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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020467 Staphylococcus aureus strain CFSAN007896 chromosome, complete genome 9 crisprs csa3,cas3,DEDDh,DinG,WYL 4 0 10 0

Results visualization

1. NZ_CP020467
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_1 858307-858386 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_2 907427-907512 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_3 1208784-1208876 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_4 1974519-1974643 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_5 2019464-2019655 Orphan NA
3 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_6 2127744-2127832 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_7 2277570-2277771 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_8 2336104-2336229 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020467_9 2376111-2376191 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 1059537-1059567 1 0.968
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 1676595-1676625 1 0.968
NZ_CP020467_2 2.1|907457|26|NZ_CP020467|CRISPRCasFinder 907457-907482 26 NZ_CP020467.1 2151824-2151849 2 0.923
NZ_CP020467_2 2.1|907457|26|NZ_CP020467|CRISPRCasFinder 907457-907482 26 NZ_CP020467.1 2211908-2211933 2 0.923
NZ_CP020467_5 5.1|2019485|37|NZ_CP020467|CRT 2019485-2019521 37 NZ_CP020467.1 813195-813231 2 0.946
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 256033-256066 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 348015-348048 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 766822-766855 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 1059474-1059507 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 1796505-1796538 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 2376075-2376108 2 0.941
NZ_CP020467_5 5.2|2019543|34|NZ_CP020467|CRT 2019543-2019576 34 NZ_CP020467.1 2520028-2520061 2 0.941
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 813319-813349 2 0.935
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 862588-862618 2 0.935
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 907418-907448 2 0.935
NZ_CP020467_9 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder 2376136-2376166 31 NZ_CP020467.1 2008927-2008957 2 0.935

1. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 1059537-1059567, mismatch: 1, identity: 0.968

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**************************** **

2. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 1676595-1676625, mismatch: 1, identity: 0.968

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**************************** **

3. spacer 2.1|907457|26|NZ_CP020467|CRISPRCasFinder matches to position: 2151824-2151849, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

4. spacer 2.1|907457|26|NZ_CP020467|CRISPRCasFinder matches to position: 2211908-2211933, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

5. spacer 5.1|2019485|37|NZ_CP020467|CRT matches to position: 813195-813231, mismatch: 2, identity: 0.946

ccaacttgcacattattgtaagctgacagaaagtcag	CRISPR spacer
ccaacttgcacattattgtaagctggcggaaagtcag	Protospacer
*************************.*.*********

6. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 256033-256066, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaat	Protospacer
***********.************.*********

7. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 348015-348048, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaat	Protospacer
************.***********.*********

8. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 766822-766855, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaat	Protospacer
************.***********.*********

9. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 1059474-1059507, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaat	Protospacer
***********.************.*********

10. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 1796505-1796538, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

11. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 2376075-2376108, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

12. spacer 5.2|2019543|34|NZ_CP020467|CRT matches to position: 2520028-2520061, mismatch: 2, identity: 0.941

aacttgcattgtctgtagaatttcctttcgaaat	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaat	Protospacer
************************.***.*****

13. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 813319-813349, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgactttacgtcagct	Protospacer
********************** ***** **

14. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 862588-862618, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctggcttttcgtcagct	Protospacer
*****************.********** **

15. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 907418-907448, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattattgtaagctgacttttcgccagct	Protospacer
*************************.** **

16. spacer 9.1|2376136|31|NZ_CP020467|CRISPRCasFinder matches to position: 2008927-2008957, mismatch: 2, identity: 0.935

cacattattgtaagctgacttttcgtcacct	CRISPR spacer
cacattatcgtaagctgacttttcgtcagct	Protospacer
********.******************* **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 681901 : 699497 18 Staphylococcus_phage(50.0%) transposase,bacteriocin NA
DBSCAN-SWA_2 745203 : 753023 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 764995 : 779133 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 949029 : 996866 45 Bacillus_virus(25.0%) bacteriocin,tRNA,holin,transposase,protease NA
DBSCAN-SWA_5 1034787 : 1043260 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1505478 : 1590374 96 Staphylococcus_phage(75.71%) head,capsid,portal,plate,tRNA,holin,integrase,terminase,protease,tail attL 1515679:1515696|attR 1586432:1586449
DBSCAN-SWA_7 1648215 : 1656527 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1725963 : 1735006 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1864731 : 1933637 64 Staphylococcus_phage(93.02%) protease,tRNA NA
DBSCAN-SWA_10 2020144 : 2131804 137 Staphylococcus_phage(83.51%) head,capsid,terminase,portal,coat,tRNA,holin,integrase,transposase,protease,tail attL 2120617:2120633|attR 2131540:2131556
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage