CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017635	Vibrio vulnificus Env1 chromosome I, complete sequence	0 crisprs	csx1,cas3,DinG,WYL,PD-DExK,DEDDh,csa3	0	0	5	0
NZ_CP017636	Vibrio vulnificus Env1 chromosome II, complete sequence	0 crisprs	cas3,csa3,DEDDh,WYL	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

733440 : 774414

Acanthamoeba_polyphaga_moumouvirus(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038964128.1\|733440_734385_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080930960.1\|735057_735180_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103155300.1\|735195_735744_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_103155490.1\|736674_736803_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103155489.1\|736889_737804_+	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.0e-26	34.1
WP_103155491.1\|737806_737929_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_061051369.1\|737958_738432_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_038940638.1\|738590_739010_+	RDD domain-containing protein	NA	NA	NA	NA
WP_103154941.1\|739027_739129_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103154940.1\|739214_740684_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_072612521.1\|740715_740808_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_108064565.1\|741641_741770_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_080586428.1\|742113_742242_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_080584461.1\|742584_742707_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038939651.1\|742758_743055_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000557295.1\|743061_743304_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_038964128.1\|743916_744861_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_108064552.1\|745190_745553_-	glyoxalase	NA	NA	NA	NA
WP_103155479.1\|745668_745770_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103155480.1\|745796_746285_+	hypothetical protein	NA	NA	NA	NA
WP_103155481.1\|746878_747598_+	hypothetical protein	NA	NA	NA	NA
WP_103155482.1\|748540_748687_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_025549140.1\|748699_749068_+	VOC family protein	NA	NA	NA	NA
WP_058666904.1\|749695_750235_+	hypothetical protein	NA	NA	NA	NA
WP_078555065.1\|750239_750362_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_043037921.1\|750399_750633_+	hypothetical protein	NA	NA	NA	NA
WP_103154942.1\|750682_750784_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_157629959.1\|750984_751155_+	hypothetical protein	NA	NA	NA	NA
WP_017420735.1\|751864_752086_+	DUF2132 domain-containing protein	NA	NA	NA	NA
WP_103154522.1\|752095_752224_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_089529793.1\|752418_753952_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_072615096.1\|754214_754343_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038940878.1\|754371_754881_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_103155166.1\|755655_756567_+	hypothetical protein	NA	NA	NA	NA
WP_103155167.1\|756709_757735_+	hypothetical protein	NA	NA	NA	NA
WP_089529793.1\|757788_759323_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_146255322.1\|759411_759459_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103155483.1\|759536_759950_+	hypothetical protein	NA	NA	NA	NA
WP_072600879.1\|759912_760056_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_048901114.1\|760086_760608_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_061778615.1\|760729_761245_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_103155362.1\|761245_761362_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094868149.1\|761540_762203_+	hypothetical protein	NA	NA	NA	NA
WP_103155414.1\|762737_762860_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_095429906.1\|762894_763521_+	hypothetical protein	NA	NA	NA	NA
WP_038964128.1\|763561_764506_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_108064566.1\|765184_765313_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103155478.1\|765655_765784_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_086467572.1\|766273_766771_+	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_103155477.1\|767245_767374_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_086017781.1\|767708_767819_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_000640723.1\|767846_768164_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_071936816.1\|768160_768271_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_072615386.1\|768307_768745_+	hypothetical protein	NA	NA	NA	NA
WP_159074659.1\|769408_769885_+	hypothetical protein	NA	NA	NA	NA
WP_103154574.1\|769863_769992_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103154573.1\|770023_770734_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_103155241.1\|771085_771232_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_039470334.1\|771243_771996_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.5e-22	32.4
WP_089529793.1\|772880_774414_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

784953 : 802010

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038964128.1\|784953_785898_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_103154439.1\|786222_786429_+	hypothetical protein	NA	NA	NA	NA
WP_080584369.1\|786580_786703_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_000233292.1\|786740_786974_+	hypothetical protein	NA	NA	NA	NA
WP_038964128.1\|787510_788455_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_085050507.1\|788689_788779_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038940770.1\|788801_789299_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_017420534.1\|789295_789568_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_072036438.1\|789608_789770_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038964951.1\|789796_790285_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_038964949.1\|790430_790742_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_072601184.1\|790732_790867_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038964128.1\|791238_792183_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_103154943.1\|792379_792535_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_089529793.1\|793354_794889_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080582047.1\|795018_795231_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_086016742.1\|795175_795469_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_103154542.1\|796236_796347_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_103154541.1\|796790_797968_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.0e-116	65.5
WP_038940866.1\|799601_799835_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_072599525.1\|799842_799953_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_038940865.1\|799982_800756_+	nuclease	A0A2R2ZH57	Clostridioides_phage	1.3e-26	34.4
WP_101959077.1\|800773_800839_+	hypothetical protein	NA	NA	NA	NA
WP_103154949.1\|801089_802010_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.2e-152	85.9

DBSCAN-SWA_3

1809156 : 1816210

Powai_lake_megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017419980.1\|1809156_1809582_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	6.6e-20	40.6
WP_038939327.1\|1809645_1810944_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	5.0e-34	33.1
WP_011078531.1\|1811096_1811291_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011078532.1\|1811371_1811710_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_017789359.1\|1811721_1813575_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.4e-108	40.0
WP_038963329.1\|1813596_1814112_-	co-chaperone HscB	NA	NA	NA	NA
WP_011149601.1\|1814172_1814496_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-25	52.3
WP_011078536.1\|1814568_1814952_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-52	77.4
WP_013572350.1\|1814995_1816210_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	2.2e-31	32.1

DBSCAN-SWA_4

2024798 : 2033677

Vibrio_phage(33.33%)

integrase,tRNA

attL 2019807:2019821|attR 2039804:2039818

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2019807:2019821	attL	NA	NA	NA	NA
WP_011078711.1\|2024798_2025818_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.8e-109	58.9
WP_001145625.1\|2026046_2026262_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_017421268.1\|2026290_2026734_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.8e-26	46.6
WP_038964443.1\|2026820_2028590_+	DNA primase	A0A1S5RG24	Helicobacter_phage	5.4e-47	29.7
WP_038940606.1\|2028689_2030564_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	35.4
WP_101958315.1\|2030951_2032193_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	6.9e-110	47.6
WP_102983139.1\|2032453_2033677_-	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	1.7e-31	31.7
2039804:2039818	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2979431 : 2994679

uncultured_Mediterranean_phage(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026130622.1\|2979431_2980733_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.2e-131	58.5
WP_017420271.1\|2980977_2981259_+	cell division protein FtsB	NA	NA	NA	NA
WP_072600760.1\|2981258_2981972_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_017420273.1\|2981968_2982445_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_072600762.1\|2982480_2983524_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_017420275.1\|2983529_2984297_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-68	51.4
WP_038941444.1\|2984299_2984926_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-38	53.6
WP_038964354.1\|2984969_2985866_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.5e-13	34.1
WP_017420278.1\|2985946_2986939_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.5e-35	34.8
WP_026050395.1\|2987014_2989576_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-30	22.2
WP_017420280.1\|2989659_2990163_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.1e-24	43.3
WP_038941440.1\|2990295_2991345_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.8e-111	60.3
WP_038964353.1\|2991454_2991916_+	recombination regulator RecX	NA	NA	NA	NA
WP_045589573.1\|2992096_2994679_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-78	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage