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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028106 Fusobacterium gonidiaformans ATCC 25563 chromosome, complete genome 2 crisprs DEDDh,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DinG,cas14j 0 14 6 0

Results visualization

1. NZ_CP028106
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028106_1 253113-253308 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028106_2 745942-751449 Unclear NA
83 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP028106_1 1.2|253225|57|NZ_CP028106|PILER-CR 253225-253281 57 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 245267-245323 7 0.877
NZ_CP028106_2 2.13|746761|35|NZ_CP028106|CRISPRCasFinder 746761-746795 35 MK047642 Phage NG55, complete genome 40303-40337 8 0.771
NZ_CP028106_2 2.31|747954|37|NZ_CP028106|CRISPRCasFinder 747954-747990 37 LR214966 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12 17778-17814 8 0.784
NZ_CP028106_2 2.72|750658|36|NZ_CP028106|CRISPRCasFinder,PILER-CR 750658-750693 36 MK448934 Streptococcus phage Javan422, complete genome 23818-23853 8 0.778
NZ_CP028106_2 2.81|751252|36|NZ_CP028106|CRISPRCasFinder,PILER-CR 751252-751287 36 NZ_CP011157 Bacillus cereus strain HN001 plasmid pRML02, complete sequence 47456-47491 8 0.778
NZ_CP028106_2 2.96|746760|36|NZ_CP028106|CRT 746760-746795 36 MK047642 Phage NG55, complete genome 40302-40337 8 0.778
NZ_CP028106_2 2.114|747953|38|NZ_CP028106|CRT,PILER-CR 747953-747990 38 LR214966 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12 17778-17815 8 0.789
NZ_CP028106_2 2.130|749012|36|NZ_CP028106|CRT,PILER-CR 749012-749047 36 NC_019765 Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence 269866-269901 8 0.778
NZ_CP028106_2 2.31|747954|37|NZ_CP028106|CRISPRCasFinder 747954-747990 37 LR214964 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10 12434-12470 9 0.757
NZ_CP028106_2 2.31|747954|37|NZ_CP028106|CRISPRCasFinder 747954-747990 37 NZ_CP033050 Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence 233040-233076 9 0.757
NZ_CP028106_2 2.114|747953|38|NZ_CP028106|CRT,PILER-CR 747953-747990 38 LR214964 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10 12434-12471 9 0.763
NZ_CP028106_2 2.155|750657|37|NZ_CP028106|CRT 750657-750693 37 MK448934 Streptococcus phage Javan422, complete genome 23817-23853 9 0.757
NZ_CP028106_2 2.164|751251|37|NZ_CP028106|CRT 751251-751287 37 NZ_CP011157 Bacillus cereus strain HN001 plasmid pRML02, complete sequence 47455-47491 9 0.757
NZ_CP028106_2 2.31|747954|37|NZ_CP028106|CRISPRCasFinder 747954-747990 37 LR214966 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12 12512-12548 10 0.73
NZ_CP028106_2 2.31|747954|37|NZ_CP028106|CRISPRCasFinder 747954-747990 37 NZ_CP026601 Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence 2567-2603 10 0.73
NZ_CP028106_2 2.64|750131|35|NZ_CP028106|CRISPRCasFinder,PILER-CR 750131-750165 35 NZ_CP017949 Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence 5535-5569 10 0.714
NZ_CP028106_2 2.71|750593|35|NZ_CP028106|CRISPRCasFinder,PILER-CR 750593-750627 35 CP033551 Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence 9749-9783 10 0.714
NZ_CP028106_2 2.71|750593|35|NZ_CP028106|CRISPRCasFinder,PILER-CR 750593-750627 35 CP033546 Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence 133868-133902 10 0.714
NZ_CP028106_2 2.72|750658|36|NZ_CP028106|CRISPRCasFinder,PILER-CR 750658-750693 36 MN812211 Flavobacterium phage vB_FspS_laban6-1, complete genome 26001-26036 10 0.722
NZ_CP028106_2 2.114|747953|38|NZ_CP028106|CRT,PILER-CR 747953-747990 38 LR214966 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12 12512-12549 10 0.737
NZ_CP028106_2 2.154|750592|36|NZ_CP028106|CRT 750592-750627 36 CP033551 Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence 9748-9783 10 0.722
NZ_CP028106_2 2.154|750592|36|NZ_CP028106|CRT 750592-750627 36 CP033546 Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence 133867-133902 10 0.722
NZ_CP028106_2 2.155|750657|37|NZ_CP028106|CRT 750657-750693 37 MN812211 Flavobacterium phage vB_FspS_laban6-1, complete genome 26001-26037 10 0.73
NZ_CP028106_2 2.157|750788|37|NZ_CP028106|CRT 750788-750824 37 NC_021709 Alteromonas mediterranea 615 plasmid unnamed, complete sequence 135447-135483 10 0.73

1. spacer 1.2|253225|57|NZ_CP028106|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.877

---cgatcaccatatttttggagcgggaaacgaggttcgaactcgcgacattcagcttgg	CRISPR spacer
ctacgctcaccaca---ttggagcgggaaaccaggttcgaactggcgacattcagcttgg	Protospacer
   ** ******.*   ************** *********** ****************

2. spacer 2.13|746761|35|NZ_CP028106|CRISPRCasFinder matches to MK047642 (Phage NG55, complete genome) position: , mismatch: 8, identity: 0.771

tcgtcatatttttctattagctttttctgatactt	CRISPR spacer
ttaccaaatttttctattatctttttctgagagtc	Protospacer
*...** ************ ********** * *.

3. spacer 2.31|747954|37|NZ_CP028106|CRISPRCasFinder matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.784

tttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
tttaaatctttgcaaaattctttcatatctttgtagt	Protospacer
***** ****** ************* ..*** *  *

4. spacer 2.72|750658|36|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to MK448934 (Streptococcus phage Javan422, complete genome) position: , mismatch: 8, identity: 0.778

agaaaaagatttagaaaactttgaagatgtggctag	CRISPR spacer
ggttgaagatttagaaatctttgaaaatgtggctta	Protospacer
.*  .************ *******.******** .

5. spacer 2.81|751252|36|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 8, identity: 0.778

gaagcaaaggaaagaggaaatcgaagcagattaaaa	CRISPR spacer
aaagcaaagtaaagaggaaatcaaagcaagtgtaga	Protospacer
.******** ************.*****..*  *.*

6. spacer 2.96|746760|36|NZ_CP028106|CRT matches to MK047642 (Phage NG55, complete genome) position: , mismatch: 8, identity: 0.778

atcgtcatatttttctattagctttttctgatactt	CRISPR spacer
attaccaaatttttctattatctttttctgagagtc	Protospacer
**...** ************ ********** * *.

7. spacer 2.114|747953|38|NZ_CP028106|CRT,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.789

ttttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
ttttaaatctttgcaaaattctttcatatctttgtagt	Protospacer
****** ****** ************* ..*** *  *

8. spacer 2.130|749012|36|NZ_CP028106|CRT,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 8, identity: 0.778

tggaggagctaaaaaaccagcttcat--cccattccca	CRISPR spacer
tgaaggagctaaaaaagcagcttcattactcagttt--	Protospacer
**.************* *********  *.** *..  

9. spacer 2.31|747954|37|NZ_CP028106|CRISPRCasFinder matches to LR214964 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10) position: , mismatch: 9, identity: 0.757

tttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
tttaaatctttgcaaaattctttcatatccttgtagt	Protospacer
***** ****** ************* ...** *  *

10. spacer 2.31|747954|37|NZ_CP028106|CRISPRCasFinder matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

--tttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
gttctaa--ctttgaagaagtctttcattctttttgtgg	Protospacer
  *.***  *******.** *************** .  

11. spacer 2.114|747953|38|NZ_CP028106|CRT,PILER-CR matches to LR214964 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10) position: , mismatch: 9, identity: 0.763

ttttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
ttttaaatctttgcaaaattctttcatatccttgtagt	Protospacer
****** ****** ************* ...** *  *

12. spacer 2.155|750657|37|NZ_CP028106|CRT matches to MK448934 (Streptococcus phage Javan422, complete genome) position: , mismatch: 9, identity: 0.757

tagaaaaagatttagaaaactttgaagatgtggctag	CRISPR spacer
aggttgaagatttagaaatctttgaaaatgtggctta	Protospacer
 .*  .************ *******.******** .

13. spacer 2.164|751251|37|NZ_CP028106|CRT matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 9, identity: 0.757

tgaagcaaaggaaagaggaaatcgaagcagattaaaa	CRISPR spacer
caaagcaaagtaaagaggaaatcaaagcaagtgtaga	Protospacer
..******** ************.*****..*  *.*

14. spacer 2.31|747954|37|NZ_CP028106|CRISPRCasFinder matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 10, identity: 0.73

tttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
tttaaatctttgcaaaattctttcatatcatttaaca	Protospacer
***** ****** ************* .. ***  . 

15. spacer 2.31|747954|37|NZ_CP028106|CRISPRCasFinder matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

tttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
tttaattctttcaataattctttcatatgtgtataag	Protospacer
*********** ** *********** . * * *   

16. spacer 2.64|750131|35|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to NZ_CP017949 (Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaagaatcgttaatatgctctattactgactc	CRISPR spacer
atatctgaatcgttaatatgctcttttaatgtgtg	Protospacer
 *    ****************** *** **  * 

17. spacer 2.71|750593|35|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to CP033551 (Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttttcttattgaaattatttgattttttatatca	CRISPR spacer
aaaatcttattgaaattatttggatttttaagata	Protospacer
    ******************. ****** . .*

18. spacer 2.71|750593|35|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to CP033546 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttttcttattgaaattatttgattttttatatca	CRISPR spacer
aaaatcttattgaaattatttggatttttaagata	Protospacer
    ******************. ****** . .*

19. spacer 2.72|750658|36|NZ_CP028106|CRISPRCasFinder,PILER-CR matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 10, identity: 0.722

agaaaaagatttagaaaactttgaagatgtggctag	CRISPR spacer
tccaaaagatttagaaaaatttaaagatgatgcgga	Protospacer
   *************** ***.******  ** ..

20. spacer 2.114|747953|38|NZ_CP028106|CRT,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 10, identity: 0.737

ttttaattctttgaaaaattctttcattcttttttctt	CRISPR spacer
ttttaaatctttgcaaaattctttcatatcatttaaca	Protospacer
****** ****** ************* .. ***  . 

21. spacer 2.154|750592|36|NZ_CP028106|CRT matches to CP033551 (Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence) position: , mismatch: 10, identity: 0.722

tcttttcttattgaaattatttgattttttatatca	CRISPR spacer
taaaatcttattgaaattatttggatttttaagata	Protospacer
*    ******************. ****** . .*

22. spacer 2.154|750592|36|NZ_CP028106|CRT matches to CP033546 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence) position: , mismatch: 10, identity: 0.722

tcttttcttattgaaattatttgattttttatatca	CRISPR spacer
taaaatcttattgaaattatttggatttttaagata	Protospacer
*    ******************. ****** . .*

23. spacer 2.155|750657|37|NZ_CP028106|CRT matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 10, identity: 0.73

tagaaaaagatttagaaaactttgaagatgtggctag	CRISPR spacer
ttccaaaagatttagaaaaatttaaagatgatgcgga	Protospacer
*   *************** ***.******  ** ..

24. spacer 2.157|750788|37|NZ_CP028106|CRT matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

tgtaaaaattgtagtagaaaaagaagtccctatcaca	CRISPR spacer
tgcaaaaattgtagaagaaaaagaagaataaattagc	Protospacer
**.*********** ***********  .  **.*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 336401 : 380625 50 Fusobacterium_phage(83.87%) tRNA,capsid,plate,portal,tail,terminase,protease,holin NA
DBSCAN-SWA_2 528184 : 534766 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_3 1187249 : 1199300 10 Prochlorococcus_phage(22.22%) NA NA
DBSCAN-SWA_4 1296210 : 1309559 9 Liberibacter_phage(25.0%) integrase attL 1300613:1300631|attR 1303295:1303313
DBSCAN-SWA_5 1411815 : 1418786 9 Bacillus_virus(33.33%) tRNA NA
DBSCAN-SWA_6 1530337 : 1535930 7 Enterobacteria_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage