITINDKYVSIGGTLSTAGNIVVNGAYVDVTTGTPLFNANSVSGEVKLLPNFAATGNGISYEIEGFINTAMGTITGNKLTPVTSPLFIAKVTDKGSLVIAKKPYADLTIGDQFDALDKGLDNILKNSGGNGKDAEILKGLNEYLEGLPADQFERETSLKLAETRGDIYATIQGRMQDINRAFDNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGVLYMKEKEGTEYGSKYGYTLGFTGSKFDFDDGGSKEDVYSLRVGAHRVKNLSEEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVALDNRLTKVIYTDLSRQLDVYADLDLEYGKVDDFKESAGSKGGLEVQIKDNDYLSAQAGAGVKASQRIYAGNDVSVKVTADVKYAYELGDNYDGNKARLKNGREGYYSLITPEESEGKLTGKIGLTIEKANHMGVTFEVEAADEGNRKDSSIKYGMRFNYKF
>NZ_CP028105.1|WP_005979488.1|2077383_2078682_+|TRAP-transporter-large-permease-subunit
MLLNPVILSVLTMIILCLLKLNVIFSMLAAALVAGITSGIGMPETMKILIGGMGGNSETALSYLLLGTLAVAINSTGVASIISKKIAGIVSGRKRVLLLLIAAVACFSQNLIPVHIAFIPILIPPLLKLMNKLKVDRRAMACSLTFGLKTPYVVLPVGFGLIFHTIVKDQISANGYNIELGEVWRATWILGLAMVIGLFIAIFITYKKDRDYEDLPLKGMEEVESEKMEKKHWVTLIAALTAFGIQLYTGSLPLGALAALGIMLVFKVVKWNELDNVLNDGLLIMGLIAFIMLVAAGYGRVIRETGAIETLVTGVVGICGGSKAIASLAMLTVGLFITMGIGTSFGTVPILATIYVPLTIEMGYSSAAMIVLITAASIIGDAGSPASDSTLGPTSGLNADGQHEHIRNTCMATFIHFCIPLFIAGFIGSLIF
>NZ_CP028105.1|WP_005979489.1|2078717_2080253_+|histidine-ammonia-lyase
MRLVIGDRRLTLEDLINVTRKGYKVEISEGAYKKVAEARELVDRYVKEKKVSYGITTGFGKFSDTVISEEQTGLLQKNLIMSHSCGVGNPIPVDMAKGIMLLRIVNLSKGHSGVRKIVLDTLVDMLNKDVTPFIPEKGSLGASGDLAPLSHMVLVMLGMGKAYVNGELLDGAEAMKKAGVPVLEELSSKEGLALINGTQVMTSIGAHVTYDAINLMKHLDIAGALTMEALNGITCAFDHRVHEVRGHQGQIRTAENFRNILKESKCTTKQGEMRTQDPYTLRCIPQIHGASKDALEFVREKVEIEMDAVTDNPIIFCDTDDVISGGNFHGQPMALPFDFLGIAVSEMANVSERRIERLVNPHLNCGLPAFLVENGGVNSGFMIVQYSAASLVSENKVLAHPASVDSIPSSANQEDHVSMGTIAARKAGEILKNARKVIAMEILSACQGIDLKKVNKDLGLGTEKAYTAVRETVSYYDKDRVMNLDINAVEELIERNKIVENVEKVIGELKI
>NZ_CP028105.1|WP_005979491.1|2080265_2082293_+|urocanate-hydratase
MINKDIYNAMTIKLTAQDIPMKMPEMDPKIRRAPKRVVHLEKDEIELALKNALRYIPEEYHEMLAPEFLNELMEHGRIYGYRFRPEGRIYGKPIDEYTGRCTEARAMQVMIDNNLDFEIALYPYELVTYGETGQVCQNWMQYRLIKKYLENLTQDQTLVVASGHPTGLFRSNPYAPRAIITNALMVGEFDDYDNWARAAAIGVANYGQMTAGGWMYIGPQGIVHGTYSTILNAARLFCEVPKDGDLTGKLFVTSGLGGMSGAQGKATVIAKGVGIVAEVDISRIHTRLEQGWVDKIARTPEEAFNMAREKQEAKVPYAIAFHGNIVDLLEYADKNNIHIDLLSDQTSCHAVYDGGYCPAGITFEERTRLLAEDRETFNKLIDETLRRHYEVIKKLTAKGVYFFDYGNSFLKAIYDIGVKEISKNGRDDKGGFIFPSYVEDILGPELFDYGYGPFRWVCLSGKKDDLLKTDHAALELVDPNRRYQDRDNYMWIKDADKNGLVVGTQARIFYQDAMSRTRVALKFNEMVRNGEIGPVMLGRDHHDVSGTDSPFRETSNIKDGSNIMADMATQCFAGNAARGMTMIALHNGGGVGIGKSINGGFGMVLDGSHRVDEILMQAMPWDVMGGVARRAWARNPHSIETVIEYNNDNKGTDHITLPYIANDDLIKKLVDGKIK
>NZ_CP028105.1|WP_005979494.1|2082321_2083587_+|imidazolonepropionase
MKADLILYNIGTLVTSRELDKKDFDNGMENIEILKDAYLVVEDGKILQIGTGKVPESLKSEWTKLIDAEGKVVTPGIIDSHTHLVHYGSRENELPMKLKGVPYLEILRNGGGILSTVRATRKATRYELFDKAYEVLDRMLCFGVTTVEAKSGYGLDLENEIKQLEVNKKLDEKHPVDIISTFMGAHAIPEEYKGNSQGYMEELFKMLPIIKERKLAEFCDIFCEDEVFSIEESRKILNEAKKQGFMLKIHADEIVSLGGGELAGEVGAVSSEHLMAVSNEGIKSLKENGVIADILPATSFNLGKAYAPVRKMINEGVNVAVSTDYNPGSCPCENMQLVMQICSSQLRMTPAEIFKAVTLNGARAVKREDNIGSLEKGKKADFVIFDTDNLNYIFYNFGINHVKDVFKEGKQVVKNKHVCYK
>NZ_CP028105.1|WP_005979496.1|2083633_2084044_+|hypothetical-protein
MNKKEESKTIGSSFCFSVEYSKRIKTYYQGDDCMQIFILIISNIINLILGFILQPWLELSFGSINGKAIGSYEILEAEVEAHPALGWATVVIYVVIFLLLNILFLKWSKLKFFKYIKYNCLAFVIGFILSIGGRIF
>NZ_CP028105.1|WP_005979498.1|2084102_2084519_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MDLLKEFHKIMEEQSDIALATSVNDIPNVRIVSFYFCPDENILYFGTFKDEVKTKEFEKNNKVSFTTIPKESEEFARTNCGIVKKSDLPMSDFKQVICEKVPGYKEIIDNFEDKLVLYEISFKEVAITINYDEYKIAL
>NZ_CP028105.1|WP_005979500.1|2084634_2085561_+|YafY-family-transcriptional-regulator
MKIDRLLSIVIVLLEQNKISATKLAEMFEVTTRTIYRDIETIQAAGIPIVTYTGINGGIGILEKYKIDKKFFTKEDITTLMTGLGSISSSVSNVELTKVLTKLQSLIPEEHIQEIKLKSGQIIIDLTTWSGNKKLQSNLNKIKEGLNERKYLEFHYLDGSGRSSKRKVEPYQLLWKEEKWYMNSYCTLRNDFRLFKLARISYLKVLDETFTLRKFDIKDLEMNWIEKRIINIKLLADISLKERILERCEEDRITYCDENKMIVDFPFVDDDFDYEELLSFGNRCECLEPAEVREKLIKMIRDTMKIYE
>NZ_CP028105.1|WP_005979502.1|2085614_2085992_-|RidA-family-protein
MKKIIHTEKAPAALGPYSQAVEANGTLYVSGQIPFVPETMTLVSDCVKAQTKQSLENIKAILEAAGYTFKDVVRAGVFIKDMNDFAAVNEVYAEYLGDVKPARACVEVARLPKDVKVEIEVIAVK
>NZ_CP028105.1|WP_005979504.1|2086011_2087349_-|dihydropyrimidinase
MLLIKNGNILIGNKIEKLDILIENEKIKKIDKDISEDICSNIFDAEGKYIIPGGVDVHTHFNIDVGIISADDFYSGSAAAAFGGTTTIVDHPGFGPKGCGLDYQINKYMKDAENSNIDYSFHGVVQEVYSDIFSQMEDLKKRGINSVKIYMTYAYKMTDDDVLRMFEYAKKLDMVVCVHSEDDKGIEFLRGKFTEENKLTPIYHAESRPDFIEGCSVYKLLSYAEITGFEKLYLVHISSKESMEIIEDFRRRGVRFFVESCPQYLFLTEEKYMEENGLDYILSPPLRKKEDTEYIKKALASNRIDVIATDHCSFTLEDKSKGKNDFKLCPNGIPGVEERIPLLFNEVINGRLSVETFLKTACENPAKIFGLFPKKGILTKGSDADIVIFEKKNSKIENMHTAAKYSCYENFPLSAVIDTVILRGNIIIRNNELIMKSSGKFIKRI
>NZ_CP028105.1|WP_005979506.1|2087379_2088564_-|YgeY-family-selenium-metabolism-linked-hydrolase
MLTNERKEQIVEVLQNLIQRRSYSGEEKEVAEYIKKLCLEVGYDTVHVDKYGNVIGSVKGKYEGPKVLMDGHIDTVPVDEEKWTKKPFAGNIEDGKLYGRGTTDMKGAVCAMLLAGAYLAQDLKKEFAGEIFIAGVVHEECFEGVAAREISKYVKPDYVIIGEASQLNLKIGQRGRGEIVVETFGKPAHSANPEKGINAVYKMMKIIENIQKLPMTHHDTLGYGILELTDVKSSPYPGASVVPDYCRATYDRRLLVGETPESVLAPIQKLLDEMAKEDETLKAKVSYARGVEKCWTGATIEGERFFPGWLFEEKDEYVQKALKALEGIGQTPTITHYNFCTNGSHYAGEAGIKTIGYGPSRENLAHTIDEYIELDSLYNVTEGYYAILKAYLTK

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Crispr_ID: NZ_CP028105_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_5

2353646-2353754

Orphan

Consensus_repeat	Method
AAAAGAAAATAAGAAAACTCAAAAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028105_5

>merge|NZ_CP028105|5|2353646-2353754|CRISPRCasFinder
AAAAGAAAATAAGAAAACTCAAAAGAAAGCAGCTGAAGTAATTACAGTATCTGATGAAACTATGCTGAAAGGTACAGGAAAAAAAGAAAATAAAAAAACTCAAAAGAAA

>NZ_CP028105|5|4|2353646-2353754|CRISPRCasFinder
AAAAGAAAATAAGAAAACTCAAAAGAAA	GCAGCTGAAGTAATTACAGTATCTGATGAAACTATGCTGAAAGGTACAGGAAA
AAAAGAAAATAAAAAAACTCAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005976259.1\|2346313_2347684_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP028105.1\|WP_005976249.1\|2341089_2342349_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP028105.1\|WP_005976251.1\|2342388_2342856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005976286.1\|2361590_2362685_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP028105.1\|WP_005976261.1\|2347680_2349558_+\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|225815
NZ_CP028105.1\|WP_081583123.1\|2345279_2346308_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|273100
NZ_CP028105.1\|WP_005976269.1\|2353880_2354477_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP028105.1\|WP_005976253.1\|2342898_2343744_-\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|320695
NZ_CP028105.1\|WP_106878578.1\|2359306_2360377_+\|EpsG-family-protein	unknown	unknown	gnl\|CDD\|379716
NZ_CP028105.1\|WP_005976247.1\|2340488_2340941_+\|SoxR-reducing-system-RseC-family-protein	unknown	unknown	gnl\|CDD\|377263
NZ_CP028105.1\|WP_005976255.1\|2343944_2345135_+\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP028105.1\|WP_005976276.1\|2357291_2358488_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP028105.1\|WP_005976271.1\|2354495_2354987_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379658
NZ_CP028105.1\|WP_005976278.1\|2358512_2359310_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NZ_CP028105.1\|WP_005976288.1\|2362705_2363950_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|182940
NZ_CP028105.1\|WP_005976263.1\|2349578_2350154_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|274630
NZ_CP028105.1\|WP_005976290.1\|2364193_2365228_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP028105.1\|WP_005976265.1\|2350150_2350417_+\|DUF3343-domain-containing-protein	unknown	unknown	gnl\|CDD\|378728
NZ_CP028105.1\|WP_005976284.1\|2360397_2361594_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP028105.1\|WP_005976273.1\|2355979_2357290_+\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005976259.1\|2346313_2347684_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP028105.1\|WP_005976249.1\|2341089_2342349_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	7.61396e-37
NZ_CP028105.1\|WP_005976247.1\|2340488_2340941_+\|SoxR-reducing-system-RseC-family-protein	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	1.02641e-21
NZ_CP028105.1\|WP_005976286.1\|2361590_2362685_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	3.30485e-161
NZ_CP028105.1\|WP_005976261.1\|2347680_2349558_+\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|225815	COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis].	5.73255e-90
NZ_CP028105.1\|WP_081583123.1\|2345279_2346308_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|273100	TIGR00476, selenide_water_dikinase, selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring well but not aligning to the beginning of the model is likely to have a selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyzes a tRNA base modification. It also contributes to selenium incorporation by selenium-dependent molybdenum hydroxylases (SDMH), in genomes with the marker TIGR03309. All genomes with SelD should make selenocysteine, selenouridine, SDMH, or some combination.	1.42431e-149
NZ_CP028105.1\|WP_005976269.1\|2353880_2354477_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	9.71743e-59
NZ_CP028105.1\|WP_005976253.1\|2342898_2343744_-\|zinc-metalloprotease-HtpX	gnl\|CDD\|320695	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	3.0215e-160
NZ_CP028105.1\|WP_106878578.1\|2359306_2360377_+\|EpsG-family-protein	gnl\|CDD\|379716	pfam14897, EpsG, EpsG family. This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.	2.37542e-07
NZ_CP028105.1\|WP_005976255.1\|2343944_2345135_+\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	3.26688e-86
NZ_CP028105.1\|WP_005976276.1\|2357291_2358488_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	9.23036e-68
NZ_CP028105.1\|WP_005976271.1\|2354495_2354987_+\|thioredoxin-family-protein	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	3.78055e-19
NZ_CP028105.1\|WP_005976278.1\|2358512_2359310_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	2.56238e-17
NZ_CP028105.1\|WP_005976288.1\|2362705_2363950_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|182940	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional.	1.79714e-159
NZ_CP028105.1\|WP_005976263.1\|2349578_2350154_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|274630	TIGR03527, selenium_YedF, selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.	2.48938e-76
NZ_CP028105.1\|WP_005976290.1\|2364193_2365228_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.2685e-17
NZ_CP028105.1\|WP_005976265.1\|2350150_2350417_+\|DUF3343-domain-containing-protein	gnl\|CDD\|378728	pfam11823, DUF3343, Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.	1.03323e-14
NZ_CP028105.1\|WP_005976284.1\|2360397_2361594_+\|hypothetical-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.9281e-18
NZ_CP028105.1\|WP_005976273.1\|2355979_2357290_+\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	1.86773e-92

>NZ_CP028105.1|WP_005976265.1|2350150_2350417_+|DUF3343-domain-containing-protein
MIKEETFLLLATDSTHLIIKSEKLLKENGIECRIIPLPSEVKATCGLSIRLELEYKERADEILKSDGIELEKYSVIKKGLKKHIEKIN
>NZ_CP028105.1|WP_005976263.1|2349578_2350154_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MIKVNAVGQTCPIPIIMTKNALKDIEEGEVEVLVDNKISLENLQKMSKEMGYDYSIAETGEVFRIVINKIKEEVEEFDDEDNTVVVIDSMYMGKGDPELGRILMKGFIYTLTEVEVLPKTIIFYNEGVKLAVENSESLKDLKNLEERGVEILCCGTCVNFYGLTDEIKIGSITNMYNIVNKQMYARRVIKP
>NZ_CP028105.1|WP_005976261.1|2347680_2349558_+|selenocysteine-specific-translation-elongation-factor
MRNIIIGTAGHIDHGKTTIVKGLTGKDTDTLPEEKARGMTIDLGFTFFTLSNGRKVGIVDVPGHEKFIKNMAAGVTGIDLILFVIACDDGIKPQTLEHADIIKILGVKKGLILLTKRDLADEERAAQLKEDVRELFKNSYLENSKILEISTKDAQSFEKLKEVLEKEILEIEENRDEIKDFRLDIDKVFSIKGFGTVVTGTSKNSKISIGDTVMIYPQQKEVKIKGIENHGNKVETLEAGNRCALNINMDSKEIKRGNIISKKDSLIISNRLDCVFTLLKRSSNFKNNQRVRINIGTEELIGRVKIFLEDEILSGDKKYVQIDLEKESAFSVGDIGIVRSFSPVETIGGVEIINIPKERVKRKDLKYLERLEILSSKNKYKKIESIVLNNENIFTDKESISLLLGEKISEKEMENSQNIEKISDNIYVNTERLENFKNKILEYIEQYHEKYPLSVGIKRSELKNRFFENFSIKVYNIALEYFIEKNTIEVLGEYISKKDFKIKLNKEQKKIKEDIFSYYKKNGFTPQKIEDTVKIFKDETLFAEIHSYMLYNSFLAELAEGNFMLKGFFLESEKKIKEYLEKNRRITLAEARDLLQINRKSILLILEKLDENGITKRVGEYRELK
>NZ_CP028105.1|WP_005976259.1|2346313_2347684_+|L-seryl-tRNA(Sec)-selenium-transferase
MEKNLFQKLPKVDILMKSEKLEEISKKMSYHNYYQAVKDGIEFFRNKIKNREITDFTEDEVISKIKEISGIKSRPNLRRVINGTGTIIHTNLGRSILNEKITEDLGEILLNYSNLEYDLETGSRGSRYSHIEKLICDITGAEGALIVNNNAAAVILCLNEFANGKNTIVSRGELVEIGGSFRIPEIMKLAGTTLKEVGTTNKTHVFDYEDNIDEETAVLLKVHTSNFKIIGFTEEADKKDIAELGKKYEILTMEDLGSGVLVDFSKYGLPKEPTIQESIKSGIDIVTVSGDKLLGGPQCGIILGKKPLIERLKKNQYLRAFRVNKITISILENIFQYYKDEREAIKEIPILNMIIEEKGKVLERAEKLSAILKERNIENSIIETESKIGGGSMPEETVASYAICFTGDAVLLEKRFRGNDIPVIGRIKNDHFILDAKTLREKDFEEITGAAERIFL
>NZ_CP028105.1|WP_081583123.1|2345279_2346308_+|selenide,-water-dikinase-SelD
MKKLQLDRCSIGGUASKIGPEVLSDVLSKLPSVEDKNLIVGFDKSDDAAVYKLTDEIAMIQTLDFFTPMVDDPYVFGQIAAANSLSDVYAMGGIPKTAMNIVCFPEKMDINILGEILRGGAEKVAEAGAVLSGGHSIHDPEIKYGLSVTGIAHPDKILKNHGCETGDILICTKSLGTGIVTTASKVGLASERALKESIENMTALNKYAGEIIVKYPVTACTDITGFGFLGHSFEMAENSEKTLIFESEFIPYINEAKGYAQDFLITSGGQKNRNYVQEHVDFQNIPLWMQEILLDPQTSGGLLFSVKKECVKEMMEEFESKNIKAHIVGSVADKKDKFIIVR
>NZ_CP028105.1|WP_005976255.1|2343944_2345135_+|Ppx/GppA-family-phosphatase
MTDKNGRYTKGIIDIGTNSCRLFIAEVLKNEKGINILNELVKEVEIVKLGEGVNQNHYLKEEAIERTIQCLKRYKETADKYEVKELKAFATSATRDAENKDIFLKKVRDLGIEIKCISGEEEAGLNFLGNSLVFDERILVIDIGGGSTEFTLGKNDKIDFIKSIDIGAVRATEKFFSQEDYSDENIEKCIEWVKENIKKIKEIKDEEFRAVGVAGTATTQISVKKKMEIYDSREVHMSEISVEELEENLKLFVSKNLEERKEIIGLEPKRADVIIAGTIILITILKELNKERIIVSESDNLTGAMIKEEKMSERLEWILEAYESFRRSSERRLVAGNIFDYFMQDFRGEISDAYDPATKEEIKEDIKEMADIIYNEEDKHKREFLVKILVNIVKML
>NZ_CP028105.1|WP_005976253.1|2342898_2343744_-|zinc-metalloprotease-HtpX
MKTLKTFILMAVMTFIFMLIGNAVAGREGLIFALIMAGVMNFISYWFSDKIVLSMYGAQPVDENSRLYQLVKKLAIEADIPMPKVYILNEAQPNAFATGRNPSHAAVAVTRGLMDIVDEDELSGVIGHELGHVHNRDILIGTVAATMAGAITFLANMAKWAAIFGGRGRRNDDRDGGSPLAMIAVAIFAPIAAMLVQMAISRTREYKADEFGAKVSGNPLYLARALRKLDDYSRRIPMRNAAPSTENMFIVSPLTGSKMASLFSTHPATEDRIRRLQEMAY
>NZ_CP028105.1|WP_005976251.1|2342388_2342856_-|hypothetical-protein
MKKILAILAVFSLTASVTLSKEIIPEYYIMEKLLIPISASPVFSYIGEKKIDDFKEIKAIQVDNKVLQNLVTHENPFYMNDSDGKTVAVRVGDYIVSPMTLSTVYSIRKNDFELNYRDLNAPDVSLVTADVTTIGEKIRTDEIDEVNNKIEASEE
>NZ_CP028105.1|WP_005976249.1|2341089_2342349_-|YihY/virulence-factor-BrkB-family-protein
MNIKRKLIYFFKEVASQGKISNIISGIQRALENYKRANSALWVTSLCFYTLLSLVPVFAILFSLGSWLGVAESIIIHLSKYSPLNEEMITFLVQFSENLLENARSGVLAGIGFLSLGWTLITMFSIVEKSFNDIWQVEKSRMILRKITDYIAFFLLFPLLILTINGGMVIIGKKLEGIYDISPYLLQVIPSLSIFLFFTALYMLIPNTKVKLIPAFFSAVFTSVLFSGLQYFFIHLQVMIITYNKIYGSFSVIFIFFLWLKIMWFFIILGAHLSYFLQNKDLKSHSNDVNSISFKSKEYAGMIVIRELIRRYSNNLSPVTVKELAEKNDIPYDLILYVLTVFEKNGLAAKVINVKNEDEASFTILQNIDQINFKKVFNVLESSGEDIRLQVNDDNRAFYKIIKNKDFDFLIKDLLENSK
>NZ_CP028105.1|WP_005976247.1|2340488_2340941_+|SoxR-reducing-system-RseC-family-protein
MLNKGVIKEINGDKIVVKLYKDTSCSHCSGCSGDGKYGKDFEFTTDRKAEIGDTVTFEISAGKVIKAASIAYVFPAVAMILGYFIASKLGFSENQSIASSFIALGISFVCLFLYDKFVVKKQKNSEIDIISIEKEDTSEMIDNCNNKNMF
>NZ_CP028105.1|WP_005976269.1|2353880_2354477_+|Holliday-junction-branch-migration-protein-RuvA
MYEYLRGKVEYKKPDYLALDVNGVGYKVNISLRTYDFISAGEEVKLYIYNYIKEDAFKLIGFLEERERNLFEMLLGVKGIGVSLALSVMSTFDIDTIRDLVATDDYTNLKRVPKLGEKKSQQLILDLKSKLKTLDALSIDTRNDDAAKHLMIEEELISALEGLGYSKKEINTLITRDELRSFKTIEEAIKGVLKKVNY
>NZ_CP028105.1|WP_005976271.1|2354495_2354987_+|thioredoxin-family-protein
MEYKELFETGMSFDTFFSIASASEKEKIKEIASVVKIKDEYIERIKKIDKKYNFLLSAESWCPYVRATVPVLMKMIELNPNIKLSIITEGRGFKFLREKLGIPEEKYVVPTLAILDENFNFAARYIGRPSKYRNIGFENVSGEYFKGHRSDDIVEEILERMGY
>NZ_CP028105.1|WP_005976273.1|2355979_2357290_+|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase
MRHSRNAKIRIIYFLMLFFMYRSIFVYLGLSINTAVYGIFILISFFYYLLDLLNFNNYKYKTKDFIYSSIINFCGFCVFYFFYKKIEFINAFLFYDLFQNTLRYFLLICNKKVMNVAIIDSGDYTNKIADILKKNKQYNYVGYLNDEERNKEKYLGKITDIEKIVKEKNIESIIFTSRKQIINYSNIITNLKLQGIKIIDYISFLEKCEGKIDTEKIDELWIVMSDGFLVLNNTLQKRIKRFFDIVVSISMLTATLPIIVLTYILVKLDIGIKSPMKIIRNPAFFKQKRIGIKGNEFEIIKFRSMKIHDPAKFSKYASEDDNRITSVGKFIRKTRLDELPQLINVLRGEMSFVGPRPEWNELGREYEKKIKNYKLRYAVQPGLTGWAQVMYSYGASLEDAEIKLEYDLYYIKHQDFVMDMIIFFKTCKTVIFGKGR
>NZ_CP028105.1|WP_005976276.1|2357291_2358488_+|glycosyltransferase-family-4-protein
MEVTLLIDNFIPDLGAASFRFESVVKELADRGYKVKIIASYPNRIELKNFKEFEYKDIEIYRICKTKLAENILRRAFRYFKFFYEAIKIGKKIAKKSDIVIATSPQLLVGVAGAIISRLNKKVFLIDIRDLWPDIVLDMGVMKKYNPIYLFLKVLEKYMYRQSKFLVYNSPGFYNYLISKYDEEKMKLITNGIDDYILNYFKNKEIKIEEKDKYKILYAGNIGIAQDIRILIDLAEKYRTKIEIIIIGKGSQESIIRDLIKEKQITNVYLIPSVPRNKLLEKYEEADILFLQLKDIKMFEKTIPSKIFEYLASQKPIIYGVEGVAKTILKEEFNRKYYFKANNIEDLIGTFENLIKDIAKNNYVKPDLEVLTNNYSRKMLSKKYVDKIEKIYEKNKFE
>NZ_CP028105.1|WP_005976278.1|2358512_2359310_+|glycosyltransferase-family-2-protein
MLEISIIIPTCKPDYYIWECLDSIKNQSLDRVFFEVLIILNGDKEPYFTEIKNYIKKNELNNFKLIYSKEKGVSNARNIGIEMSQGDYIAFIDDDDYISKNYLLNFEKIKSEDSLCIANFINFKKKYVVLKEIKYKINDSTSSLNKYRKIFSYIGGKIISKKIIENIFFDTNLKNGEDSLFMVEISKNIKYIKTGDQDTIYYRRVRNNSANFKKRKKMEIIKNSYGQIKKYISFYHNNQYDKMFIFIKIMAVIKGMFVSIFRRKI
>NZ_CP028105.1|WP_106878578.1|2359306_2360377_+|EpsG-family-protein
MIYFINFLLSVLYFYSLKRYKDLTFFMYFPILILWTMIIGLQFGVGTDYFNYLRIYNNPNYLELYFRKKEYIFYFYIKFIKFFFIEGQSFFIITSFLENLIFYIYLKTLLKNKIINLKKLWIFIFLFLCFGTTFYNQTNGIRQYFNIYLLIIMSVFIINKNFLYYNIIFFIGLNIHRSFLFLYPLYFINFIIKKINKKTFIIFIILVLILNFLPIVKVIKEIIKFVPRYKHYVYYDYFSEITLKNKITKMIFVPFYLESAKLIDNIKNEKKALILRWGIFGFIIRIFCLKITVLNRIGEYFVLLSLFPIYFLIENYIEKNSKFKLFILFFMILGLFVTKTIIFPKGEYLYNSYLFN
>NZ_CP028105.1|WP_005976284.1|2360397_2361594_+|hypothetical-protein
MRKKVLYISSLIVKKSSSASIRNTGLVTGLIKNKINIEILTVKYLDELEDEYLKSKLANIKIHNVDLKILNKYLNKRFKAKNVENNIFKNIFKIIKNLIKEIYFFPDVDKEWITEFNKLNIDFEEYDLIVSSSDTKTSHYIGEKIKKLYPNIIWFQIWGDPWSSDIGLSKLKKIRAKFKEKELLKKADRIFYVSPFTLNDLKNKYPKFSNKMKYIPRGYLEEVKDSSKSERDKIIITYTGVLNKNRNILHFLKLLKEYNDKNLKNIEFNIYGNIDDSLLKNITVFSFVYYKGNVSFEEIKEVYKKSDYLLFIDNGNNTTQIPGKIYDYLGTNKKIICLFKNKNEIYNYFKSELRLLTYQENEIDLLEILNSPERVVDKRFSNDIIAKKLIEYYMEMKK
>NZ_CP028105.1|WP_005976286.1|2361590_2362685_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVGLIFGTRPEAIKMSPVYHELKGNGIDVKVVVTGQHKEMLYQVLDLFEIKPDYDLEIMKQGQGLSELTGRLMLELDKIVKKEKFDYILVQGDTTSVLTGALTAFYNQIPVGHIEAGLRTGDIYSPFPEEANRKLVGNIADIHFAPTDVNVDNLLRENYPKEKIIKCGNTVIDALYWVKKNKNKDIEEIKKKYGVNDKKYILITMHRRENWGKPMEETLRAVRDYLEKHENIYLVFPMHLNPLVRDTAHRVLDGFERKILIEPLEYLEFIAIMDGAHYIMTDSGGVQEEAPSLGKPTLVLRDTTERPEAIDAGTAKLTGTKYEDVIKDMELLEEETYEKMSKANNPYGDGKTSERIRKYLETI
>NZ_CP028105.1|WP_005976288.1|2362705_2363950_+|nucleotide-sugar-dehydrogenase
MNTLLKKAEEKDLKITILGMGYIGLPTAIAFARAGFTVNGFDVNKKVIETLKNGHIHIVEPDLQEAFEEALGSGRLLPTDKLEKSDVFIIAVPTPFKKEHEEKIADLSYVGSGAKEVAEVLEENNLVILESTVPPMTTKLMTDILERESGISRDKFMTVHCPERVLPGKILYELEHNDRIIGAERKEAAEYTKVIYEAMVKEGTCYITDDITAEMCKLVENTFRDVNIAFANELSVICDKLNINVFELIKLANKHPRVNILTPGAGVGGHCLAVDPWFIVEKFPKEANVIREARLINDFKPRFIVNKVDEILNGNKELTVGVLGLAYKPDIDDLRESPAMEIAEILRDKGYEVIACEPNVNKEEVDGFKLYSLEEILKKADYLVLAQGHKEFKENIQLLKTKKIYDCLGIINLI
>NZ_CP028105.1|WP_005976290.1|2364193_2365228_+|glycosyltransferase-family-4-protein
MRIILCDNRMEGHHKPYFSTLLKLNYTKLKYVELDLAPSLKKNFFKYFLSRRKLIKEFLKNNEENDDVIVHFLTLDFIYSYMFLKKSINAIGTLHQVPKSLLKKIFLKIFSKKIRLIIVHSEFLKENLKRMGIENVRVVNYPSFYNYSKIGNKNELRIKNKIDSEKIVLSCLGGTRKDKGLNILLESLKYININFKKNLLINIVGKEEEFKKEYIEKELKDIPNRIILEKVSDDEFMENILITDLMIMPYLKSFGGVSGPMTEAIVNKIPCIAPKELEIGKIIIEKNIGEVFNCEDPIDLARVIEETIKKINSYYNTNYHTKLTKENFLKKYDEIYKNICENKN

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Crispr_ID: NZ_CP028105_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_6

2757791-2757908

Orphan

Consensus_repeat	Method
TTATGGAATTTATAATGAAGGAACTATAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028105_6

>merge|NZ_CP028105|6|2757791-2757908|CRISPRCasFinder
TTATGGAATTTATAATGAAGGAACTATAGGAGTTTTAACAAATGATGGATTGATAGCAGCAACATTATTAGAGAATGGTAGTTCTAGTTATGGAATCTATAATGAAGGAACTATAGGA

>NZ_CP028105|6|5|2757791-2757908|CRISPRCasFinder
TTATGGAATTTATAATGAAGGAACTATAGGA	GTTTTAACAAATGATGGATTGATAGCAGCAACATTATTAGAGAATGGTAGTTCTAG
TTATGGAATCTATAATGAAGGAACTATAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005976985.1\|2751644_2752451_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP028105.1\|WP_005976981.1\|2749635_2750004_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005976990.1\|2752852_2753170_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977000.1\|2761086_2761377_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP028105.1\|WP_005981031.1\|2761804_2762266_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP028105.1\|WP_005976987.1\|2752500_2752740_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP028105.1\|WP_005977013.1\|2773869_2774079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977015.1\|2774598_2775180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005976996.1\|2753883_2757168_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP028105.1\|WP_005976992.1\|2753230_2753410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977003.1\|2761369_2761636_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP028105.1\|WP_005976983.1\|2750782_2751658_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP028105.1\|WP_005977009.1\|2762914_2763496_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977011.1\|2763517_2773801_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP028105.1\|WP_005980292.1\|2785393_2785975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005980294.1\|2784666_2784876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005976978.1\|2748794_2749478_+\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP028105.1\|WP_106878593.1\|2775196_2784586_+\|autotransporter-associated-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP028105.1\|WP_005976976.1\|2747571_2748795_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_CP028105.1\|WP_005976994.1\|2753402_2753648_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005981031.1\|2761804_2762266_+\|IS200/IS605-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42838e-47
NZ_CP028105.1\|WP_005976996.1\|2753883_2757168_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	2.16279e-16
NZ_CP028105.1\|WP_005977000.1\|2761086_2761377_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	6.88071e-08
NZ_CP028105.1\|WP_005977003.1\|2761369_2761636_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.2004e-11
NZ_CP028105.1\|WP_005976983.1\|2750782_2751658_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.95021e-10
NZ_CP028105.1\|WP_005977011.1\|2763517_2773801_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	2.26305e-38
NZ_CP028105.1\|WP_005976987.1\|2752500_2752740_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000197291
NZ_CP028105.1\|WP_005976978.1\|2748794_2749478_+\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	1.30735e-30
NZ_CP028105.1\|WP_106878593.1\|2775196_2784586_+\|autotransporter-associated-N-terminal-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.55958e-39
NZ_CP028105.1\|WP_005976976.1\|2747571_2748795_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	7.87199e-27
NZ_CP028105.1\|WP_005976985.1\|2751644_2752451_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	1.05836e-48

>NZ_CP028105.1|WP_005976996.1|2753883_2757168_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIEKIMKAVKSGNKKRGKNITVGAVVGMLLSCTAVMGADEYLWIREDSGAIEFNTAITNDASGAGGNWNEANPYSDENIWNADTKTYINNMTLLSTAINITADGYVRDASCALKLSGDLGGVINNSLIMGTDINNVVRESSGIYIYDSSNVETITNNGLITVSAEGSNGIFNFGTVGTLTNTGSIMGTGLTAGHGIYSVTPTSPASLANLTNTGLIAGVASKGEGSGVVYMNANMETLTNSGLIKGIGSGSSSGLGIAIGGMSGTSGSIVNTGLITGTGTSSSSGITNRANGTLGTITNTGIIYGEKFAVNNANATIGSLNNYGILAAKTALVISTSGTITSENNYGLMFKGYSGNYTAKDDIDYGKFGTTTEIDGYTVINTKAKGVNKDNITGTGSLKLENGVLTYDDSIGNPQTENVSLDKKYILNGITDTLLVSTGDNKFNNSVINGYETAVIFDGTDSQLTLSGTIVNGGTDGASDTVKGSANRDTLTLQSGSIVNGNISMKGGDDTFVIGSEVTINGKIGMGDDNDTLTIEKGSIVNGTLDGGSGNDILNFNPETTRAFGNNEINVLHNISNFENMNINTNVTLFEKTVKDDGTITDLEVTGAENISIGAKGVLTLRIDATRIDNTGGTDKIIGHALYGNNGTIASTGGKFLLALNGAGNESIISFGTTELDNSLVTGSGGTFATTSLLHKVKRIVGTDNEVIITSRADLPTDITYEKLNEIYHSILSVDELGNFNVDDDEKLSTFLGYLNDIYAGNPYSYSSELSRKSAGMFRDIVTDNQFKADTGKWMIYGGLTHVDGGTKDTYYGKGYYTYDIGSSDMDADTKITGAYMLGEYGVSDTLTSGVVIGGNKLKSDLSNGSKVDGSALYIGAYAKKYIGNLKVTAGTGFQYGDYDADRMAVNKVASDETKAVMKYSDNYNDITYDIYLNGRYSNSIGDNLFLEPYATLSYTYIDQEGANEGNKALAIETASKSFDYTVGKVGVDLKKVIPHEKGKSTFSAGVSYTRIFDGAEEEYITGRFKGGSDFDILVAHKNEHSIGLNAKYALELENGVLFDVKGTYSVERDSHNQSGKNKTKGEWIVGAGIGYRF
>NZ_CP028105.1|WP_005976994.1|2753402_2753648_+|hypothetical-protein
MNENIEIYFKIVTTTVTFLLGYHRYIFSLFEKKVDRTVCEKERLFIEKFRGENIRTLTDGIKRIEERMTRIEEQLMKQNKC
>NZ_CP028105.1|WP_005976992.1|2753230_2753410_+|hypothetical-protein
MKEITTKFLKYFVCKWLGTKTVENILIVAMRELVKRTESKIDDRIFEAVFGKLEGEKSE
>NZ_CP028105.1|WP_005976990.1|2752852_2753170_+|hypothetical-protein
MATEDNQVILAVVQKEITKVESSIKREKAILKNIDDITATIEHIAEQIEAGTPLPENSAYESYGEWQTSAEKEIKSYHSSLETIDKYRSLLAAYHFYVKNNIPEA
>NZ_CP028105.1|WP_005976987.1|2752500_2752740_+|helix-turn-helix-domain-containing-protein
MEREEYIYKKLGNLSALDKALAEEIVEHIGEWATINEAAKYLKNHKNTIYERVEEGDVISRRIGNKILIYTRSLIFLLE
>NZ_CP028105.1|WP_005976985.1|2751644_2752451_+|ATP-binding-protein
MMKCKYCNKDYVRNENRYLELFPESLRKNVEYIPACDCLEKEKEREMEELERKRVHECIKNKVKKYEEISVIDNKFLESRFENADMSSKYMQLGKKYAENFLKKDKQIGLLFYGGVGTGKTFTTACIANYLMERGKTVLVINLGLYLNKVGRDWGEAEKRFLEQVEKCDLIIIDDFGTEKDLDENQSCWRAEKIYNLIDARYRSNKPLILSTNLIFDRDEKICELTKRFSVHGQNRIRDRITDMCFPVKVAGKSKRGMTQEAFIEFIS
>NZ_CP028105.1|WP_005976983.1|2750782_2751658_+|helix-turn-helix-domain-containing-protein
MDKVKMLGIYEEGYGVVAKKVMRDKTLNILSKAVYAYICSYTGKGKDAFPSQNLICRDLGIGKSTLVKYIKELKDRGYVQHKEKGKFAQNLYTVNAIPCIVSSDTVETDTNPTARGQVNTNNNSLNNNKKNNNNIKDKKINNTHTEVEEKADDSAEHKNEIEKEKLSDAPMEIQDILKKYKELGLPEYNYRPDNYVILGVWRELGAVKLFEALTLMSESEFVKNNMSVNSIFKIENLKKAMNGNFKDKENKGKKKNSSKKEFKRPEYKDFTEKLIDGALNGTLGGNKNDEM
>NZ_CP028105.1|WP_005976981.1|2749635_2750004_+|hypothetical-protein
MKREVENQLDQKLIDAIVKFNSLLRESFIKKEKISLKIDVPKFEPKELTNYRELKTAIECLRHNYREMLRYIKLDNYTPLLKIVFLYEEENSFPVILNLDLQQYLESDFFVGKEILNIKKIM
>NZ_CP028105.1|WP_005976978.1|2748794_2749478_+|RloB-domain-containing-protein
MGFDNLHKKRQGNLKKRKENIKEVEPLRFLIVCEGKKTEPNYFEPLKNQINAKYRPDLINLKVECIDIVGAGKNTESLIDYTIKLRDNANINYGNVWCVFDKDSFTSNQFNNAISKAGNENIKTAWSNEAIELWFLLHFEYLNTGIGREQYIEKLNGHFKKYKINKGKYEKSLNDIYQILEKYGNYDNAVKYAKKLEKINLKETPAKSKPMTKVYELVEELKVLLEK
>NZ_CP028105.1|WP_005976976.1|2747571_2748795_+|AAA-family-ATPase
MLIQFSFKNFKSFRDEVTLDMTASSIKEYSDKIIEDNGNKYLKITAIYGANASGKSNVIEAFSHMKNIIMNSFNSEAKWQNIPLKRFAFNEKSKNSESMFEVFFKNNNEVYQYGFELDSSKIREEWLYKKKSNKSEKFELLFARENDKFELSNGLKIYSEMLNGISEKTLILSFLANIKIEDIKNVYDWFKETKVLNLGDPFIDTIRSSFLPAELLKNNLEERDNFNKFLADIDVGIKDIKIEEEVTEEKKRYKAFSMHLNNDTQKEEYLPLKEESDGTLKMISLYSDLKKCLNNGGTIFIDELDAKLHPLLSKYIVQIFHNKNTNPKDAQLIYTTHDVINLKKENFRRDEIWFVEKNKENVSELYSLVEYKVENTKVRNDASYDKDYLLGKYGALPILKEFEVGEK
>NZ_CP028105.1|WP_005977000.1|2761086_2761377_+|HU-family-DNA-binding-protein
MTEGKFIRFYKKRNKCRSHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKRETKSRKIKMPMWKGERYTEPKEVIKFRAGKGLIKMAEGDADE
>NZ_CP028105.1|WP_005977003.1|2761369_2761636_+|HU-family-DNA-binding-protein
MNKREFAKTYRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQPRVISNPVTRERMTVYPKKIVRFRASKKIK
>NZ_CP028105.1|WP_005981031.1|2761804_2762266_+|IS200/IS605-family-transposase
MYDNNSLSHTTWNCKYHIIFAPKYRRQVIYGKIKGDIGQILRKLCEFKGVEIIEANACKDHIHMLVSIPPKISISSFMGYLKGKSSLMIFDKHANLKYKYGNRHFWCRGYYVDTVGRNKERIAKYIREQLQEDIANDQLTLKEYIDPFGEKTN
>NZ_CP028105.1|WP_005977009.1|2762914_2763496_+|hypothetical-protein
MKKILGIFLLLSCMTTALYSQEVSEKEGRKVLEQIRKEIQAEEKAKLKAIEDAEKAKAEEEKARIAAEKAEEKKGKKILEDIRRDMNESLEEKVFRSENNPEARIAAAGAAFEIGKERMAFLKMEEEEIIKLEEVLGMEPDENRVFLSQKFDEVYDQFNSNNNEIELLLLENEKLNEYLSRLDKMEQKVRAGN
>NZ_CP028105.1|WP_005977011.1|2763517_2773801_+|autotransporter-associated-N-terminal-domain-containing-protein
MRKNDIEKSLKRFLKRKVSYSLSLLIAFMITGGISLGAGITAEEIQETKSDLLTRIQTEREEIKRKIAENERLIKEYNSDFVELVRKGDFYSKPLFNSTQIFFTYQYLDNGKMKDRTEKEFSETIDAINKHYGTRSGRSLLRSSGNIGKDKIMSGNGVAVDNEVFREEINLGANIIPVEPVLPEVNPEISVNISEPTVNLGALPGTVSISPITISTITPPTVVPPSAPTGISLTVTTPDAVNKIAVSTPVIVPPTTPTDKEITVTAPTAPGGYDPSYISVPEAPSSPVINLPNMPSINFVSMSNGNGAYVEVDAVPGGAGSSARIQNGIISAVSVIDGTFMVKREILTPYGITSAGGSYGTATTTANNSFRYSYSNYKAYTFAAVTGGVGSGTAAGNIVNAGTIADKYAISYANNYADSASVQRIVAGEALTFNNGKFRVARESDSASVYLGEFLHMDIHGSKAHGTIRTHLVNTVAKIASDGAGATTATAAVLPAWDDVIANYATNTPRAIAWVNSNDIALEGGNLNLTNMYHHTSAVTSGIVINTGKIQIRPYKSGGTIYDGYNSVFVVSSEQQANKAQYVMYNKGEINTSTQNTGVFTINNGWYRRAGAETYCNSSDNFVVNKGVIEMTGKHSIGVYGQFLSWKATAANRGVLQMDFMDGANRNPIQLYGDESIGLYVLSEFNSSNITGNFHVDIGGINTGNKSISVDGNDTNGGESIADYWSGNTSTDTVDGSVGILSYRDINLTSHGIVIHDKTTGNIGVAPQKKAAYTWSFTGGGQTSNWAITAANPNLNLGSGYIKINGGKDNIGIFAREGNVTTTGSVDLTDGTGNLAIYAKDYTASVGKITTTGNVANTVVLFADNGTINVTDSVKLLGLKLTGATTGNQNNILAAYATASGTISMNNSGTIGSLTSPDIEVTGMELGDASGQYRGLALMANGGVINGKNNYIKVINGAAGVASINSGNIDITGSTVYVNNGYAVYSDGTGTVDLSNGKLVLDGNSVAFDLDFSLTNPLTLTNAEIHVVSNDVTAVNLKNVSTALSVNSLKSSIISALGGTINITDDGIHDKYKIAAVDGGTLNIDTNINKADTDPDSKGYFYYKRFLGQRLKLNVTGGVEVNAAINSADATAYFKGQVVGLEMNSSSSASGVSDTQINLASNSKVIADRTDSGAGAIGLYMNFGEIKLASNSKVEVEKGSNVVNNEAVGVYAVNGSKVDNAGTIEVGGNKSIGILGMAYREAPIGTVIVNEFGAGLTDQGKVNIINDKNITLDGVGTIGIYAHNNNSSGTKAGAVVTNTINGVITVGSSDTSNAAVGIYGKKATISNLGKVSVGDGGVAIYATEGSEITNLGTLDLGADGVGVMVDGTSDISAASVTLTSNNTGTLGKTGIFYKGSLGTESKTIGVAVNASALDKGTAIYVENMNATSSGTLNVGKEGVGIFVKGNLTQTGTNTGTIDLTAGKNDAVGMYTTTANILNNTGGSINVNDTSQIGMYAEGANRKATNKGTINLNVDSSTGIYVKSGAVTDLDAGNTIVFNGKSSVGVFAENAAVNFKDNLTFLNSNENKNIYVYGKGTTVGIDPGKIVTVNGVGTPTTAGNKTVGIYLENAGTGSTFTSNTTGQLVVQGEAVGIYSKGNNTLNVNVTAVGEKTTGVYIEGASTITGTVTARGASGVGAVGVYGSGGAVTIGAGGLTLNTDTDKGTGMYLADGAYASGGKITVNNTATVDNIGVYYSKGTASGTVANGAEVELTGNKSIGIYAADGINLVNSKNITSTGGSNNIASYVGGNSTLTSNGNIIMTGMDNIGIYTGKGSGINNGAIDLTGATGTSSAGMVAKTDASSDTASVENKNTITVGSNLGMYVAGNGTSSGKNTGTITATTGTGVYVDGAAHSFNGTGGTIASNAVGIYLKNTGANKITAGTLNIGSGGVGVFGENAKIDFAVNVTGAGAVGVAAENNSVISGNITTGQGSVGAYLLDDTVTFNGANITTGTNNSGTSVGVLFDSAITGTYTMNNVSVNAKNGVGIYLGGTGMTLNHNGTVTTEGGIGIYVKNGTTLTTGTSILNISNGGTGIYVEQGTANLGLSGNLTFNFGTGGGIGIFNNGGTLNIGSNITLNGSGSLAATTDGSFVSSGNITVGEGGTGLLGQYSSSSITAQSITNSGIITASSGGIGLAAVKTGAGVPLAPITVNNLNTINISGKSSGTSEPSIGIYTDVANVENTGNINVGTDGIGIYSIHNGVLTSVKNDNMKMTGTDGIGVYLKGATTGLLSNNITSTGGAGNTGVILEDIGTIAINAGTITLGEAGVGIVATGTTTSTITGSISVGDSNSIKSAIGIVADNGANITLAGTTTITAGKNGIGVYAEGAGTIITVPNAANITVGANGVYMYSNGANLNFAGNITANNQIGLVADGGTVTSTGATINVQNGGLGVFVKNAAPVFTGTTINVQAGNSSQYSIGAYYDGVSSIGTAPVITQTGSYTIGMVLNNSTGTTAGGISIGGAGSTNQIGAMAKENSSLTIAGNVLVSGDENIGVYGEDSLIRTTGNITVLDSSICVNKSTSSIGVSINGGSYIGAGNLSVGNYSIGVFGKDMTAGSVITQGTGTETMAVGNNGLGIYGEGTGGTITADMSNITVGTDNAIGVYAKGMNSIVTGNMGIGANTSIGIASEGNGDVTYTGAMTIANKAATASVGIYKTDGAGTISISAGSWSIGENGYGIYLKQTTGQSATVNNNADMNLHMAAVGIFSSGANIVNNSGNITVGATNVNGDHANLEKHENSIGIYLTGGSIGKNTSSGVITINHDHSVGVYVAGSTTSFTNEGIINVDNGGIGILVQDKGTAENKGTINLGGTLAGCGSPTVGMAAYGGAKIINSLTGVINVNEGTGMYVNTGAELVNRGTINVLNGIGIEGNGKVTNSGLITVTGTGTDRSTSGVGAANVGAIEIDSAGNIKINDKYVSVGGTLSTDGILIIDGAYVDVTTGIPLFSASSVSGEVNIMSNFATTGNGITYLIKNFVNTAAGTVTGNKLIPVTSPLFVAKVTSNGDLAIAKRPYADIVIGEQFDALHKGLDNILENSGGNGRDAEILKKLNAYLNDFSGEDFEREASRTLAETRGDIYATIQGRMQDINRAFDNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDEYDYKVMGLLYMKEKEGTEYGSKYGYTLGFAGSKFDFDDGGSKEDVYSLRVGAHRVKNLSEEHKVSWLSRIELGYNRHIAKRKIELDTTYENKGEYNTYSVALDNRITKVIYTDLSRQLDVYADLDLEYGKIDDFKESAGSKGGLEVQIKDNDYLSAQAGAGVKASQRIYAGNDISVKVTADVKYAYEFGDNYDGNKAKLKNGEEGYYSLITPEEREGKLTGKIGLTVEKANHMGVTFEVEAADEGHKKDSSIKYGVRFNYKF
>NZ_CP028105.1|WP_005977013.1|2773869_2774079_+|hypothetical-protein
MERRRKRGRPLGSGVKNYRTLGCRFTEEEYLLVLESLKKLKKEYGSNNKIIFNLFKRYEKTLREKDNKM
>NZ_CP028105.1|WP_005977015.1|2774598_2775180_+|hypothetical-protein
MKKGIIVFLFLSCLTTALYSQEISEKEGKKVLEEIRREIQAEEKVKLKAIEDAEKAKAEEEKARIAAEKAEEKKGKKILEDIRRDMNESLEEKVFRSDNNPEARIAAAGAAFEIGKERMAFLKMEEEEIVKLEEVLGMEPNENRVFLSQKFDEVYDQFNSNNNEIELLLLENEKLNEYLSRLDRMEQKVRAGN
>NZ_CP028105.1|WP_106878593.1|2775196_2784586_+|autotransporter-associated-N-terminal-domain-containing-protein
MRKGDIEKSLKRFLKRKVSYSLSLLIAFMITGGISLGAGITAEEIQETKGDLLTRIQTEREEIKRKIAENERLIKEYNSDFVELVRKGDFYSKPLFNSTQIFFTYQYLDNGKMKDRTDKEFAETIDAINKHYGTKSGRSLLRSTGNIGKDKIMSGNGVAVDTEVFRETIEVGANIVPVEPILPEINKTINITVGVPTIGGIPTITAPTIVAPTAPTAITTPTINVTTPGAVASINVTAPSVPTPTVPGDKTIVKPTVAIPNAVDPTMVVAPTAPTAPVIVPITVNSFSITTAGDGNGDGSWYWNTGGSNGIISQVIMTAGTWDINNFSNSTITSGYDSEITGYSAYMPFQRDGITQYAGAPIDDKSYSGTGIGSGKMGIYRIVGSPYSSFGTGTTVNINATTRSGTVSTLRQFIHFDPHGEEAAILSKITNATSDEKTKAQTYYDIAKANNGMAAGHERAMFLTLKGDINLTGNTVNIVGLQGHSYGDASNYGSSQVFVFNSGNIKVNGEKNAIYAYTAVGDTAHRYFTFSNHTLDGQTGSMKIEGASSKNNAMVVFDRQNSGVNHVLSFFNDGLMEIEDGSQNIGVFLGTGINKGTVELNAPIIISGGTNNVAVYHGAQGVGPTNQLAGQSVLKADITGGTKNIGYFTEFAQTLNDTTGTKPNHAFTISGTAENSIGVYSKANVNIGTGSVVLTGGTNNVGLYTENGNIISKGSIEFGTGTSVGNVGAYAKNGYSITVDSAKTTGTSTNGTLLYSDGGTINVTSDVSATGMQVTGADTSNKNNSMLAFSTGGGIINLTNNILGSSSTPDIEVTGMALTDASSMYRGIGLMADGGTINVLSPVYIKVTNGAAGVASINTNGNINIAAGSTIEVDNGYAVYSDGTGKIDMQNSTIILGGNATAFDIYKSGTNPLTVTGTTVKVVSNDVIVFNVKNITAPLDVSTLEASINPGVTVTNDGIHTQYIEAAVDKAIINVDTALNKADTSGASFYFYNRFIAQNSVLNVNENVTSELATSQTTNFKGQVIALEMNSSKSATSNATSKINIASSATVKAGRTDAGAGAVGAFINYGEINNDGTIEVQKVNISVKGGTGIFATNGSKVDNKATGKIDVYGDEALGIYATAWRKTSLGTLAGEEFGSSALNQGETSVINSGNIVTNGEKSVGIYLENNSRDASLAIGMNREISAVNAGNITVGKDSIGIYASGTGTGYESETKIGNTGTLKVGENSTGMYGENAVTITNIGNLELGKGATGIALSPDSKLDSSAVLGTITTTGGVSDRVLLAIHGDTSSPAATSIATPGGIIDTGSISNMTSLYVQGATGASTGSSTTLKIGASGVGVYVNSGSATNAGKIEMASGKTNAVGMYTKKGTVTNTGTIEVGDSTQLGMVGVSSDANLVNTGIIDLKGTGAAGIVVQNGATITDSGASNLTFSSTKSFGIAADNAKVVLNGGTVSIANSGENIYVYAKNNSNVTISNATTINGAVVDPIKKSVGIYLDGTNVLTNNSTLTATNGAIGVYANGANSLTNGIYISTGDSTVGIYFTNGGTLANTVVNSGSSSGNSVGVYASGGQVNVTGGLALNIGTGGSTGTGMYLADGAGVTGGTITVTNNSSTANIGVYYTGANTKTAAHGAEIILAGTNQEVGIYANGGIKVTNSKNITDNTATGSVGALVSGGSTYTATGNFNRTTAGAAVGYYADNGTADNKGTISLTGAGSTAAGMVAEGTASATAVVKNSLTITADNSVGMAVLSGTGTSTGINAGTINATTGTGVYVKGANTGFNGAGGTINLTGAGTGIVLDNTGAGKITNAGTITLAANSVGVYGDNAKIDFPVTINGTSGTGIYAENGSVVSGTVNAGNSKDTVAVYLADNTASVNGAVITAGGVTSTSSIGLYLGGTGLTHTVGNSTINAPTLGTIGILTDNGNTINYSATTNVGNGAIGMYLKGTGTLLNANAGTINITGTGIGVLVDTGATANLGTSGTLTVNFNGGGGILSFNNGGTVNLGANIVIGSGTGTLAATKDGNLSNSGTITIGDGSAGLLGVYSAGGPFTVSNTATGVINVQAGGLGLVATGTGALVTVKNDNLINVTGKDAVGMYADVGNIDNALGTINVTNNGIGMYLVGAGSILDFGTLNVTKGVGYVVNGATLGAATGTVTLHAGDKDNYSIGGYYLNTSGTINLPAIADADYSIKAAISGGVNTVTGAITTTGGQNKIGIFASGSDTGLGTVTVGGKGNIGVYGKDSKLTVSGITVADSTLTNTEDIPVGVVLNGGSYIGSGNVSVGNNGIGLYATGIQNNIQHNGGTLGVGNSSLGFYGEGTGTNSLTVNTTGITLGDNNSIGVYAKNINSSVTGDMYVGTNTSIGIVSEGNGNVTYSGDLTIEDKGTGVNDTGSVGIYKLDGTGTVNVLAGNWNVGNNGYGIFLKQAAEQSATINNNADMTLETAAVGIFSSGKNIVNNIGDITVGKTDVNGEHDKTDKHLNSIGMYLTGGTVATSSGTITVNHDHSVGVYGEGTETRFTNTGTINVDNGGVGILVRNGAVAVNAVGGDINLGGTLASCGAVTIGMASYGAGATIINNGTITVNQGAGMLVGTGTIFENNGTIVVNNGVGIEGIGSTINAGHIVVNGGSAIGNGGLATAEIGSVTITPDGTIKINGNYTSIGGTLSTAGNIIVDGAYVDVTTGTPLFNANSVSGEVKLLPNFAATGNGISYEIDGFVNTAMGAITGTKLTPVTSPLFIAKVTDKGSLVIAKRPYADLVIGEQFDALHKGLDNILKNSGGSGRDAEILKGLNEYLEGLPADQFERETSLKLAETRGDIYATIQGRMQDINRAFDNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGLLYMKEKEGTEYGSKYGYTIGFAGSKFDFDDGGSKEDVYSLRVGAHRVKNLSEEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVALDNRLTKVIYTDLSRQLDVYADLDLEYGKIDDFKESAGSKGGLEVQIKDNDYLSAQAGAGVKASQRIYAGNDISVKVTADVKYAYEFGDNYDGNKAKLKNGEEGYYSLITPEEREGKLTGKIGLTVEKANHMGVTFEVEAADEGHKKDSSIKYGVRFNYKF
>NZ_CP028105.1|WP_005980294.1|2784666_2784876_+|hypothetical-protein
MEKKRKRGRPLGSGVKNYCAFGCRFTEEEYLLIQESLKSLKKEYGSKNNIIFNLFKRYEKTLREKDDSI
>NZ_CP028105.1|WP_005980292.1|2785393_2785975_+|hypothetical-protein
MKKILGIFLFISCLTTALYSQEVSEKEGRKVLEQIRREIQAEEKAKLKAIEDAEKAKAEEEKARIAAEKAEEKKGKKILEDIRRDMNESLEEKVFRSDNNPEARIAAAGAAFEIGKERMAFLKMEEEEIIKLEEVLGMEADENRVFLSQKFDEVYDQFNSNNNEIELLLLENEKLNEYLSRLDRMEQKVRAGN

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Crispr_ID: NZ_CP028105_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_7

3065690-3066813

TypeI-B

Consensus_repeat	Method
ATTTAAAAACTTCAAAGTTACTGTTATAC	CRISPRCasFinder
ATTTAAAAACTTCAAAGTTACTGTTATAC	CRT
ATTTAAAAACTT-CAAAGTTACTGTTATAC	PILER-CR

17 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP028105_7

>merge|NZ_CP028105|7|3065690-3066813|CRISPRCasFinder,CRT,PILER-CR
TAAGAAAAACTTCAAAGTTACTGTTATACTCTGCATATACTCTTGTGGATCAAATGGATTTAAAAACTTCAAAGTTACTGTTATACAAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGCATTTAAAAACTTCAAAGTTACTGTTATACTATATCTCAAAAACCTGTAACTTTAAAATGTTTAAGATTTAAAAACTTCAAAGTTACTGTTATACTTGGAGTAGAAACAGATGTAAATGAGCTAGATGATATTTAAAAACTTCAAAGTTACTGTTATACCAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAGATTTAAAAACTTCAAAGTTACTGTTATACTTTACCATAGCTCTATACCTACCTTTTTGTCGGTCATTTAAAAACTTCAAAGTTACTGTTATACTTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAGATTTAAAAACTTCAAAGTTACTGTTATACAATTTTCACAAAGGATATCTTCCAATAGATGATTAATTTAAAAACTTCAAAGTTACTGTTATACGATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAAATTTAAAAACTTCAAAGTTACTGTTATACTGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAAATTTAAAAACTTCAAAGTTACTGTTATACAAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAGATTTAAAAACTTCAAAGTTACTGTTATACATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTTATTTAAAAACTTCAAAGTTACTGTTATACTTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAGATTTAAAAACTTCAAAGTTACTGTTATACCCTTACAGTTAAATTTATATAGTTTATTATTTCTGATTTAAAAACTTCAAAGTTACTGTTATACAAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAATATTTAAAAACTTCAAAGTTACTGTTATACTAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAAATTTAAAAACTTCAAAGTTACTGTTATACTAGAAAATAATCTTACTTCACATTTTAAAAATATTATATTTAAAAACTTCAAAGTTACTGTTATAC

>NZ_CP028105|7|6|3065690-3066813|CRISPRCasFinder
TAAGAAAAACTTCAAAGTTACTGTTATAC	TCTGCATATACTCTTGTGGATCAAATGG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TATATCTCAAAAACCTGTAACTTTAAAATGTTTAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTGGAGTAGAAACAGATGTAAATGAGCTAGATGAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	CAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACCATAGCTCTATACCTACCTTTTTGTCGGTC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AATTTTCACAAAGGATATCTTCCAATAGATGATTA
ATTTAAAAACTTCAAAGTTACTGTTATAC	GATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	ATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	CCTTACAGTTAAATTTATATAGTTTATTATTTCTG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGAAAATAATCTTACTTCACATTTTAAAAATATTAT
ATTTAAAAACTTCAAAGTTACTGTTATAC

>NZ_CP028105|7|2|3065690-3066813|CRT
TAAGAAAAACTTCAAAGTTACTGTTATAC	TCTGCATATACTCTTGTGGATCAAATGG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TATATCTCAAAAACCTGTAACTTTAAAATGTTTAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTGGAGTAGAAACAGATGTAAATGAGCTAGATGAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	CAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACCATAGCTCTATACCTACCTTTTTGTCGGTC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AATTTTCACAAAGGATATCTTCCAATAGATGATTA
ATTTAAAAACTTCAAAGTTACTGTTATAC	GATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	ATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	CCTTACAGTTAAATTTATATAGTTTATTATTTCTG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGAAAATAATCTTACTTCACATTTTAAAAATATTAT
ATTTAAAAACTTCAAAGTTACTGTTATAC

>NZ_CP028105|7|3|3065747-3066813|PILER-CR
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TATATCTCAAAAACCTGTAACTTTAAAATGTTTAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTGGAGTAGAAACAGATGTAAATGAGCTAGATGAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	CAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACCATAGCTCTATACCTACCTTTTTGTCGGTC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AATTTTCACAAAGGATATCTTCCAATAGATGATTA
ATTTAAAAACTTCAAAGTTACTGTTATAC	GATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	ATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	CCTTACAGTTAAATTTATATAGTTTATTATTTCTG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGAAAATAATCTTACTTCACATTTTAAAAATATTAT
ATTTAAAAACTTCAAAGTTACTGTTATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005977447.1\|3056028_3057048_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP028105.1\|WP_005977413.1\|3077474_3078086_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977425.1\|3068279_3068762_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP028105.1\|WP_005977429.1\|3066983_3067268_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP028105.1\|WP_005977419.1\|3072126_3073071_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP028105.1\|WP_005977435.1\|3062570_3064064_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP028105.1\|WP_005977449.1\|3051537_3054591_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP028105.1\|WP_005977443.1\|3058401_3059574_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP028105.1\|WP_005977411.1\|3078082_3078736_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NZ_CP028105.1\|WP_005977415.1\|3074876_3075572_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP028105.1\|WP_005977423.1\|3068775_3071361_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP028105.1\|WP_005977433.1\|3064270_3065389_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_CP028105.1\|WP_005977439.1\|3061163_3062039_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP028105.1\|WP_106878598.1\|3054730_3055813_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|238879
NZ_CP028105.1\|WP_005977421.1\|3071368_3072124_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP028105.1\|WP_005977437.1\|3062048_3062486_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|179848
NZ_CP028105.1\|WP_005977417.1\|3073073_3074858_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP028105.1\|WP_005977445.1\|3057060_3058383_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP028105.1\|WP_005977427.1\|3067268_3068270_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP028105.1\|WP_005977441.1\|3059688_3061167_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005977447.1\|3056028_3057048_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	3.74264e-175
NZ_CP028105.1\|WP_005977425.1\|3068279_3068762_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.0742e-50
NZ_CP028105.1\|WP_005977429.1\|3066983_3067268_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.31304e-26
NZ_CP028105.1\|WP_005977419.1\|3072126_3073071_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.3397e-47
NZ_CP028105.1\|WP_005977435.1\|3062570_3064064_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP028105.1\|WP_005977449.1\|3051537_3054591_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP028105.1\|WP_005977443.1\|3058401_3059574_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	3.42303e-121
NZ_CP028105.1\|WP_005977411.1\|3078082_3078736_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	5.03367e-100
NZ_CP028105.1\|WP_005977415.1\|3074876_3075572_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.69572e-12
NZ_CP028105.1\|WP_005977423.1\|3068775_3071361_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.15479e-32
NZ_CP028105.1\|WP_005977433.1\|3064270_3065389_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	1.79162e-08
NZ_CP028105.1\|WP_005977439.1\|3061163_3062039_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	4.93737e-115
NZ_CP028105.1\|WP_106878598.1\|3054730_3055813_-\|HDOD-domain-containing-protein	gnl\|CDD\|238879	cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.	3.44007e-15
NZ_CP028105.1\|WP_005977421.1\|3071368_3072124_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	7.66148e-49
NZ_CP028105.1\|WP_005977437.1\|3062048_3062486_+\|ACT-domain-containing-protein	gnl\|CDD\|179848	PRK04435, PRK04435, ACT domain-containing protein.	2.8264e-59
NZ_CP028105.1\|WP_005977417.1\|3073073_3074858_-\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.86199e-09
NZ_CP028105.1\|WP_005977445.1\|3057060_3058383_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP028105.1\|WP_005977427.1\|3067268_3068270_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.31277e-145
NZ_CP028105.1\|WP_005977441.1\|3059688_3061167_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0

>NZ_CP028105.1|WP_005977433.1|3064270_3065389_+|helix-turn-helix-domain-containing-protein
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGVSYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEFIEQICRESKETKISKLYSFCKEKLSSKYNISYPTFYRIVSNLDGFFNKSSSLHMKKIKKENQVYLVLEIPLYILVSEEESEHKIVPQLLISIDVATLKPINHALNYNTSSIYTLLSFIRESMLKVSVKSGKLVKPQEILVSSENINNKKILKEIYDSTSIKITEYFSENEEIRKFVSFLEEDIEKFYYQNNKILSYQNLKSFLDSYIYLDNQKYDFALKYEMIEVIPSIRELDIFLQEASRKISKSSLRFNNFIYTNNSLNTLEGKKVIVKYSPLDTEILYLFFRNQFLGTANISAG
>NZ_CP028105.1|WP_005977435.1|3062570_3064064_-|PTS-transporter-subunit-EIIC
MKIFAEVQKIGKALMTPVAILPAAGLFLAFGNKLQFTLMEQAGQVIFSNLPLLFAIGAAIGLVGGDGVAALSAVVAILIMNTTMGIVSGAAAGIAAGDMSYAMVLGIPTLQTGVFGGLIAGIIAAVCYKKFYKTELPAFLGFFAGKRLVPIVTAVAAFVIGLAMPVIWQPVQIGLAKLSYLANETNTNVSTFIFGVIERSLIPFGLHHIFYAPFWYQFGEYTNAAGQVVNGDQAIWFAMLKDGVTNFSSATYQGAGKFLTGKFVFMMFGLPAAALAMYQEAKPANKKLVGGILFSAALTSFLTGITEPLEFSFLFVAPILYGIHCIFAGLSFMLMNMLNVRIGMTFSGGLIDYIAFGVLPGTSGFQNNWYLVIVVGLCLSVVYFFGFRFAIRKFNLMTPGREDAVIEEVSASGNEIKSDELAVGVLEALGGKDNLVSLDSCITRLRVEVKDTKTVSDKDLKKLGASGVLKVGTNGVQAIFGSKAQFICNDLKKMTGI
>NZ_CP028105.1|WP_005977437.1|3062048_3062486_+|ACT-domain-containing-protein
MKEKYLIVNKKILPDYFEKVVEARNLLTEGKVKGISDAVKMVGISRSTYYKYKDYVFLPSDNSIGRKALVSMMLEHKKGVLSEVLNYLSSVNGNIITINQNIPINEVASVVISLDISDITIPIEDIISGIEQINYVGSTKLLSLE
>NZ_CP028105.1|WP_005977439.1|3061163_3062039_+|homoserine-kinase
MITIKVPATTANIGPGFDTLGLAFKLYSYFTFKKIEYGIRILGCEEKYQNDSNLVYTSFKKTLEILKYPVPGIEITIKSDIPVSRGLGSSAACIVGGVMGANIIAGSPLSKDEIFKICNDIEGHPDNIAPALFGGLTASLVEEGIPYTVQYNINENLYFCALVPDFRLSTAEARKVLPSEIPYKDAIYNISRIAVLLKALENGDDLLIKKSLSDTLHEKYRNILIHEYEEVKEICEKNGNTALFISGSGPTLMNIAKTKDFQWKIEYEIKNLKNSWIIRTLDIDMKGAVVL
>NZ_CP028105.1|WP_005977441.1|3059688_3061167_+|threonine-synthase
MNSNFESTREKKIQCSASQAVIKGIANDGGLFVRRDMDSLKINISDLKNKKYTEIAEIIISKILDDYPKESIKYCVENAYDKKFSSDDITPLVKVGNDYVLELFHGPTSAFKDMALSILPYLSTEALKLNEIKEKILILTATSGDTGKAALEGFKNIDGIKILVFFPNDGVSKVQEKQMVSQEGNNTYVYAINGNFDDAQSEVKKIFTDEEIREKLKKKNYSLSSANSINIGRLVPQIVYYFYSYMKLVEMNEITLGEKVNFTVPTGNFGDILAGYYAELMGLPVNKLICASNENNVLYDFIKTGTYDRNRPFHKTLSPSMDILISSNLERLIYHLSGSNNEYIKSLMDKLKSEGKYSVSDEIKNSIDNLFYAGYTKGLQTSETIKKVYGEYNYLLDTHTAVAYSVMEEFKQKDPHHKNIVLATASPYKFSKAVYESLFGENNADEFKIMELLNEKTRVPIPENLKTLKDKKDIHTSVINKEDMKNCFEVIL
>NZ_CP028105.1|WP_005977443.1|3058401_3059574_-|homoserine-dehydrogenase
MKIGLLGFGTVGSGVYEIVKSTSTCFFDDIEVKKILVKDEKDKVMDIITTDAEEILNDKEIDLVVEVMGGIHPAYEYIMKALKNKKSVVTANKAVVAAYLKEFTKTAYENGVSFEYEASVCGGIPWIKSLEKVKRIDEVTEVYGIFNGTSNFILDNMTKEGYEFQEILKKAQEKGYAESDPSADIDGIDIMRKLLITSSLAFECEVSEKEIDVFGIRNIQKTDIEYFKNINCTVKLIAAGKKYEDKYCAVVEPVIFKNERIEAAVPQNFNIGTIYGKTIGELKFYGQGAGKLPTGNAIVQDIIDIIEAKGKLKERKFEKKLTKDSSLVSGKYYVRINNEEFEKENSDIIERKLENSGNLIYITKKIDCYTMRKTAEKYIKEGIFYARFED
>NZ_CP028105.1|WP_005977445.1|3057060_3058383_-|aspartate-kinase
MIKVAKFGGSSLADAEQFKKVKNIIENDENRRIVVVSAAGKRFKEDNKITDLLYLCYAHIKYSVSYESMFAIIENRYLEIRDELGLKCNLESEFRIIKSRMKKGMNRDYLVSRGEYLAGMLMAEYLGYDFIDAENVIFFDYNGKVDIAKTREAMEKAVERSPKGVIPGFYGTLPNGEIKLFSRGGSDITGAIVADCINASIYENWTDVSGILMADPNVVKDPKRIEIITYSELRELSYMGANVLHTDAVAPAKRANIPINIKNTNAPENPGTIIVDENNELLKNAKNYFITGIAGKKDFSVISIYKDHMSGEIGAIRKALEIFEKYKVSIEHIPTGIDTFSLVVATENIKKYLYEIVAEIKKECEPSEVKVIDNISLIATVGRNMADRPGMSGKLFAAIGNSGVNIRMISQGSDEINIIVGVENEDFEKAINVIYNNFVI
>NZ_CP028105.1|WP_005977447.1|3056028_3057048_-|aspartate-semialdehyde-dehydrogenase
MKKYNVGILGATGAVGREMLKVLEEREFPVENIRLFASKRSAGKKMFFKGKEYEIEEAKKGIYTGIDILLGAVENEQAKEFIPSAIENGAVVIDNSSAYRMADDVPLIVPEVNPEAVENHKGLIANPNCATIIGLVAVNELNKYSEIERMIVSTYQAVSGAGSGGITELDAEIKAIAEGKDFVMETFPYQIAYNLIPQIGGFDEKGYSSEEMKFQKEGRKILGNPKLKVNCTCIRVPVYRSHSESITIEFKDKIDAAKAREILSKADGVKLVDDPYNKKYPMPLDTSDQDLVYVGRIREDITNDEGKGLTLWCCGDQVRKGAATNAVQIGELLIKKGMI
>NZ_CP028105.1|WP_106878598.1|3054730_3055813_-|HDOD-domain-containing-protein
MALEKIVMLGDSIIDWNYNSKYINYGHAGFKTRDVLWLLEEKPEIEGDIGILLVGVNDILCSFKEEYTLNYYSKTVDILRKRFKKLVLLSMLPSDTPRINIKSKMLNEKLKELYPENFFDIYNLLLNDKELLADKYTVDGIHLNNDGYDVFNKALIEIVDKIKKDERGYPDRETAERELEEAGKLNPGQWITHSKYAALACERIAEHCPHMDSEKAYVIGLLHDIGRRVGIVQERHMLEGYNYCMSKGWKNAAQICITHSFMLKDITTSIGKWDISKEDYEFMKKFIEDVVYDDYDKLAQMCDSLALPDGFCFLEKRFVDVAMRYGVNEYTTKRWGAIYDIKKYFEKIAGKSIEEILEIS
>NZ_CP028105.1|WP_005977449.1|3051537_3054591_+|efflux-RND-transporter-permease-subunit
MNIIDYSIKNRIVTLFLTFVIIAGGIFSYTKLGKLEDPEFRVKEAIVVTLYPGADPHQVELQVTDEIESALQQIANVEYIESVSKAGYSEVKIKLNESLKAEVIDQYWDNVRKKINDAQKNLPTGVIPSIVLDDYGDVYGMFFAVTSDGYSKEELNRYVNYIKRELHSIPGVSKTTTYGKVDSAVEVVIDREKIDALGINEKLILASFISQNLPAYTNSIEHGDMKIRVDINEGFTSLKDIENLVVFSKDNLRGGEETVFLKDIATVKKSVSTPVKSKMRYNMKEAMGLMLSPEVGTSVIDTGKAIDKKLEEIKKNLPVGIEVEKVYYQPDLVTNAIGQFVNNLIASVVVVVGVLLFTMGMRSGLIIGSGLILSILGTLIYMLAVKMDMQRVSLGSFIIAMGMLVDNAIVVVDGTLTSLEKGENKYDALTKPAKKTAIPLLGATAIAVIAFLPMYLMPTDAGEYISTLFWIMAVSLGLSWVLALTQIPVFCDIFLKIDKTKESNGRKEKFYALCHTFLEKVLAHRFLSLGIVIGAFLFSMLLFTRLPITFFPDSDKKGFVVNLWLPEGTSLEKTDRVSQIVEKELLKDKDTINVTAAVGASPSRYYVATIPELQNNSFSQLIISVDKLDSVNRIGENIKRFVEENIPDTKVEVRKYVNGIPTKYPVEVRILGPDPHVLRELSKEVMDIMKAVPKAENIQTDWKNKVLTWSPVLSQNIERKNLISPLDVANSLNRATEGMTLGKYKEGTEIMPIVMREKSGGQQLEINNIGQTPVWGLGIKSLPLNRIIEKESLKWEDPEIWRRNRVRAIKVQCDISGSVTAESIRKAVEKEVNKLTLPENYKIEWGGEYYEQNKNVSAVFSSLPLQGTIMFSICVILFASLKDPFIIFAILPLSFIGIAPGLFLTGKSFGFMSIIGAISLSGMMIKNSIVLIDEIKYEINVDKKDPYTAVIDSAVSRIRPVSMASVTTIFGMLPLVFDPLYGDMAITIVFGLTASTMLTLFVVPLLYSLLYKIEKKQ
>NZ_CP028105.1|WP_005977429.1|3066983_3067268_-|CRISPR-associated-endonuclease-Cas2
MKGKNYNYIFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKLRLELKDIIDKKEDFISIVKLVSEHYFDEEIIGTPWKDDENMFI
>NZ_CP028105.1|WP_005977427.1|3067268_3068270_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGAGTKYILSKGSLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGITLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKNHKETIAKSIVQGIGKNIYELLYHYYRHDKKELKEYLEWLSNDVERRLNESNDINEIMAVEGEIWAKFYDSFKIFLREDFIMNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFECVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAVKYDAYKLIKFLLEGKEFVPFSIKEKM
>NZ_CP028105.1|WP_005977425.1|3068279_3068762_-|CRISPR-associated-protein-Cas4
MPINGTIINYFIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKKTDEITVENIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIDKKGKIEVIEKNKSSKKSYEIELTAENETYIKNIIEEIEKLVEQDELPPVEKNNKCKKCAYYSYCYI
>NZ_CP028105.1|WP_005977423.1|3068775_3071361_-|CRISPR-associated-helicase/endonuclease-Cas3
MFEEELFSIEKYVKDEDKILAHISDRKNSETLLEHSDLVVKYNKKIYEDKNLKIVFDKLAEKFFGQNETVKKFWNEMIINASCMHDIGKLNINFQIDKMRNDIFERVLLCQSKRHSNLSARIYIDYFANKLIKLCSENKLNNDDIFKCFVFIVLNSYVISRHHSSTKNLNEDFFCEITTNYERYKELFDEVNNYCPNLKLSIKASRKFFKIFEKLKINGEKWNKYVENKDWNSIDYYIYTKLLYSLLVSSDFYATSEYSSGKPIDNLNLLTNIDEYRSVFNSTEIYKGIKLHQETGKYFKKDNINCYRSEMFIEAEKNLEMVNKENIVFLEAPTGSGKTVTSVNLALRLLEKNRELNKIFYIFPFNTLVEQTNSSLREIFQNSPLEESISVINSITPIKEVESEEEYKKDNIDYERSLLNRQFIHSPIVLTTHVHFFETLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYADILNIKIIIMSATLPNLSFLLDQEAKIPSLITNREKYYSNSIFRERVSLDFCLLEKEYGREELLKKIEKIIFEKHKNQKVVVEFIKKASAFEFYKKLLESNEVCKEDIFLITGDDNKAERKRIIKEAKNKERKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKAYFFKLDDGGDIYKGDVRIQDRFTLMNEEMREILKNKNFNEYYTIILEALEKFSKDENKEENIDDFRKDKVVQLNFEEIYKRLKLIADDRRTKMIFLSRNINIEGEEILGNKVWNDFKEILLNNEMGYAERRVKLSKVMEKVDLFSYNIPVEMTRKLSYQESIGDNIRYIGDGEKYFVNGKFDRKKLQSDEDTEMIL
>NZ_CP028105.1|WP_005977421.1|3071368_3072124_-|type-I-B-CRISPR-associated-protein-Cas5
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYGGYNSQGEKEYPEFYEKLKDIKISIMPKNTNGSFSKKIQFFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKIEDTDIHKELKERMQNYNFEYTVYLGKNDHLATINDVEILQGENFLEDESEINSLFMKKSIEGFSEEEELDFLAPEEDEIKYDYKYEEKLPLSLHNISNQYVVETLIFTNKKCILKDKSNFAKVNNQIIEFY
>NZ_CP028105.1|WP_005977419.1|3072126_3073071_-|type-I-CRISPR-associated-protein-Cas7
MKNRIYGVIGIRSMMANWNADFTGFPKTTSSGEVFGSDKALKYPMKKMWESMGEKVLYIKSMKVDSGEGKKGEIGVRPKSLRERYDEIFEANLKVEKDKTNVIKNLFKAIDVKNFGATFAEEKNNVSITGAVQIGQGFNKYADTYTEEQQILSPFRDGSKDGIMGEASQSTLGTKIVSNEAHYFYPFVINPQVYRDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYIKFSKEKNCDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHDIKGAKEYNIFTRKEV
>NZ_CP028105.1|WP_005977417.1|3073073_3074858_-|hypothetical-protein
MLRECVEIFTEIYNEKGERFITDSYELEPGDYFIVKSNGSYRHTKIERTKKIEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESIEKYYEILKNPFLKYDKGEKKRVYAQLEEKLGKPSEEKIQKNYEWIKENLYKIKEEIKDGKEYIKIFFDEDIEEYKKENERYVIPNIYNSVDYNVIINDETYGLPNNNLNLNSKKPYLENKTRKEKYTVPYLLNEEEVFKQKKFFDYIYNMANSGKRNIYISSDKKEIIPLGNRESLSDDFTGYYLRIRKDKSESAIERYDIIPNYKAEIYPEIKILDCLGNGENSKLEYGISISKNFELAARLNSLLFDGKLYGMIFGELEVFDERIRNVANRYREIFFELIYKGDMKKFADNYKEIFLELIKNSLCKKDYITEAYDMFNLMTSIDDSIKKERGMTVNKHQEIKEKFRNIFETGVGEIENDEEYFFALGQLAKFLISRNKITVKTHELAVRIIENRDIEGLKREIYKLFRKYAYDIGFYSIKFNTLYERVLGYETESEKINMDRLLGGYLADSLIYEKSAKEENEANNETKETNGEENE
>NZ_CP028105.1|WP_005977415.1|3074876_3075572_-|CRISPR-associated-endoribonuclease-Cas6
MKSWILELKVFLLEDIEPYKTIEKIAAFIDSTFDKDEYWKEYHKDRKVKEYCFNSFYPVKVNTKKYNAGEIYTIQIRTISEKLKEHFMKYLKDNITKELKGLVIKEREMEYRYIDKLVSVTPTILKTENGYWKKNITLEEYENRLKLNIIKKYNSIFNEELDENIDLFNFIEFKNRVPVKVKYKNINLLGDKLVLGIAKNETAQKLAFLCLSVGLGEMNARGFSYVNPRWV
>NZ_CP028105.1|WP_005977413.1|3077474_3078086_-|hypothetical-protein
MKNFSEKTVKNISICFLLLFLLLGINHHYYFGLMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLVSAFIFYCQYYLQGEVVSTKEVIALKGTISLCIGLWLGSFIAKYIYMRIKFFINRIGSKGEQKDYKIIKMIIEQKKYFKKPGSKYYINFYYMIADVNGEEVKFLIEKDFYDKYLGKKTMNIKIKKGSLGIMYGVNLVD
>NZ_CP028105.1|WP_005977411.1|3078082_3078736_-|epoxyqueuosine-reductase-QueH
MKINYDLAMENQLQEIKKSENKPRLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFEEEYLKRLEEQKEYHKKRGYKINVVEGEYNPEIDFFQKVKGLENEREGGKRCHQCYNLRLEETAKKAQELGYDYFTTVLSISPMKNAQWINEIGEELGKKYGIKFLNGDFKKKSRYLRSIEISKEYELYRQDYCGCIFSKVEREKIEKEKKEKDGGER

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Crispr_ID: NZ_CP028105_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_8

3075778-3077293

TypeI-B

Consensus_repeat	Method
ATTTAAAAACTA-CTCAGTTAATATTCTAC	PILER-CR
ATTTAAAAACTACTCAGTTAATATTCTAC	CRISPRCasFinder
ATTTAAAAACTACTCAGTTAATATTCTAC	CRT

23 spacers

cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NZ_CP028105_8

>merge|NZ_CP028105|8|3075778-3077293|PILER-CR,CRISPRCasFinder,CRT
ATTTAAAAACTACTCAGTTAATATTCTACTCAGAAGCTTTTAAAAATCTAGAATTTGGAATATAATTTAAAAACTACTCAGTTAATATTCTACTAATTATAGTTCAGAAAATTTTAATAAAGAATTGAAATTTAAAAACTACTCAGTTAATATTCTACTGGCTACATATTTACTAGAATAATCTATAAGCGAATTTAAAAACTACTCAGTTAATATTCTACCCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTTATTTAAAAACTACTCAGTTAATATTCTACAATAACTGCCTTTCAAGAGTGCTTAATGTTAACACAATTTAAAAACTACTCAGTTAATATTCTACTGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATAATTTAAAAACTACTCAGTTAATATTCTACGTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTTATTTAAAAACTACTCAGTTAATATTCTACGTCATTGATCCACTTGCCATGGCCGTTGCTATAGAATTTAAAAACTACTCAGTTAATATTCTACAGAGAAATAATCATGGACACTCTACCCTAAATACATATTTAAAAACTACTCAGTTAATATTCTACTTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTCATTTAAAAACTACTCAGTTAATATTCTACGAACTGATATAAACGAAATTTTAAAGGTATCTACATTTAAAAACTACTCAGTTAATATTCTACGTTAGGAATAGGATTTGTTTATTTATATAAAAAATCATTTAAAAACTACTCAGTTAATATTCTACAGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTTATTTAAAAACTACTCAGTTAATATTCTACTTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAAATTTAAAAACTACTCAGTTAATATTCTACACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTTATTTAAAAACTACTCAGTTAATATTCTACAGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGCATTTAAAAACTACTCAGTTAATATTCTACTATGAAAGAGATTAAACATGATGATGAATGGCTTTGATTTAAAAACTACTCAGTTAATATTCTACATATTAAAAAATTAAATTTATAAAAAAATTAAGGAGATTTAAAAACTACTCAGTTAATATTCTACTAATAATATAAAATAATTATTTAAGAGACTAAAAAATTTAAAAACTACTCAGTTAATATTCTACGGGTAATATCCCCAGATAAACTAGCAGATATAGAAAATTTAAAAACTACTCAGTTAATATTCTACTTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAATATTTAAAAACTACTCAGTTAATATTCTACTGGAGAATATAAGTTTATAAATGCAATAGAAGTCAAATTTAAAAACTACTCAGTTAATATTCTACTCTTCACTTGTAACATTCCCAAGTGCCTCTACCCCATTTAAAAACTACTCAGTTAATATTCTAC

>NZ_CP028105|8|4|3075778-3077293|PILER-CR
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

>NZ_CP028105|8|7|3075778-3077293|CRISPRCasFinder
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

>NZ_CP028105|8|3|3075778-3077293|CRT
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005977413.1\|3077474_3078086_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977425.1\|3068279_3068762_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP028105.1\|WP_005977415.1\|3074876_3075572_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP028105.1\|WP_005977419.1\|3072126_3073071_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP028105.1\|WP_005977435.1\|3062570_3064064_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP028105.1\|WP_005977404.1\|3082643_3083825_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP028105.1\|WP_005977408.1\|3079234_3079402_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380294
NZ_CP028105.1\|WP_005977406.1\|3079858_3082657_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|235175
NZ_CP028105.1\|WP_040490702.1\|3079501_3079846_-\|ArsC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224311
NZ_CP028105.1\|WP_005977423.1\|3068775_3071361_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NZ_CP028105.1\|WP_005977400.1\|3087260_3087905_+\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP028105.1\|WP_005977433.1\|3064270_3065389_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_CP028105.1\|WP_106878599.1\|3083827_3086665_-\|ATP-dependent-helicase	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|223288
NZ_CP028105.1\|WP_005977421.1\|3071368_3072124_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP028105.1\|WP_005977402.1\|3086818_3087010_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977411.1\|3078082_3078736_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NZ_CP028105.1\|WP_005977417.1\|3073073_3074858_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP028105.1\|WP_005977429.1\|3066983_3067268_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP028105.1\|WP_005977427.1\|3067268_3068270_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP028105.1\|WP_005977409.1\|3078813_3079242_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005977425.1\|3068279_3068762_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.0742e-50
NZ_CP028105.1\|WP_005977415.1\|3074876_3075572_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.69572e-12
NZ_CP028105.1\|WP_005977419.1\|3072126_3073071_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.3397e-47
NZ_CP028105.1\|WP_005977435.1\|3062570_3064064_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP028105.1\|WP_005977404.1\|3082643_3083825_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	4.15106e-40
NZ_CP028105.1\|WP_005977408.1\|3079234_3079402_-\|hypothetical-protein	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	0.000514978
NZ_CP028105.1\|WP_005977406.1\|3079858_3082657_-\|AAA-family-ATPase	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	3.81859e-37
NZ_CP028105.1\|WP_040490702.1\|3079501_3079846_-\|ArsC-family-transcriptional-regulator	gnl\|CDD\|224311	COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism].	1.9344e-23
NZ_CP028105.1\|WP_005977423.1\|3068775_3071361_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.15479e-32
NZ_CP028105.1\|WP_005977433.1\|3064270_3065389_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	1.79162e-08
NZ_CP028105.1\|WP_106878599.1\|3083827_3086665_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.3067e-93
NZ_CP028105.1\|WP_005977421.1\|3071368_3072124_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	7.66148e-49
NZ_CP028105.1\|WP_005977400.1\|3087260_3087905_+\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.45478e-18
NZ_CP028105.1\|WP_005977411.1\|3078082_3078736_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	5.03367e-100
NZ_CP028105.1\|WP_005977417.1\|3073073_3074858_-\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.86199e-09
NZ_CP028105.1\|WP_005977429.1\|3066983_3067268_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.31304e-26
NZ_CP028105.1\|WP_005977427.1\|3067268_3068270_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.31277e-145
NZ_CP028105.1\|WP_005977409.1\|3078813_3079242_-\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	2.44949e-46

>NZ_CP028105.1|WP_005977415.1|3074876_3075572_-|CRISPR-associated-endoribonuclease-Cas6
MKSWILELKVFLLEDIEPYKTIEKIAAFIDSTFDKDEYWKEYHKDRKVKEYCFNSFYPVKVNTKKYNAGEIYTIQIRTISEKLKEHFMKYLKDNITKELKGLVIKEREMEYRYIDKLVSVTPTILKTENGYWKKNITLEEYENRLKLNIIKKYNSIFNEELDENIDLFNFIEFKNRVPVKVKYKNINLLGDKLVLGIAKNETAQKLAFLCLSVGLGEMNARGFSYVNPRWV
>NZ_CP028105.1|WP_005977417.1|3073073_3074858_-|hypothetical-protein
MLRECVEIFTEIYNEKGERFITDSYELEPGDYFIVKSNGSYRHTKIERTKKIEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESIEKYYEILKNPFLKYDKGEKKRVYAQLEEKLGKPSEEKIQKNYEWIKENLYKIKEEIKDGKEYIKIFFDEDIEEYKKENERYVIPNIYNSVDYNVIINDETYGLPNNNLNLNSKKPYLENKTRKEKYTVPYLLNEEEVFKQKKFFDYIYNMANSGKRNIYISSDKKEIIPLGNRESLSDDFTGYYLRIRKDKSESAIERYDIIPNYKAEIYPEIKILDCLGNGENSKLEYGISISKNFELAARLNSLLFDGKLYGMIFGELEVFDERIRNVANRYREIFFELIYKGDMKKFADNYKEIFLELIKNSLCKKDYITEAYDMFNLMTSIDDSIKKERGMTVNKHQEIKEKFRNIFETGVGEIENDEEYFFALGQLAKFLISRNKITVKTHELAVRIIENRDIEGLKREIYKLFRKYAYDIGFYSIKFNTLYERVLGYETESEKINMDRLLGGYLADSLIYEKSAKEENEANNETKETNGEENE
>NZ_CP028105.1|WP_005977419.1|3072126_3073071_-|type-I-CRISPR-associated-protein-Cas7
MKNRIYGVIGIRSMMANWNADFTGFPKTTSSGEVFGSDKALKYPMKKMWESMGEKVLYIKSMKVDSGEGKKGEIGVRPKSLRERYDEIFEANLKVEKDKTNVIKNLFKAIDVKNFGATFAEEKNNVSITGAVQIGQGFNKYADTYTEEQQILSPFRDGSKDGIMGEASQSTLGTKIVSNEAHYFYPFVINPQVYRDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYIKFSKEKNCDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHDIKGAKEYNIFTRKEV
>NZ_CP028105.1|WP_005977421.1|3071368_3072124_-|type-I-B-CRISPR-associated-protein-Cas5
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYGGYNSQGEKEYPEFYEKLKDIKISIMPKNTNGSFSKKIQFFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKIEDTDIHKELKERMQNYNFEYTVYLGKNDHLATINDVEILQGENFLEDESEINSLFMKKSIEGFSEEEELDFLAPEEDEIKYDYKYEEKLPLSLHNISNQYVVETLIFTNKKCILKDKSNFAKVNNQIIEFY
>NZ_CP028105.1|WP_005977423.1|3068775_3071361_-|CRISPR-associated-helicase/endonuclease-Cas3
MFEEELFSIEKYVKDEDKILAHISDRKNSETLLEHSDLVVKYNKKIYEDKNLKIVFDKLAEKFFGQNETVKKFWNEMIINASCMHDIGKLNINFQIDKMRNDIFERVLLCQSKRHSNLSARIYIDYFANKLIKLCSENKLNNDDIFKCFVFIVLNSYVISRHHSSTKNLNEDFFCEITTNYERYKELFDEVNNYCPNLKLSIKASRKFFKIFEKLKINGEKWNKYVENKDWNSIDYYIYTKLLYSLLVSSDFYATSEYSSGKPIDNLNLLTNIDEYRSVFNSTEIYKGIKLHQETGKYFKKDNINCYRSEMFIEAEKNLEMVNKENIVFLEAPTGSGKTVTSVNLALRLLEKNRELNKIFYIFPFNTLVEQTNSSLREIFQNSPLEESISVINSITPIKEVESEEEYKKDNIDYERSLLNRQFIHSPIVLTTHVHFFETLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYADILNIKIIIMSATLPNLSFLLDQEAKIPSLITNREKYYSNSIFRERVSLDFCLLEKEYGREELLKKIEKIIFEKHKNQKVVVEFIKKASAFEFYKKLLESNEVCKEDIFLITGDDNKAERKRIIKEAKNKERKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKAYFFKLDDGGDIYKGDVRIQDRFTLMNEEMREILKNKNFNEYYTIILEALEKFSKDENKEENIDDFRKDKVVQLNFEEIYKRLKLIADDRRTKMIFLSRNINIEGEEILGNKVWNDFKEILLNNEMGYAERRVKLSKVMEKVDLFSYNIPVEMTRKLSYQESIGDNIRYIGDGEKYFVNGKFDRKKLQSDEDTEMIL
>NZ_CP028105.1|WP_005977425.1|3068279_3068762_-|CRISPR-associated-protein-Cas4
MPINGTIINYFIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKKTDEITVENIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIDKKGKIEVIEKNKSSKKSYEIELTAENETYIKNIIEEIEKLVEQDELPPVEKNNKCKKCAYYSYCYI
>NZ_CP028105.1|WP_005977427.1|3067268_3068270_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGAGTKYILSKGSLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGITLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKNHKETIAKSIVQGIGKNIYELLYHYYRHDKKELKEYLEWLSNDVERRLNESNDINEIMAVEGEIWAKFYDSFKIFLREDFIMNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFECVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAVKYDAYKLIKFLLEGKEFVPFSIKEKM
>NZ_CP028105.1|WP_005977429.1|3066983_3067268_-|CRISPR-associated-endonuclease-Cas2
MKGKNYNYIFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKLRLELKDIIDKKEDFISIVKLVSEHYFDEEIIGTPWKDDENMFI
>NZ_CP028105.1|WP_005977433.1|3064270_3065389_+|helix-turn-helix-domain-containing-protein
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGVSYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEFIEQICRESKETKISKLYSFCKEKLSSKYNISYPTFYRIVSNLDGFFNKSSSLHMKKIKKENQVYLVLEIPLYILVSEEESEHKIVPQLLISIDVATLKPINHALNYNTSSIYTLLSFIRESMLKVSVKSGKLVKPQEILVSSENINNKKILKEIYDSTSIKITEYFSENEEIRKFVSFLEEDIEKFYYQNNKILSYQNLKSFLDSYIYLDNQKYDFALKYEMIEVIPSIRELDIFLQEASRKISKSSLRFNNFIYTNNSLNTLEGKKVIVKYSPLDTEILYLFFRNQFLGTANISAG
>NZ_CP028105.1|WP_005977435.1|3062570_3064064_-|PTS-transporter-subunit-EIIC
MKIFAEVQKIGKALMTPVAILPAAGLFLAFGNKLQFTLMEQAGQVIFSNLPLLFAIGAAIGLVGGDGVAALSAVVAILIMNTTMGIVSGAAAGIAAGDMSYAMVLGIPTLQTGVFGGLIAGIIAAVCYKKFYKTELPAFLGFFAGKRLVPIVTAVAAFVIGLAMPVIWQPVQIGLAKLSYLANETNTNVSTFIFGVIERSLIPFGLHHIFYAPFWYQFGEYTNAAGQVVNGDQAIWFAMLKDGVTNFSSATYQGAGKFLTGKFVFMMFGLPAAALAMYQEAKPANKKLVGGILFSAALTSFLTGITEPLEFSFLFVAPILYGIHCIFAGLSFMLMNMLNVRIGMTFSGGLIDYIAFGVLPGTSGFQNNWYLVIVVGLCLSVVYFFGFRFAIRKFNLMTPGREDAVIEEVSASGNEIKSDELAVGVLEALGGKDNLVSLDSCITRLRVEVKDTKTVSDKDLKKLGASGVLKVGTNGVQAIFGSKAQFICNDLKKMTGI
>NZ_CP028105.1|WP_005977413.1|3077474_3078086_-|hypothetical-protein
MKNFSEKTVKNISICFLLLFLLLGINHHYYFGLMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLVSAFIFYCQYYLQGEVVSTKEVIALKGTISLCIGLWLGSFIAKYIYMRIKFFINRIGSKGEQKDYKIIKMIIEQKKYFKKPGSKYYINFYYMIADVNGEEVKFLIEKDFYDKYLGKKTMNIKIKKGSLGIMYGVNLVD
>NZ_CP028105.1|WP_005977411.1|3078082_3078736_-|epoxyqueuosine-reductase-QueH
MKINYDLAMENQLQEIKKSENKPRLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFEEEYLKRLEEQKEYHKKRGYKINVVEGEYNPEIDFFQKVKGLENEREGGKRCHQCYNLRLEETAKKAQELGYDYFTTVLSISPMKNAQWINEIGEELGKKYGIKFLNGDFKKKSRYLRSIEISKEYELYRQDYCGCIFSKVEREKIEKEKKEKDGGER
>NZ_CP028105.1|WP_005977409.1|3078813_3079242_-|N-acetyltransferase
MIRNLRNDDIDIVMELWKESTMEAQNFIPDEYWLENYDNVKNNYLPNSDTYVSEEDGEIKGFVSLIENIFIGGLFLKVDCQRKGIGSKIIDFLKADHDKLQLAVYDRNVRAMNFYLKSGFKITNTEIDEKTNEKEHLMEWKR
>NZ_CP028105.1|WP_005977408.1|3079234_3079402_-|hypothetical-protein
MSKEEIEKLEKMIDELKEELHECDYEPERNALLKKYKKLSAQIEELKKMKKEKND
>NZ_CP028105.1|WP_040490702.1|3079501_3079846_-|ArsC-family-transcriptional-regulator
MIIQIFGKKNCNDSKKAERFFKERGIKIQFINLKEKAPSKGELKSIINKYPLEELIDTEGTEYKKRNLQYMVFDLEETLLENPILFKSPIGRFKNEATLGYQPEIWKEWIAKLK
>NZ_CP028105.1|WP_005977406.1|3079858_3082657_-|AAA-family-ATPase
MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREAIKYGKKSAKIEIEFTGIDGEEYIVTRKIPGATSIYKKDNPELQLVGKEERIRELCGIKGDLKGIYDNVIVAKQNEFISSFKEKDNEREKIFNKVFNTDIYKKIYEGYSRDAVNKYEKDIEIEKNSMENISEIMEDPADIKEKLDFEKERAKEYNLSLNLLNEEKNKIKELLNKYNITNLEIEKLTGEINALSENIKNKNEELGKISASIKESEISEKIVKENKEKYEEYQKYSLEINRLKIRKKELEKIKEECLLKEKEINILEKLNSEIDGEIKVFENKKENNESLLLERKNKLFEIEKEIIEKKEKAVEYKSELDKIIPLLVKLEEFERKLEAGENNIRTFEIKLEEKLEEINKEKAKREYLTDENLDKQLSGIEESEKKKKILEDDILKKELLLKENEEAFEMLKTSYCPYLKEQCKNLDGKNIDEYFKDKREKYIEEIESKKNSVKEINENLTNKNEIIEKIIRLDTLSKEITEKEVEFIQEKLKLETGKSKIENEKLKLKNFKLENSIENKEKLSEIKITLKTKIDNLDLEKSEAVKNELEKEIDSLNKSIGMELKNIELQNIEIRKNIESIDEKRKFINDNRIFSDELLSINEKIDKIEKKIDTLENSNNLYLENYKKAMEKSKLEKNLESIKTTIKNSEMRFQEKNILIKLKREEMEKIDLKTLQEKDLKVTFDIEEIREKLGAVNREIENLKMKLDEIKKYEDLLKNKRKYLEKLNMKLELTKIFREKIKSMGKEVSKNMLKEIEILATENFRKITGRGEKIVWSNEDKNKYVVFLDGDRGELKFEQLSGGEQVAVAISIRGAMSELFTESKFSIFDEPTNNLDTERRRSLADSIGEILKNLEQSIIVTHDDTFREMAQKVIEL
>NZ_CP028105.1|WP_005977404.1|3082643_3083825_-|exonuclease-SbcCD-subunit-D
MKILHCSDIHLGKRPFGTKEFSQKRYLDFFNAFEQSADRGIEKKVDVFLITGDLFDKKELSPDTLDRCEKVFLKLKNNNIQVLLIEGNHDNISGYDEINSWLGYLERKGYVRRGKYKASNEGYDFEKITIEDVNFYGVGYPGFAVDEVLEKLSENLDENEKNIVMVHTALGGSEFLPGLVNTDIIKKFKDKVIYMAGGHLHSFVSYPKDNPYFFIPGSTEFWNVLNEKNNSKGVIIFDTDTLEYEFSELSPRKRIEKEFIYEGDILQEFEEFTKALELTGEELVIVNVKLKDSGYINVNELEKILENSGALKGYIKLRYPNSIFDRNLGEEGCYSVRDVEKEIINQWEEFSDAEKVTAYLQKFKEYQEENDREKDFFELFDAMLEEEIGNENK
>NZ_CP028105.1|WP_106878599.1|3083827_3086665_-|ATP-dependent-helicase
MENREINLNREQKAAVTHTEGPLLVIAGPGSGKTRTLVERVVHMLTEKEISPEKIMVSTFTDRASKELIGRISERIKDYDLKVNINDIYMGTLHSICLRLIDEYIEYSDFSEGYQVLDELEQHFFIFSKTKEFKELEGYNEFFKEIPSANNWGKAGKIQKWVNRINEEGRSLDYVKEEQDKKITFLKNAHELYQKLLIEDNVIDFASIQREIYRMLLNNEIVAEEIREKIQYIMIDEYQDTNSIQEKIIFELGGTRKNICVVGDDDQGIYRFRGASVKNILEFPEKFEENQCKIITLDINYRSHRDIITFCNRWISLINWKNFRYQKDIQPPPEKEFVDNPGVIRIGGGSETQWKENIYKFIKNLKTTGKIEDYSQVAFLFKSVRFSRVKELIDYLEDRGIPAYSPRSKNFFYRNEVKLVLGALLVLFPQSKPLVLDDVYIRKTAAYYNDCINVLKKHLSKDKELYEWILKKREENRDLGEEKSENISRIFYSLFEFKTFKELIDLNKNGAKEGREIYNLGILSQIFDKFENLSRIEYITKENIEKVVRYLFVTHIRLLFEKGIDEYENKETLLGAVSFMTIHQAKGLEFPVVIVGSLESEPDNREPTEEDRLEDIITLGNDFEPKDRKNIFDFWRVFYTAFSRAQNLLVLTSIENRAGGKELPSKIFKPVYETIPYWNDESFHFERLQISKLKEADTKEFLSYTGHILIYEDCPLRYRFYKEFEFKPLKTNKTSFGILVHKSIENIHKEVKADTEKKYSDEELKELIEKNYNMLKKNIRVFLGENIRERAFEQIKRYVDSAENNWANIISSEEKEYSVENSYILEGTIDLLRKQGDKIELIDFKTGRFSGYEDARYISYERQIEIYSHMLREKYDLENLKAYLYYTGNRNEPMVEIPLKKDKIDKTISNFDNTVKKILNKEFNRREYSEEKCSECEFKDYCRGE
>NZ_CP028105.1|WP_005977402.1|3086818_3087010_+|hypothetical-protein
MKEHKYVNFSQDYDVNYIINRYPKKAHDTVKEYLETLKSQKNLTHEDVFSLIEKNLKLKKITK
>NZ_CP028105.1|WP_005977400.1|3087260_3087905_+|DUF1275-domain-containing-protein
MLCFLGGYINAICIVKYSYTVSHFTGNISKAAINISQGNFSEVFKVLTILIAFVIGTTISGSLVDGREFNLKRRYGYASIILGTGLLVLYSFLYDTLPFFYYLPFMVGVENGLFISYKGVVVRTSHITGSLTDMGVYIGHCIKGKTEDKWKVYFCLFTILAFMAGGFFGIEAFYIFKKEAFLIAAFLYIGVGLTYFTIRQRYQKVIGYPDLKLY

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Crispr_ID: NZ_CP028105_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028105_9

3205622-3206689

Orphan

Consensus_repeat	Method
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CRISPRCasFinder
TTGAATANNAACCTNNNNNGTTTTTAAAT	CRT
ATTTAAAAACTT-ATGAGTTGATATTCAAT	PILER-CR

16 spacers

The CRISPR arrays of NZ_CP028105_9

>merge|NZ_CP028105|9|3205622-3206689|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTCATTGAATAGTAACCTTTGGGGTTTTTAAATTAAAATACATGGAAAATATTTATGAATTAAAAAATAATTGAATAGTAACCTTTGGGGTTTTTAAATCAAGCAATTAAAAAACAAATTAAATCTTTATTAGGATTGAATAGTAACCTTTGGGGTTTTTAAATCTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTTATTGAATAGTAACCTTTGGGGTTTTTAAATGAAGCTTTATGAATTTAGTATCTACTCCCTTAAATCATTGAATAGTAACCTTTGGGGTTTTTAAATTCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGTATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAATGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAATTGAATATCAACTGATAAGTTTTTAAATGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTATTGAATATCAACTGATAAGTTTTTAAATAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTATTGAATATCAACTTTTAAATGGAGAAGGGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACTGATAAGTTTTTAAATGCATTAGTTGGTAAAACTTTAAAATTAACTTCAGTATTGAATATCAACTCATAAGTTTTTAAACAGATATAGCATGATTCCAAGTTATGTAATAACTCATTGAATATCAACTGATAAGTTTTTAAATACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAAATTGAATATCAACTCATAAGTTTTTAAATGATCAAGAAAGATTAAATAAAGTTGGAATTATGACTAATTGAATATCAACTCATAAGTTTTCTCCC

>NZ_CP028105|9|5|3205622-3206048|PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAATGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAATTGAATATCAACTGATAAGTTTTTAAATGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTATTGAATATCAACTGATAAGTTTTTAAATAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTATTGAATATCAACTTTTAAATGGAGAAGGGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACTGATAAGTTTTTAAAT	GCATTAGTTGGTAAAACTTTAAAATTAACTTCAGT
ATTGAATATCAACTCATAAGTTTTTAAAC	AGATATAGCATGATTCCAAGTTATGTAATAACTC
ATTGAATATCAACTGATAAGTTTTTAAAT	ACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAA


>NZ_CP028105|9|8|3205622-3206114|CRISPRCasFinder
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTGTTATCTTAATACTTCCATCTTCATTATAATGCA
ATTGAATAGTAACCTGATAAGTTTTTAAAT

>NZ_CP028105|9|4|3205624-3206689|CRT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTCAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATAAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGGAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTTAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATCAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGTAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TTGTTATCTTAATACTTCCATCTTCATTATAATGCAAT
TGAATAGTAACCTGATAAGTTTTTAAAT	ATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAA
TTGAATATCAACTGATAAGTTTTTAAAT	GAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAA
TTGAATATCAACTGATAAGTTTTTAAAT	GAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTA
TTGAATATCAACTGATAAGTTTTTAAAT	AGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTA
TTGAATATCAACTTTTAAATGGAGAAGG	GGCAAGGGTGATGATGGATACTAACCCTA
TTGAATATCAACTGATAAGTTTTTAAAT	GCATTAGTTGGTAAAACTTTAAAATTAACTTCAGTA
TTGAATATCAACTCATAAGTTTTTAAAC	AGATATAGCATGATTCCAAGTTATGTAATAACTCA
TTGAATATCAACTGATAAGTTTTTAAAT	ACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAAA
TTGAATATCAACTCATAAGTTTTTAAAT	GATCAAGAAAGATTAAATAAAGTTGGAATTATGACTAA
TTGAATATCAACTCATAAGTTTTCTCCC

>NZ_CP028105|9|6|3206402-3206623|PILER-CR
	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAATGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAATTGAATATCAACTGATAAGTTTTTAAATGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTATTGAATATCAACTGATAAGTTTTTAAATAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTATTGAATATCAACTTTTAAATGGAGAAGGGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACTGATAAGTTTTTAAAT	GCATTAGTTGGTAAAACTTTAAAATTAACTTCAGT
ATTGAATATCAACTCATAAGTTTTTAAAC	AGATATAGCATGATTCCAAGTTATGTAATAACTC
ATTGAATATCAACTGATAAGTTTTTAAAT	ACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAA
ATTGAATATCAACTCATAAGTTTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028105.1\|WP_005977223.1\|3206804_3207278_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|366867
NZ_CP028105.1\|WP_005977234.1\|3200075_3200339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977219.1\|3208250_3209582_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP028105.1\|WP_005977242.1\|3196640_3197402_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP028105.1\|WP_005977227.1\|3203283_3204306_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
NZ_CP028105.1\|WP_005977244.1\|3196380_3196632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977221.1\|3207496_3207703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977209.1\|3214185_3214956_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP028105.1\|WP_005977238.1\|3198357_3199410_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP028105.1\|WP_005977236.1\|3199460_3199817_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|107209
NZ_CP028105.1\|WP_005977217.1\|3209706_3210501_+\|FAD-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224238
NZ_CP028105.1\|WP_005977229.1\|3201585_3203268_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP028105.1\|WP_005977231.1\|3200507_3201572_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP028105.1\|WP_005977240.1\|3197564_3198212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028105.1\|WP_005977213.1\|3210954_3213198_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236637
NZ_CP028105.1\|WP_005977207.1\|3214973_3215600_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP028105.1\|WP_172453957.1\|3215604_3216255_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP028105.1\|WP_005977215.1\|3210500_3210971_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP028105.1\|WP_005977225.1\|3204459_3205185_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP028105.1\|WP_005977211.1\|3213291_3213858_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705

Protein	Function_ID	Function_description	E-value
NZ_CP028105.1\|WP_005977223.1\|3206804_3207278_-\|HD-domain-containing-protein	gnl\|CDD\|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	7.73881e-06
NZ_CP028105.1\|WP_005977209.1\|3214185_3214956_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.02115e-110
NZ_CP028105.1\|WP_005977219.1\|3208250_3209582_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.43643e-132
NZ_CP028105.1\|WP_005977242.1\|3196640_3197402_-\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.15344e-165
NZ_CP028105.1\|WP_005977227.1\|3203283_3204306_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.62966e-152
NZ_CP028105.1\|WP_005977215.1\|3210500_3210971_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	7.10683e-48
NZ_CP028105.1\|WP_005977238.1\|3198357_3199410_+\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	1.44976e-127
NZ_CP028105.1\|WP_005977236.1\|3199460_3199817_+\|hypothetical-protein	gnl\|CDD\|107209	cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.	0.00439424
NZ_CP028105.1\|WP_005977217.1\|3209706_3210501_+\|FAD-binding-domain-containing-protein	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.98528e-32
NZ_CP028105.1\|WP_005977229.1\|3201585_3203268_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	5.94342e-112
NZ_CP028105.1\|WP_005977231.1\|3200507_3201572_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.50554e-153
NZ_CP028105.1\|WP_005977213.1\|3210954_3213198_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|236637	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.	0
NZ_CP028105.1\|WP_005977207.1\|3214973_3215600_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.44538e-70
NZ_CP028105.1\|WP_172453957.1\|3215604_3216255_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.92607e-116
NZ_CP028105.1\|WP_005977225.1\|3204459_3205185_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.1127e-80
NZ_CP028105.1\|WP_005977211.1\|3213291_3213858_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	5.65613e-103

>NZ_CP028105.1|WP_005977225.1|3204459_3205185_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MRPIIGITTFREMREKGEYNSINYGYAEAVLAAGGLPLFIPIVPEGVAKEYLEDYRLDGIIFSGGADVAPRFYGEDPGLQIPGIDTKRDIMEFELLEEAVKRKIPVLGICRGHQLINVAFDGTLYQDIDTQVQSAMGHHPSQISRDELFHSVSIKKESVLHDIFGDEKIYVNSFHHQAVKKLGRGLKATAFSCEGIVEAFETVDMNERFVLGIQWHPENLVNRYNEFLGIFKLLVDRAKEK
>NZ_CP028105.1|WP_005977227.1|3203283_3204306_-|ABC-transporter-substrate-binding-protein
MKRLSTIVATFLLSLTTIFAAGEKETGHLLIYAGLMEDHAIAAVKEFEKETGIKTEFVRMSSGETLARIRAEKDNMTASVWFGGPIDAFVAANEENLVEPYISPVAKDIPDKFKDPNGIWTGIYVGYLGFVGNKEVLEEIGAEMPKSWADLLKPEYKGEIVTAHPGSSGTAFTMLATIIQLKGEKDGMAYMQKLNEQVRQYTKSGTAPGRMVGLGETAIGITFLHDAIKYRKEGYEDIIISAPEEGTGFEIGGVAILKNGPDQASAKKFVDWALSKKAQELGQTVGSYQFLTNQTANAPEDVKEIAGTKLIDYNFDWAGKNRKDLLDKFSTATKTTAPTK
>NZ_CP028105.1|WP_005977229.1|3201585_3203268_-|iron-ABC-transporter-permease
MSNLQLKINTELKNMKKIFNDPILFSTITFILVILIMFILFPMYNILKESFTYKGEFSLIHYKNIKAMQENFIIILNTLKLGVVTSVISTAIGFFFAYGMTYVKLPFRKFFSSIAILPIVSPPFVIALSAILLLGRRGFITRNLLGIRNAEIYGFHGLVLVQVLTFFPVAYLMLVGLLQKIDPSVEEASRDLGASRWDVFRTITFPLMIPGLANAILVIFIQAIADFGNPMVIGGNFTTVAVQIYLQGIGNYDMGSATALAVVLILMSISIFVTQKYYISKKSYVTVTGKVSREREKISEKNITMPIFIVMAFLTFWVFLMYIMIPIGSFVRLWGVKYDFSLEHYKYVFALGMKPIWDTTFLSIISTPITGILAMIIAFLIVRKKFLGKGFIEFITMMAIAIPGTIVGLGYIITFNTKPLVLTGTATILIIAFIMRNMPIGIRSGIAALQQIDPSIEEAATVLGANSKKVFTSVTLPMIKPAFFSGLVYAFVRSMTLVSTIIFLVSAKYNLLTVAIMNQIDVGKIGVASAYCTILIIIVFFVIGIMTYILKKMGIDSISE
>NZ_CP028105.1|WP_005977231.1|3200507_3201572_-|ABC-transporter-ATP-binding-protein
MGAKRVKFENINKTFLTGDNRRVQAVADLNLDIKAGEFVCLLGPSGCGKTTILRMLAGFEVPTEGHIYIGDENVERITPDKRDTAMVFQNYALFPHMNVYDNIAYGLKLQKLPKSEVDERVHRILKMMNMEDFAERVPSQMSGGQQQRVSLARALVMEPGVLLFDEPLSNLDAKLRIHMRDEIRKIQQQVGITSIYVTHDQAEAMGLADKVIIMKEGRIQQAGSPIEVYQNPVNEFVANFIGRANIFTGKLVYKTDNKCTIDVYGVRYEVPQKVNHNIGDEIKIVARPESIIISKDDFKGRVTKSMFMGAYHEYEVMFQDLKVEISVSNPRGKKSYALDSELDFSLDVESIHIL
>NZ_CP028105.1|WP_005977234.1|3200075_3200339_+|hypothetical-protein
MFRSLIIFALTFLLVVFGLEYLMPPFGTIVYLNPVEIVGSITYSIAYVTGMSVKLSMFLAIAFISIIPLIVVIAVNRICKKKKKRRF
>NZ_CP028105.1|WP_005977236.1|3199460_3199817_+|hypothetical-protein
MNINFKLGSSTGKAGILSIECQKLNIPCVIVVFRNVLNYPNSVQIFKLKSKPKDESAEIKAVEEICKVADKYAITLVMKLALRNRKHLIETFAKFGFKTKKSWLGNCPELIREHHSLD
>NZ_CP028105.1|WP_005977238.1|3198357_3199410_+|DNA-polymerase-IV
MKKDRVVLHYDMDSYYASIEIRDNPRLLNKPLVVGGSIVTTASYEARKFGIHSAMKVSDAKKLCPSLLVVPPNKEKYSEISRKIHSLVLRLTHKIEFIALDEGYIDVSDIIDLYPSKEFFAKKFRERIKYHTGLTCSIGIGFNKLSAKLASNINKPSGQYIFTSPLDFTKYISDKNIGIIPGVGKKLSALLAKDSILKVKDIYPYSLAFLCSSYGKSRGELLYSASRGIDYREVEYKKPTHSIGNENTFKYPLNTELEIRREFDDLFEHSYRRLLKDEFISKTVILKIRFSSNETITRSKTLEIPTDSHEKLKKVSDDLLENVDLKDSIRLLGVSFGNLTKKSVRQLAFF
>NZ_CP028105.1|WP_005977240.1|3197564_3198212_+|hypothetical-protein
MKNLKSIIDTLNSEDENNEVIKEVLEILLAFSNLKISVMEKEIKENLISGTFIGSDFKVPISHILSTYSGQIVKNSENENTIIDNVFASLAEVFYCNKDMIDSIMKNVEKKLIEFIQEEDKEIKFSFLVLENINIVRYDLTFYIKSLKSKKIREKVQSNLSYFVVKSSVNVRQLPFNDFSALCIEVLTKYFGEDQNKIRTNLAEMRDAYSIINLS
>NZ_CP028105.1|WP_005977242.1|3196640_3197402_-|exodeoxyribonuclease-III
MKLISWNVNGLRAAVQKGFLDYFKNENADIFCVQETKLQEGQIELELEGYHQYWNYAEKKGYSGTAIFTKKKPIEVSYGLGIEEHDKEGRVITLEYDDFYMITVYTPNSQEELARLSYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAKFTELLKNGFVDSFRHFYPELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETLGSDHCPVVLKLKKEF
>NZ_CP028105.1|WP_005977244.1|3196380_3196632_-|hypothetical-protein
MASENFAKFCEVWDREQPVPEDRYRFFEIMNCVMIFFLTPEDVKNINEFFKKNGSFDEKRPIHEEIVVDEIHYNGNYMIKIGE
>NZ_CP028105.1|WP_005977223.1|3206804_3207278_-|HD-domain-containing-protein
MDRIEKIRGYIDEVLLNNKNIMERRNGYIHLYGVAQLSVILAKKRNLNQEIAIMAGMLHDIYTYKFEYSKDHGQKGAIMAREILEKLQVATSTEIDIICTAIHNHSNKERIDSEYDELLKDADVLQHCIYNPLILVKNHELKRYNDLLMELDILFNK
>NZ_CP028105.1|WP_005977221.1|3207496_3207703_+|hypothetical-protein
MTLLKKFKDKKVHIILNTTDKISFDGKIIDEFDNFIEVITDYSQYANHQQHILNKNLILQIYEYKEEY
>NZ_CP028105.1|WP_005977219.1|3208250_3209582_+|purine-permease
MRNTSPYDLDGIPVLREAIPLGLQHILAMFVSNITPLIIVAGAMKMPSETKTFLIQCTMLVAGVNTLIQAYRIGPIGARLPIVVGTSFAFVPVALSIGSKYGYEGILGAALVGAVFEIFIGAIIKKIRRYFPPVVTGVIVLSIGLSLLPVGVSNFAGGVGAADFGSFPNLFIGMVVLITVIFFKQFTKGITSTGSIFVGTVVGFIVAFFMGKVDLTPVRNAAFMSFPRPFTYGLAFHADACLAMIMMFIVSAVETVGDMSGVTMGGANREVTDKELSGGILADGFGSALASVFSVLPTTSFSQNTGIVAMTGIMSRFVVGTGAAFLVAGAFFPKIGAVLSIVPASVLGGSLVMIFAMISISGINLITKEPLVGRNAVILSVSLGLGYGLGSVPAALKYFPASIQLIFGGSGIVVSGSIAVLLNIILPLDEKVKKTLKGEKVSQ
>NZ_CP028105.1|WP_005977217.1|3209706_3210501_+|FAD-binding-domain-containing-protein
MFSFSKYFPAQSLQEAYDELLKSKKNIILGGTSYLRMENTSYNTAIDLSSLSLDYIKEEGEYIHIGAMVSFREIETNPIILNLFDGILSKSVESIIGVQFRNNVTVGATVFSKYGFSDLIPALLSLDTVVVLFNGGEISLEEYLSTEGKTRDILVEIKIRKAAGKGAFQSIRKSKTDYAITNTAVTNENGNFRIAIGVRPGKAKLAHKAMELLNNSDNITDEVIDRACALITEEITFGSNMRGSSEYRAAISKVMTKRAIKEVL
>NZ_CP028105.1|WP_005977215.1|3210500_3210971_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MLLTLTVNGLKRELLISEDEYLLDTLRKAGYLSVKRGCDTGSCGLCTVLVDDKPVLSCSTLAARMNNKKITTIEGCQEEAAKFANFMADEGAEQCGYCAPGFTLTVLAMMKEYKNPTDEEILHYLNGNLCRCSGYVSQLRAIKNFMEAEKSNENSK
>NZ_CP028105.1|WP_005977213.1|3210954_3213198_+|molybdopterin-dependent-oxidoreductase
MKIVNKSIKKIDSIGVITGRPLYTDDLVINSNSLIVKLLRSPHAYAKIIEIDTSIAKKVPGVEAVYTHHDVPNTMFTLAGQSYPEPSPYDRKILSEYVRYVGDPVAIIAAVDEKTAEKAMKLIKVKYEVLEAVVDYEKALDSDILVHPEDVHINFPIGFDNKRNLASSYLETKGDVEKGFEESDVIIEKTYYTQPQIHAMMETYRTACYLDAHGRLTVVSSTQIPFHVRRHLARALEMPSSRIRVIKPKIGGGFGGKQTSVCEIYPAFVTMKTGKPSKIIYSRKETQAYSNTRHAMRLKVKIGSDKEGNIKAIDINVLSNTGAYGEHAPTVTSLVVYKTFPLYAKVPMRCKADIVYSNTMVGAAFRGYGATQGTFAVESAVNELAHKLGIDPTEIRMKNLVDHSDKVSGDIKKCISIGKEAFDWENRTVKDMGNGKVRASGMAVTMQGSGIANVDTASATLKLHDSGDYTLYMGVTDMGQGCDTVLAQMASEILEVPVEKIIVNTADTDTSPYDPGAYASSGTYVTGNAVILAAEKMKKEIMDMASKLMNTSVEELEYLGESVQDKNGNKLSLRDIGERAVSFEGKNQIITTATWGGATSPPPFIASFAEVEVDTLTGNTEVIDFLSVVDCGTPINPALAQVQVEGGIAQGIGLALYEDIQFDEKGKVKHDTLMQYKIPSRKDLGNINVIFSYSNEPTGPFGAKSIGEVVINTASPAIADAIYNATKARVRSLPITSEKLFWEIQSK
>NZ_CP028105.1|WP_005977211.1|3213291_3213858_+|xanthine-phosphoribosyltransferase
MKLLKEYIEKNGKAIGTNILKVDSFLNHQIDPNLMMAMGEEFKRRFEDQGVNKILTIEASGIAIGLAAAYAFNVPLVFAKKKIPSTMGDFYTANVFSFTKNKDYTICVAKEFLKPTDRVLIVDDFLAMGNAVLGLKSLVESAGAEVIGAGIAVEKGFQQGEKLLIDNGVKVEALAVVDSLENGVIKFR
>NZ_CP028105.1|WP_005977209.1|3214185_3214956_+|amino-acid-ABC-transporter-substrate-binding-protein
MKKLFMAVLVIMILASVSLFAADGSLEKVKKDGYFTVGLDATFAPMGFRDENEEIVGFDIDLAKEVAKRMGVEAKFKPCEWDGIIFDLRSKNIDMVWNGMTITEQRSKQAAFTTPYLVDGQIIFSRKGNEINKVSELEGKVVGVQLGSSGSQAVERNAIAPKLKEIKKYATNVEALLDLEAGRTDAVVMDAISGKYYNAKKNTLSFSEESLSDEYFAVALRKDDKALLDEINRLLDEMKKDGTFDQISLKWLGTTK
>NZ_CP028105.1|WP_005977207.1|3214973_3215600_+|amino-acid-ABC-transporter-permease
MDGNVIFILKGMKLTVNLYVVTMLFSLPLGILLSLGRVSKNTTLSNMIQVYTWVFRGTPLLLQLFFVYYGLPVVGITLTPFAAASLTFVINYTAYFCEIFRGSILGIDPGQYEAAKVLGMKYWQTMIRIIIPQALITALPPLSNEAISLIKDTSLVSAIGMAEILRNSRELVTRDFSITPFFICAVVYLGLSTIVVIFFKRMEKKVMI
>NZ_CP028105.1|WP_172453957.1|3215604_3216255_+|ATP-binding-cassette-domain-containing-protein
MIKVNDLSKQYLEGDVILKGVNLDIEKGEVVSIIGPSGGGKSTLLRCLIGLEEIDSGNIEVPDKKKMGMVFQSFNLFPHKTAIQNIMESLIVVDKMDKSEAKKIAYDLLEKVGLKDRADFYPKALSGGQKQRVAIARALARNPEVLLFDEPTSALDPDMVKEVLNVIEQLRESSNITMVIVSHEIDFVNQISDRIVVMENGNIKNIIVNKKKRQVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP028105_7	7.7\|3066098\|37\|NZ_CP028105\|CRISPRCasFinder,CRT,PILER-CR	3066098-3066134	37	NZ_CP028105.1	649896-649932	0	1.0
NZ_CP028105_4	4.1\|2077185\|18\|NZ_CP028105\|CRISPRCasFinder	2077185-2077202	18	NZ_CP028105.1	343466-343483	2	0.889
NZ_CP028105_8	8.15\|3076711\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076711-3076746	36	NZ_CP028105.1	2677225-2677260	2	0.944

1. spacer 7.7|3066098|37|NZ_CP028105|CRISPRCasFinder,CRT,PILER-CR matches to position: 649896-649932, mismatch: 0, identity: 1.0

ttaggaatagatataatgctgaatcctgaagcagaag	CRISPR spacer
ttaggaatagatataatgctgaatcctgaagcagaag	Protospacer
*************************************

2. spacer 4.1|2077185|18|NZ_CP028105|CRISPRCasFinder matches to position: 343466-343483, mismatch: 2, identity: 0.889

taagaaaggttttctctt	CRISPR spacer
taagaatgtttttctctt	Protospacer
****** * *********

3. spacer 8.15|3076711|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to position: 2677225-2677260, mismatch: 2, identity: 0.944

accttttagattctctaatttgtcagaattttgttt	CRISPR spacer
accttttagattctctaatttgtcagaatttgattt	Protospacer
******************************* .***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028105_7	7.15\|3066618\|36\|NZ_CP028105\|CRISPRCasFinder,CRT,PILER-CR	3066618-3066653	36	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	34545-34580	1	0.972
NZ_CP028105_7	7.17\|3066748\|37\|NZ_CP028105\|CRISPRCasFinder,CRT,PILER-CR	3066748-3066784	37	NZ_AP017970	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence	2005-2041	1	0.973
NZ_CP028105_9	9.22\|3206558\|38\|NZ_CP028105\|CRT	3206558-3206595	38	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	22462-22499	1	0.974
NZ_CP028105_9	9.26\|3206558\|37\|NZ_CP028105\|PILER-CR	3206558-3206594	37	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	22463-22499	1	0.973
NZ_CP028105_9	9.4\|3205849\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205849-3205884	36	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	1221-1256	2	0.944
NZ_CP028105_9	9.11\|3205849\|38\|NZ_CP028105\|CRT	3205849-3205886	38	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	1219-1256	3	0.921
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223766	Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223767	Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223768	Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223770	Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223774	Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223775	Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223772	Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223771	Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223777	Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT352920	Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223781	Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NZ_KT223780	Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence	2518-2545	5	0.821
NZ_CP028105_7	7.1\|3065719\|28\|NZ_CP028105\|CRISPRCasFinder,CRT	3065719-3065746	28	NC_007900	Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence	2667-2694	5	0.821
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	163784-163819	5	0.861
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250021	Prevotella phage Lak-B2, complete genome	506152-506183	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250024	Prevotella phage Lak-B5, complete genome	500518-500549	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250028	Prevotella phage Lak-B9, complete genome	504949-504980	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250023	Prevotella phage Lak-B4, complete genome	505383-505414	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250025	Prevotella phage Lak-B6, complete genome	503612-503643	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250022	Prevotella phage Lak-B3, complete genome	503702-503733	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250027	Prevotella phage Lak-B8, complete genome	505915-505946	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250026	Prevotella phage Lak-B7, complete genome	504951-504982	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250020	Prevotella phage Lak-B1, complete genome	504932-504963	6	0.812
NZ_CP028105_1	1.6\|218803\|32\|NZ_CP028105\|CRT	218803-218834	32	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	104472-104503	6	0.812
NZ_CP028105_2	2.2\|432256\|32\|NZ_CP028105\|PILER-CR	432256-432287	32	KY296500	Xenohaliotis phage pCXc-HC2016, complete genome	21673-21704	6	0.812
NZ_CP028105_2	2.2\|432256\|32\|NZ_CP028105\|PILER-CR	432256-432287	32	KY296501	Xenohaliotis phage pCXc-HR2015, complete genome	21671-21702	6	0.812
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250025	Prevotella phage Lak-B6, complete genome	67003-67034	7	0.781
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	MK250022	Prevotella phage Lak-B3, complete genome	67018-67049	7	0.781
NZ_CP028105_1	1.8\|218805\|30\|NZ_CP028105\|PILER-CR	218805-218834	30	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	953-982	7	0.767
NZ_CP028105_3	3.1\|435996\|37\|NZ_CP028105\|CRISPRCasFinder	435996-436032	37	NC_010479	Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence	20470-20506	7	0.811
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	189534-189569	7	0.806
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	169988-170023	7	0.806
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	171954-171989	7	0.806
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	182670-182705	7	0.806
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	209212-209247	7	0.806
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	NC_048074	Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome	67075-67109	7	0.8
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	MT708547	Klebsiella phage Muenster, complete genome	122073-122107	7	0.8
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	MF919491	Propionibacterium phage Aquarius, complete genome	29069-29103	7	0.8
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	NC_022337	Propionibacterium phage PHL071N05, complete genome	28435-28469	7	0.8
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	NC_027630	Propionibacterium phage Ouroboros, complete genome	28461-28495	7	0.8
NZ_CP028105_9	9.7\|3206049\|36\|NZ_CP028105\|CRISPRCasFinder	3206049-3206084	36	MT774399	CrAssphage cr109_1, complete genome	69617-69652	7	0.806
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	623716-623747	8	0.75
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	115364-115395	8	0.75
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	641418-641449	8	0.75
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	641433-641464	8	0.75
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	693869-693900	8	0.75
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	116600-116631	8	0.75
NZ_CP028105_1	1.6\|218803\|32\|NZ_CP028105\|CRT	218803-218834	32	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	8831-8862	8	0.75
NZ_CP028105_1	1.8\|218805\|30\|NZ_CP028105\|PILER-CR	218805-218834	30	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	8830-8859	8	0.733
NZ_CP028105_2	2.2\|432256\|32\|NZ_CP028105\|PILER-CR	432256-432287	32	MK448931	Streptococcus phage Javan414, complete genome	253-284	8	0.75
NZ_CP028105_7	7.17\|3066748\|37\|NZ_CP028105\|CRISPRCasFinder,CRT,PILER-CR	3066748-3066784	37	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	149947-149983	8	0.784
NZ_CP028105_8	8.1\|3075807\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3075807-3075841	35	MN694474	Marine virus AFVG_250M581, complete genome	27704-27738	8	0.771
NZ_CP028105_9	9.3\|3205784\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205784-3205818	35	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	24114-24148	8	0.771
NZ_CP028105_9	9.3\|3205784\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205784-3205818	35	MT939240	Enterococcus phage 9181, complete genome	30365-30399	8	0.771
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP042515	Serratia marcescens strain E28 plasmid pE28_003	26262-26293	9	0.719
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	AY082070	Bacteriophage phi3626, complete genome	12961-12992	9	0.719
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NC_003524	Clostridium phage phi3626, complete genome	12961-12992	9	0.719
NZ_CP028105_1	1.6\|218803\|32\|NZ_CP028105\|CRT	218803-218834	32	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	950-981	9	0.719
NZ_CP028105_1	1.8\|218805\|30\|NZ_CP028105\|PILER-CR	218805-218834	30	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	270699-270728	9	0.7
NZ_CP028105_1	1.8\|218805\|30\|NZ_CP028105\|PILER-CR	218805-218834	30	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	638557-638586	9	0.7
NZ_CP028105_2	2.2\|432256\|32\|NZ_CP028105\|PILER-CR	432256-432287	32	MF448566	Lactococcus phage 63302, complete genome	31803-31834	9	0.719
NZ_CP028105_7	7.14\|3066554\|35\|NZ_CP028105\|CRISPRCasFinder,CRT,PILER-CR	3066554-3066588	35	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	73130-73164	9	0.743
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	CP012553	Campylobacter sp. RM16192 plasmid p16192, complete sequence	25198-25233	9	0.75
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	118877-118912	9	0.75
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	240727-240762	9	0.75
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	54650-54685	9	0.75
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	NZ_KX258624	Bacillus thuringiensis strain INTA Fr7-4 plasmid pFR260, complete sequence	145368-145402	9	0.743
NZ_CP028105_8	8.19\|3076971\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076971-3077005	35	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	155925-155959	9	0.743
NZ_CP028105_9	9.2\|3205718\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205718-3205753	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	486173-486208	9	0.75
NZ_CP028105_9	9.10\|3205784\|37\|NZ_CP028105\|CRT	3205784-3205820	37	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	24112-24148	9	0.757
NZ_CP028105_9	9.10\|3205784\|37\|NZ_CP028105\|CRT	3205784-3205820	37	MT939240	Enterococcus phage 9181, complete genome	30365-30401	9	0.757
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	623713-623747	10	0.714
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	115364-115398	10	0.714
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	641418-641452	10	0.714
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	641433-641467	10	0.714
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	693866-693900	10	0.714
NZ_CP028105_1	1.1\|218669\|35\|NZ_CP028105\|CRISPRCasFinder	218669-218703	35	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	116600-116634	10	0.714
NZ_CP028105_1	1.3\|218801\|34\|NZ_CP028105\|CRISPRCasFinder	218801-218834	34	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	950-983	10	0.706
NZ_CP028105_1	1.3\|218801\|34\|NZ_CP028105\|CRISPRCasFinder	218801-218834	34	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	104472-104505	10	0.706
NZ_CP028105_1	1.3\|218801\|34\|NZ_CP028105\|CRISPRCasFinder	218801-218834	34	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	8829-8862	10	0.706
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NZ_CP045225	Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence	3100-3131	10	0.688
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	150290-150321	10	0.688
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1357319-1357350	10	0.688
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	24875-24906	10	0.688
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	150290-150321	10	0.688
NZ_CP028105_1	1.4\|218672\|32\|NZ_CP028105\|CRT	218672-218703	32	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	150290-150321	10	0.688
NZ_CP028105_8	8.3\|3075936\|34\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3075936-3075969	34	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	49977-50010	10	0.706
NZ_CP028105_8	8.3\|3075936\|34\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3075936-3075969	34	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	60693-60726	10	0.706
NZ_CP028105_8	8.16\|3076776\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076776-3076811	36	L33769	Lactococcus phage bIL67, complete genome	15406-15441	10	0.722
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	46123-46158	10	0.722
NZ_CP028105_8	8.18\|3076906\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076906-3076941	36	NZ_CP038900	Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence	43735-43770	10	0.722
NZ_CP028105_9	9.3\|3205784\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205784-3205818	35	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	912392-912426	10	0.714
NZ_CP028105_8	8.14\|3076646\|36\|NZ_CP028105\|PILER-CR,CRISPRCasFinder,CRT	3076646-3076681	36	NC_019677	Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence	47592-47627	11	0.694
NZ_CP028105_9	9.3\|3205784\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205784-3205818	35	LC425525	Uncultured phage DNA, contig: NODE869	8726-8760	11	0.686
NZ_CP028105_9	9.3\|3205784\|35\|NZ_CP028105\|PILER-CR,CRISPRCasFinder	3205784-3205818	35	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	108443-108477	11	0.686
NZ_CP028105_9	9.9\|3205718\|38\|NZ_CP028105\|CRT	3205718-3205755	38	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	486173-486210	11	0.711
NZ_CP028105_9	9.10\|3205784\|37\|NZ_CP028105\|CRT	3205784-3205820	37	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	912390-912426	12	0.676

1. spacer 7.15|3066618|36|NZ_CP028105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 1, identity: 0.972

aagcagaagaggtggaaattaaaatatctgaaaaat	CRISPR spacer
aagcagaagaggtagaaattaaaatatctgaaaaat	Protospacer
*************.**********************

2. spacer 7.17|3066748|37|NZ_CP028105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017970 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence) position: , mismatch: 1, identity: 0.973

tagaaaataatcttacttcacattttaaaaatattat	CRISPR spacer
tagaaaataatcttgcttcacattttaaaaatattat	Protospacer
**************.**********************

3. spacer 9.22|3206558|38|NZ_CP028105|CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 1, identity: 0.974

accttagaagaatcaaaaattttcttagtctctttaaa	CRISPR spacer
accttagaagaatcaaaaattttcttagtatctttaaa	Protospacer
***************************** ********

4. spacer 9.26|3206558|37|NZ_CP028105|PILER-CR matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 1, identity: 0.973

accttagaagaatcaaaaattttcttagtctctttaa	CRISPR spacer
accttagaagaatcaaaaattttcttagtatctttaa	Protospacer
***************************** *******

5. spacer 9.4|3205849|36|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 2, identity: 0.944

ctcaaaggatagactccacgctttttttcaactgtt	CRISPR spacer
ctcaaaggatagactacacgcttcttttcaactgtt	Protospacer
*************** *******.************

6. spacer 9.11|3205849|38|NZ_CP028105|CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 3, identity: 0.921

ctcaaaggatagactccacgctttttttcaactgttat	CRISPR spacer
ctcaaaggatagactacacgcttcttttcaactgtttt	Protospacer
*************** *******.************ *

7. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223766 (Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

8. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223767 (Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

9. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223768 (Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

10. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223770 (Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

11. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223774 (Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

12. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223775 (Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

13. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223772 (Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

14. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223771 (Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

15. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223777 (Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

16. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT352920 (Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

17. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223781 (Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

18. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NZ_KT223780 (Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

19. spacer 7.1|3065719|28|NZ_CP028105|CRISPRCasFinder,CRT matches to NC_007900 (Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccctatactcttgtggatcaattta	Protospacer
*** * ****************** * .

20. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 5, identity: 0.861

atatt-aaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
-tattgaaaaaataaaatttttaaaaaaattaagaac	Protospacer
 **** ******* ****** *************.*

21. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

22. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

23. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

24. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

25. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

26. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

27. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

28. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

29. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

30. spacer 1.6|218803|32|NZ_CP028105|CRT matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 6, identity: 0.812

atctact--gcttttatcttttcagcaccactta	CRISPR spacer
--cgactcggcttttatctgttcatcaccacttg	Protospacer
  * ***  ********** **** ********.

31. spacer 2.2|432256|32|NZ_CP028105|PILER-CR matches to KY296500 (Xenohaliotis phage pCXc-HC2016, complete genome) position: , mismatch: 6, identity: 0.812

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atagaatatcaggaatgaaaagtaaaaatgat	Protospacer
* ** . **************  *********

32. spacer 2.2|432256|32|NZ_CP028105|PILER-CR matches to KY296501 (Xenohaliotis phage pCXc-HR2015, complete genome) position: , mismatch: 6, identity: 0.812

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atagaatatcaggaatgaaaagtaaaaatgat	Protospacer
* ** . **************  *********

33. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.781

aaaatttataaaataccattaaataaacctgt-	CRISPR spacer
aaaatatataaaataacattaaa-atattagta	Protospacer
***** ********* ******* * *.. **

34. spacer 1.4|218672|32|NZ_CP028105|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.781

aaaatttataaaataccattaaataaacctgt-	CRISPR spacer
aaaatatataaaataacattaaa-atattagta	Protospacer
***** ********* ******* * *.. **

35. spacer 1.8|218805|30|NZ_CP028105|PILER-CR matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

tatctactgcttttatcttttcagcaccac	CRISPR spacer
catctactgctttcatcttctcagcatatt	Protospacer
.************.*****.******.  .

36. spacer 3.1|435996|37|NZ_CP028105|CRISPRCasFinder matches to NC_010479 (Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence) position: , mismatch: 7, identity: 0.811

ggaagtagaaaaaatacaaaaaatgattgaatatagt-	CRISPR spacer
agaagtagaaaaaataaaaaaaataatt-attctattt	Protospacer
.*************** *******.*** * * ** *

37. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
gtattaagaaattaaatttataaaagaatcagtgaa	Protospacer
.******.*****************.***.*. **.

38. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

39. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

40. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

41. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.806

atatta-aaaaattaaatttataaaaaaattaaggag	CRISPR spacer
-tataataaaaactaaaattataaaaaaattaatcaa	Protospacer
 *** * *****.**** ***************  *.

42. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NC_048074 (Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome) position: , mismatch: 7, identity: 0.8

-taataatataaaataattatttaagagactaaaaa	CRISPR spacer
cttgtagc-taaaatatttatttaagatactaaaaa	Protospacer
 * .**.. ******* ********** ********

43. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
taaaatgcaaaaataactatttaagagactgaaaa	Protospacer
*** *    *******.*************.****

44. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to MF919491 (Propionibacterium phage Aquarius, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

45. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NC_022337 (Propionibacterium phage PHL071N05, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

46. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NC_027630 (Propionibacterium phage Ouroboros, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

47. spacer 9.7|3206049|36|NZ_CP028105|CRISPRCasFinder matches to MT774399 (CrAssphage cr109_1, complete genome) position: , mismatch: 7, identity: 0.806

--ttgttatcttaatacttccatcttcattataatgca	CRISPR spacer
aatcattg--ttgatacttccatcttcattataatgta	Protospacer
  *..**.  **.***********************.*

48. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

49. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

50. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

51. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

52. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

53. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

54. spacer 1.6|218803|32|NZ_CP028105|CRT matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 8, identity: 0.75

atctactgcttttatcttttcagcaccactta	CRISPR spacer
atcaagtgcttttatcttttcagccttgtttt	Protospacer
*** * ****************** ....**

55. spacer 1.8|218805|30|NZ_CP028105|PILER-CR matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 8, identity: 0.733

tatctactgcttttatcttttcagcaccac	CRISPR spacer
aatcaagtgcttttatcttttcagccttgt	Protospacer
 *** * ****************** ....

56. spacer 2.2|432256|32|NZ_CP028105|PILER-CR matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 8, identity: 0.75

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
ttgttgatacaggaatgaaaataaaaaatcac	Protospacer
  . ***  ******************** *.

57. spacer 7.17|3066748|37|NZ_CP028105|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.784

tagaaaataatcttacttcacattttaaaaatattat	CRISPR spacer
ttataaaaaatcttacttcaaattttaaaaacagcat	Protospacer
* . *** ************ **********.* .**

58. spacer 8.1|3075807|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to MN694474 (Marine virus AFVG_250M581, complete genome) position: , mismatch: 8, identity: 0.771

tcagaagcttttaaaaatctagaatttggaatata	CRISPR spacer
tatggacagtttaaaaatctaaaatttagaatata	Protospacer
*  *.*   ************.*****.*******

59. spacer 9.3|3205784|35|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.771

caagcaat--taaaaaacaaattaaatctttattagg	CRISPR spacer
--gttaatagaaaaaaactaactaaatctttattagg	Protospacer
  . .***   ******* **.***************

60. spacer 9.3|3205784|35|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 8, identity: 0.771

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
aaagcaattaaaaaagaaattaaaactaacttata	Protospacer
 ************** ******** **   *** .

61. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP042515 (Serratia marcescens strain E28 plasmid pE28_003) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
tttatttataaaatacaatgaaataaataggg	Protospacer
   ************* ** *******.  *

62. spacer 1.4|218672|32|NZ_CP028105|CRT matches to AY082070 (Bacteriophage phi3626, complete genome) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
taaatttagaaaataccaataaatataaaaac	Protospacer
 ******* ********* ****** *   ..

63. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NC_003524 (Clostridium phage phi3626, complete genome) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
taaatttagaaaataccaataaatataaaaac	Protospacer
 ******* ********* ****** *   ..

64. spacer 1.6|218803|32|NZ_CP028105|CRT matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctactgcttttatcttttcagcaccactta	CRISPR spacer
atctactgctttcatcttctcagcatattggg	Protospacer
************.*****.******.  .  .

65. spacer 1.8|218805|30|NZ_CP028105|PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 9, identity: 0.7

tatctactgcttttatcttttcagcaccac	CRISPR spacer
ccaggactgcctttatcttttcagcagcct	Protospacer
.    *****.*************** * .

66. spacer 1.8|218805|30|NZ_CP028105|PILER-CR matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.7

tatctactgcttttatcttttcagcaccac	CRISPR spacer
ccaggactgcctttatcttttcagcagcct	Protospacer
.    *****.*************** * .

67. spacer 2.2|432256|32|NZ_CP028105|PILER-CR matches to MF448566 (Lactococcus phage 63302, complete genome) position: , mismatch: 9, identity: 0.719

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atgatattgcaggaaagaaaataaaaaataat	Protospacer
* ..*.   ****** *************.**

68. spacer 7.14|3066554|35|NZ_CP028105|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 9, identity: 0.743

ccttacagttaaatttatatagtttattatttctg	CRISPR spacer
gttaacagttaaatttaaatagttaattatattgt	Protospacer
 .* ************* ****** ***** *.

69. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to CP012553 (Campylobacter sp. RM16192 plasmid p16192, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
aaattaaaaaatgaaatttacaaaaaaatcattcta	Protospacer
* ********** *******.********.*    .

70. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
atattaaaaaatgaattttataaaaaagaacactac	Protospacer
************ ** ***********.   *  *

71. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag-----	CRISPR spacer
ccattaaaaaattaaaatcataaaaaaa-----gagtgtgt	Protospacer
 .************** *.*********     ***

72. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaatt----aaatttataaaaaaattaaggag	CRISPR spacer
----taataggcttataaaatttataaaaaaattaaagag	Protospacer
    *** *...*    *******************.***

73. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX258624 (Bacillus thuringiensis strain INTA Fr7-4 plasmid pFR260, complete sequence) position: , mismatch: 9, identity: 0.743

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
aaataaaacaaaataattatttaagagaaaagggg	Protospacer
 ***** *.*******************  *....

74. spacer 8.19|3076971|35|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.743

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
aaataaaacaaaataattatttaagagaaaagggg	Protospacer
 ***** *.*******************  *....

75. spacer 9.2|3205718|36|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

taaaatacatggaaaatatttatgaattaaaaaata	CRISPR spacer
gatttcaaatagaaaatattaatgaattaaaaaatg	Protospacer
 *   .* **.********* **************.

76. spacer 9.10|3205784|37|NZ_CP028105|CRT matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.757

caagcaat--taaaaaacaaattaaatctttattaggat	CRISPR spacer
--gttaatagaaaaaaactaactaaatctttattaggtt	Protospacer
  . .***   ******* **.*************** *

77. spacer 9.10|3205784|37|NZ_CP028105|CRT matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 9, identity: 0.757

caagcaattaaaaaacaaattaaatctttattaggat	CRISPR spacer
aaagcaattaaaaaagaaattaaaactaacttataaa	Protospacer
 ************** ******** **   *** .*

78. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

79. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

80. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

81. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

82. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

83. spacer 1.1|218669|35|NZ_CP028105|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

84. spacer 1.3|218801|34|NZ_CP028105|CRISPRCasFinder matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
tcatctactgctttcatcttctcagcatattggg	Protospacer
*.************.*****.******.  .  .

85. spacer 1.3|218801|34|NZ_CP028105|CRISPRCasFinder matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
tccgactcggcttttatctgttcatcaccacttg	Protospacer
*.   . * ********** **** ********.

86. spacer 1.3|218801|34|NZ_CP028105|CRISPRCasFinder matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
gaatcaagtgcttttatcttttcagccttgtttt	Protospacer
  *** * ****************** ....**

87. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NZ_CP045225 (Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
gtcgaatacaaaataccattaaatagacctaa	Protospacer
.  .  **.****************.****.

88. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

89. spacer 1.4|218672|32|NZ_CP028105|CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt-----	CRISPR spacer
ggtatttataaaatacgataaaataa-----taaata	Protospacer
.. ************* ** ******     *

90. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttattttatgaaataccattcaataaattata	Protospacer
  * *****.********** ******..

91. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

92. spacer 1.4|218672|32|NZ_CP028105|CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

93. spacer 8.3|3075936|34|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.706

tggctacatatttactagaataatctataagcga	CRISPR spacer
atttaacatatatactagaataatctatatggtt	Protospacer
   . ****** ***************** *

94. spacer 8.3|3075936|34|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.706

tggctacatatttactagaataatctataagcga	CRISPR spacer
atttaacatatatactagaataatctatatggtt	Protospacer
   . ****** ***************** *

95. spacer 8.16|3076776|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to L33769 (Lactococcus phage bIL67, complete genome) position: , mismatch: 10, identity: 0.722

agaagagaagttatcaagacagcaaagaactttggc	CRISPR spacer
attaacaaagatatcaagaaagcaaagaactttaaa	Protospacer
*  *. .*** ******** *************..

96. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
tttaataacaattaaatttataaaaaaaataaaaat	Protospacer
 *    ** ******************* ***..*

97. spacer 8.18|3076906|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038900 (Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
tttaataacaattaaatttataaaaaaaataaaaat	Protospacer
 *    ** ******************* ***..*

98. spacer 9.3|3205784|35|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.714

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
ttaaagtttaaaaaataaattaagtctttattata	Protospacer
. *. . ********.*******.********* .

99. spacer 8.14|3076646|36|NZ_CP028105|PILER-CR,CRISPRCasFinder,CRT matches to NC_019677 (Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence) position: , mismatch: 11, identity: 0.694

ttttttgctttttctctctcttttccccagtaataa	CRISPR spacer
aaacaggttttttctctcactttcccccagtaatcc	Protospacer
   .  *.********** ****.**********

100. spacer 9.3|3205784|35|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 11, identity: 0.686

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
ggctttcctagaaaacaaattaaatctttaataga	Protospacer
 .  .  .**.******************* ***.

101. spacer 9.3|3205784|35|NZ_CP028105|PILER-CR,CRISPRCasFinder matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 11, identity: 0.686

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
agtaaaattaaaaaacaattaaaatctttactctt	Protospacer
 . . ************* * *********.*

102. spacer 9.9|3205718|38|NZ_CP028105|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.711

taaaatacatggaaaatatttatgaattaaaaaataat	CRISPR spacer
gatttcaaatagaaaatattaatgaattaaaaaatgtg	Protospacer
 *   .* **.********* **************.

103. spacer 9.10|3205784|37|NZ_CP028105|CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 12, identity: 0.676

caagcaattaaaaaacaaattaaatctttattaggat	CRISPR spacer
ttaaagtttaaaaaataaattaagtctttattatatc	Protospacer
. *. . ********.*******.********* . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3618 : 46835

Clostridium_phage(50.0%)

capsid,holin,protease,terminase,portal,plate,head,tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005982208.1\|3618_4890_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-93	53.8
WP_005982206.1\|4921_5515_-	DUF2344 domain-containing protein	NA	NA	NA	NA
WP_005982204.1\|5598_6609_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_005982202.1\|6629_7109_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_005982200.1\|7138_9220_-	outer membrane protein assembly factor	NA	NA	NA	NA
WP_005982198.1\|9235_13678_-	hypothetical protein	NA	NA	NA	NA
WP_005982197.1\|13695_14397_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_005982195.1\|14399_16286_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_005982193.1\|16313_16970_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_005982192.1\|16996_18334_-	potassium transporter KtrB	NA	NA	NA	NA
WP_005982190.1\|18517_19759_-	peptidase T	NA	NA	NA	NA
WP_005982188.1\|19836_21225_-	MATE family efflux transporter	NA	NA	NA	NA
WP_005982187.1\|21262_21697_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_005982184.1\|22005_22476_-\|holin	phage holin family protein	M9Q253	Clostridium_phage	1.3e-16	39.4
WP_005982182.1\|22489_22978_-	hypothetical protein	NA	NA	NA	NA
WP_005982180.1\|22990_23563_-	hypothetical protein	NA	NA	NA	NA
WP_005982178.1\|23606_24131_-	hypothetical protein	NA	NA	NA	NA
WP_005982177.1\|24203_24911_-	hypothetical protein	NA	NA	NA	NA
WP_005982174.1\|24923_25475_-	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	2.9e-28	41.9
WP_005982172.1\|25475_26534_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	5.4e-63	40.5
WP_005982170.1\|26530_26983_-	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_005982168.1\|26961_27516_-	DUF2577 family protein	NA	NA	NA	NA
WP_005982166.1\|27512_28490_-	hypothetical protein	NA	NA	NA	NA
WP_005982164.1\|28482_28923_-	hypothetical protein	NA	NA	NA	NA
WP_005982162.1\|28936_30808_-	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	3.7e-30	33.7
WP_005982160.1\|30916_31063_-	hypothetical protein	NA	NA	NA	NA
WP_005982158.1\|31214_31628_-\|portal	phage portal protein	NA	NA	NA	NA
WP_005982156.1\|31646_32081_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_005982154.1\|32093_33158_-\|terminase	terminase	A0A0A8WJL8	Clostridium_phage	4.6e-54	35.5
WP_005982152.1\|33150_33603_-	hypothetical protein	NA	NA	NA	NA
WP_005982150.1\|33602_34022_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_005982148.1\|34027_34363_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_005982146.1\|34363_34642_-\|head,tail	phage gp6-like head-tail connector protein	A0A0A7S0C9	Clostridium_phage	6.0e-14	46.2
WP_005982141.1\|34653_35766_-\|capsid	phage major capsid protein	Q2I8F7	Bacillus_phage	9.5e-42	31.7
WP_005982138.1\|35768_36509_-\|protease	Clp protease ClpP	J9QE31	Clostridium_phage	5.5e-38	38.9
WP_005982136.1\|36501_37722_-\|portal	phage portal protein	A6M949	Geobacillus_virus	1.0e-97	47.5
WP_005982134.1\|37744_39451_-\|terminase	terminase large subunit	A0A0A7RVS5	Clostridium_phage	3.6e-157	49.7
WP_005982132.1\|39454_39946_-\|terminase	phage terminase small subunit P27 family	A0A0S2GLF2	Bacillus_phage	1.6e-17	34.2
WP_005982129.1\|40036_40468_-	hypothetical protein	I2E8Y8	Clostridium_phage	4.5e-08	36.4
WP_005982128.1\|40703_41114_-	hypothetical protein	A0A2K5B275	Erysipelothrix_phage	1.4e-06	26.5
WP_005982126.1\|41116_41368_-	hypothetical protein	NA	NA	NA	NA
WP_005982124.1\|41364_41889_-	hypothetical protein	NA	NA	NA	NA
WP_005982122.1\|41889_42069_-	hypothetical protein	NA	NA	NA	NA
WP_040490925.1\|42195_43131_-	site-specific DNA-methyltransferase	G1D1F5	Mycobacterium_virus	6.5e-52	39.0
WP_005982117.1\|43134_43890_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_005982115.1\|43873_44080_-	hypothetical protein	NA	NA	NA	NA
WP_005982113.1\|44522_46835_-	toprim domain-containing protein	A0A1B1IP14	uncultured_Mediterranean_phage	6.8e-18	27.1

DBSCAN-SWA_2

395571 : 425523

Fusobacterium_phage(71.43%)

transposase,holin,terminase,plate,integrase,capsid

attL 407261:407280|attR 429146:429165

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040490909.1\|395571_396018_-\|holin	phage holin family protein	D7RWK5	Brochothrix_phage	1.8e-12	38.8
WP_005981462.1\|396063_396315_-	hypothetical protein	NA	NA	NA	NA
WP_005981460.1\|396317_396701_-	M15 family metallopeptidase	A0A076YI70	Citrobacter_phage	1.1e-18	41.8
WP_005981457.1\|396716_397319_-	hypothetical protein	NA	NA	NA	NA
WP_005981455.1\|397331_398027_-	hypothetical protein	A0A0E3Y6G8	Fusobacterium_phage	6.4e-12	31.1
WP_005981453.1\|398027_398558_-	hypothetical protein	A0A0E3Y5G1	Fusobacterium_phage	4.5e-34	43.0
WP_005981451.1\|398562_399717_-\|plate	baseplate J/gp47 family protein	A0A0E3Y634	Fusobacterium_phage	2.4e-104	51.5
WP_005981449.1\|399713_400064_-	hypothetical protein	A0A0E3U2P9	Fusobacterium_phage	1.2e-19	58.9
WP_005981447.1\|400073_400727_-	hypothetical protein	A0A0E3U262	Fusobacterium_phage	3.2e-29	46.0
WP_005981445.1\|400732_401545_-	hypothetical protein	A0A0E3Y4V7	Fusobacterium_phage	6.0e-54	41.0
WP_005981442.1\|401541_401874_-	hypothetical protein	A0A0E3Y6B2	Fusobacterium_phage	2.5e-22	46.3
WP_005981440.1\|401870_402446_-	hypothetical protein	A0A0E3U263	Fusobacterium_phage	7.3e-22	49.6
WP_005981438.1\|402438_404133_-	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	5.6e-86	41.0
WP_005981435.1\|404321_404774_-	hypothetical protein	A0A0E3Y638	Fusobacterium_phage	1.6e-19	35.3
WP_005981433.1\|404777_405221_-	DUF3277 family protein	NA	NA	NA	NA
WP_005981432.1\|405233_406232_-	hypothetical protein	A0A0E3U2Q2	Fusobacterium_phage	6.6e-95	54.7
WP_005981431.1\|406224_406725_-	hypothetical protein	NA	NA	NA	NA
WP_005981429.1\|406717_407050_-	hypothetical protein	NA	NA	NA	NA
WP_005981426.1\|407052_407505_-	hypothetical protein	A0A0E3Y6H6	Fusobacterium_phage	1.3e-26	41.4
407261:407280	attL	NA	NA	NA	NA
WP_005981425.1\|407504_407903_-	hypothetical protein	A0A0E3Y5G9	Fusobacterium_phage	9.3e-24	47.1
WP_005981423.1\|407904_408075_-	hypothetical protein	NA	NA	NA	NA
WP_005981421.1\|408076_409189_-	DUF5309 family protein	A0A2H4J2M3	uncultured_Caudovirales_phage	7.0e-37	31.3
WP_005981419.1\|409205_409796_-	phage scaffolding protein	NA	NA	NA	NA
WP_005981417.1\|409795_410584_-\|capsid	minor capsid protein	A0A0E3Y641	Fusobacterium_phage	5.7e-41	38.1
WP_005981415.1\|410583_412077_-	hypothetical protein	A0A0E3Y4W1	Fusobacterium_phage	1.9e-93	39.9
WP_040490877.1\|412188_413532_-\|terminase	PBSX family phage terminase large subunit	S6AVV7	Thermus_phage	9.8e-126	53.6
WP_005981411.1\|413464_413908_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005981409.1\|414113_414611_+	hypothetical protein	NA	NA	NA	NA
WP_005981407.1\|414628_414865_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005981405.1\|414979_415876_-	DNA adenine methylase	NA	NA	NA	NA
WP_167537218.1\|416143_416281_-	hypothetical protein	NA	NA	NA	NA
WP_005981403.1\|416422_417157_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_005981401.1\|417250_417844_-	hypothetical protein	NA	NA	NA	NA
WP_005981399.1\|417884_418679_-	prohibitin family protein	NA	NA	NA	NA
WP_167537217.1\|418696_418846_-	hypothetical protein	NA	NA	NA	NA
WP_005981395.1\|418889_419123_-	hypothetical protein	NA	NA	NA	NA
WP_005981393.1\|419139_419412_-	hypothetical protein	A0A0A7RWV6	Clostridium_phage	2.0e-22	55.6
WP_005981391.1\|419408_419786_-	hypothetical protein	NA	NA	NA	NA
WP_005981389.1\|419866_420268_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_005981387.1\|420270_420915_-	DUF3164 family protein	NA	NA	NA	NA
WP_005981384.1\|420977_421229_-	hypothetical protein	NA	NA	NA	NA
WP_005981383.1\|421239_422208_-	AAA family ATPase	NA	NA	NA	NA
WP_005981382.1\|422217_424107_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A0N7ACC7	Bacillus_phage	3.7e-38	27.3
WP_005981380.1\|424118_424529_-	hypothetical protein	NA	NA	NA	NA
WP_005981375.1\|424737_425523_-\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
429146:429165	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1848477 : 1860379

Staphylococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040490854.1\|1848477_1850331_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	3.0e-24	26.7
WP_040490792.1\|1850350_1850728_+	response regulator	A0A220YL79	Alteromonas_virus	1.0e-08	27.0
WP_008698289.1\|1850724_1851396_+	response regulator	A0A1V0SGR9	Hokovirus	3.5e-07	30.3
WP_005979065.1\|1851405_1852548_+	universal stress protein	NA	NA	NA	NA
WP_040490796.1\|1852611_1853445_-	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	4.9e-19	54.3
WP_005979069.1\|1853462_1854797_-	MATE family efflux transporter	NA	NA	NA	NA
WP_005979071.1\|1855174_1855636_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	55.7
WP_005979073.1\|1855653_1856715_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.5e-49	33.5
WP_040490855.1\|1856732_1857380_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.8e-32	38.7
WP_005979077.1\|1857397_1858591_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-115	53.9
WP_005979079.1\|1858704_1859646_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.3e-11	32.3
WP_005979081.1\|1859659_1860379_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	2.3e-28	43.0

DBSCAN-SWA_4

2611926 : 2668966

Clostridium_phage(26.67%)

head,protease,terminase,portal,integrase,tail,capsid,tRNA

attL 2651976:2651994|attR 2671957:2671975

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005976710.1\|2611926_2612655_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_005976712.1\|2612651_2613188_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_005976714.1\|2613228_2613792_+	RNA methyltransferase	NA	NA	NA	NA
WP_005976716.1\|2613813_2618154_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	1.8e-24	34.1
WP_005976718.1\|2618162_2619080_+	EamA family transporter	NA	NA	NA	NA
WP_005976720.1\|2619157_2619436_+	HU family DNA-binding protein	G4WAL8	Salmonella_phage	1.6e-11	40.7
WP_106878589.1\|2619688_2620891_+	threonine ammonia-lyase	A0A1W6JHY1	Lactococcus_phage	2.3e-09	29.3
WP_005976724.1\|2620969_2622244_+	hypothetical protein	NA	NA	NA	NA
WP_005976726.1\|2622233_2622980_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_005976728.1\|2623003_2624386_+	dipeptidase PepV	NA	NA	NA	NA
WP_005976730.1\|2624476_2625346_+	DUF2156 domain-containing protein	NA	NA	NA	NA
WP_005976732.1\|2625495_2626905_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA
WP_005976734.1\|2626976_2627216_-	hypothetical protein	NA	NA	NA	NA
WP_005976736.1\|2627381_2627981_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_005976738.1\|2628238_2628622_+	hypothetical protein	NA	NA	NA	NA
WP_005976740.1\|2628785_2629031_+	hypothetical protein	NA	NA	NA	NA
WP_005976742.1\|2629159_2629936_+	zinc transporter ZupT	NA	NA	NA	NA
WP_005976746.1\|2630210_2631083_+	AAA family ATPase	Q56VQ0	Pseudomonas_phage	4.2e-21	35.0
WP_005976749.1\|2631149_2631932_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_005976751.1\|2631957_2633244_-	TRAP transporter large permease	NA	NA	NA	NA
WP_005976753.1\|2633236_2633713_-	TRAP transporter small permease	NA	NA	NA	NA
WP_005976755.1\|2633727_2634729_-	C4-dicarboxylate TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_005976757.1\|2634801_2635845_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	7.8e-22	26.9
WP_005976759.1\|2636110_2637220_-	alanine racemase	NA	NA	NA	NA
WP_005976761.1\|2637235_2638561_-	D-serine ammonia-lyase	NA	NA	NA	NA
WP_005976763.1\|2638608_2639967_-	GntP family permease	NA	NA	NA	NA
WP_005976765.1\|2640385_2640943_+	cupin domain-containing protein	NA	NA	NA	NA
WP_005976767.1\|2641070_2641919_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_005976769.1\|2642127_2644089_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_170067064.1\|2644724_2645843_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_005976771.1\|2645877_2646267_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005976773.1\|2646426_2646639_+	hypothetical protein	NA	NA	NA	NA
WP_005976775.1\|2646669_2646834_+	hypothetical protein	NA	NA	NA	NA
WP_005976777.1\|2646946_2647360_+	hypothetical protein	NA	NA	NA	NA
WP_005976781.1\|2647594_2648062_+	hypothetical protein	NA	NA	NA	NA
WP_167537209.1\|2648054_2648222_+	hypothetical protein	NA	NA	NA	NA
WP_005976785.1\|2648429_2649362_+	phage replisome organizer N-terminal domain-containing protein	A0A1P8BKV2	Lactococcus_phage	9.1e-14	37.6
WP_005976787.1\|2649375_2650185_+	ATP-binding protein	A0A0S2SXI8	Bacillus_phage	5.0e-24	32.5
WP_005976789.1\|2650198_2650714_+	hypothetical protein	NA	NA	NA	NA
WP_005976791.1\|2650729_2651473_+	ParA family protein	A0A0E3Y677	Fusobacterium_phage	2.7e-48	46.9
WP_005976793.1\|2651469_2652480_+	hypothetical protein	NA	NA	NA	NA
2651976:2651994	attL	NA	NA	NA	NA
WP_005976795.1\|2652480_2652741_+	hypothetical protein	NA	NA	NA	NA
WP_005976798.1\|2652832_2653009_+	hypothetical protein	NA	NA	NA	NA
WP_005976799.1\|2653001_2653778_+	hypothetical protein	NA	NA	NA	NA
WP_005976800.1\|2653780_2653981_+	hypothetical protein	NA	NA	NA	NA
WP_005976801.1\|2653961_2655029_+\|integrase	site-specific integrase	A0A0A8WF08	Clostridium_phage	4.8e-91	51.0
WP_145959521.1\|2655300_2655618_+	hypothetical protein	NA	NA	NA	NA
WP_005976803.1\|2655625_2656168_+	hypothetical protein	NA	NA	NA	NA
WP_005976804.1\|2656226_2657906_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_167537210.1\|2658257_2658425_+	hypothetical protein	NA	NA	NA	NA
WP_005976806.1\|2658714_2659815_+	hypothetical protein	NA	NA	NA	NA
WP_005976807.1\|2659975_2660515_+	hypothetical protein	NA	NA	NA	NA
WP_005976808.1\|2660514_2660946_+	HNH endonuclease	NA	NA	NA	NA
WP_005976809.1\|2661059_2661515_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_005976810.1\|2661516_2663232_+\|terminase	terminase large subunit	A6M948	Geobacillus_virus	6.4e-130	44.1
WP_005976811.1\|2663228_2664503_+\|portal	phage portal protein	A6M949	Geobacillus_virus	6.5e-87	45.0
WP_005976812.1\|2664471_2665230_+\|protease	Clp protease ClpP	A0A0A7RTN2	Clostridium_phage	6.0e-48	47.0
WP_005976813.1\|2665230_2666382_+\|capsid	phage major capsid protein	Q9ZXF6	Bacillus_phage	1.7e-73	46.8
WP_005976814.1\|2666394_2666676_+\|head,tail	phage gp6-like head-tail connector protein	A6M953	Geobacillus_virus	2.8e-06	42.6
WP_005976815.1\|2666676_2667009_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_005976816.1\|2667012_2667420_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_005976817.1\|2667429_2667873_+	hypothetical protein	NA	NA	NA	NA
WP_005976818.1\|2667874_2668966_+	hypothetical protein	A0A090D804	Clostridium_phage	1.0e-24	27.6
2671957:2671975	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2915969 : 2921732

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005977780.1\|2915969_2916449_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.4e-26	46.7
WP_005977777.1\|2916512_2917229_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	4.0e-41	43.2
WP_005977775.1\|2917228_2918626_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.8e-61	34.6
WP_005977773.1\|2918648_2919650_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	1.4e-65	44.0
WP_005977769.1\|2919637_2920213_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.0e-24	37.8
WP_040490711.1\|2920226_2921732_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.6e-68	48.0

DBSCAN-SWA_6

3358405 : 3401732

Fusobacterium_phage(71.43%)

capsid,holin,protease,terminase,portal,plate,integrase,tail,tRNA

attL 3362177:3362197|attR 3377044:3377064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005979964.1\|3358405_3359485_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_005979966.1\|3359509_3360286_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_005979967.1\|3360494_3362174_+	hydroxylamine reductase	NA	NA	NA	NA
3362177:3362197	attL	NA	NA	NA	NA
WP_005979968.1\|3362358_3363765_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	4.7e-54	34.8
WP_005979969.1\|3363957_3365667_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	2.8e-69	31.2
WP_040490831.1\|3365741_3368318_-	ATP-dependent chaperone ClpB	A0A0A8J958	Klebsiella_phage	5.3e-120	36.6
WP_005979973.1\|3368701_3369199_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_005979975.1\|3369291_3370521_-	hypothetical protein	NA	NA	NA	NA
WP_005979978.1\|3370885_3371491_-	HAD family phosphatase	NA	NA	NA	NA
WP_005979980.1\|3371587_3372382_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005979982.1\|3372505_3374044_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_005979984.1\|3374169_3374619_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.2e-16	38.5
WP_005979986.1\|3374631_3374868_-	hypothetical protein	NA	NA	NA	NA
WP_005979988.1\|3374879_3375443_-	hypothetical protein	NA	NA	NA	NA
WP_106878625.1\|3375457_3375973_-	hypothetical protein	A0A0E3U2P7	Fusobacterium_phage	5.1e-06	36.3
WP_005979991.1\|3375985_3376960_-\|integrase	site-specific integrase	A0A0E3U2P3	Fusobacterium_phage	4.5e-56	39.8
WP_040490632.1\|3377480_3377711_-	hypothetical protein	NA	NA	NA	NA
3377044:3377064	attR	NA	NA	NA	NA
WP_106878603.1\|3377747_3378899_-	hypothetical protein	A0A0E3Y5F3	Fusobacterium_phage	7.0e-48	37.3
WP_005979998.1\|3378895_3379534_-\|tail	phage tail protein I	A0A0E3U255	Fusobacterium_phage	1.5e-44	44.8
WP_005980000.1\|3379526_3380624_-\|plate	baseplate J/gp47 family protein	A0A0E3U2P1	Fusobacterium_phage	1.7e-115	56.3
WP_005980002.1\|3380616_3380922_-	hypothetical protein	A0A0E3Y6F8	Fusobacterium_phage	6.9e-19	53.7
WP_005980004.1\|3380921_3381314_-\|tail	phage tail protein	A0A0E3Y6A2	Fusobacterium_phage	7.0e-32	54.6
WP_005980007.1\|3381322_3381820_-\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	2.7e-41	50.3
WP_005980009.1\|3381816_3382905_-	hypothetical protein	A0A0E3U253	Fusobacterium_phage	1.3e-88	44.3
WP_005980012.1\|3382906_3383116_-\|tail	tail protein X	A0A0C5AEF4	Bacteriophage	9.8e-09	38.1
WP_005980014.1\|3383102_3386165_-\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	7.5e-105	38.3
WP_005980016.1\|3386229_3386622_-	hypothetical protein	NA	NA	NA	NA
WP_005980018.1\|3386704_3387523_-	phage antirepressor KilAC domain-containing protein	A0A2H4JAT4	uncultured_Caudovirales_phage	3.0e-37	37.6
WP_005980021.1\|3387536_3387836_-	hypothetical protein	NA	NA	NA	NA
WP_005980023.1\|3387959_3388133_-	hypothetical protein	NA	NA	NA	NA
WP_005980025.1\|3388385_3388715_-	hypothetical protein	A0A0E3Y5E7	Fusobacterium_phage	2.6e-24	60.4
WP_005980027.1\|3388723_3389260_-\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	1.3e-49	57.0
WP_005980028.1\|3389276_3390692_-\|tail	phage tail protein	A0A0E3U251	Fusobacterium_phage	4.4e-177	62.2
WP_005980030.1\|3390691_3390964_-	hypothetical protein	NA	NA	NA	NA
WP_005980032.1\|3390973_3391435_-	hypothetical protein	A0A0E3Y698	Fusobacterium_phage	2.0e-30	43.1
WP_005980034.1\|3391431_3391998_-\|tail	phage tail protein	NA	NA	NA	NA
WP_005980036.1\|3391997_3392348_-	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	3.7e-16	45.1
WP_005980038.1\|3392322_3392553_-	hypothetical protein	NA	NA	NA	NA
WP_005980040.1\|3392604_3393630_-\|capsid	major capsid protein	A0A0E3U2N5	Fusobacterium_phage	3.9e-98	54.4
WP_005980043.1\|3393641_3393968_-	hypothetical protein	NA	NA	NA	NA
WP_005980045.1\|3393982_3395086_-\|protease	Clp protease ClpP	A0A0E3Y6E9	Fusobacterium_phage	1.0e-67	41.5
WP_005980047.1\|3395078_3396614_-\|portal	phage portal protein	A0A0E3Y693	Fusobacterium_phage	2.1e-180	64.6
WP_005980049.1\|3396617_3396836_-	hypothetical protein	A0A0C5AEE0	Bacteriophage	3.0e-08	45.6
WP_051006467.1\|3396835_3398602_-\|terminase	phage terminase large subunit family protein	A0A0E3U2N4	Fusobacterium_phage	1.7e-247	70.3
WP_005980053.1\|3398573_3399029_-	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	1.6e-32	50.3
WP_005980055.1\|3399140_3399653_-	hypothetical protein	NA	NA	NA	NA
WP_005980057.1\|3399811_3400834_-	hypothetical protein	NA	NA	NA	NA
WP_005980059.1\|3400823_3401144_-	hypothetical protein	NA	NA	NA	NA
WP_005980061.1\|3401189_3401732_-	N-acetylmuramoyl-L-alanine amidase	A0A0U4I901	Vibrio_phage	1.0e-20	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028105

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection