CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028148	Streptococcus pyogenes strain TJ11-001 chromosome, complete genome	3 crisprs	DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,cas3,DEDDh,csa3	4	11	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028148_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028148_1

1044887-1044988

Orphan

Consensus_repeat	Method
AATAATTGGTATAGTCTAATTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028148_1

>merge|NZ_CP028148|1|1044887-1044988|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATACCGATAAAAACATTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACATAAAATTGGTATAGTCTAATTATA

>NZ_CP028148|1|1|1044887-1044988|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATA	CCGATAAAAACATTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACA
TAAAATTGGTATAGTCTAATTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028148.1\|WP_002989639.1\|1039122_1039896_-\|CAMP-factor-pore-forming-toxin-Cfa	unknown	unknown	gnl\|CDD\|369335
NZ_CP028148.1\|WP_002989607.1\|1053736_1054351_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP028148.1\|WP_002989632.1\|1041117_1041747_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP028148.1\|WP_002989626.1\|1042504_1042840_-\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_CP028148.1\|WP_002984469.1\|1032616_1032865_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP028148.1\|WP_002989601.1\|1055968_1058233_-\|glycogen/starch/alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP028148.1\|WP_002989610.1\|1052818_1053604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028148.1\|WP_002989645.1\|1036075_1037398_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_CP028148.1\|WP_002984449.1\|1045011_1045569_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP028148.1\|WP_002989630.1\|1041756_1042398_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP028148.1\|WP_002989617.1\|1051739_1052111_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP028148.1\|WP_019418807.1\|1048444_1051555_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917
NZ_CP028148.1\|WP_002989634.1\|1040265_1041102_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP028148.1\|WP_002984447.1\|1045786_1047289_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP028148.1\|WP_002989605.1\|1055091_1055712_+\|DUF3862-domain-containing-protein	unknown	unknown	gnl\|CDD\|289729
NZ_CP028148.1\|WP_002989642.1\|1037517_1038753_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP028148.1\|WP_002989624.1\|1043021_1044836_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP028148.1\|WP_002989613.1\|1052110_1052809_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP028148.1\|WP_002989648.1\|1033228_1035547_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP028148.1\|WP_002984444.1\|1047351_1048365_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111

Protein	Function_ID	Function_description	E-value
NZ_CP028148.1\|WP_002989639.1\|1039122_1039896_-\|CAMP-factor-pore-forming-toxin-Cfa	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.28878e-97
NZ_CP028148.1\|WP_002989607.1\|1053736_1054351_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
NZ_CP028148.1\|WP_002989632.1\|1041117_1041747_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.62206e-110
NZ_CP028148.1\|WP_002989626.1\|1042504_1042840_-\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.02984e-64
NZ_CP028148.1\|WP_002984469.1\|1032616_1032865_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
NZ_CP028148.1\|WP_002989601.1\|1055968_1058233_-\|glycogen/starch/alpha-glucan-family-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP028148.1\|WP_002989645.1\|1036075_1037398_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_CP028148.1\|WP_002984449.1\|1045011_1045569_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38
NZ_CP028148.1\|WP_002989630.1\|1041756_1042398_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	7.10383e-72
NZ_CP028148.1\|WP_002989617.1\|1051739_1052111_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.0536e-49
NZ_CP028148.1\|WP_019418807.1\|1048444_1051555_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0
NZ_CP028148.1\|WP_002989634.1\|1040265_1041102_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.04078e-109
NZ_CP028148.1\|WP_002984447.1\|1045786_1047289_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP028148.1\|WP_002989605.1\|1055091_1055712_+\|DUF3862-domain-containing-protein	gnl\|CDD\|289729	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862). Structure 3D4E shared structural similarity to beta-lactamase inhibitory proteins (BLIP) which already include 1XXM, 1S0W, 1JTG, 2G2U, 2G2W, 2B5R, and 3due. All of structures are involved in beta-lactamase inhibitor complex. (REF http://www.topsan.org/Proteins/JCSG/3d4e).	6.81674e-87
NZ_CP028148.1\|WP_002989642.1\|1037517_1038753_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	3.15139e-96
NZ_CP028148.1\|WP_002989624.1\|1043021_1044836_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP028148.1\|WP_002989613.1\|1052110_1052809_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.0668e-63
NZ_CP028148.1\|WP_002989648.1\|1033228_1035547_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP028148.1\|WP_002984444.1\|1047351_1048365_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0

>NZ_CP028148.1|WP_002989624.1|1043021_1044836_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANAHQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVIVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKPMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSREATYTMLIHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLATTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVSSHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHSFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>NZ_CP028148.1|WP_002989626.1|1042504_1042840_-|alkylphosphonate-utilization-protein
MSLPNCLQCQSEYVYEDGLLLICPMCAFEWTPGEEATEEEGLVVLDSNGVRLSDGDTITVVKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>NZ_CP028148.1|WP_002989630.1|1041756_1042398_-|amino-acid-ABC-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGTILAFLMKIPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>NZ_CP028148.1|WP_002989632.1|1041117_1041747_-|amino-acid-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKADAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIAPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>NZ_CP028148.1|WP_002989634.1|1040265_1041102_-|amino-acid-ABC-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKSLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKERQDKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRAFRVLYQNGKFQAISEKWFGDDVATANIKS
>NZ_CP028148.1|WP_002989639.1|1039122_1039896_-|CAMP-factor-pore-forming-toxin-Cfa
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKAQVQEIKALEEKVINYPDLQPTDRATIYTKAKLNKAIWNTRLERDKKVLGIKPFDVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQDALETALKS
>NZ_CP028148.1|WP_002989642.1|1037517_1038753_+|cation-diffusion-facilitator-family-transporter
MTQDPIANLKLARKGPIVSIIVYLLLSVAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVSVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQRTSIWRCHESWSLLFHQITPIAKKQLHHTHYRIVKM
>NZ_CP028148.1|WP_002989645.1|1036075_1037398_+|sodium:alanine-symporter-family-protein
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFLGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAILFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>NZ_CP028148.1|WP_002989648.1|1033228_1035547_-|DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>NZ_CP028148.1|WP_002984469.1|1032616_1032865_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN
>NZ_CP028148.1|WP_002984449.1|1045011_1045569_-|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>NZ_CP028148.1|WP_002984447.1|1045786_1047289_-|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>NZ_CP028148.1|WP_002984444.1|1047351_1048365_-|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>NZ_CP028148.1|WP_019418807.1|1048444_1051555_-|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQDLTEAGLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLVTVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIASILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>NZ_CP028148.1|WP_002989617.1|1051739_1052111_+|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>NZ_CP028148.1|WP_002989613.1|1052110_1052809_+|ABC-transporter-ATP-binding-protein
MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGEIVIDGYRPCVETKKIISYLPDTTYLNENMRIKDILEFFSDFYSDFDKSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRETYKV
>NZ_CP028148.1|WP_002989610.1|1052818_1053604_+|hypothetical-protein
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTIILAFAIAIVIVPMFNINELLEGFFNSFKVDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHSHIFNINTSAGSFPFTEQKTIYLLILEQFIEMIMFYLATNFIIKNKLNLQ
>NZ_CP028148.1|WP_002989607.1|1053736_1054351_-|TVP38/TMEM64-family-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>NZ_CP028148.1|WP_002989605.1|1055091_1055712_+|DUF3862-domain-containing-protein
MTKKHLLTLLLISFFTSFLVACSTTKDKEPQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSLEELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGLSQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFENNQLTEMSQVGLEE
>NZ_CP028148.1|WP_002989601.1|1055968_1058233_-|glycogen/starch/alpha-glucan-family-phosphorylase
MTRFTEYVETKLGKSLTQASNEEIYLSLLNFVKEEASHKAKNSAKRKVYYISAEFLIGKLLSNNLINLGIYKDIKEELAAAGKSIAEVEDVELEPSLGNGGLGRLASCFIDSISSLGINGEGVGLNYHCGLFKQVFKHNEQEAEPNYWIEDDSWLVPTDISYDVPFKNFTLKSRLDRIDVLGYKRDTKNYLNLFDIEGVDYGLIKDGISFDKTQIAKNLTLFLYPDDSDKNGELLRIYQQYFMVSNAVQLIIDEAIERGSNLHDLADYAYVQINDTHPSMVIPELIRLLTEKHGFDFDEAVAVVKNMVGYTNHTILAEALEKWPTAYLNEVVPHLVTIIEKLDALVRSEVSDPAVQIIDESGRVHMAHMDIHFATSVNGVAALHTEILKNSELKAFYDLYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLMAFADDKAVHVKLAEIKFNNKLALKRYLKDNKDIELDEHSIIDTQIKRFHEYKRQQMNALYVIHKYLEIKKGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSPYLNVHLVENYNVTVAEHLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELAGMENIYTFGKDSDTIINLYATASYVAKDYYDNHPAIKAAVNFIISPELLAFGNEERLDRLYKELISKDWFMTLIDLEEYIEVKEKMLADYEDQDLWMTKVVHNIAKAGFFSSDRTIEQYNEDIWHSR

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Crispr_ID: NZ_CP028148_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028148_2

1337478-1337775

TypeI

I-C

Consensus_repeat	Method
TATTTCAATCCACTCACCCATGAAGGGTGAGAC	CRT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	PILER-CR
TTTCAATCCACTCACCCATGAAGGGTGAGAC	CRISPRCasFinder

4 spacers

cas2,cas1,cas4,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP028148_2

>merge|NZ_CP028148|2|1337478-1337775|CRT,PILER-CR,CRISPRCasFinder
TCTTTCAATCCACTCACCCATGAAGGGTGAGACAACTAATTCCGCAAAGGCATTGTTCATATAATGATTTCAATCCACTCACCCATGAAGGGTGAGACTTGCAAAATTTACGTGATAACTTTAATAAAATAATATTTCAATCCACTCACCCATGAAGGGTGAGACGCTTTATCGATTTTTTAGAATATCTAGCCGAATCTATTTCAATCCACTCACCCATGAAGGGTGAGACGAACTCTATGTTTCCTTTTATCTGCAAAATCGATATTTCAATCCACTCACCCATGAAGGGTGAGAC

>NZ_CP028148|2|1|1337478-1337775|CRT
TCTTTCAATCCACTCACCCATGAAGGGTGAGAC	AACTAATTCCGCAAAGGCATTGTTCATATAAT
GATTTCAATCCACTCACCCATGAAGGGTGAGAC	TTGCAAAATTTACGTGATAACTTTAATAAAATAA
TATTTCAATCCACTCACCCATGAAGGGTGAGAC	GCTTTATCGATTTTTTAGAATATCTAGCCGAATC
TATTTCAATCCACTCACCCATGAAGGGTGAGAC	GAACTCTATGTTTCCTTTTATCTGCAAAATCGA
TATTTCAATCCACTCACCCATGAAGGGTGAGAC

>NZ_CP028148|2|1|1337480-1337775|PILER-CR
TTTCAATCCACTCACCCATGAAGGGTGAGACA	ACTAATTCCGCAAAGGCATTGTTCATATAATGA
TTTCAATCCACTCACCCATGAAGGGTGAGACT	TGCAAAATTTACGTGATAACTTTAATAAAATAATA
TTTCAATCCACTCACCCATGAAGGGTGAGACG	CTTTATCGATTTTTTAGAATATCTAGCCGAATCTA
TTTCAATCCACTCACCCATGAAGGGTGAGACG	AACTCTATGTTTCCTTTTATCTGCAAAATCGATA
TTTCAATCCACTCACCCATGAAGGGTGAGAC

>NZ_CP028148|2|2|1337480-1337775|CRISPRCasFinder
TTTCAATCCACTCACCCATGAAGGGTGAGAC	AACTAATTCCGCAAAGGCATTGTTCATATAATGA
TTTCAATCCACTCACCCATGAAGGGTGAGAC	TTGCAAAATTTACGTGATAACTTTAATAAAATAATA
TTTCAATCCACTCACCCATGAAGGGTGAGAC	GCTTTATCGATTTTTTAGAATATCTAGCCGAATCTA
TTTCAATCCACTCACCCATGAAGGGTGAGAC	GAACTCTATGTTTCCTTTTATCTGCAAAATCGATA
TTTCAATCCACTCACCCATGAAGGGTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028148.1\|WP_002983781.1\|1333995_1334736_-\|response-regulator	unknown	unknown	gnl\|CDD\|227095
NZ_CP028148.1\|WP_002989028.1\|1343531_1345940_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028148.1\|WP_002989054.1\|1330374_1331091_-\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
NZ_CP028148.1\|WP_072135462.1\|1349303_1349504_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP028148.1\|WP_002989048.1\|1334823_1335930_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_CP028148.1\|WP_002989056.1\|1329735_1330209_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NZ_CP028148.1\|WP_003060901.1\|1339249_1339924_-\|CRISPR-associated-protein-Cas4	cas4	COG1468_cas4_CAS-I-A:CAS-I-B:CAS-I-C:CAS-I-D:CAS-II-B	gnl\|CDD\|224385
NZ_CP028148.1\|WP_002989044.1\|1337923_1338217_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
NZ_CP028148.1\|WP_002989022.1\|1348743_1349307_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082
NZ_CP028148.1\|WP_011527692.1\|1336608_1337319_-\|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2	unknown	unknown	gnl\|CDD\|223856
NZ_CP028148.1\|WP_002989031.1\|1342670_1343399_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP028148.1\|WP_002989050.1\|1332265_1333999_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP028148.1\|WP_002989041.1\|1338227_1339253_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP028148.1\|WP_002989024.1\|1346093_1348742_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP028148.1\|WP_002989018.1\|1349907_1350303_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181104
NZ_CP028148.1\|WP_002983778.1\|1335972_1336596_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP028148.1\|WP_002989058.1\|1328913_1329594_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP028148.1\|WP_002989052.1\|1331113_1332193_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP028148.1\|WP_002989033.1\|1340775_1342671_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|273839
NZ_CP028148.1\|WP_002983803.1\|1327404_1328640_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949

Protein	Function_ID	Function_description	E-value
NZ_CP028148.1\|WP_002983781.1\|1333995_1334736_-\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.85886e-83
NZ_CP028148.1\|WP_002989028.1\|1343531_1345940_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.76387e-159
NZ_CP028148.1\|WP_002989054.1\|1330374_1331091_-\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.87925e-104
NZ_CP028148.1\|WP_072135462.1\|1349303_1349504_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.77275e-13
NZ_CP028148.1\|WP_002989048.1\|1334823_1335930_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	7.06236e-162
NZ_CP028148.1\|WP_002989056.1\|1329735_1330209_+\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	2.68589e-66
NZ_CP028148.1\|WP_003060901.1\|1339249_1339924_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.18604e-43
NZ_CP028148.1\|WP_002989044.1\|1337923_1338217_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	1.60225e-34
NZ_CP028148.1\|WP_002989022.1\|1348743_1349307_-\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.00400512
NZ_CP028148.1\|WP_011527692.1\|1336608_1337319_-\|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.03755e-42
NZ_CP028148.1\|WP_002989031.1\|1342670_1343399_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.00738e-116
NZ_CP028148.1\|WP_002989050.1\|1332265_1333999_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.55535e-65
NZ_CP028148.1\|WP_002989041.1\|1338227_1339253_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP028148.1\|WP_002989024.1\|1346093_1348742_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP028148.1\|WP_002989018.1\|1349907_1350303_-\|hypothetical-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	0.000151325
NZ_CP028148.1\|WP_002983778.1\|1335972_1336596_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.89498e-35
NZ_CP028148.1\|WP_002989058.1\|1328913_1329594_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	7.63873e-40
NZ_CP028148.1\|WP_002989052.1\|1331113_1332193_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	3.78855e-34
NZ_CP028148.1\|WP_002989033.1\|1340775_1342671_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	0
NZ_CP028148.1\|WP_002983803.1\|1327404_1328640_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0

>NZ_CP028148.1|WP_011527692.1|1336608_1337319_-|thiol-disulfide-oxidoreductase-associated-membrane-protein-CcdA2
MILSLVLMVSVFGAGLLSFFSPCIFPVLPVYLGILLDADDSKTITIFGKKLYWYGIVKTLAFIFGLSTIFVILGYGAGFLGNILYAVWFRYLLGALVIILGIHQMGLITIKSLQFQKSLTFHNNKNRNGLFNAFILGLTFSFGWTPCVGPVLSSVLALVASGGNGAWQGGVLMIIYTLGLGIPFLLISFASGIVLKQFNKLKPHILLLKKVGGVLIIVMGILLMTGTLNNLAQLFG
>NZ_CP028148.1|WP_002983778.1|1335972_1336596_-|TlpA-family-protein-disulfide-reductase
MKKGLLVTTGLACLGLLTACSTQDNMAKKEITQDKMSMAAKKKDKMSTSKDKSMMADKSSDKKMTNDGPMAPDFELKGIDGKTYRLSEFKGKKVYLKFWASWCSICLSTLADTEDLAKMSDKDYVVLTVVSPGHQGEKSEADFKKWFQGTDYKDLPVLLDPDGKLLEAYGVRSYPTEVFIGSDGVLAKKHIGYAKKSDIKKTLKGIH
>NZ_CP028148.1|WP_002989048.1|1334823_1335930_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MEHKWKLWLFIVGVVLLIGGASVLIQKGQAKAFSQGKPQLPAKKVKSTKVDPNAPVDQKMIYLAGGCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQTGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGTYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKKNPNGYCHIDINQATYPVIDESKYPKPSATEIKAKLSADEYRVTQKNETEKAFSNRYWDSFDAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPISPDVIRYKEDKSFNMTRTEVRSRSGDSHLGHVFTDGPKDQGGLRYCINSLSITFIPKADMEAKGYGYLLSSVE
>NZ_CP028148.1|WP_002983781.1|1333995_1334736_-|response-regulator
MYSLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQYKKGGQA
>NZ_CP028148.1|WP_002989050.1|1332265_1333999_-|sensor-histidine-kinase
MKRYPLLVQLISYVFVIVIALITTLGLLYYQTSSRNIRQLIERDTRQSIRQSSQFIDAYIKPLKETTSVLAKNTEIQAFASQIHQENDKQVLQLMKMVLATNSDLQAAVLVTKDGRTVPTNSQLTMKTSSDMMAEPWYKAAIDRQAMPVLTPARQLSLSSKKEWVVSVTQEVVDAAGHNLGVLRLDIAYPTIKASLDQLQLGRQGFAFIVNDKHEFVYHPKKSVYSSSKEMAAMKPYLAIQNGYTKDKTSFVYQKLIPNSQWTLVGVASLDQLHRVQRQIFWSFLGTGLLACLICGFATVLALRRWIRPIQQLQQVILAIQKGDRQLRAQETGSPELTDLAQQFNALLDQIDSLMVAVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGNEYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIKEVDRKGMIKVTVSDTAQHLVLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHYGEGYHMTIHSQSDQFTEIQLTLPKMHELMADDTQENE
>NZ_CP028148.1|WP_002989052.1|1331113_1332193_-|MmcQ/YjbR-family-DNA-binding-protein
MSLASDYFSRQTPIVEKLMAYGFEKRNNGYFYNERFMEEEFEAQLRIDEAGNIWDRVIDCDLEEDYLPLQQAAWQGTYTGQVRAAYLELLERLSVACFEVTPFQSMQANRLAKHITKEWSDPMDYPFEKHPDLATYRVGGKWYAMIFSLLADKLDQIPERLVGQTCEVMTVKVNPKDLPQLLQQEGIYPAYHMSKKNWISIILDDKVTDDKLWTLVTQSRQLVNPNGLSNPNGPDYWVIPANLKYYDIDAEFAANDVILWTQKAGIAVGDYVLIYMTAPVKSIRYACQVLETDIPNEGYRKNPNIDKLMRLRKCQQYKDGLLSFDLMKKHGVAAVRGPRRLSPQLIAFLKEKEYLKENN
>NZ_CP028148.1|WP_002989054.1|1330374_1331091_-|B3/4-domain-containing-protein
MVEFVADQSFWELFPDAKLGVVLLKDVQNQAESPEDVKQLLADSHELVKAYLTADNFSDNQVVQVYRKAYQHFKTKKGARSSIEALLKRVSNGQSIPSINPLVDIYNAASLRFGLPVGAEDSDSFIGDLRLTTTDGGDDFYLIGDADNNPTLPNELCYKDDIGAVCRCLNWRDGERTMVTEHTKNAFLIIEALDQEGQNRLQEALDFIEGSAKMYLHAITSVHVLDKDNPHVPLFTEN
>NZ_CP028148.1|WP_002989056.1|1329735_1330209_+|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDTHYEALAISQTRWEHRLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIVATVCGDDTCLIVCEDNEQAKACYETLSHYTPPFFFSNK
>NZ_CP028148.1|WP_002989058.1|1328913_1329594_-|Crp/Fnr-family-transcriptional-regulator
MIRREDYQYLRKLNDFRYFSIEQFDKIVGQMEFRKAKKDHILFFEGDKRDKLFLVTSGYFKVEQSDQSGTFMYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPVDLFEEYSLENRLQMKHLYSKMSKLLELHELRVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTTDIAQISGTTRETVSHVLRDLKKQELITIKGKYLTYLDKDYFLQYTK
>NZ_CP028148.1|WP_002983803.1|1327404_1328640_-|arginine-deiminase
MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI
>NZ_CP028148.1|WP_002989044.1|1337923_1338217_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTETPAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVDIKHRLTQIIDEKTDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>NZ_CP028148.1|WP_002989041.1|1338227_1339253_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQEDFYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYLGVSPALVKLCTENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDREESLEYAKRFILAKISNSRKYLLRFKRDHRQQIDTKLFEAVNDELIWALEMVQAADNKDSLRGIEGQAANQYFRIFNDLVLTDKKTFYFQGRSKRPPLDCVNALLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLQKKHFEVKENGSILLTENGRAIFIDLWQKRKHTEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFMV
>NZ_CP028148.1|WP_003060901.1|1339249_1339924_-|CRISPR-associated-protein-Cas4
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQVLHTKADNPYIKEKRKELLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDIVQLVAQTMCLEETLDCDINEGCLYYHSVNQRVIVPMTSALRQEVKELAAEMHEVYQSQMLPKAAYFKNCQLCSLVDICKPRLSKKTRSVSRYINEAMTSEEMDL
>NZ_CP028148.1|WP_002989033.1|1340775_1342671_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYEKAELADLVDHQKRSNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMADKQMIIFPVTADSVARSGSHPAPHPLVDKFAYYSAEMGQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTLILDSLIGPDYQNNQLKVTFCDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKTLHQSYISFVEANREKLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMLKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDDDTPPVITLATEDNKRIGKSFIKGQKLFANDATYYVAILNKTSNGRIALKYFRQLQASQLLTNLNKWQETYSWESRSKFGKSRLRTPTFHDILNVSYGVDRDRFLELDNDNFKSDQIQKLVASLIDGKPMPQSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLDHTNQNRSYLFGRLLAIFELIETLRYGLDGNNNDRITNAERYWTAYTGQPTKLMMLLENKIKPYEEPLKLNRRGSWMKLEKEKEEILELLNPLLETETMGKPLDYRFIFGYYAEKNYYYTKQNTEVTESEE
>NZ_CP028148.1|WP_002989031.1|1342670_1343399_-|type-I-C-CRISPR-associated-protein-Cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLLDDISQEEYETTVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAMEKGEN
>NZ_CP028148.1|WP_002989028.1|1343531_1345940_-|CRISPR-associated-helicase/endonuclease-Cas3
MRMILAHYDCKKDKKQSLDEHLWHVACSSRQEASIIGQGDVLFLIGLYHDLGKADRTFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKNRGVDKNERMTFNEMVGYVISAHHGMYDLCYYFDDAEYYGFNKFKNRINRDLDGYHYHEDIKGYALKLEKKLCDYGYKDLRELIDKAFDNYQQAMSSLNWQDKSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLKISPMDKTERSFLKHSYLAAIEQKYASFGQPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNVVKQANEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEIDHRICYGGNLGELAEIVELTIEEKQIFSRTELRKFDDSDQKVHLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDITDRPVYQLSTNMCAQHRLDLIAKIKTELQNNIPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILHKIGSPIDISTLNRDFFEYYYANNQGLMDYPLEDNLSIYDYLSLNIYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGEAEKKLAYLEELGMSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLFETTKSYLNGQILVLTSEYYDTERGVKYDSASFYF
>NZ_CP028148.1|WP_002989024.1|1346093_1348742_-|valine--tRNA-ligase
MTELSPKYNPAEVEAGRYQKWLDADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQGISRYDLGRDKFLDKVWEWKDEYATTIKEQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVATTRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKLIPIVGDEHADPEFGTGVVKITPAHDPNDFEVGQRHNLPQVNVMNDDGTMNELAGDFAGMDRFEARQATVAKLEELGALVNIEKRVHSVGHSERSGAVVEPRLSTQWFVKMDELAKQAMDNQETDDRVDFYPPRFNDTFLQWMENVHDWVISRQLWWGHQIPAWYNAEGEIYVGEEAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTDVEDFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFQNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADSLRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLEEAESNVAKVAASEAGNVTDQWILHNLNETIAKVTENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVITRSVLLYTLDKILRLLHPIMPFVTEEIYAQYAQGSIVTVDYPVVRPAFENEAAHKGVESLKDLIRAVRNARAEVNVAPSKPITILVKTADSELEDFFTSNVNYIKRFTNPEKLEISSAIAAPELAMTSIITGAEIYLPLADLLNVEEELVRLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYDATQERIAEMKKIKS
>NZ_CP028148.1|WP_002989022.1|1348743_1349307_-|AAA-family-ATPase
MNLIIIGAQASGKMTIGQEVARQTGMTLFHNHDSIDFVLRFMPWSQESTALIERIRFAFFETFAKTGQDMIFTIVIDFNDPNDVAMLEKIQAVFQSYDQEVLFVELKTDIEERLKRNRTENRLKHKPLKRNIEWSEQDIQSTMAYAVFNPEEPPKTLTHYQKINNTQLTAAETAQLIIQKMTHIKEN
>NZ_CP028148.1|WP_072135462.1|1349303_1349504_-|GNAT-family-N-acetyltransferase
MGFTLLDLHKIELGCYDYNKQSQAVARKLGFTLEANARDRKDVQGRRCGDMRFGLLRSEWEEQKQK
>NZ_CP028148.1|WP_002989018.1|1349907_1350303_-|hypothetical-protein
MAKQKNRKKALKLEMKRNGLLKKAGQVFDKAVESVETAVDKTISAGKNLVEKGSQTVENLTASKERLTLDEFAGQPVVAGIRSDLVETLYAEGIHSAQAFKEWTEKDLLALKGIGPATVKKLVENGASFKK

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Crispr_ID: NZ_CP028148_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028148_3

1745324-1745911

Orphan

Consensus_repeat	Method
NNANCTTTTTCACCTNGT	CRT

10 spacers

The CRISPR arrays of NZ_CP028148_3

>merge|NZ_CP028148|3|1745324-1745911|CRT
GGAGCTTTTTCGCCTGGTTGCTCTGGCATTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCTGGAGCTTTTTCGCCTGGTTGCTCTGGCATTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCTGGAGCTTTTTCACCTGGTTGCTCTGGCGTTTCTGGTGTTGGTGTCACTTCTGGGCTCTTTTCTGGAGCTTTTTCACCTGGTTGCTCTGGCGTTTCTGGTGTTGGTGTCACTTCTGGGCTCTTTTCTGGAGCTTTTTCACCTGGTTGCTCTGGCGTTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCTGGAGCTTTTTCGCCTGGTTGGCCTGCTTCGCCTTCTGGGCTCTTTTCTGGAGCTTTTTCACCTGGTTTGCCTGCTTCACCTTGTGGGCCTTGTGCGCCCGTTTCACCTTTTTCACCTTGTGGGCCTACTGGACCTTGAGCTCCAGTTTCACCGCGGTCACCTTTTTCACCCTTTTCGCCTGGAGCTCCAGCTTCACCTTGTGGGCCTTGAGCTCCGGTGTCACCTTTTTCACCTTGTGGGCCTTGGATTCCAGCTTCACCTTTTTCACCGCGG

>NZ_CP028148|3|2|1745324-1745911|CRT
GGAGCTTTTTCGCCTGGT	TGCTCTGGCATTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCT
GGAGCTTTTTCGCCTGGT	TGCTCTGGCATTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCT
GGAGCTTTTTCACCTGGT	TGCTCTGGCGTTTCTGGTGTTGGTGTCACTTCTGGGCTCTTTTCT
GGAGCTTTTTCACCTGGT	TGCTCTGGCGTTTCTGGTGTTGGTGTCACTTCTGGGCTCTTTTCT
GGAGCTTTTTCACCTGGT	TGCTCTGGCGTTTCTGGCGTTGGTGTCACTTCTGGGCTCTTTTCT
GGAGCTTTTTCGCCTGGT	TGGCCTGCTTCGCCTTCTGGGCTCTTTTCT
GGAGCTTTTTCACCTGGT	TTGCCTGCTTCACCTTGTGGGCCTTGTGCGCCCGTT
TCACCTTTTTCACCTTGT	GGGCCTACTGGACCTTGAGCTCCAGTTTCACCGCGG
TCACCTTTTTCACCCTTT	TCGCCTGGAGCTCCAGCTTCACCTTGTGGGCCTTGAGCTCCGGTG
TCACCTTTTTCACCTTGT	GGGCCTTGGATTCCAGCT
TCACCTTTTTCACCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028148.1\|WP_002988023.1\|1732199_1732574_-\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|273542
NZ_CP028148.1\|WP_002987985.1\|1753954_1754818_+\|IS982-like-element-ISSpy2-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP028148.1\|WP_002988014.1\|1738125_1739259_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP028148.1\|WP_002988020.1\|1732688_1736186_-\|pullulanase	unknown	unknown	gnl\|CDD\|273973
NZ_CP028148.1\|WP_002987991.1\|1751766_1752720_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP028148.1\|WP_002988027.1\|1731718_1732084_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235822
NZ_CP028148.1\|WP_078230061.1\|1753325_1753535_-\|RhuM	unknown	unknown	gnl\|CDD\|379118
NZ_CP028148.1\|WP_002988009.1\|1740745_1742068_+\|streptokinase	unknown	unknown	gnl\|CDD\|367201
NZ_CP028148.1\|WP_002987995.1\|1748474_1750661_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|131058
NZ_CP028148.1\|WP_002987993.1\|1751017_1751767_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP028148.1\|WP_024623400.1\|1739556_1740405_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP028148.1\|WP_002988006.1\|1742165_1742609_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP028148.1\|WP_002987983.1\|1754961_1755303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028148.1\|WP_011527777.1\|1753658_1753853_+\|IS3-family-transposase	unknown	unknown	unknown
NZ_CP028148.1\|WP_002987990.1\|1752790_1753261_-\|DUF3013-family-protein	unknown	unknown	gnl\|CDD\|337951
NZ_CP028148.1\|WP_002987997.1\|1747573_1748392_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197313
NZ_CP028148.1\|WP_002988029.1\|1730750_1731500_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
NZ_CP028148.1\|WP_002987999.1\|1746717_1747179_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179443
NZ_CP028148.1\|WP_002988003.1\|1742623_1744843_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP028148.1\|WP_002988017.1\|1736383_1737997_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472

Protein	Function_ID	Function_description	E-value
NZ_CP028148.1\|WP_002988023.1\|1732199_1732574_-\|thiol-reductase-thioredoxin	gnl\|CDD\|273542	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.	9.90343e-15
NZ_CP028148.1\|WP_002987985.1\|1753954_1754818_+\|IS982-like-element-ISSpy2-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.31927e-29
NZ_CP028148.1\|WP_002988014.1\|1738125_1739259_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP028148.1\|WP_002988020.1\|1732688_1736186_-\|pullulanase	gnl\|CDD\|273973	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae () and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (.	0
NZ_CP028148.1\|WP_002987991.1\|1751766_1752720_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	2.64488e-145
NZ_CP028148.1\|WP_002988027.1\|1731718_1732084_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235822	PRK06531, yajC, preprotein translocase subunit YajC; Validated.	4.20228e-61
NZ_CP028148.1\|WP_078230061.1\|1753325_1753535_-\|RhuM	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	7.37174e-11
NZ_CP028148.1\|WP_002988009.1\|1740745_1742068_+\|streptokinase	gnl\|CDD\|367201	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family.	1.04777e-17
NZ_CP028148.1\|WP_002987995.1\|1748474_1750661_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|131058	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP028148.1\|WP_002987993.1\|1751017_1751767_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	9.84308e-85
NZ_CP028148.1\|WP_024623400.1\|1739556_1740405_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.16738e-52
NZ_CP028148.1\|WP_002988006.1\|1742165_1742609_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	2.24779e-94
NZ_CP028148.1\|WP_002987990.1\|1752790_1753261_-\|DUF3013-family-protein	gnl\|CDD\|337951	pfam11217, DUF3013, Protein of unknown function (DUF3013). This bacterial family of proteins with unknown function appear to be restricted to Firmicutes.	4.63265e-65
NZ_CP028148.1\|WP_002987997.1\|1747573_1748392_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197313	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins. This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	5.94647e-100
NZ_CP028148.1\|WP_002988029.1\|1730750_1731500_-\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	3.69996e-177
NZ_CP028148.1\|WP_002987999.1\|1746717_1747179_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179443	PRK02551, PRK02551, flavoprotein NrdI; Provisional.	6.75388e-95
NZ_CP028148.1\|WP_002988003.1\|1742623_1744843_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP028148.1\|WP_002988017.1\|1736383_1737997_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0

>NZ_CP028148.1|WP_002988003.1|1742623_1744843_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MAKIMNVTGEEVIALAATYMTKADVAFVAKALAYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDEIEADFGHDARDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMKEKRREREALVEAIVSKVKTYTTQQGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGPIEIQIRTKDMHQVAEYGVAAHWAYKKGVRGKVNQAEQAVGMNWIKELVELQDASNGDAVDFVDSVKEDIFSERIYVFTPTGAVQELPKESGPIDFAYAIHTQIGEKATGAKVNGRMVPLTAKLKTGDVVEIITNANSFGPSRDWVKLVKTNKARNKIRQFFKNQDKELSVNKGRDLLVSYFQEQGYVANKYLDKKRIEAILPKVSVKSEESLYAAVGFGDISPISVFNKLTEKERREEERAKAKAEAEELVKGGEVKHENKDVLKVRSENGVIIQGASGLLMRIAKCCNPVPGDPIDGYITKGRGIAIHRSDCHNIKSQDGYQERLIEVEWDLDNSSKDYQAEIDIYGLNRSGLLNDVLQILSNSTKSISTVNAQPTKDMKFANIHVSFGIPNLTHLTTVVEKIKAVPDVYSVKRTNG
>NZ_CP028148.1|WP_002988006.1|1742165_1742609_-|D-tyrosyl-tRNA(Tyr)-deacylase
MKLVLQRVKEASVSIDGKIAGAINQGLLLLVGVGPDDNAEDLAYAVRKIVNMRIFSDADGKMNQSIQDIKGSILSVSQFTLYADTKKGNRPAFTGAAKPDLASQLYDSFNEQLAEFVKVERGVFGADMQVSLINDGPVTIILDTKCH
>NZ_CP028148.1|WP_002988009.1|1740745_1742068_+|streptokinase
MKNYLSFGMFALLFALTFGTVKPVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQEISLKFFEIDLTSRPAHGGKTEQGLSPKSKPFATNSSAMPHKLEKADLLKAIQEQLIANVHSNDGYFEVIDFASDATITDRNGKVYFADRDDSVTLPTQPVQEFLLSGHVRVRPYQPKAVHNSAERVNVNYEVSFVSETGNLDFTPSLKERYHLTTLAVGDSLSSQELAAIAQFILSKEHPDYIITKRDSSIVTHDNDIFRTILPMDQEFTYHIKDREQAYKANSKTGIVEKTNNTDLISEKYYVLKKGEEPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNLDAFGIMDYTLTGKVEDNHNDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEEREVYSYLRYTGTPIPDNPKDK
>NZ_CP028148.1|WP_024623400.1|1739556_1740405_-|PucR-family-transcriptional-regulator
MELKDYFPEMQVGPHPLGDKEWVSVKEGDQYVHFPKSCLSEKERLLLEVGLDQCEVLQPLGSPWQRYLLDHQGNPPQLFETSQFIYLNHQQALPADLVELLQQMIAGLEVILPISATQTAFLCRQAVSIKVLRWLEDLLPTLESDFGLALTMFVGNAWYQVAAGTLRECFEEECQLLTAYLRQQSGRKLLTFSGLMLWSLLSHHTFLALTRQFQQFLSPQSDMADVVHALWSEHGNLVQTAQRLYIHRNSLQYKLDKFAQQSGLHLKQLDDLAFAHLFLLKY
>NZ_CP028148.1|WP_002988014.1|1738125_1739259_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MVELNLNHIYKKYPNTTHYAVEDFDLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKYKKDDIDRRVKEAAQILGLTEFLERKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDAKLRVSMRAEIAKIHRRIGSTTIYVTHDQTEAMTLADRIVIMSATKNPQGNGTIGKIEQVGSPQELYSLPANKFVAGFIGSPAMNFFEVEVKDGRIVSEDGLAIAIPEGQAKMLEAAGYKGKKVTFGIRPEDISSRQIVHDTYPSATVTAEVLVSELLGSETMLYVKLGQTEFASRVDARDFHSPGEQVSLTFNVAKGHFFDRDTEQAIR
>NZ_CP028148.1|WP_002988017.1|1736383_1737997_-|alpha-glucosidase
MKKHWWHKATIYQIYPRSFKDTNGNGIGDLKGITSQLDYLQKLGITAIWLSPVYQSPMDDNGYDISDYEAIADVFGDMADMDELLAAANERGIKIIMDLVVNHTSDEHAWFVEARENPNSPERDFYIWRDEPNDLTSIFSGSAWEYDNASGQYYLHLFSKRQPDLNWENEALRHKIYDMMNFWIAKGIGGFRMDVIDLIGKVPDLEITGNGPRLHDYLKEMNQATFGNHDVMTVGETWGATPEIARQYSRPENKELSMVFQFEHVGLQHKPDAPKWDYAKELDVPALKAIFSKWQTELKLGEGWNSLFWNNHDLPRVLSIWGNDSTYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLTEVNDIESLNYAKEAMGNGVSAARVMDSIRKVGRDNARTPMQWSKDTHAGFSKAQETWLPVNPNYQDINVADALADPDSIFYTYQQLIALRKEQDWLVEADYHLLPTADKVFAYQRQLGEETYVIVVNVSDQEQVFAKDLAGAEVVITNTDVDKVLETKHLQPWDAFCLKLKA
>NZ_CP028148.1|WP_002988020.1|1732688_1736186_-|pullulanase
MKKKVNQGSKRYQYLLKKWGIGFVIAATGTVMLGCTPSILTHQVAAKTIVGLARDEAQQGDGNAKSGDGFQSSSKEAKPVLDSSSANPASIAEHHLRMHFKTLPAGESLGSLGLWVWGDVDQPSKDWPNGAITMTKAKKDDYGYYLDVPLAAKHRQQVSYLINNKAGEHLSKDQHISLLTPKMNEVWIDENYHAHAYRPLKKGYLRINYHNQSGHYDNLAVWTFKDVKTPTTDWPNGLDLSHKGPYGAYVDVPLKEGANEIGFLILDKSKTGDAIKVQPKDYLFKELDNHTQVFVKDTDPKVYNNPYYIDQVSLKGAEQTTPNEIKAIFTTLDGLDEDAVKQNIKITDKAGKTVAIDELTLDKDTSVMTLKGDFKAQGAVYTVTFGEVSQVARQSWQLKDKLYAYDGELGATLAKDGSVDLALWSPSADSVKVVVYDKQDQTKVLGQADLTKSDKGVWRAHLTSDSVKGISDYTGYYYLYEITRGQEKVMVLDPYAKSLAAWNDATATDDIKTAKAAFIDPSKLGPTGLDFAKINNFKKREDAIIYEAHVRDFTSDKALEGKLTHPYGTFSAFVEQLDYLKDLGVTHVQLLPVLSYFYANELDKSRSTAYTSSDNNYNWGYDPQHYFALSGMYSANPNDPALRIAELKNLVNEIHKRGMGVIFDVVYNHTARTYLFEDLEPNYYHFMNADGTARESFGGGRLGTTHAMSRRILVDSITYLTREFKVDGFRFDMMGDHDAAAIEQAFKAAKAINPNTIMIGEGWRTYQGDEGKKEIAADQDWMKATNTVGVFSDDIRNTLKSGFPNEGTAAFITGGAKNLEGLFKTIKAQPSNFEADAPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEEIHKRIRLGNTMILTAQGTAFIHSGQEYGRTKQLLNPDYKTKVSDDKVPNKATLIDAVAKYPYFIHDSYDSSDAVNHFDWAKATDSIAHPISNQTKAYTQGLIALRRSTDAFTKATKAEVDRDVTLITQAGQDGIQQEDLIMGYQTVASNGDRYAVFVNADNKTRKVVLPQAYRYLLGAQVLADAEQAGVTAIAKPKGVQFTKEGLTIDGLTALVLKVSSKTANPSQQKSQTGNHQTKTPDGSKDLDKSLMTRPKRAKTNQKLPKTGEASSKGLLAAGVALLLLAISLLMKRQKD
>NZ_CP028148.1|WP_002988023.1|1732199_1732574_-|thiol-reductase-thioredoxin
MRPKEKETSMTFEEIVANFIPSSIAEVTSAIASGKDMIVFLGRSSCPYCRRFAPKLAQVATDNQKEVYFVDSENAADAAELAAFRENYQLVTVPALLVSYDQHQRAVCDSSLTPDDILAFLTRE
>NZ_CP028148.1|WP_002988027.1|1731718_1732084_-|preprotein-translocase-subunit-YajC
MGFPTILMFVVMLGLIWFMQRQQKKQAQERQNQLNAIEKGDEVVTIGGMFAIVDEVDTTAKKIVLDVDGVFLTFELSAIKRIVTKATTETTLVETEETSVVNEPAVETVDSTDTDSAIESH
>NZ_CP028148.1|WP_002988029.1|1730750_1731500_-|isoprenyl-transferase
MFGLKAKSTKKVLGSIPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRPQDEVSFIMNLPVTFFDKYVPVLHENNVKIQMIGETSRLPEDTLAALNAAIDKTKRNTGLILNFALNYGGRAEITSAVRFIAQDVLDAKLNPGDITEDLIANYLMTDHLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKAELLKAIADYNHRQRRFGKV
>NZ_CP028148.1|WP_002987999.1|1746717_1747179_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MPQITLVFISLSGNTLSFVKRLSLYLADNYDYHVKQINIKDLKHETFPVKEEFVAILPTYLEGGNGVDSGEVEILTTPLGEFIAAHGNAQHCLGIIGSGNKNFNHQYCLTAKQYAKRFGFPLLGDFELRGTPDDISRLAQVIMEASSRHSSNS
>NZ_CP028148.1|WP_002987997.1|1747573_1748392_-|endonuclease/exonuclease/phosphatase-family-protein
MTKVLTLNTHSWMQANTLKKLVALAEHILAEKYDIICLQEINQLIESELATDLPRYQALSGTPSIHKDHFALLLIHYLQKRGQHYYWSWAYNHIGYDIYQEGVAILSKQPIHVSDILVSAMADETDYHTRRSLIAKTTLDGKEVAVVNVHLSWFDKGFLGEWEKLEKELLTLNCPLLLMGDFNNPTDQDGYQVMMGSPLNLQDSHKVADHVFGDHSIVADIDGWQGNKEALKVDHVFTSKDFIIRSSKITFEGGDAPVVSDHYGLEVTLDWR
>NZ_CP028148.1|WP_002987995.1|1748474_1750661_-|PTS-transporter-subunit-EIIC
MKTSFKQLFRFEFWQKFGKCLMVVIAVMPAAGLMISIGNSIPMINHDSAFLASLGNIIAQIGWAVIVNLHLLFALAIGGSWAKERAGGAFASGLAFVLINRITGAFYGVSSAMLADPEAKITSLLGTQMIVKDYFTSVLESPALNTGVFVGIIAGFVGATAYNKYYNYRKLPEILTFFNGKRFVPFVVILRSIFVALILVVVWPVIQSGINSFGMWIASSQDSAPILAPFLYGTLERLLLPFGLHHMLTIPMNYTALGGTYEVMTGAAAGTKVFGQDPLWLAWVTDLVHLKGSDASAYSHLMDSVTPARFKVGQMIGATGTLMGVALAMYRNVDADKKHTYKMMFISAAAAVFLTGVTEPLEYLFMFAAMPLYIVYALVQGASFAMADLVNLRVHSFGNIELLTRTPMALKAGLGMDVINFVWVSILFAVIMYFIADMMIKKMHLATAGRLGNYDADILGDRNTQATPTQVADSNSQVVQIINLLGGSGNIDDVDACMTRLRVTVKDPAKVGAEDDWKKAGAMGLIQKGNGVQAVYGPKADILKSDIQDLLDSGALIPEVNMSQLTSKPTPAKDFKHVTEEVLSVADGMVLPITGVKDQVFAAKMMGDGFAVEPTHGNIYAPVAGLVTSVFPTKHAFGLLTDNGLEVLVHVGLDTVALNGVPFSVKVSEGQRVHAGDLLVVADLAAIQSAERETTIVVAFTNTTEIQDVTLTSLGNQPAKTKVATVEL
>NZ_CP028148.1|WP_002987993.1|1751017_1751767_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQQYFIKGKAEKKVTITDKDTIKHMFQVMRLTDEAEVVLVFDDGVKYLAKVTNSMAHELEIIEILPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAGAIKVGLGPRIMRTETAPLYALSALSYALELQASK
>NZ_CP028148.1|WP_002987991.1|1751766_1752720_-|50S-ribosomal-protein-L11-methyltransferase
METWQEVTVHVHRDAQEAVSHVLIETGSQGVAIADSADYIGQKDRFGELYPDVEQSDMIAITAYYPSSTNLADVIATINEQLAELASFGLQVGQVTVDSQELAEEDWADNWKKYYEPARITHDLTIVPSWTDYDASAGEKVIKLDPGMAFGTGTHPTTKMSLFALEQVLRGGETVIDVGTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIHVAAGDLLKGVSQEADVIVANILADILVLLTDDAYRLVKKEGYLILSGIISEKLDMVLETAFSAGFFLETHMVQGEWNALVFKKTDDISGVIGG
>NZ_CP028148.1|WP_002987990.1|1752790_1753261_-|DUF3013-family-protein
MAKYGFLSVLEEEMDKHFQYDYAMDWDKKNHAVEVTFVLEAQNKEAIKTIDDSGEVTQDDIVFEDYVLFYNPAKSQFDAADYLVTIPFDAKKGFSREFLAYFAQFLNDVAIEGHSDLMDFLADDSKADFFLEWNAQAFEEGQQGLEEAASYPYPRY
>NZ_CP028148.1|WP_078230061.1|1753325_1753535_-|RhuM
MEGLIERRHSFIKEHFVASIDNFLNFREYRMLEGKGSISMKFAKEKASREYVEFNKLQKINPDKGHKKI
>NZ_CP028148.1|WP_011527777.1|1753658_1753853_+|IS3-family-transposase
MYNELYQFDIEYHSFRRKLLEISRECALEELDAIKTRDYVHWWNYHRIHSSLSYQTHMTLRNIA
>NZ_CP028148.1|WP_002987985.1|1753954_1754818_+|IS982-like-element-ISSpy2-family-transposase
MSHLQYTAKSHHLQWNVTQLSTICHQLYRDYCPEGLKHRRNISLSKVSDESLLVLLVLQAELGIKSQRHFYRICQLFPCGHLLERSRFNRRARQLIWLVQVIRQAMNARISPDTIVIIDSFPLPLCQPVRNHRAHIFKGVADIGYNTSKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIKAVHELLEECDQSIILADLGYLSRELKNNLEQKGYQLWTPLRQNMTGAKQHNHWRVMAMRRTIETRFSELCSLFDIEHTLTRGVTGLQLRIEQIILAYNLKYVEFN
>NZ_CP028148.1|WP_002987983.1|1754961_1755303_-|hypothetical-protein
MKKTLLLSAAALMVASTVALSTNSVSASSYLNNPYYNTSRFLRQNGTQVLREARYASELKIRNLLDQYGIVGEEYKGYFNCYYRQARQALSLGQVDDVINSLERNLQERQDND

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP028148_2	2.1\|1337511\|32\|NZ_CP028148\|CRT	1337511-1337542	32	NZ_CP028148.1	8229-8260	1	0.969
NZ_CP028148_2	2.5\|1337512\|33\|NZ_CP028148\|PILER-CR	1337512-1337544	33	NZ_CP028148.1	8228-8260	1	0.97
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NZ_CP028148.1	1264858-1264891	2	0.941
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	NZ_CP028148.1	1264857-1264891	2	0.943

1. spacer 2.1|1337511|32|NZ_CP028148|CRT matches to position: 8229-8260, mismatch: 1, identity: 0.969

aactaattccgcaaaggcattgttcatataat	CRISPR spacer
aactaattccgcaaaggcattgtccatataat	Protospacer
***********************.********

2. spacer 2.5|1337512|33|NZ_CP028148|PILER-CR matches to position: 8228-8260, mismatch: 1, identity: 0.97

aactaattccgcaaaggcattgttcatataatg	CRISPR spacer
aactaattccgcaaaggcattgtccatataatg	Protospacer
***********************.*********

3. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to position: 1264858-1264891, mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

4. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to position: 1264857-1264891, mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448960	Streptococcus phage Javan492, complete genome	11317-11350	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448762	Streptococcus phage Javan447, complete genome	11444-11477	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NC_004585	Streptococcus prophage 315.2, complete genome	13501-13534	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448966	Streptococcus phage Javan508, complete genome	13356-13389	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448970	Streptococcus phage Javan516, complete genome	15236-15269	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448795	Streptococcus phage Javan527, complete genome	17274-17307	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448790	Streptococcus phage Javan515, complete genome	11731-11764	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448772	Streptococcus phage Javan483, complete genome	13371-13404	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448793	Streptococcus phage Javan523, complete genome	12062-12095	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448954	Streptococcus phage Javan476, complete genome	11399-11432	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448957	Streptococcus phage Javan484, complete genome	15312-15345	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448792	Streptococcus phage Javan521, complete genome	17467-17499	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448679	Streptococcus phage Javan137, complete genome	15481-15513	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	NC_004584	Streptococcus prophage 315.1, complete genome	17060-17092	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448770	Streptococcus phage Javan477, complete genome	17467-17499	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448978	Streptococcus phage Javan532, complete genome	16955-16987	0	1.0
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448785	Streptococcus phage Javan507, complete genome	16955-16987	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448960	Streptococcus phage Javan492, complete genome	11317-11351	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448762	Streptococcus phage Javan447, complete genome	11444-11478	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	NC_004585	Streptococcus prophage 315.2, complete genome	13501-13535	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448966	Streptococcus phage Javan508, complete genome	13356-13390	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448970	Streptococcus phage Javan516, complete genome	15236-15270	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448795	Streptococcus phage Javan527, complete genome	17274-17308	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448790	Streptococcus phage Javan515, complete genome	11731-11765	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448772	Streptococcus phage Javan483, complete genome	13371-13405	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448793	Streptococcus phage Javan523, complete genome	12062-12096	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448954	Streptococcus phage Javan476, complete genome	11399-11433	0	1.0
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448957	Streptococcus phage Javan484, complete genome	15312-15346	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448792	Streptococcus phage Javan521, complete genome	17467-17500	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448679	Streptococcus phage Javan137, complete genome	15481-15514	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	NC_004584	Streptococcus prophage 315.1, complete genome	17060-17093	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448770	Streptococcus phage Javan477, complete genome	17467-17500	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448978	Streptococcus phage Javan532, complete genome	16955-16988	0	1.0
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448785	Streptococcus phage Javan507, complete genome	16955-16988	0	1.0
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448860	Streptococcus phage Javan172, complete genome	10388-10421	1	0.971
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448682	Streptococcus phage Javan143, complete genome	9628-9661	1	0.971
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448951	Streptococcus phage Javan470, complete genome	13895-13928	1	0.971
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448848	Streptococcus phage Javan126, complete genome	14091-14123	1	0.97
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448857	Streptococcus phage Javan164, complete genome	14091-14123	1	0.97
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448677	Streptococcus phage Javan133, complete genome	15082-15114	1	0.97
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	NC_009018	Streptococcus phage phi3396, complete genome	15111-15143	1	0.97
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448860	Streptococcus phage Javan172, complete genome	10388-10422	1	0.971
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448682	Streptococcus phage Javan143, complete genome	9628-9662	1	0.971
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448951	Streptococcus phage Javan470, complete genome	13895-13929	1	0.971
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448960	Streptococcus phage Javan492, complete genome	11317-11352	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448762	Streptococcus phage Javan447, complete genome	11444-11479	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	NC_004585	Streptococcus prophage 315.2, complete genome	13501-13536	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448966	Streptococcus phage Javan508, complete genome	13356-13391	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448970	Streptococcus phage Javan516, complete genome	15236-15271	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448795	Streptococcus phage Javan527, complete genome	17274-17309	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448790	Streptococcus phage Javan515, complete genome	11731-11766	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448772	Streptococcus phage Javan483, complete genome	13371-13406	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448793	Streptococcus phage Javan523, complete genome	12062-12097	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448954	Streptococcus phage Javan476, complete genome	11399-11434	1	0.972
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448957	Streptococcus phage Javan484, complete genome	15312-15347	1	0.972
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448792	Streptococcus phage Javan521, complete genome	17467-17501	1	0.971
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448679	Streptococcus phage Javan137, complete genome	15481-15515	1	0.971
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	NC_004584	Streptococcus prophage 315.1, complete genome	17060-17094	1	0.971
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448770	Streptococcus phage Javan477, complete genome	17467-17501	1	0.971
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448978	Streptococcus phage Javan532, complete genome	16955-16989	1	0.971
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448785	Streptococcus phage Javan507, complete genome	16955-16989	1	0.971
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448973	Streptococcus phage Javan522, complete genome	11652-11685	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448798	Streptococcus phage Javan533, complete genome	11838-11871	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448848	Streptococcus phage Javan126, complete genome	7971-8004	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448857	Streptococcus phage Javan164, complete genome	7971-8004	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448955	Streptococcus phage Javan478, complete genome	12575-12608	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448677	Streptococcus phage Javan133, complete genome	8963-8996	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448953	Streptococcus phage Javan474, complete genome	14112-14145	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NC_009018	Streptococcus phage phi3396, complete genome	8253-8286	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NC_028700	Streptococcus phage T12, complete genome	11276-11309	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448859	Streptococcus phage Javan170, complete genome	13830-13863	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448778	Streptococcus phage Javan493, complete genome	11667-11700	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448686	Streptococcus phage Javan157, complete genome	13615-13648	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448958	Streptococcus phage Javan486, complete genome	11412-11445	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448967	Streptococcus phage Javan510, complete genome	11839-11872	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448854	Streptococcus phage Javan146, complete genome	14156-14189	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448950	Streptococcus phage Javan464, complete genome	11322-11355	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448764	Streptococcus phage Javan457, complete genome	7339-7372	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448688	Streptococcus phage Javan161, complete genome	13784-13817	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	MK448782	Streptococcus phage Javan501, complete genome	14298-14331	2	0.941
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NC_004588	Streptococcus prophage 315.5, complete genome	11988-12021	2	0.941
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448771	Streptococcus phage Javan481, complete genome	29841-29874	2	0.941
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448961	Streptococcus phage Javan494, complete genome	34985-35018	2	0.941
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448766	Streptococcus phage Javan465, complete genome	35857-35890	2	0.941
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448958	Streptococcus phage Javan486, complete genome	35234-35267	2	0.941
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448793	Streptococcus phage Javan523, complete genome	36512-36545	2	0.941
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448860	Streptococcus phage Javan172, complete genome	16970-17002	2	0.939
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MK448682	Streptococcus phage Javan143, complete genome	17323-17355	2	0.939
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448973	Streptococcus phage Javan522, complete genome	11652-11686	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448798	Streptococcus phage Javan533, complete genome	11838-11872	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448848	Streptococcus phage Javan126, complete genome	7971-8005	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448857	Streptococcus phage Javan164, complete genome	7971-8005	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448955	Streptococcus phage Javan478, complete genome	12575-12609	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448677	Streptococcus phage Javan133, complete genome	8963-8997	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448953	Streptococcus phage Javan474, complete genome	14112-14146	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	NC_009018	Streptococcus phage phi3396, complete genome	8253-8287	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	NC_028700	Streptococcus phage T12, complete genome	11276-11310	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448859	Streptococcus phage Javan170, complete genome	13830-13864	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448778	Streptococcus phage Javan493, complete genome	11667-11701	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448686	Streptococcus phage Javan157, complete genome	13615-13649	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448958	Streptococcus phage Javan486, complete genome	11412-11446	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448967	Streptococcus phage Javan510, complete genome	11839-11873	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448854	Streptococcus phage Javan146, complete genome	14156-14190	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448950	Streptococcus phage Javan464, complete genome	11322-11356	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448764	Streptococcus phage Javan457, complete genome	7339-7373	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448688	Streptococcus phage Javan161, complete genome	13784-13818	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	MK448782	Streptococcus phage Javan501, complete genome	14298-14332	2	0.943
NZ_CP028148_2	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	NC_004588	Streptococcus prophage 315.5, complete genome	11988-12022	2	0.943
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448771	Streptococcus phage Javan481, complete genome	29841-29875	2	0.943
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448961	Streptococcus phage Javan494, complete genome	34985-35019	2	0.943
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448848	Streptococcus phage Javan126, complete genome	14091-14124	2	0.941
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448857	Streptococcus phage Javan164, complete genome	14091-14124	2	0.941
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448677	Streptococcus phage Javan133, complete genome	15082-15115	2	0.941
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	NC_009018	Streptococcus phage phi3396, complete genome	15111-15144	2	0.941
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448860	Streptococcus phage Javan172, complete genome	10388-10423	2	0.944
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448682	Streptococcus phage Javan143, complete genome	9628-9663	2	0.944
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448951	Streptococcus phage Javan470, complete genome	13895-13930	2	0.944
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448942	Streptococcus phage Javan448, complete genome	21269-21302	3	0.912
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448964	Streptococcus phage Javan502, complete genome	30126-30159	3	0.912
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448763	Streptococcus phage Javan451, complete genome	30354-30387	3	0.912
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	MK448777	Streptococcus phage Javan491, complete genome	30227-30260	3	0.912
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448766	Streptococcus phage Javan465, complete genome	35857-35891	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448958	Streptococcus phage Javan486, complete genome	35234-35268	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448793	Streptococcus phage Javan523, complete genome	36512-36546	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448942	Streptococcus phage Javan448, complete genome	21269-21303	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448964	Streptococcus phage Javan502, complete genome	30126-30160	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448763	Streptococcus phage Javan451, complete genome	30354-30388	3	0.914
NZ_CP028148_2	2.7\|1337644\|35\|NZ_CP028148\|PILER-CR	1337644-1337678	35	MK448777	Streptococcus phage Javan491, complete genome	30227-30261	3	0.914
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448860	Streptococcus phage Javan172, complete genome	16970-17003	3	0.912
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MK448682	Streptococcus phage Javan143, complete genome	17323-17356	3	0.912
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448973	Streptococcus phage Javan522, complete genome	11652-11687	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448798	Streptococcus phage Javan533, complete genome	11838-11873	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448848	Streptococcus phage Javan126, complete genome	7971-8006	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448857	Streptococcus phage Javan164, complete genome	7971-8006	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448955	Streptococcus phage Javan478, complete genome	12575-12610	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448677	Streptococcus phage Javan133, complete genome	8963-8998	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448953	Streptococcus phage Javan474, complete genome	14112-14147	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	NC_009018	Streptococcus phage phi3396, complete genome	8253-8288	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	NC_028700	Streptococcus phage T12, complete genome	11276-11311	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448859	Streptococcus phage Javan170, complete genome	13830-13865	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448778	Streptococcus phage Javan493, complete genome	11667-11702	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448686	Streptococcus phage Javan157, complete genome	13615-13650	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448958	Streptococcus phage Javan486, complete genome	11412-11447	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448967	Streptococcus phage Javan510, complete genome	11839-11874	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448854	Streptococcus phage Javan146, complete genome	14156-14191	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448950	Streptococcus phage Javan464, complete genome	11322-11357	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448764	Streptococcus phage Javan457, complete genome	7339-7374	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448688	Streptococcus phage Javan161, complete genome	13784-13819	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	MK448782	Streptococcus phage Javan501, complete genome	14298-14333	3	0.917
NZ_CP028148_2	2.10\|1337576\|36\|NZ_CP028148\|CRISPRCasFinder	1337576-1337611	36	NC_004588	Streptococcus prophage 315.5, complete genome	11988-12023	3	0.917
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448771	Streptococcus phage Javan481, complete genome	29841-29876	3	0.917
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448961	Streptococcus phage Javan494, complete genome	34985-35020	3	0.917
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448848	Streptococcus phage Javan126, complete genome	14091-14125	3	0.914
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448857	Streptococcus phage Javan164, complete genome	14091-14125	3	0.914
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448677	Streptococcus phage Javan133, complete genome	15082-15116	3	0.914
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	NC_009018	Streptococcus phage phi3396, complete genome	15111-15145	3	0.914
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448766	Streptococcus phage Javan465, complete genome	35857-35892	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448958	Streptococcus phage Javan486, complete genome	35234-35269	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448793	Streptococcus phage Javan523, complete genome	36512-36547	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448942	Streptococcus phage Javan448, complete genome	21269-21304	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448964	Streptococcus phage Javan502, complete genome	30126-30161	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448763	Streptococcus phage Javan451, complete genome	30354-30389	4	0.889
NZ_CP028148_2	2.11\|1337643\|36\|NZ_CP028148\|CRISPRCasFinder	1337643-1337678	36	MK448777	Streptococcus phage Javan491, complete genome	30227-30262	4	0.889
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448860	Streptococcus phage Javan172, complete genome	16970-17004	4	0.886
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MK448682	Streptococcus phage Javan143, complete genome	17323-17357	4	0.886
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	136487-136521	6	0.829
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	136487-136519	7	0.788
NZ_CP028148_3	3.6\|1745657\|30\|NZ_CP028148\|CRT	1745657-1745686	30	KM659089	Pseudomonas sp. LM12 plasmid pLM12P1, complete sequence	1877-1906	7	0.767
NZ_CP028148_3	3.7\|1745705\|36\|NZ_CP028148\|CRT	1745705-1745740	36	MN694312	Marine virus AFVG_250M269, complete genome	21510-21545	7	0.806
NZ_CP028148_2	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	285677-285710	8	0.765
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	136487-136520	8	0.765
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	NC_015054	Yersinia pestis Java 9 plasmid pJARS35, complete sequence	32796-32829	9	0.735
NZ_CP028148_2	2.4\|1337710\|33\|NZ_CP028148\|CRT	1337710-1337742	33	MG592466	Vibrio phage 1.091.O._10N.286.52.B12, partial genome	24784-24816	9	0.727
NZ_CP028148_2	2.8\|1337711\|34\|NZ_CP028148\|PILER-CR	1337711-1337744	34	MG592466	Vibrio phage 1.091.O._10N.286.52.B12, partial genome	24784-24817	9	0.735
NZ_CP028148_3	3.7\|1745705\|36\|NZ_CP028148\|CRT	1745705-1745740	36	MN850565	Escherichia phage ukendt, complete genome	132050-132085	9	0.75
NZ_CP028148_3	3.7\|1745705\|36\|NZ_CP028148\|CRT	1745705-1745740	36	AP014301	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C84, * SEQUENCING IN PROGRESS *	716-751	9	0.75
NZ_CP028148_2	2.12\|1337710\|35\|NZ_CP028148\|CRISPRCasFinder	1337710-1337744	35	MG592466	Vibrio phage 1.091.O._10N.286.52.B12, partial genome	24784-24818	10	0.714
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	125358-125391	11	0.676
NZ_CP028148_2	2.3\|1337643\|34\|NZ_CP028148\|CRT	1337643-1337676	34	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	142922-142955	11	0.676

1. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

2. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

3. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

4. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

5. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

6. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

7. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

8. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

9. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

10. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

11. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataa	Protospacer
**********************************

12. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

13. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

14. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

15. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

16. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

17. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcga	Protospacer
*********************************

18. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

19. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

20. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

21. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

22. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

23. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

24. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

25. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

26. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

27. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

28. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataat	Protospacer
***********************************

29. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

30. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

31. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

32. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

33. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

34. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 0, identity: 1.0

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgat	Protospacer
**********************************

35. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataa	Protospacer
*********************** **********

36. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgactttaataaaataa	Protospacer
******************.***************

37. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataa	Protospacer
*********************** **********

38. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 1, identity: 0.97

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcga	Protospacer
************************.********

39. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 1, identity: 0.97

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcga	Protospacer
************************.********

40. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 1, identity: 0.97

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcga	Protospacer
************************.********

41. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 1, identity: 0.97

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcga	Protospacer
************************.********

42. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataat	Protospacer
*********************** ***********

43. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgactttaataaaataat	Protospacer
******************.****************

44. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 1, identity: 0.971

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataat	Protospacer
*********************** ***********

45. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

46. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

47. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

48. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

49. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

50. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

51. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

52. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

53. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

54. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

55. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 1, identity: 0.972

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataactttaataaaataatg	Protospacer
***********************************.

56. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

57. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448679 (Streptococcus phage Javan137, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

58. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

59. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

60. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

61. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 1, identity: 0.971

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgcaaaatcgatg	Protospacer
**********************************.

62. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

63. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

64. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

65. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

66. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

67. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

68. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

69. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

70. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

71. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

72. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

73. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

74. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

75. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

76. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

77. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

78. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

79. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

80. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

81. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.941

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

82. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 2, identity: 0.941

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gatttatcgattttttggaatatctagccgaatc	Protospacer
* **************.*****************

83. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 2, identity: 0.941

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gctttatcgattttttggaatatttagccgaatc	Protospacer
****************.******.**********

84. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 2, identity: 0.941

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatc	Protospacer
*************.**.*****************

85. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.941

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatc	Protospacer
*************.**.*****************

86. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.941

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatc	Protospacer
*************.**.*****************

87. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 2, identity: 0.939

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattga	Protospacer
****** ***********************.**

88. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 2, identity: 0.939

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattga	Protospacer
****** ***********************.**

89. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

90. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

91. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

92. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

93. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

94. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

95. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

96. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

97. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

98. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

99. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

100. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

101. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

102. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

103. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

104. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

105. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

106. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

107. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

108. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.943

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

109. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 2, identity: 0.943

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gatttatcgattttttggaatatctagccgaatct	Protospacer
* **************.******************

110. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 2, identity: 0.943

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gctttatcgattttttggaatatttagccgaatct	Protospacer
****************.******.***********

111. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 2, identity: 0.941

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgac	Protospacer
************************.********.

112. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 2, identity: 0.941

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgac	Protospacer
************************.********.

113. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 2, identity: 0.941

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgac	Protospacer
************************.********.

114. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 2, identity: 0.941

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgac	Protospacer
************************.********.

115. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 2, identity: 0.944

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataatg	Protospacer
*********************** ***********.

116. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 2, identity: 0.944

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgactttaataaaataatg	Protospacer
******************.****************.

117. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 2, identity: 0.944

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgataacttgaataaaataatg	Protospacer
*********************** ***********.

118. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 3, identity: 0.912

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gatttatcgattttttggaatatttagccgaatc	Protospacer
* **************.******.**********

119. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 3, identity: 0.912

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gatttatcgattttttggaatatttagccgaatc	Protospacer
* **************.******.**********

120. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 3, identity: 0.912

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gatttatcgattttttggaatatttagccgaatc	Protospacer
* **************.******.**********

121. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 3, identity: 0.912

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
gatttatcgattttttggaatatttagccgaatc	Protospacer
* **************.******.**********

122. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatca	Protospacer
*************.**.*****************

123. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatca	Protospacer
*************.**.*****************

124. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatca	Protospacer
*************.**.*****************

125. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gatttatcgattttttggaatatttagccgaatct	Protospacer
* **************.******.***********

126. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gatttatcgattttttggaatatttagccgaatct	Protospacer
* **************.******.***********

127. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gatttatcgattttttggaatatttagccgaatct	Protospacer
* **************.******.***********

128. spacer 2.7|1337644|35|NZ_CP028148|PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 3, identity: 0.914

gctttatcgattttttagaatatctagccgaatct	CRISPR spacer
gatttatcgattttttggaatatttagccgaatct	Protospacer
* **************.******.***********

129. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 3, identity: 0.912

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattgac	Protospacer
****** ***********************.**.

130. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 3, identity: 0.912

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattgac	Protospacer
****** ***********************.**.

131. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

132. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

133. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

134. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

135. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

136. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

137. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

138. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

139. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

140. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

141. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

142. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

143. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

144. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

145. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

146. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatg	Protospacer
******************.**** ***********.

147. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

148. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

149. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

150. spacer 2.10|1337576|36|NZ_CP028148|CRISPRCasFinder matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 3, identity: 0.917

ttgcaaaatttacgtgataactttaataaaataata	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataatt	Protospacer
******************.**** ***********

151. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 3, identity: 0.917

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gatttatcgattttttggaatatctagccgaatctg	Protospacer
* **************.******************.

152. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 3, identity: 0.917

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gctttatcgattttttggaatatttagccgaatctg	Protospacer
****************.******.***********.

153. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448848 (Streptococcus phage Javan126, complete genome) position: , mismatch: 3, identity: 0.914

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgacg	Protospacer
************************.********..

154. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448857 (Streptococcus phage Javan164, complete genome) position: , mismatch: 3, identity: 0.914

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgacg	Protospacer
************************.********..

155. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448677 (Streptococcus phage Javan133, complete genome) position: , mismatch: 3, identity: 0.914

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgacg	Protospacer
************************.********..

156. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 3, identity: 0.914

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactctatgtttccttttatctgtaaaatcgacg	Protospacer
************************.********..

157. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatcag	Protospacer
*************.**.***************** .

158. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatcag	Protospacer
*************.**.***************** .

159. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gctttatcgatttcttggaatatctagccgaatcag	Protospacer
*************.**.***************** .

160. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gatttatcgattttttggaatatttagccgaatctg	Protospacer
* **************.******.***********.

161. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gatttatcgattttttggaatatttagccgaatctg	Protospacer
* **************.******.***********.

162. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gatttatcgattttttggaatatttagccgaatctg	Protospacer
* **************.******.***********.

163. spacer 2.11|1337643|36|NZ_CP028148|CRISPRCasFinder matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 4, identity: 0.889

gctttatcgattttttagaatatctagccgaatcta	CRISPR spacer
gatttatcgattttttggaatatttagccgaatctg	Protospacer
* **************.******.***********.

164. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 4, identity: 0.886

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattgacg	Protospacer
****** ***********************.**..

165. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MK448682 (Streptococcus phage Javan143, complete genome) position: , mismatch: 4, identity: 0.886

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gaactcgatgtttccttttatctgcaaaattgacg	Protospacer
****** ***********************.**..

166. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 6, identity: 0.829

gaactctatgtttccttttatctgcaaaatcgata-	CRISPR spacer
cttctctatgtttgcttttatctgctaaatc-atat	Protospacer
   ********** *********** ***** ***

167. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 7, identity: 0.788

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
cttctctatgtttgcttttatctgctaaatcat	Protospacer
   ********** *********** *****.

168. spacer 3.6|1745657|30|NZ_CP028148|CRT matches to KM659089 (Pseudomonas sp. LM12 plasmid pLM12P1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcctgcttcgccttctgggctcttttct	CRISPR spacer
tcgcctgcttcgccttcccggctctgctgg	Protospacer
* ***************. ****** .*

169. spacer 3.7|1745705|36|NZ_CP028148|CRT matches to MN694312 (Marine virus AFVG_250M269, complete genome) position: , mismatch: 7, identity: 0.806

ttgcctgcttcaccttgtgggccttgtgcgcccgtt	CRISPR spacer
attgaggcttcaccttgtgggccttgtgcgcctgta	Protospacer
 *    **************************.**

170. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.765

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttagatatgttacgtgatcactttaagaaaatag	Protospacer
**. * *  ********* ******* ******.

171. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 8, identity: 0.765

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
cttctctatgtttgcttttatctgctaaatcata	Protospacer
   ********** *********** *****.

172. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to NC_015054 (Yersinia pestis Java 9 plasmid pJARS35, complete sequence) position: , mismatch: 9, identity: 0.735

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
aatttattgattttttaaaatatctatctgtaat	Protospacer
. *****.*********.******** *.* * .

173. spacer 2.4|1337710|33|NZ_CP028148|CRT matches to MG592466 (Vibrio phage 1.091.O._10N.286.52.B12, partial genome) position: , mismatch: 9, identity: 0.727

gaactctatgtttccttttatctgcaaaatcga	CRISPR spacer
gtgatggcggttttcttttatctgcaaaaccga	Protospacer
* . *    ****.***************.***

174. spacer 2.8|1337711|34|NZ_CP028148|PILER-CR matches to MG592466 (Vibrio phage 1.091.O._10N.286.52.B12, partial genome) position: , mismatch: 9, identity: 0.735

gaactctatgtttccttttatctgcaaaatcgat	CRISPR spacer
gtgatggcggttttcttttatctgcaaaaccgat	Protospacer
* . *    ****.***************.****

175. spacer 3.7|1745705|36|NZ_CP028148|CRT matches to MN850565 (Escherichia phage ukendt, complete genome) position: , mismatch: 9, identity: 0.75

ttgcctgcttcaccttgtgggccttgtgcgcccgtt	CRISPR spacer
ttacctgcctcaccttgtgggccttgaggaccaaca	Protospacer
**.*****.***************** * .** ..

176. spacer 3.7|1745705|36|NZ_CP028148|CRT matches to AP014301 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C84, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.75

ttgcctgcttcaccttgtgggccttgtgcgcccgtt	CRISPR spacer
gcaccagtagcaccttgtggtccttgtgcgcctgtt	Protospacer
 ..** *.  ********** ***********.***

177. spacer 2.12|1337710|35|NZ_CP028148|CRISPRCasFinder matches to MG592466 (Vibrio phage 1.091.O._10N.286.52.B12, partial genome) position: , mismatch: 10, identity: 0.714

gaactctatgtttccttttatctgcaaaatcgata	CRISPR spacer
gtgatggcggttttcttttatctgcaaaaccgatg	Protospacer
* . *    ****.***************.****.

178. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 11, identity: 0.676

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
attatatagatttattagaatatctagctcttgt	Protospacer
..* *** ***** **************.    .

179. spacer 2.3|1337643|34|NZ_CP028148|CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

gctttatcgattttttagaatatctagccgaatc	CRISPR spacer
attatatagatttattagaatatctagctcttgt	Protospacer
..* *** ***** **************.    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36317 : 48630

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002987703.1\|36317_40043_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.1e-38	26.3
WP_002987705.1\|40203_41658_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.3e-54	32.5
WP_002987707.1\|41685_42708_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	4.0e-63	41.8
WP_002987709.1\|42875_43430_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.8e-25	35.6
WP_002987711.1\|43613_45161_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	3.4e-45	52.4
WP_002987712.1\|45218_46343_-	CHAP domain-containing protein	F8HGP2	Streptococcus_phage	7.7e-07	28.6
WP_002987714.1\|46595_47861_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_002987716.1\|48138_48630_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.2e-18	42.3

DBSCAN-SWA_2

342165 : 348200

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002990917.1\|342165_342801_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.7e-65	63.4
WP_002990914.1\|342818_343694_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	1.0e-62	43.8
WP_002985838.1\|344357_344681_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.3e-28	59.4
WP_002990904.1\|344685_345549_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.5e-114	74.7
WP_002985833.1\|345575_345968_+	hypothetical protein	NA	NA	NA	NA
WP_002990900.1\|346014_346644_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_002990897.1\|346942_347299_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.1e-39	65.0
WP_002990895.1\|347372_348200_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	2.9e-128	79.5

DBSCAN-SWA_3

515649 : 570831

Temperate_phage(42.31%)

capsid,portal,tRNA,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002990506.1\|515649_516774_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_096466706.1\|516842_517940_+	peptide chain release factor 2	NA	NA	NA	NA
WP_002985455.1\|517959_518652_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.0e-30	35.6
WP_010922049.1\|518635_519574_+	ABC transporter permease	NA	NA	NA	NA
WP_011527531.1\|519882_520581_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	3.6e-79	62.9
WP_026031988.1\|520748_521510_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_002990493.1\|521617_524119_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	1.5e-204	48.2
WP_002990490.1\|524453_525647_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_002990488.1\|525667_527014_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	8.2e-56	30.8
WP_002990487.1\|527428_528319_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.3e-06	29.7
WP_002985431.1\|528315_529293_+	YvcK family protein	A1IMD5	Streptococcus_phage	2.1e-138	74.2
WP_002990485.1\|529289_530201_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.9e-105	64.4
WP_010922052.1\|530377_531793_-	recombinase family protein	A5GZ62	Lactococcus_phage	2.3e-109	47.0
WP_010922053.1\|531913_532279_-	hypothetical protein	Q9T1Z1	Lactococcus_phage	2.8e-19	67.2
WP_010922054.1\|532305_533067_-	helix-turn-helix transcriptional regulator	X2KUB8	Streptococcus_phage	1.4e-39	40.2
WP_010922055.1\|533250_533481_+	helix-turn-helix transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	2.3e-19	63.2
WP_010922056.1\|533549_533687_+	hypothetical protein	NA	NA	NA	NA
WP_010922057.1\|533688_533814_+	hypothetical protein	A0A097PAR2	Streptococcus_pyogenes_phage	1.5e-09	80.0
WP_010922058.1\|533810_534038_+	hypothetical protein	NA	NA	NA	NA
WP_010922059.1\|534037_535357_+	AAA family ATPase	A0A097BY67	Enterococcus_phage	1.1e-150	63.6
WP_010922060.1\|535371_536463_+	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	1.0e-96	52.0
WP_010922061.1\|536502_536925_+	hypothetical protein	M1I9V9	Streptococcus_phage	4.2e-35	59.9
WP_010922062.1\|536926_537661_+	hypothetical protein	Q0R597	Streptococcus_phage	3.9e-76	60.9
WP_010922063.1\|537682_538318_+	hypothetical protein	A0A097BY29	Enterococcus_phage	4.3e-31	46.7
WP_010922064.1\|538317_539901_+	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	1.3e-233	77.4
WP_010922065.1\|539910_540540_+	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	9.1e-42	43.1
WP_010922066.1\|540529_542803_+	AAA family ATPase	Q5YA88	Bacillus_phage	3.8e-279	64.2
WP_010922067.1\|543080_543299_+	hypothetical protein	A0A1S5SEA6	Streptococcus_phage	1.3e-16	64.3
WP_010922068.1\|543291_543687_+	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	9.4e-45	65.6
WP_010922069.1\|543683_543905_+	hypothetical protein	NA	NA	NA	NA
WP_019418812.1\|543907_544180_+	hypothetical protein	A7J287	Streptococcus_phage	3.0e-18	60.0
WP_011017571.1\|544183_544666_+	class I SAM-dependent methyltransferase	A0A097PAU8	Streptococcus_pyogenes_phage	9.6e-92	98.8
WP_011017572.1\|544631_545420_+	site-specific DNA-methyltransferase	A0A1S5SE41	Streptococcus_phage	5.7e-134	92.3
WP_010922071.1\|545749_546184_+	ArpU family transcriptional regulator	J7KDQ1	Streptococcus_phage	4.5e-72	95.8
WP_019418850.1\|546493_547660_+	ParB N-terminal domain-containing protein	Q708N6	Streptococcus_phage	7.9e-124	53.9
WP_010922073.1\|548002_548479_+	hypothetical protein	Q938L4	Temperate_phage	4.9e-48	68.4
WP_010922074.1\|548561_549773_+\|terminase	PBSX family phage terminase large subunit	Q938L3	Temperate_phage	3.7e-225	99.7
WP_010922075.1\|549786_551289_+\|portal	phage portal protein	Q938L2	Temperate_phage	5.9e-281	99.6
WP_010922076.1\|551293_552787_+\|capsid	phage capsid protein	Q938L1	Temperate_phage	2.1e-214	80.8
WP_010922077.1\|552786_553014_+	hypothetical protein	NA	NA	NA	NA
WP_010922078.1\|553100_553367_+	hypothetical protein	Q938K9	Temperate_phage	8.3e-37	95.5
WP_010922079.1\|553492_554107_+	hypothetical protein	Q938K8	Temperate_phage	3.1e-95	95.0
WP_010922080.1\|554110_554929_+\|capsid	N4-gp56 family major capsid protein	Q79S85	Temperate_phage	4.0e-146	100.0
WP_010922081.1\|554982_555399_+	hypothetical protein	Q938K7	Temperate_phage	4.3e-56	99.1
WP_010922082.1\|555388_555721_+	hypothetical protein	Q79S86	Temperate_phage	9.6e-59	100.0
WP_010922083.1\|555720_556077_+	hypothetical protein	Q79S88	Temperate_phage	4.5e-62	100.0
WP_010922084.1\|556073_556472_+\|capsid	phage capsid protein	Q79S87	Temperate_phage	3.5e-71	100.0
WP_011054741.1\|556471_556957_+	hypothetical protein	Q938K6	Temperate_phage	1.6e-86	100.0
WP_010922086.1\|556995_557430_+	hypothetical protein	Q938K5	Temperate_phage	2.9e-71	99.3
WP_010922087.1\|557433_558015_+	hypothetical protein	Q938K4	Temperate_phage	1.6e-104	98.4
WP_019418848.1\|558004_561265_+	tape measure protein	Q938K3	Temperate_phage	0.0e+00	96.4
WP_010922089.1\|561261_561978_+	hypothetical protein	Q938K2	Temperate_phage	1.9e-136	99.2
WP_107114769.1\|561974_564119_+	peptidase	Q938K1	Temperate_phage	0.0e+00	95.1
WP_019418866.1\|564115_565141_+	hyaluronoglucosaminidase	Q938K0	Temperate_phage	9.0e-172	93.2
WP_107114770.1\|565153_567169_+	hyaluronidase	Q938J9	Temperate_phage	2.6e-183	72.8
WP_032461846.1\|567180_567612_+	DUF1617 family protein	Q938J8	Temperate_phage	8.9e-73	98.6
WP_032462176.1\|567614_568232_+	DUF1366 domain-containing protein	Q938J7	Temperate_phage	2.7e-78	89.8
WP_002986916.1\|568241_568514_+	hypothetical protein	A7J2B2	Streptococcus_phage	7.2e-36	91.0
WP_000609113.1\|568510_568738_+\|holin	phage holin	A7J2B3	Streptococcus_phage	5.8e-31	98.7
WP_010922095.1\|568853_570056_+	CHAP domain-containing protein	Q938J4	Temperate_phage	1.8e-232	95.8
WP_002988478.1\|570123_570831_-	streptococcal pyrogenic exotoxin SpeC	A0A097PAT7	Streptococcus_pyogenes_phage	1.4e-09	27.5

DBSCAN-SWA_4

662261 : 672864

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024623374.1\|662261_664472_-	LTA synthase family protein	W6LM83	Streptococcus_phage	2.5e-267	68.8
WP_002985142.1\|664579_665743_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.4e-143	65.1
WP_002985140.1\|665739_666426_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
WP_002990262.1\|666519_667686_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
WP_002990260.1\|667746_668088_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	2.6e-19	41.1
WP_002990258.1\|668308_669661_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	5.9e-30	24.0
WP_002990257.1\|669748_671017_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_002990255.1\|671046_671487_-	hypothetical protein	NA	NA	NA	NA
WP_002990253.1\|671721_672864_+	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	7.7e-23	27.5

DBSCAN-SWA_5

764290 : 816999

Streptococcus_phage(42.31%)

tail,integrase,head,portal,tRNA,terminase

attL 778589:778637|attR 818096:818144

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002990117.1\|764290_765190_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_002990116.1\|765262_766501_+	GTPase HflX	NA	NA	NA	NA
WP_002990114.1\|766493_767129_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_002984894.1\|767143_768073_+	ribonuclease Z	NA	NA	NA	NA
WP_002990111.1\|768072_768837_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002990110.1\|768833_771044_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.9e-71	30.2
WP_002990109.1\|771194_771713_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	42.4
WP_002984890.1\|771793_772477_+	DnaD domain-containing protein	Q938N2	Temperate_phage	2.9e-09	36.8
WP_002990106.1\|772473_773130_+	endonuclease III	NA	NA	NA	NA
WP_002990104.1\|773201_773888_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_002984887.1\|773877_774666_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_002990103.1\|774700_775807_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_002990101.1\|775864_776734_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.7e-100	64.2
WP_002990099.1\|776733_777327_+	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	3.7e-08	28.2
WP_002990096.1\|777570_778611_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.5e-68	43.9
778589:778637	attL	NA	NA	NA	NA
WP_002990094.1\|778704_779844_-\|integrase	site-specific integrase	A1EAB7	Streptococcus_phage	3.4e-119	56.3
WP_002990092.1\|779979_780660_-	hypothetical protein	A0A097PAS7	Streptococcus_pyogenes_phage	4.7e-76	88.3
WP_002990090.1\|780697_781453_-	helix-turn-helix domain-containing protein	A0A097PBE5	Streptococcus_pyogenes_phage	2.2e-82	64.5
WP_002990088.1\|781612_781840_+	hypothetical protein	A0A141E1R7	Streptococcus_phage	4.5e-15	60.0
WP_002990086.1\|781890_782616_+	oxidoreductase	A0A141E1D3	Streptococcus_phage	1.8e-94	72.4
WP_010922204.1\|782647_782914_+	hypothetical protein	A0A1S5SC19	Streptococcus_phage	1.1e-23	66.3
WP_002990083.1\|782848_783655_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	2.3e-122	81.7
WP_002990081.1\|783796_784033_-	hypothetical protein	NA	NA	NA	NA
WP_002990080.1\|784175_784487_+	hypothetical protein	A0A1S5SA25	Streptococcus_phage	4.1e-43	78.4
WP_002990078.1\|784488_784674_+	hypothetical protein	Q938N3	Temperate_phage	1.2e-21	90.2
WP_002990076.1\|785171_785558_+	DnaD domain-containing protein	Q938N2	Temperate_phage	1.1e-24	47.3
WP_002988350.1\|785538_785772_+	hypothetical protein	Q938N1	Temperate_phage	1.8e-35	94.8
WP_002988354.1\|785768_785909_+	hypothetical protein	A0A1X9I6Y1	Streptococcus_phage	3.4e-05	54.5
WP_002990074.1\|785917_786124_+	hypothetical protein	NA	NA	NA	NA
WP_002988359.1\|786179_786509_+	hypothetical protein	J7KGX3	Streptococcus_phage	2.1e-45	83.5
WP_002990071.1\|786511_787303_+	phage recombination protein Bet	A0A1S5SFP4	Streptococcus_phage	1.4e-119	82.0
WP_002990069.1\|787312_788341_+	DUF1351 domain-containing protein	E8ZD61	Streptococcus_phage	7.2e-121	65.6
WP_002990067.1\|788536_788875_+	hypothetical protein	M1PKX3	Streptococcus_phage	4.0e-12	37.5
WP_002990064.1\|788871_789384_+	hypothetical protein	Q708P9	Streptococcus_phage	2.9e-62	73.2
WP_002990061.1\|789370_789565_+	hypothetical protein	A3F626	Streptococcus_phage	9.7e-11	86.5
WP_002990058.1\|789561_789807_+	hypothetical protein	A0A1P8VVL2	Streptococcus_phage	4.5e-21	92.5
WP_002990055.1\|789858_790320_+	DUF1642 domain-containing protein	A0A097PAV5	Streptococcus_pyogenes_phage	4.5e-46	60.1
WP_002990052.1\|790770_791211_+	ArpU family transcriptional regulator	Q938L8	Temperate_phage	4.2e-78	98.6
WP_002990050.1\|791525_792440_+	hypothetical protein	NA	NA	NA	NA
WP_010922211.1\|792458_792920_+	hypothetical protein	NA	NA	NA	NA
WP_002990047.1\|792947_793430_+\|terminase	terminase small subunit	E0Y3R8	Staphylococcus_virus	3.3e-15	40.3
WP_002988380.1\|793407_794697_+\|terminase	PBSX family phage terminase large subunit	A0A2H4IYR5	uncultured_Caudovirales_phage	1.5e-184	74.9
WP_002988384.1\|794708_796211_+\|portal	phage portal protein	C9W9H5	Streptococcus_virus	1.6e-140	54.5
WP_002988386.1\|796191_797754_+\|head	phage head morphogenesis protein	U6E9F1	Streptococcus_phage	1.6e-47	44.2
WP_002988389.1\|797757_797943_+	hypothetical protein	NA	NA	NA	NA
WP_002988396.1\|798328_798595_+	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	1.7e-26	72.7
WP_002990039.1\|798738_799272_+	DUF4355 domain-containing protein	A0A141E0S7	Streptococcus_phage	1.8e-14	82.5
WP_002990036.1\|799281_799662_+	structural protein	A0A0K2CNR0	Brevibacillus_phage	6.4e-06	36.3
WP_002990034.1\|799664_800714_+	hypothetical protein	B0YL60	Streptococcus_virus	2.6e-105	56.9
WP_002990031.1\|800725_800992_+	hypothetical protein	NA	NA	NA	NA
WP_002990030.1\|801003_801357_+	hypothetical protein	A0A2H4J002	uncultured_Caudovirales_phage	7.4e-25	49.6
WP_002990028.1\|801353_801662_+	hypothetical protein	A0A2P1JTW8	Anoxybacillus_phage	5.7e-13	40.2
WP_002984399.1\|801642_802008_+	HK97 gp10 family phage protein	A0A097BY98	Enterococcus_phage	7.7e-17	46.3
WP_002990026.1\|802004_802394_+	hypothetical protein	Q38611	Lactococcus_phage	1.6e-44	69.0
WP_010922221.1\|802490_803057_+\|tail	phage major tail protein, TP901-1 family	D7RWD5	Brochothrix_phage	5.7e-43	53.3
WP_002990023.1\|803116_803470_+	hypothetical protein	Q77RZ7	Lactococcus_phage	5.5e-20	48.6
WP_002988428.1\|803511_803841_+	hypothetical protein	A0A1P8BLR3	Lactococcus_phage	5.7e-11	40.6
WP_010922222.1\|803855_807491_+	tape measure protein	U6E979	Streptococcus_phage	4.0e-04	28.0
WP_002988434.1\|807523_808303_+	hypothetical protein	A3F655	Streptococcus_phage	9.2e-68	55.6
WP_002990019.1\|808299_810351_+	hypothetical protein	A3F656	Streptococcus_phage	0.0e+00	83.8
WP_002990017.1\|810347_811469_+	hyaluronoglucosaminidase	A7J2A8	Streptococcus_phage	1.9e-127	73.3
WP_107114773.1\|811481_813395_+	hyaluronidase	A7J2A9	Streptococcus_phage	2.0e-100	67.0
WP_002987333.1\|813408_813570_+	hypothetical protein	NA	NA	NA	NA
WP_002990014.1\|813572_814184_+	DUF1366 domain-containing protein	Q938J7	Temperate_phage	5.7e-81	91.1
WP_002990012.1\|814194_814491_+	hypothetical protein	Q938J6	Temperate_phage	3.7e-46	98.0
WP_002990010.1\|814487_814673_+	hypothetical protein	Q938J5	Temperate_phage	1.9e-24	95.1
WP_044565069.1\|814758_816048_+	lysin	Q5MY96	Streptococcus_phage	2.6e-237	92.7
WP_047373492.1\|816321_816999_+	streptococcal pyrogenic exotoxin SpeI	A0A075M4C7	Staphylococcus_phage	2.4e-27	32.4
818096:818144	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1101008 : 1125911

Streptococcus_phage(82.61%)

transposase,integrase

attL 1090524:1090540|attR 1128674:1128690

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1090524:1090540	attL	NA	NA	NA	NA
WP_006269672.1\|1101008_1102742_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-35	27.5
WP_002989485.1\|1102735_1104481_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.7e-35	26.5
WP_001291561.1\|1105537_1106755_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|1106836_1107040_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001845478.1\|1107023_1107275_+	hypothetical protein	NA	NA	NA	NA
WP_000857133.1\|1107500_1107731_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804885.1\|1107727_1108150_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_013670292.1\|1108378_1108450_-	hypothetical protein	NA	NA	NA	NA
WP_001227347.1\|1108654_1109008_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_011058338.1\|1109067_1109253_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
WP_019418832.1\|1109353_1111273_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A2K5B2A5	Erysipelothrix_phage	0.0e+00	99.8
WP_012386611.1\|1111288_1111375_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224320.1\|1111649_1112585_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.7e-170	99.0
WP_000769868.1\|1112581_1113583_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|1113579_1115757_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_019418831.1\|1115759_1118207_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	99.5
WP_000506270.1\|1118190_1118697_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|1118671_1119169_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|1119285_1119507_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000019067.1\|1119686_1120934_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	3.9e-12	23.9
WP_000085862.1\|1121054_1121186_-	hypothetical protein	E4ZFP9	Streptococcus_phage	7.9e-17	100.0
WP_001038795.1\|1121190_1121928_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	3.1e-134	99.2
WP_001814874.1\|1122052_1122136_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001815707.1\|1122184_1123603_-	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.5e-233	100.0
WP_000879507.1\|1123625_1123778_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|1123780_1125166_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|1125194_1125581_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|1125596_1125911_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
1128674:1128690	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1192797 : 1279402

Streptococcus_phage(57.81%)

tail,integrase,head,capsid,portal,tRNA,holin,protease,terminase

attL 1233887:1233906|attR 1276787:1276806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002989227.1\|1192797_1193493_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002989223.1\|1193511_1194273_-	DUF3169 family protein	NA	NA	NA	NA
WP_002989220.1\|1194269_1194485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002989217.1\|1194844_1197463_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-61	33.9
WP_002984003.1\|1197849_1198905_-	peptidylprolyl isomerase PrsA	NA	NA	NA	NA
WP_002989211.1\|1198967_1199675_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.6e-08	27.2
WP_002989208.1\|1199740_1200937_-	OFA family MFS transporter	NA	NA	NA	NA
WP_002989205.1\|1201312_1203118_-	oligoendopeptidase F	NA	NA	NA	NA
WP_002989200.1\|1203130_1204093_-	competence protein CoiA	NA	NA	NA	NA
WP_002989197.1\|1204387_1205104_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_002989194.1\|1205222_1205927_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_002989192.1\|1206128_1207157_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002989189.1\|1207163_1208384_+	DUF3114 domain-containing protein	NA	NA	NA	NA
WP_002989185.1\|1208497_1209088_-	hypothetical protein	NA	NA	NA	NA
WP_026031994.1\|1209084_1209333_-	hypothetical protein	NA	NA	NA	NA
WP_002983977.1\|1209710_1210316_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-58	53.2
WP_002989176.1\|1210412_1211453_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_002989173.1\|1211523_1213767_-	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.8e-55	59.2
WP_002983967.1\|1213747_1214410_-	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_011527678.1\|1214609_1215428_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_023612510.1\|1215467_1216244_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002989164.1\|1216233_1216512_+	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	1.8e-05	36.0
WP_002994363.1\|1216535_1218536_-	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	1.3e-65	34.0
WP_002989158.1\|1218662_1220282_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.9e-59	36.5
WP_002989155.1\|1220588_1222133_-	peptide chain release factor 3	A0A1B0RXH7	Streptococcus_phage	1.1e-35	29.1
WP_002989150.1\|1222380_1223076_-	TIGR02206 family membrane protein	NA	NA	NA	NA
WP_002989148.1\|1223156_1224548_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002989146.1\|1224746_1225793_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002989144.1\|1225893_1226490_-	recombination protein RecR	NA	NA	NA	NA
WP_011527680.1\|1226536_1226719_-	penicillin-binding protein	NA	NA	NA	NA
WP_002989141.1\|1227277_1228057_-	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_002989140.1\|1228180_1228723_-	hypothetical protein	NA	NA	NA	NA
WP_002983930.1\|1228883_1229405_-	transcription repressor NadR	NA	NA	NA	NA
WP_002983928.1\|1229512_1230208_-	phosphoglycerate mutase	NA	NA	NA	NA
WP_002989136.1\|1230446_1231382_+	dihydroorotate oxidase	A0A1V0SH91	Hokovirus	4.6e-66	45.1
WP_002989131.1\|1231681_1233544_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-90	34.0
1233887:1233906	attL	NA	NA	NA	NA
WP_011528776.1\|1234075_1234258_-	hypothetical protein	A3F673	Streptococcus_phage	5.3e-19	75.0
WP_002988472.1\|1234370_1235153_-	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	4.3e-49	45.8
WP_002988467.1\|1235400_1236525_-	Fic family protein	D7RWK9	Brochothrix_phage	3.1e-93	49.1
WP_011528778.1\|1236660_1237878_-\|holin	holin	A0A1P8VVM5	Streptococcus_phage	1.4e-163	60.1
WP_003058873.1\|1237996_1238224_-\|holin	phage holin	A7J2B3	Streptococcus_phage	2.0e-31	100.0
WP_019418840.1\|1238220_1238493_-	hypothetical protein	A7J2B2	Streptococcus_phage	3.2e-36	92.1
WP_011017592.1\|1238502_1239120_-	DUF1366 domain-containing protein	Q938J7	Temperate_phage	5.0e-77	89.3
WP_002983467.1\|1239122_1239554_-	DUF1617 family protein	Q938J8	Temperate_phage	1.3e-63	89.5
WP_038433819.1\|1239565_1241476_-	phage hyaluronidase	Q938J9	Temperate_phage	4.0e-189	76.6
WP_002988442.1\|1241486_1242122_-	hypothetical protein	A0A097PBF7	Streptococcus_pyogenes_phage	2.2e-75	67.6
WP_002988439.1\|1242121_1243177_-	hypothetical protein	A3F657	Streptococcus_phage	1.2e-126	73.2
WP_038433820.1\|1243173_1245321_-	peptidase	Q938K1	Temperate_phage	0.0e+00	93.4
WP_011527559.1\|1245317_1246025_-	hypothetical protein	Q938K2	Temperate_phage	6.8e-94	71.9
WP_011527558.1\|1246024_1249948_-\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.9e-238	48.5
WP_011017586.1\|1250157_1250484_-	hypothetical protein	J7KK85	Streptococcus_phage	8.3e-39	75.0
WP_011017585.1\|1250536_1251145_-	hypothetical protein	J7KKC8	Streptococcus_phage	6.7e-74	71.9
WP_011017584.1\|1251160_1251586_-	hypothetical protein	J7KBZ9	Streptococcus_phage	7.2e-67	84.4
WP_011527557.1\|1251582_1251960_-	HK97 gp10 family phage protein	J7KDM3	Streptococcus_phage	1.8e-45	72.8
WP_011017582.1\|1251956_1252304_-\|head	phage head closure protein	J7KJ42	Streptococcus_phage	2.9e-50	88.2
WP_011017581.1\|1252300_1252603_-	hypothetical protein	J7KC36	Streptococcus_phage	1.3e-41	88.8
WP_011017580.1\|1252747_1253935_-\|capsid	phage major capsid protein	J7KJ82	Streptococcus_phage	1.3e-158	74.7
WP_011017579.1\|1253959_1254625_-\|protease	Clp protease ClpP	M1Q115	Streptococcus_phage	3.5e-92	78.1
WP_011017578.1\|1254602_1255823_-\|portal	phage portal protein	J7KDU3	Streptococcus_phage	6.9e-187	81.9
WP_002985363.1\|1255856_1256081_-	hypothetical protein	Q938K9	Temperate_phage	3.6e-17	61.4
WP_024623442.1\|1256240_1257995_-	amino acid transporter	J7KKD1	Streptococcus_phage	0.0e+00	96.1
WP_002985368.1\|1257998_1258229_-	hypothetical protein	NA	NA	NA	NA
WP_002985371.1\|1258231_1258699_-\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	3.9e-82	98.7
WP_001132273.1\|1259442_1259628_+	addiction module toxin, HicA family	D6PSW1	Lactobacillus_phage	1.7e-09	54.0
WP_002987543.1\|1259679_1260057_+	HicB family protein	I3NLB2	Bifidobacterium_phage	3.3e-15	44.0
WP_019418843.1\|1260183_1261149_-	hypothetical protein	A0A126HDT5	Lactococcus_phage	4.7e-98	60.6
WP_011017574.1\|1261731_1262169_-	DUF1492 domain-containing protein	A0A097PBF1	Streptococcus_pyogenes_phage	6.7e-76	97.9
WP_011017573.1\|1262611_1263337_-	DUF1642 domain-containing protein	Q938L9	Temperate_phage	3.1e-25	44.8
WP_011017572.1\|1263384_1264173_-	site-specific DNA-methyltransferase	A0A1S5SE41	Streptococcus_phage	5.7e-134	92.3
WP_011017571.1\|1264138_1264621_-	class I SAM-dependent methyltransferase	A0A097PAU8	Streptococcus_pyogenes_phage	9.6e-92	98.8
WP_011017570.1\|1264624_1264909_-	hypothetical protein	A3F628	Streptococcus_phage	4.6e-33	79.8
WP_011017569.1\|1264905_1265319_-	hypothetical protein	Q938M1	Temperate_phage	6.4e-36	65.2
WP_002987593.1\|1265328_1265598_-	hypothetical protein	A0A1P8VVR6	Streptococcus_phage	3.1e-47	100.0
WP_011527551.1\|1265594_1265780_-	hypothetical protein	A3F626	Streptococcus_phage	1.7e-12	94.7
WP_011527550.1\|1265772_1266054_-	DUF1599 domain-containing protein	J7KDH9	Streptococcus_phage	2.5e-31	75.0
WP_011527549.1\|1266178_1266535_-	hypothetical protein	A0A1P8VVP9	Streptococcus_phage	7.7e-54	87.3
WP_011527548.1\|1266518_1266839_-	VRR-NUC domain-containing protein	A0A1P8VVL5	Streptococcus_phage	1.9e-51	95.3
WP_011527547.1\|1266835_1267249_-	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.6e-15	51.1
WP_107114778.1\|1267510_1268986_-	DNA primase	A0A1P8VVM0	Streptococcus_phage	7.0e-242	84.0
WP_011527545.1\|1268975_1269788_-	hypothetical protein	J7KH42	Streptococcus_phage	1.9e-153	97.4
WP_011527544.1\|1269790_1270249_-	DUF669 domain-containing protein	A0A1P8VVN0	Streptococcus_phage	2.2e-77	94.1
WP_107114779.1\|1270264_1271500_-	DEAD/DEAH box helicase	J7KK96	Streptococcus_phage	2.8e-228	95.1
WP_011527542.1\|1271595_1272288_-	AAA family ATPase	J7KC09	Streptococcus_phage	5.9e-127	96.1
WP_011527541.1\|1272274_1272586_-	hypothetical protein	A0A1S5PRW6	Streptococcus_phage	8.0e-23	48.5
WP_008087492.1\|1272695_1272878_-	hypothetical protein	A0A2P0ZLA4	Lactobacillus_phage	4.0e-06	43.8
WP_011527540.1\|1272865_1273078_-	hypothetical protein	NA	NA	NA	NA
WP_011527538.1\|1273224_1273470_-	hypothetical protein	NA	NA	NA	NA
WP_010922479.1\|1273734_1273947_-	helix-turn-helix transcriptional regulator	A0A1X9I583	Streptococcus_phage	1.1e-10	56.7
WP_010922480.1\|1274148_1274904_+	helix-turn-helix transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	2.8e-77	60.8
WP_011528799.1\|1274915_1275434_+	restriction endonuclease	E8ZDN5	Streptococcus_phage	1.6e-31	45.9
WP_003051793.1\|1275557_1276700_+\|integrase	site-specific integrase	M1NRJ9	Streptococcus_phage	2.4e-173	77.4
WP_002983920.1\|1276788_1277064_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.6e-25	73.0
1276787:1276806	attR	NA	NA	NA	NA
WP_002989129.1\|1277162_1277750_-	YpmS family protein	NA	NA	NA	NA
WP_002989127.1\|1277727_1278588_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_002989125.1\|1278562_1279402_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.0e-13	35.7

DBSCAN-SWA_8

1483061 : 1527145

Streptococcus_phage(80.85%)

tail,integrase,head,portal,tRNA,terminase

attL 1482924:1482940|attR 1523741:1523757

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1482924:1482940	attL	NA	NA	NA	NA
WP_002988813.1\|1483061_1483241_-	hypothetical protein	A3F673	Streptococcus_phage	5.6e-21	83.1
WP_002988811.1\|1483479_1484652_+	streptodornase Sda1	A7J2B8	Streptococcus_phage	4.7e-76	49.8
WP_002988807.1\|1484767_1485964_-	streptodornase Sda1	Q938J4	Temperate_phage	6.1e-196	82.2
WP_002988802.1\|1486090_1486276_-	hypothetical protein	Q938J5	Temperate_phage	9.5e-24	93.4
WP_002988799.1\|1486272_1486572_-	hypothetical protein	Q938J6	Temperate_phage	3.5e-36	82.3
WP_002988797.1\|1486582_1487203_-	hypothetical protein	A3F662	Streptococcus_phage	8.3e-80	88.8
WP_002988795.1\|1487205_1487367_-	hypothetical protein	NA	NA	NA	NA
WP_038433824.1\|1487375_1489283_-	phage hyaluronidase	Q938J9	Temperate_phage	5.6e-135	63.5
WP_002988442.1\|1489293_1489929_-	hypothetical protein	A0A097PBF7	Streptococcus_pyogenes_phage	2.2e-75	67.6
WP_002988439.1\|1489928_1490984_-	hypothetical protein	A3F657	Streptococcus_phage	1.2e-126	73.2
WP_002988790.1\|1490980_1492963_-	peptidase	A7J2A7	Streptococcus_phage	0.0e+00	92.5
WP_002988788.1\|1492972_1493815_-	hypothetical protein	A7J2A6	Streptococcus_phage	8.5e-160	99.6
WP_002988786.1\|1493826_1498209_-	tape measure protein	A7J2A5	Streptococcus_phage	3.2e-226	76.4
WP_002983445.1\|1498223_1498457_-	hypothetical protein	A7J2A4	Streptococcus_phage	4.4e-34	100.0
WP_002983443.1\|1498531_1498987_-	hypothetical protein	A7J2A3	Streptococcus_phage	8.3e-77	100.0
WP_002988784.1\|1499040_1499640_-\|tail	phage major tail protein, TP901-1 family	A7J2A2	Streptococcus_phage	4.1e-92	98.9
WP_002988782.1\|1499651_1500011_-	hypothetical protein	A7J2A1	Streptococcus_phage	6.8e-58	97.5
WP_002988781.1\|1500014_1500359_-	hypothetical protein	A7J2A0	Streptococcus_phage	6.1e-56	99.1
WP_000639437.1\|1500355_1500634_-	hypothetical protein	A7J299	Streptococcus_phage	4.2e-47	98.9
WP_002988776.1\|1500644_1501001_-\|head,tail	phage head-tail connector protein	A7J298	Streptococcus_phage	2.8e-56	97.5
WP_002988771.1\|1501012_1501900_-	hypothetical protein	A7J297	Streptococcus_phage	3.6e-161	99.7
WP_002988768.1\|1501912_1502482_-	DUF4355 domain-containing protein	A7J296	Streptococcus_phage	2.6e-80	97.9
WP_002988765.1\|1502637_1502904_-	hypothetical protein	A0A097PAR8	Streptococcus_pyogenes_phage	1.7e-34	88.6
WP_002983423.1\|1502906_1503095_-	hypothetical protein	A7J294	Streptococcus_phage	1.4e-22	98.4
WP_015446273.1\|1503125_1504571_-	hypothetical protein	A7J293	Streptococcus_phage	3.4e-257	92.9
WP_002988758.1\|1504530_1506063_-\|portal	phage portal protein	A7J292	Streptococcus_phage	1.3e-286	98.2
WP_002988754.1\|1506078_1507356_-\|terminase	PBSX family phage terminase large subunit	A7J291	Streptococcus_phage	1.3e-241	97.6
WP_011106637.1\|1507345_1507798_-\|terminase	terminase small subunit	A7J290	Streptococcus_phage	6.9e-76	100.0
WP_002988747.1\|1507887_1508304_-	DUF722 domain-containing protein	A7J289	Streptococcus_phage	6.6e-73	100.0
WP_002988743.1\|1508300_1508492_-	hypothetical protein	NA	NA	NA	NA
WP_002988740.1\|1508481_1509333_-	site-specific DNA-methyltransferase	A0A1W6JMZ7	Lactococcus_phage	1.5e-100	71.9
WP_002988738.1\|1509341_1509608_-	hypothetical protein	A7J287	Streptococcus_phage	5.4e-20	65.2
WP_002988733.1\|1509772_1511095_-	DEAD/DEAH box helicase family protein	A7J284	Streptococcus_phage	1.9e-254	98.4
WP_002988730.1\|1511091_1511367_-	VRR-NUC domain-containing protein	A7J283	Streptococcus_phage	9.1e-47	100.0
WP_002988726.1\|1511753_1514138_-	DNA primase	A7J282	Streptococcus_phage	5.3e-276	94.4
WP_002988723.1\|1514142_1516065_-	DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	96.7
WP_002988718.1\|1516107_1516665_-	DUF2815 family protein	D2J040	Enterococcus_phage	2.5e-51	57.9
WP_002988715.1\|1516675_1517074_-	hypothetical protein	NA	NA	NA	NA
WP_002988711.1\|1517077_1518232_-	DUF2800 domain-containing protein	A7J278	Streptococcus_phage	4.5e-204	91.9
WP_002988708.1\|1518231_1518531_-	hypothetical protein	A7J277	Streptococcus_phage	1.8e-43	100.0
WP_002988705.1\|1518618_1518822_-	hypothetical protein	A7J276	Streptococcus_phage	2.3e-31	95.5
WP_002988700.1\|1518968_1519355_-	hypothetical protein	A7J274	Streptococcus_phage	3.1e-56	88.2
WP_002988697.1\|1519351_1519555_-	hypothetical protein	NA	NA	NA	NA
WP_002988693.1\|1519547_1519718_-	hypothetical protein	A7J273	Streptococcus_phage	6.9e-21	89.3
WP_002988687.1\|1519714_1519990_-	hypothetical protein	A7J272	Streptococcus_phage	5.9e-46	95.6
WP_002988684.1\|1520051_1520267_-	hypothetical protein	M1Q1B4	Streptococcus_phage	4.2e-23	76.8
WP_002988681.1\|1520314_1520728_+	hypothetical protein	NA	NA	NA	NA
WP_011285676.1\|1521138_1521540_+	helix-turn-helix transcriptional regulator	A7J269	Streptococcus_phage	1.1e-40	72.9
WP_002988673.1\|1521553_1521937_+	hypothetical protein	A7J268	Streptococcus_phage	5.3e-69	99.2
WP_002988670.1\|1521947_1522499_+	hypothetical protein	A7J267	Streptococcus_phage	3.4e-85	92.3
WP_002988667.1\|1522615_1523695_+\|integrase	site-specific integrase	A7J266	Streptococcus_phage	1.3e-176	86.9
WP_002983387.1\|1523892_1524528_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
1523741:1523757	attR	NA	NA	NA	NA
WP_002983385.1\|1524527_1525319_-	phosphotransferase family protein	NA	NA	NA	NA
WP_002988663.1\|1525382_1526417_-	ABC transporter permease	NA	NA	NA	NA
WP_002983379.1\|1526419_1527145_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.9e-20	28.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP028148.1|WP_011527680.1|1226536_1226719_-|penicillin-binding-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP028148.1|WP_011527680.1|1226536_1226719_-|penicillin-binding-protein

1226536_1226719_-

60 aa aa

1192797-1279402

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP028148_2	TypeI	2.2\|1337576\|34\|NZ_CP028148\|CRT	1337576-1337609	34	1264891-1264858	2
NZ_CP028148_2	TypeI	2.6\|1337577\|35\|NZ_CP028148\|PILER-CR	1337577-1337611	35	1264891-1264857	2

1. spacer 2.2|1337576|34|NZ_CP028148|CRT matches to NZ_CP028148 position: 1264891-1264858, mismatch: 2

ttgcaaaatttacgtgataactttaataaaataa	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataa	Protospacer
******************.**** **********

2. spacer 2.6|1337577|35|NZ_CP028148|PILER-CR matches to NZ_CP028148 position: 1264891-1264857, mismatch: 2

ttgcaaaatttacgtgataactttaataaaataat	CRISPR spacer
ttgcaaaatttacgtgatgacttgaataaaataat	Protospacer
******************.**** ***********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information