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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028108 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome 8 crisprs cas14j,cas14k,DEDDh,csa3,cas4,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6,WYL,DinG,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,PD-DExK 4 8 3 2

Results visualization

1. NZ_CP028108
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_1 325695-328503 Unclear NA
42 spacers
cas4,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_2 1089744-1090784 TypeIII NA
13 spacers
cas2,cas1,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_3 1091156-1092198 TypeIII NA
13 spacers
cas2,cas1,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_4 1092612-1094771 TypeIII NA
28 spacers
cas2,cas1,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_5 1137040-1137210 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_6 1802635-1802805 TypeV NA
2 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_7 1982881-1983047 TypeV NA
2 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028108_8 2243648-2243779 TypeV NA
1 spacers
cas14j

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP028108_1 1.42|328437|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 328437-328473 37 NZ_CP028108.1 2087638-2087674 0 1.0
NZ_CP028108_1 1.37|328107|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 328107-328142 36 NZ_CP028108.1 2078340-2078375 1 0.972
NZ_CP028108_1 1.40|328304|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 328304-328340 37 NZ_CP028108.1 2080334-2080370 1 0.973
NZ_CP028108_1 1.38|328173|34|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 328173-328206 34 NZ_CP028108.1 2079702-2079735 2 0.941

1. spacer 1.42|328437|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to position: 2087638-2087674, mismatch: 0, identity: 1.0

tcctccttaatttaatcctaagtattttctaactgct	CRISPR spacer
tcctccttaatttaatcctaagtattttctaactgct	Protospacer
*************************************

2. spacer 1.37|328107|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to position: 2078340-2078375, mismatch: 1, identity: 0.972

ctcaactttttgattaatcaaattttctagctctgc	CRISPR spacer
ctcaactttttgattaatcaaatgttctagctctgc	Protospacer
*********************** ************

3. spacer 1.40|328304|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to position: 2080334-2080370, mismatch: 1, identity: 0.973

tagtcattagtaagcctatgagcttatttttaataac	CRISPR spacer
tagccattagtaagcctatgagcttatttttaataac	Protospacer
***.*********************************

4. spacer 1.38|328173|34|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to position: 2079702-2079735, mismatch: 2, identity: 0.941

ttgaaattgtgatgttttctactttagaaaagta	CRISPR spacer
ttgaaatagtgatattttctactttagaaaagta	Protospacer
******* *****.********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP028108_1 1.34|327907|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 327907-327943 37 NC_013164 Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence 87257-87293 4 0.892
NZ_CP028108_1 1.10|326320|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 326320-326354 35 KY389064 Staphylococcus phage phi879, complete genome 38797-38831 8 0.771
NZ_CP028108_1 1.11|326385|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 326385-326420 36 NC_010371 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence 3189-3224 8 0.778
NZ_CP028108_1 1.29|327576|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 327576-327611 36 MN693910 Marine virus AFVG_250M312, complete genome 20855-20890 9 0.75
NZ_CP028108_1 1.20|326979|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 326979-327013 35 MF001361 Enterococcus phage EF5, partial genome 44485-44519 10 0.714
NZ_CP028108_1 1.20|326979|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 326979-327013 35 MF001358 Enterococcus phage EF1, partial genome 72827-72861 10 0.714
NZ_CP028108_1 1.23|327178|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 327178-327212 35 KF114878 Leptospira phage LkmZ_Bejolso9, complete genome 17217-17251 10 0.714
NZ_CP028108_1 1.23|327178|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 327178-327212 35 KT995479 Bacillus phage BM5, complete genome 38401-38435 10 0.714
NZ_CP028108_1 1.27|327443|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR 327443-327478 36 NZ_CP053843 Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence 7869-7904 10 0.722
NZ_CP028108_2 2.13|1090711|37|NZ_CP028108|CRISPRCasFinder,CRT 1090711-1090747 37 NZ_CP018177 Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence 2637-2673 10 0.73
NZ_CP028108_2 2.13|1090711|37|NZ_CP028108|CRISPRCasFinder,CRT 1090711-1090747 37 NZ_CP018181 Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence 5148-5184 10 0.73

1. spacer 1.34|327907|37|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to NC_013164 (Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence) position: , mismatch: 4, identity: 0.892

ttagctcatgtagttggagctggaaaaacttttgaaa	CRISPR spacer
cttgcccatgtagttggagcaggaaaaacttttgaaa	Protospacer
.* **.************** ****************

2. spacer 1.10|326320|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to KY389064 (Staphylococcus phage phi879, complete genome) position: , mismatch: 8, identity: 0.771

ttatctaatttttcatagttagttatatttattcc---	CRISPR spacer
ttatcaaatttttcaaagttagtta---ttacatcata	Protospacer
***** ********* *********   ***. .*   

3. spacer 1.11|326385|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 8, identity: 0.778

cctttccttttcttgatcttttatatagatacaacc	CRISPR spacer
tcgatccttttcttgattttttatatatataattcc	Protospacer
.*  *************.********* ***   **

4. spacer 1.29|327576|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to MN693910 (Marine virus AFVG_250M312, complete genome) position: , mismatch: 9, identity: 0.75

tggaaatatgatggaaaaagctagtgcttatcaaga	CRISPR spacer
ttaaaatattattgaaaaagctagtgctttacctgc	Protospacer
* .****** ** ****************  *  * 

5. spacer 1.20|326979|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to MF001361 (Enterococcus phage EF5, partial genome) position: , mismatch: 10, identity: 0.714

taattggttatagaaatgatccaaaacaatcaata	CRISPR spacer
tgtatgcttataaaaatgatccaaaacaaagtact	Protospacer
*.  ** *****.****************   *. 

6. spacer 1.20|326979|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to MF001358 (Enterococcus phage EF1, partial genome) position: , mismatch: 10, identity: 0.714

taattggttatagaaatgatccaaaacaatcaata	CRISPR spacer
tgtatgcttataaaaatgatccaaaacaaagtact	Protospacer
*.  ** *****.****************   *. 

7. spacer 1.23|327178|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to KF114878 (Leptospira phage LkmZ_Bejolso9, complete genome) position: , mismatch: 10, identity: 0.714

gttttttaatttagttaatgtttcaacacagccag	CRISPR spacer
tttttttaaattagttactgtttcaatttcttcaa	Protospacer
 ******** ******* ********. .  .**.

8. spacer 1.23|327178|35|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to KT995479 (Bacillus phage BM5, complete genome) position: , mismatch: 10, identity: 0.714

gttttttaatttagttaatgtttcaacacagccag	CRISPR spacer
ggcttttaatttacttgatgtttcaacatactgtc	Protospacer
* .********** **.***********.* .   

9. spacer 1.27|327443|36|NZ_CP028108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053843 (Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence) position: , mismatch: 10, identity: 0.722

tttagactcttcatgacttaaaatttt----tgttccagc	CRISPR spacer
tttagtctcttcatcacttaaaatttcattaaattt----	Protospacer
***** ******** ***********.     .**.    

10. spacer 2.13|1090711|37|NZ_CP028108|CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 10, identity: 0.73

tagaaaaaatatttggagtaaactataaagaatatca	CRISPR spacer
gggccaaaaaatttgcagtaaactataaagatgagaa	Protospacer
 .*  **** ***** ***************  *  *

11. spacer 2.13|1090711|37|NZ_CP028108|CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 10, identity: 0.73

tagaaaaaatatttggagtaaactataaagaatatca	CRISPR spacer
gggccaaaaaatttgcagtaaactataaagatgagaa	Protospacer
 .*  **** ***** ***************  *  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 763650 : 769468 6 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 2057593 : 2120398 90 Fusobacterium_phage(35.48%) protease,transposase,plate,terminase,holin,integrase,capsid,tail,portal attL 2052524:2052539|attR 2126758:2126775
DBSCAN-SWA_3 2411733 : 2420148 6 Planktothrix_phage(16.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP028108.1|WP_008793878.1|2116808_2117069_-|hypothetical-protein 2116808_2117069_- 86 aa aa NA NA NA 2057593-2120398 yes
NZ_CP028108.1|WP_008793879.1|2117082_2117379_-|hypothetical-protein 2117082_2117379_- 98 aa aa NA NA NA 2057593-2120398 yes