CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028490	Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group) chromosome, complete genome	2 crisprs	WYL,cas3,DEDDh,csa3,PD-DExK,DinG,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028490_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028490_1

3813410-3813499

Orphan

Consensus_repeat	Method
TCGCTCCTACGCCCTTCGGGCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028490_1

>merge|NZ_CP028490|1|3813410-3813499|CRISPRCasFinder
TCGCTCCTACGCCCTTCGGGCAGAAGCCAAGCACTCTCGAGAACAATGCGGGATAGCCGCCCCGGTCGCTCCTACGCCCTTCGGGCAGAA

>NZ_CP028490|1|1|3813410-3813499|CRISPRCasFinder
TCGCTCCTACGCCCTTCGGGCAGAA	GCCAAGCACTCTCGAGAACAATGCGGGATAGCCGCCCCGG
TCGCTCCTACGCCCTTCGGGCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028490.1\|WP_003342973.1\|3805403_3807308_-\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP028490.1\|WP_024683742.1\|3807384_3808002_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225692
NZ_CP028490.1\|WP_003393560.1\|3809950_3810403_-\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|225693
NZ_CP028490.1\|WP_032714930.1\|3808090_3808897_-\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_CP028490.1\|WP_003317170.1\|3810393_3811011_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|182682
NZ_CP028490.1\|WP_004414795.1\|3825726_3826365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270690
NZ_CP028490.1\|WP_029572073.1\|3813537_3815427_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP028490.1\|WP_003317168.1\|3811218_3811965_+\|DUF3298-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_CP028490.1\|WP_003346807.1\|3823808_3825611_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NZ_CP028490.1\|WP_004414810.1\|3811933_3813223_-\|putative-hydroxymethylpyrimidine-transporter-CytX	unknown	unknown	gnl\|CDD\|274096
NZ_CP028490.1\|WP_016567042.1\|3821170_3822127_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_003404685.1\|3822255_3823680_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NZ_CP028490.1\|WP_029572072.1\|3808984_3809356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_003414437.1\|3819146_3820322_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223651
NZ_CP028490.1\|WP_016567051.1\|3809346_3809754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_003318197.1\|3818765_3819098_+\|multidrug-SMR-transporter	unknown	unknown	gnl\|CDD\|137367
NZ_CP028490.1\|WP_003392099.1\|3815853_3817293_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP028490.1\|WP_017278688.1\|3820318_3821134_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381321
NZ_CP028490.1\|WP_029572070.1\|3804429_3805407_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_CP028490.1\|WP_017278687.1\|3817415_3818696_-\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589

Protein	Function_ID	Function_description	E-value
NZ_CP028490.1\|WP_003342973.1\|3805403_3807308_-\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP028490.1\|WP_024683742.1\|3807384_3808002_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	2.75907e-71
NZ_CP028490.1\|WP_003393560.1\|3809950_3810403_-\|DUF1249-domain-containing-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	9.89961e-56
NZ_CP028490.1\|WP_032714930.1\|3808090_3808897_-\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	1.84039e-95
NZ_CP028490.1\|WP_003317170.1\|3810393_3811011_-\|NUDIX-domain-containing-protein	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	9.91993e-72
NZ_CP028490.1\|WP_004414795.1\|3825726_3826365_+\|hypothetical-protein	gnl\|CDD\|270690	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase and Choline Kinase family. This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	4.28856e-05
NZ_CP028490.1\|WP_029572073.1\|3813537_3815427_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP028490.1\|WP_003317168.1\|3811218_3811965_+\|DUF3298-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	2.6021e-06
NZ_CP028490.1\|WP_003346807.1\|3823808_3825611_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NZ_CP028490.1\|WP_004414810.1\|3811933_3813223_-\|putative-hydroxymethylpyrimidine-transporter-CytX	gnl\|CDD\|274096	TIGR02358, purine-cytosine_transport_protein, putative hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. [Transport and binding proteins, Nucleosides, purines and pyrimidines, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	9.69231e-110
NZ_CP028490.1\|WP_003404685.1\|3822255_3823680_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NZ_CP028490.1\|WP_003414437.1\|3819146_3820322_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	3.28664e-56
NZ_CP028490.1\|WP_003318197.1\|3818765_3819098_+\|multidrug-SMR-transporter	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	2.38663e-28
NZ_CP028490.1\|WP_003392099.1\|3815853_3817293_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.01691e-113
NZ_CP028490.1\|WP_017278688.1\|3820318_3821134_+\|aldo/keto-reductase	gnl\|CDD\|381321	cd19095, AKR_PA4992-like, Pseudomona aeruginosa PA4992 and similar proteins. Pseudomona aeruginosa PA4992 is the prototype of this family. It is a putative aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	4.66457e-79
NZ_CP028490.1\|WP_029572070.1\|3804429_3805407_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	3.65089e-09
NZ_CP028490.1\|WP_017278687.1\|3817415_3818696_-\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0

>NZ_CP028490.1|WP_004414810.1|3811933_3813223_-|putative-hydroxymethylpyrimidine-transporter-CytX
MNTPGTYSPDTPVPASQRVFGGRDLFSLWFSLGIGLMVLQTGALLAPGLGMSGSMLAIFLGTLVGVLLLASVGVIGSDTGLSSMAALKLSLGSKGASLPAVLNLLQLIGWGSFEIIVMRDAASLLGARVFAEGSLWSSPLLWTLLFGALATLLAVSGPLTFVRRFLRKWGLWILLTACAWLTWNLLAKADLPALWATSGDGSLPFASGFDIAIAMPLSWLPLIADYSRFGQRPKSVFGGTAAGFFIGNFWLMSLGVAYTLAFAPSGEVNALLLALAGAGLGIPLLLILLDETENAFADIHSAAVSSALLSRIKVEHLALTIGVVCTLIACLAPLAQYQNFLLLIGSVFAPLFGVVLVDHFILRGRSGQVAEGGLRWMSLLAWLGGLSTYHLLANLYPEVGATLPALIVAGVLQLLIGGAINRGRGTVPA
>NZ_CP028490.1|WP_003317168.1|3811218_3811965_+|DUF3298-domain-containing-protein
MSLLRITSLACLALLLGACQSLFTPNMRTPLQVQRDASELIKPGCTTADCPLVNIDTVHFPDEPRLDAIVQKTLLQLTVADSSASPPVSIKAYQEQFLSQAQGRNASYLQAKVREQHDGIVVVELSSYLETGGAHGNPGRAFINYSRQQQKVLTLADMIIPGKESEFWQKAQLAHQGWLVSTKMNEDSEFMKTWPFKRTPHIALTYGAVILKYSVDTIAPYSMGHIELKIPYPQLNGILKPELFPGRG
>NZ_CP028490.1|WP_003317170.1|3810393_3811011_-|NUDIX-domain-containing-protein
MTQTTRSAPSAFETIKRENCFKGFYKLDKLHVRHELFAGGMSKEISRELFVRHDAVCVLPYDAKRDEVVLIEQFRVGAMKKTNNPWLVELVAGLIDKDEQPEEVAHREAEEEAGLKFEALWPITKYFPSPGGSDEFVHLFLGRCTSEGAGGLHGLESEGEDIRVTVWSFDDAMQAMKDGIIKNASTIIALQWLALNRAEIRGLWS
>NZ_CP028490.1|WP_003393560.1|3809950_3810403_-|DUF1249-domain-containing-protein
MVVSPVRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVCQEHSLPWLPVPKLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>NZ_CP028490.1|WP_016567051.1|3809346_3809754_-|hypothetical-protein
MSYLGSHLNHCRAVPFNWYDTWLVVVSGDGPNICGHALLKAGEFYFHIAGLAERPYFMSETDYRRYLNESSKTELFRRRILLTEPDAAQRKLEELSAKPWHWFGIPNNCVSYVEEIFSAGGSRESMITNCPVRWR
>NZ_CP028490.1|WP_029572072.1|3808984_3809356_-|hypothetical-protein
MAMIIYRALIGGFTGLIFGLLLYVGLITLTGSALRGEHSLYMAIIGAVIGILSLRLMPWIVHLAGLAGMILGVALELLLAGYLWPGMPYERVLSYLLGAGLAGMVSAGLIASIVLKHRANQQM
>NZ_CP028490.1|WP_032714930.1|3808090_3808897_-|3',5'-cyclic-AMP-phosphodiesterase
MPSAALSSSVLLVQISDSHLFAEADEALLGMSTRDSLEKVVDRVLAEQPRIDLVVASGDISQDGSVESYEAFRQISGRIDAPARWFAGNHDELQQMEQVAQHHGLLDPVVDIGQWRVTLLDSAVPGSVPGFLGAAQLQLLEQSLSEAPDRHHLVCLHHHPVAIGCEWMAPIGLRNADALFAVLDRFPQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSVDFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>NZ_CP028490.1|WP_024683742.1|3807384_3808002_-|alpha/beta-fold-hydrolase
MTSDTPSLLYIHGLNSSALSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAITALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAEFEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRACALRIQAGGDHSFQGFAERMPALLTFAGFAPDLLQKIDLSAL
>NZ_CP028490.1|WP_003342973.1|3805403_3807308_-|DNA-topoisomerase-IV-subunit-B
MATPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>NZ_CP028490.1|WP_029572070.1|3804429_3805407_-|esterase-like-activity-of-phytase-family-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGHLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGAVLKVPVSGKPFWLDLPQALVDQAQAQGMLQRFNAIFEGIAVNPAGDRLWLAAEREKRGLLVVQRDKEPWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQVERCWSLAKEAMVPSRRYDQPYGLTEALVVDETGAWIGIDNNFGVRADGEMRPIVWRFAAPEAGWSAEQ
>NZ_CP028490.1|WP_029572073.1|3813537_3815427_-|phosphomethylpyrimidine-synthase-ThiC
MSIKAKNAAHLSESAQVDSGSVQPFTRSQKIYVQGSRPDIRVPMREITLDVTPTDFGGEINAPVTIYDTSGPYTDPNVIIDVRKGLADVRSPWIDSRNDTERLPGLSSNFGQQRLSDAELTALRFAHVRNPRRAKAGANVSQMHYARQGIITAEMEYVAIRENMKLQEARAAGLLTQQHAGHSFGASIPKEITAEFVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTWGIRWGSDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVGGAAEDLTWELFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEDICEIMKAYDVSFSLGDGLRPGSIADANDAAQFGELETLGELTKIAWKHDVQTMIEGPGHVPMQLIKENMDKQLECCDEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKDDVKTGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTARSYHDETLPKDSAKVAHFCSMCGPKFCSMKITQEVREYAANQRIEALDVDVAKGLAEQAERFKQEGSQLYKKV
>NZ_CP028490.1|WP_003392099.1|3815853_3817293_+|TolC-family-outer-membrane-protein
MLRKLSLVVAVSFASSGLTWAAELPRPTQTGLLSVYQQAVDNNADLAASRADYDARKEAVPQARAGLLPNISGSAQNSSTRTSIDQPRAVATRSGNLYQATLSQPIFRADRWFQLQAAEASNEQAALELSATEQNLILQSAQSYFSVLRAQDNLASTKAEEAAFKRQLDQANERFDVGLSDKTDVLQAQASFDTSRASRLIAQRQVDDAFQALVTLTNREYNSIEGIVHTLPVLAPTPNDAKAWVDTAAQQNLNLLASNYAVNAAEETLRQRKAGHAPTLDAVATYQRGDNDALGFSNPNYTGRNYGGDVEQRSIGVQLNIPIYSGGLTSSQVREAYARLSQSEQRRESLRRQVVENTRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYASVRDYNNTRYDYILDNLRLKQAAGTLNPGDLQDLSRYLKADYNPDKDFLPPDLATAAQKNFERPAKR
>NZ_CP028490.1|WP_017278687.1|3817415_3818696_-|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase
MNRTLYTVLFHLGLPLVALRLWLRARKAPAYRQRIGERFARGLPVMQRGGIWVHAVSVGESIAAAPMIRSLLVQYPQLPITVTCMTPTGSERIKALFASEPRIQHCYLPYDLPWAAAGFLDQVQPRLGIIMETELWPNHIHQCSLRGIPVVLANARLSERSARGYARFAGLTRPMLTEMAWFAVQTEAEAQRFLDLGARPECVAVTGSIKFDLSIDPQLLQRAAQQREQWQTTQRPVWIAASTHAGEDESVLAAHRTLLTSHPDALLILVPRHPERFDSVHALCQQQGFATVRRSTEQAVTPDVSVLMGDTMGELLFLYALADIAFVGGSLVPNGGHNLLEPAALAMPVLSGPHLFNFLEIAAMLRKAGALQEVNDAAALAAAVQGLFDQPQQSRNMADAGLAVMKANQGALQRLLDGIGRLMSRR
>NZ_CP028490.1|WP_003318197.1|3818765_3819098_+|multidrug-SMR-transporter
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITYAIWSGMGIVLVSIAAFFIYGQKLDLPALLGMGMIVAGVAVIQLFSKTAGH
>NZ_CP028490.1|WP_003414437.1|3819146_3820322_+|FAD-dependent-oxidoreductase
MPSVISTDVLIVGAGVAGLWLNARLRRQGFSTVLVESASLGGGQSLKSQGIIHGGAKYALHGALSGASEAIADMPRRWREALDGKGELDLSGVRLLSEAHYLWSPGTIAGNLTSFFASKAVRGRVDQVKGEQLPPALQNPKFKGKVYRLAELVVDVPSLIGRLAELAGDSLLAGQHIEPLFEGDELIGLRVDGRDIHAQRIVLSAGGGNADLLNALGVSQPQMQRRPLHMVLVKGPTLKPLYAHCLGGGPKPRITVTTHPAADGQWVWYLGGDLAEADGVARQPDAQIAVARKELEALLPWVDLSQAQWATLRVDRAEPAQSGLVRPDNAFLDSQQRLMIGWPTKLALAPDFADRVLSQLSRDGIHPTPQAALSDVPRPPMAIPVWDELLP
>NZ_CP028490.1|WP_017278688.1|3820318_3821134_+|aldo/keto-reductase
MSLKTLHNLHRPLGSTGLNVSPLGLGTVKLGRDQGVKYPSGFKIPDDQQAQMLLRMARDMGINLIDTAPAYGTSEERLGPLLRGQRQDWVIVSKVGEEFVNGQSSHDFSAAHTRTSVERSLKRLETDFLDLVLVHSDGNDLAILNDAGVYQTLADLKREGKIRGFGFSGKTVEGGLLALREGDCAMVTYNLNEQDEKPVLDYAQAHGKGILVKKALASGHVCLTPGIDPVHASFQLLFEHPAVASAIVGTINPLHLAHNVATAAAVICRQA
>NZ_CP028490.1|WP_016567042.1|3821170_3822127_+|hypothetical-protein
MPRTLIRKNPSNFKTLPLFVEATAESLSYQSVGMPMNFAQTLQRRRKIDVPDTEHFATELANLGVSVRLTVNWQNRDYWVLVRQRRQDRGDVVLKLISGYVPAHELTLPLHTAIQEVAEECLIETPQGWLSGLFKETWLPAPYAAALHYREAMPFRLSPLSGAARPVRTGSLTLLERPRAYVHLPTASLQLIYDMRLEIPKEARPVSLFHVDEALENDQLVARLNRSKPDLYLMPLENGAPLPELYTLRRDKLIPAGTRGLYLAESFAAQDGWVVREERIRWKDWLRQQGMAPPAKKSGLKRLTGKARELLHSISGKL
>NZ_CP028490.1|WP_003404685.1|3822255_3823680_-|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNIAALGAPASLVGVTGDDEAAESLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRIDFEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQALIQAARKRGIPVLADPKGKDFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLRPDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTAAISAPELRRAIQREEGSERGVLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLEQARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLAGLGAVDWVISFPEGTPENLLTHVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG
>NZ_CP028490.1|WP_003346807.1|3823808_3825611_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MTTSESSATSSVKIYFRLLSYVRPYVGIFLLSIIGFVIFASTQPMLAGILKYFVDGLTNPEAVLFPNVPYLRELQLLQAVPLLIVLIAAWQGLGSFLGNYFLAKVSLGLVHDLRVELFNKLLVLPNRYFDTTNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFIYLLMMNWKLTLVMLAILPLIAVMVGTASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGESYEQARFAQASNSNTKKQLRMTKTGAIYTPMLQLVIYSAMAVLMFLVLFLRGEATAGDLVAYITAAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDVEEEVDTGTIERERVTGHLEVKNLSFFYPQTARQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDMGNILLDGVEINDYRLRNLRRHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAKEFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVERGTHSELLAQNGYYARLHAMGLDEPAPVGAV
>NZ_CP028490.1|WP_004414795.1|3825726_3826365_+|hypothetical-protein
MQALDHAHYLEQVQGAEVLEADGTGDKVLRLRDGSMLKLFRRKRLVSSAAWYPYAQRFADNCETLAKRDIPCPRIRSVSRIAEIERDAVHYDPLAGFTLRQLLGSAVADDKLRRQLGSFIAGLHEKGIYFRSAHLGNVILTPEGSLGLIDIADMKTYRRALRKNLRLRNFKHMLRYQEDRQWLLDNGNPAFLDGYMSAQTLCDTSELAQAVQ

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Crispr_ID: NZ_CP028490_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028490_2

4670604-4670752

Orphan

Consensus_repeat	Method
CGTCATACCCGGATCTGCTTTTGATTCTGGCCGAAGGCCGTAGGAGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028490_2

>merge|NZ_CP028490|2|4670604-4670752|CRISPRCasFinder
CGTCATACCCGGATCTGCTTTTGATTCTGGCCGAAGGCCGTAGGAGCGAACCGGGCGACGCTTCGCTTGTTCGCGAAGGCGCCGCCGCCGGACACTACCGTCATACCCGGATCTGTTTTTGATTCTGGCCGAAGGCCGTAGGAGCGAAC

>NZ_CP028490|2|2|4670604-4670752|CRISPRCasFinder
CGTCATACCCGGATCTGCTTTTGATTCTGGCCGAAGGCCGTAGGAGCGAAC	CGGGCGACGCTTCGCTTGTTCGCGAAGGCGCCGCCGCCGGACACTAC
CGTCATACCCGGATCTGTTTTTGATTCTGGCCGAAGGCCGTAGGAGCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028490.1\|WP_003318259.1\|4665669_4666215_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP028490.1\|WP_057419529.1\|4683151_4684144_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_029572669.1\|4676716_4677454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_029572671.1\|4675580_4676150_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP028490.1\|WP_029573091.1\|4661848_4662322_-\|YiiD-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|370533
NZ_CP028490.1\|WP_080392774.1\|4678173_4679748_+\|deoxycytidylate-deaminase	unknown	unknown	gnl\|CDD\|238613
NZ_CP028490.1\|WP_003394281.1\|4662308_4663694_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP028490.1\|WP_057419546.1\|4667620_4670533_+\|aminotransferase	unknown	unknown	gnl\|CDD\|235716
NZ_CP028490.1\|WP_004415290.1\|4673184_4673391_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_024959089.1\|4670973_4671852_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP028490.1\|WP_017279094.1\|4660075_4660918_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NZ_CP028490.1\|WP_029572670.1\|4676232_4676706_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP028490.1\|WP_029572673.1\|4673613_4674888_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP028490.1\|WP_003427268.1\|4674925_4675456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028490.1\|WP_017279093.1\|4658264_4658708_+\|peptidoglycan-binding-protein-LysM	unknown	unknown	gnl\|CDD\|236880
NZ_CP028490.1\|WP_057419547.1\|4663690_4665499_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP028490.1\|WP_003394293.1\|4671857_4672964_+\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP028490.1\|WP_003372295.1\|4659512_4660079_+\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_CP028490.1\|WP_003343604.1\|4658752_4659415_-\|GMP/IMP-nucleotidase	unknown	unknown	gnl\|CDD\|237882
NZ_CP028490.1\|WP_029573284.1\|4666295_4667378_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649

Protein	Function_ID	Function_description	E-value
NZ_CP028490.1\|WP_003318259.1\|4665669_4666215_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	8.67955e-108
NZ_CP028490.1\|WP_080392774.1\|4678173_4679748_+\|deoxycytidylate-deaminase	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	7.50141e-31
NZ_CP028490.1\|WP_029572671.1\|4675580_4676150_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.63537e-25
NZ_CP028490.1\|WP_029573091.1\|4661848_4662322_-\|YiiD-C-terminal-domain-containing-protein	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	8.65267e-64
NZ_CP028490.1\|WP_003394281.1\|4662308_4663694_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP028490.1\|WP_057419546.1\|4667620_4670533_+\|aminotransferase	gnl\|CDD\|235716	PRK06149, PRK06149, aminotransferase.	0
NZ_CP028490.1\|WP_024959089.1\|4670973_4671852_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP028490.1\|WP_017279094.1\|4660075_4660918_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	1.20782e-110
NZ_CP028490.1\|WP_029572670.1\|4676232_4676706_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.83037e-07
NZ_CP028490.1\|WP_029572673.1\|4673613_4674888_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	4.50585e-165
NZ_CP028490.1\|WP_017279093.1\|4658264_4658708_+\|peptidoglycan-binding-protein-LysM	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	3.9746e-77
NZ_CP028490.1\|WP_057419547.1\|4663690_4665499_-\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
NZ_CP028490.1\|WP_003394293.1\|4671857_4672964_+\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP028490.1\|WP_003372295.1\|4659512_4660079_+\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	2.16815e-106
NZ_CP028490.1\|WP_003343604.1\|4658752_4659415_-\|GMP/IMP-nucleotidase	gnl\|CDD\|237882	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional.	5.68119e-74
NZ_CP028490.1\|WP_029573284.1\|4666295_4667378_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0

>NZ_CP028490.1|WP_057419546.1|4667620_4670533_+|aminotransferase
MPLATLIRRSSLPCPEVSVDQALQLLSEHYGLSGTLKALGSQQDRNFLLDTGTRRYVLKICHGAYSTTELNAQHAALHHLAGHSAFKVPGVIRANDTEQLLSVDIDGQAVHVRLLEFIDGQSLGHVEHLGRDIVVELGELCAHVDIALADFDHPGLQRILQWDPRHAHALIKHLLPVIKDADARACLIEAGERAHRRLLPLIAALPIQAVHLDISEHNAVWRREAGHPWHLQGLIDFGDLLSTWRVADLSVTCAALLHHAEGDPLYILPAIAAYHALNPLKIEELQALWPLIVARSAVLVLSSEQQASVESGNAYIQANLAGEWNIFDVATSVPMALMEAAILRAVGLDLPPVEQPAYSPLLPSLSGFQPVLVDLGVLSEHFVAGNWEQSGIDEYLLSQAAGDSGLAASRFGEYRLSRTLPDCASEPETFALHVELHVPAATPLHAPFDGTLRLTADAAVLLVGERISLKLWGVLPEASLAGQVAAGTLIGLGGGSLLLQLCTEPDLSPPLFTTPAWADVWRAACPSPSALLGFDCDAPALQDAAQLLARRDASFARSQKHYYQAPPQIERGWRNHLIDMQGRSYLDMLNNVAVLGHGHPRMAHEAARQWSLLNTNSRFHYAAIAEFSERLLKLAPEGMDRVFLVNSGTEANDLAIRLAWAYSGGRDMLSVLEAYHGWSVATDAISTSIADNPQALSTRPDWVHPVTAPNTYRGTFRGADSAPEYLRSVDQALATLAEQQRQVAGFICEPVYGNAGGISLPPGYLQQVYQKVRAVGGVCIADEVQVGYGRLGHYFWGFEEQGVVPDIISMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSSGGSPVSCRIGMAVLDVMEEEKLWDNARIVGDHFKARLQALADKHPLVGAVHGMGFYLGMELVRDRHTLEPATEETARLCERLRELGIFMQPTGDYLNILKIKPPMCTTRRSVDFFVDNVSKVLHELE
>NZ_CP028490.1|WP_029573284.1|4666295_4667378_-|dTDP-glucose-4,6-dehydratase
MRILVTGGAGFIGSALIRRLINNTEHEVLNFDKLTYAGNLESLQSIATDTRYEFVQADICDQARVSAVLERFAPQAIMHLAAESHVDRSIDGPAEFIQTNIVGTYSLLEATRAWWLKLPEAQRQAFRFHHISTDEVYGDLHGVDDLFTETTPYAPSSPYSASKAASDHLVRAWYRTYGLPVVVTNCSNNYGPFHFPEKLIPLVILNALAGKPLPVYGNGLQVRDWLYVEDHARALLKVVTEGEVGETYNIGGHNEQKNIDVVRGICALLDELAPQHPAGVAQYSDLITYVVDRPGHDQRYAIDASKIDKELDWTPEETFESGLRKTVQWYLDNLDWCRRVQDGSYQGERLGFTEPKDLIA
>NZ_CP028490.1|WP_003318259.1|4665669_4666215_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MNVVATKLPEVLILEPKVFGDERGFFYESFNAKAFQAATGLTREFVQDNHSRSQRGVLRGLHYQIENAQGKLVRVTVGKVLDVAVDIRRSSPNFGQWVGVELSAENARQLWVPEGFAHGFVVLSEHAEFLYKTTDYYTPSAERCIAWDDADLAIDWQFDGQPNLSAKDQQGKRLKEADLFP
>NZ_CP028490.1|WP_057419547.1|4663690_4665499_-|sensor-histidine-kinase
MTPALPRRPRWRSLALLALCLAPLLWPLEHLAERYYRNVLANQNRQTLDLYVANLLGTLHRYETLPQILGDLPALRAALAAPGHTPTLVNANRLLSEITRQTGADVMYLMDANGLTLAASNSDQKDSFIGRNFSFRPYFIDARAGRTGRFFGLGTTSAKRGYFFAGPVRDGERIIGVLVVKVDLDHTETLWGKTPEQLLLTDQNGVVILTSNPEWRFRATRDLTDDEKKAIVAIQSYPTRDPRPLRIDEHAWLTQTQAIEETGWNVNILAPRALVDRQVRTVVAIGGAALLVLMLLLGLMMQRRRHYLDRIAFEAKARRELEMRVIERTSDLEGLNSRLRQEVLEREQAQQELVQAQDELVQTSKLTALGTMSASISHELNQPLAAIRSYAENAEVLLDHQRTEDARGNLKLISELTGRMASIIAHLRAFARRDRHAPESVALQPALEDALALLAKRRRAMEVELIRDLPDATIWVQAGETRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLYIRDNGPGFSQEALARAREPFFTTKTRTQGLGLGLAICDTLMRALGGELLFANHPSGGALLTLRLRAGASGANLQPPEDLSA
>NZ_CP028490.1|WP_003394281.1|4662308_4663694_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSSDTAIDSQIQVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALRRLVLDNRSLRLALSDRQQLSTRLIGQSPPILRLREQIGALAGTRADVLILGETGAGKEVVARALHDLSNRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLDEIESMSLDVQVKLLRLLQERVVERMGSNQQIPLDIRIIAATKEDLRHAADQGRFRADLYYRLNVASLRIPPLRERGEDALMLFEHYADAASMRHGIPKHELKPGQRALLLRHNWPGNVRELQNAAERFALGLELELEGADAEQAPPPGGGLSDQVESFERALIAAELARPHSSVRSLAEALGVPRKTLHDKLRKHGLTFGDSSGASDDND
>NZ_CP028490.1|WP_029573091.1|4661848_4662322_-|YiiD-C-terminal-domain-containing-protein
MTTIEPEHDAAHALEQVLHHDIPLTREMGMRVIDWHNQTLRLHLPLAPNVNHKSTLFGGSLYCGAVLAGWGWLHLRLREAGITDGHIVIQDGQISYPLPVRSDAIARCDAPELAQWEKFIATYQRRGRARLTLHTCISEQDSEEQAVRFVGQFVLHR
>NZ_CP028490.1|WP_017279094.1|4660075_4660918_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MIDSLHNLPHPLLAPVIELTRLAGEVILPFWRANVTVTTKTDDSPVTAADLAAHQVLVEGLQALDPDIHVLSEEDADIPLSERAGWERWWLVDPLDGTKEFISGSEEFTVNVALIERGRVVFGVVSMPTNNRCYFGGAGLGAWRSDGVGHMQPIAVRNQLGEGQTFTVVASRRHSSPEQEHLLAGLSNGLGHLQLTNIGSSLKFCLLAEGAADCYPRLAPTSQWDTAAAQGVLEGAGGEVLQLDGQPFSYPARESLLNPFFLALPANAEWRDKLLVLAQS
>NZ_CP028490.1|WP_003372295.1|4659512_4660079_+|ADP-compounds-hydrolase-NudE
MRQKPTVLARAIVASSRLFRVEELQLRFANGVERTYERLASKGTGPGAVMIVAMLDADHAVLIEEYCGGTDAYELSLPKGLIEPGEDVLAAANRELKEEAGFGARELELLTELSLSPGYMSQKIQVVLATDLYEERLEGDEPEPIRVDRINLRELSSLAQNAQFSEGRALAALYLTRDLLTQRGLFQP
>NZ_CP028490.1|WP_003343604.1|4658752_4659415_-|GMP/IMP-nucleotidase
MLSMPWSEIDTVLLDMDGTLLDLHYDEHFWMQHLPQRYAELHGVSFAMAWLELKPLFENNAGTLNWYCLDFWSAELNLSVRDLKREIAHMIALRPDAETFLAALQKAGKRVIMITNAHRDSLSLKMERIELAPYFERLISSHDYGFPKESQHFWDALKAETAFDPARSLFIDDTLPILRSARHFGVAHLLAVSQPNSQKGPKDTEEFAAVDDYRELSKGL
>NZ_CP028490.1|WP_017279093.1|4658264_4658708_+|peptidoglycan-binding-protein-LysM
MSLISFIKEAGEKILDALLPDDKANADELLRKHISEVGLGNPNVQTEVSGSTVIVKGEVSSQEEREKIVLTLGNIHGVEKVDDQMTVAGGAGAESEYVEVKSGDTLSAISKRVYGDANQYQKIFEANKPMLKSADKIYPGQKLRIPK
>NZ_CP028490.1|WP_024959089.1|4670973_4671852_+|N-carbamoylputrescine-amidase
MSRIVSVAATQMACSWDLEANIETAEKLVREAAAKGAQIILIQELFETPYFCQKPNPDYLQLATTLDSNVAIKHFQKIAKELQVVLPISFFELAGRARFNSIAIIDADGSNLGIYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYAKIGVGICWDQWFPECARSMALQGAEILFYPTAIGSEPHDKTISSRDHWQRVQQGHAGANLMPLIASNRIGNEEQDGYDITFYGSSFIANQFGEKVAELNETEEGVLVHSFDLDELEHIRSAWGTFRDRRPNLYGAVKTLDGSLES
>NZ_CP028490.1|WP_003394293.1|4671857_4672964_+|agmatine-deiminase
MTTLNSTPRADGFHMPAEWAPQTQVWMVWPERPDNWRLGGKPAQAAHVAIAKAIARFEPVTVAVSAAQYDNARARLDMPNIRVVEMSSNDAWVRDSGPTFVINDRGEVRGVNWEFNAWGGFDGGLYAPWNLDSQLGSKVLEIERCPRYVTEGFVLEGGSIHVDGEGTLITTEECLLNRNRNPHLTREQIETILGDYLAVDKVIWLPDGLFNDETDGHVDNFCCYIRPGEVLLAWTDDPEDPNYSRCHAALSILENTLDAKGRAFIVHKMPIPGPLFATEEECAGVDQVHGSQERNPSVRLAGSYVNFLIVNGGIIAPSFDDPMDGKAREILQKLFPEHEVVMAPGRELLLGGGNIHCLTQQQPAPHNR
>NZ_CP028490.1|WP_004415290.1|4673184_4673391_+|hypothetical-protein
MNAGMNQQRVRGFSASLSNEARQRVADWLRTTRPVKARPDVRAMLLKRYPAGLFNDAEFEALARVLTD
>NZ_CP028490.1|WP_029572673.1|4673613_4674888_+|OprD-family-porin
MLNTRMGMLALGIISAGQAVAQGQADSKGFVEDSSLNVNLRNAYINRDYKNDREDKSEWGQAFMGTFASGFTQGTVGVGVDAFALYGIRLDGGKGRSGNGGIDFFKQGDSGAAADDLSRAGAAVKARFSNTVIKYGDQMPQLPVLNYDNSRLLPESYTGTLITSKEIDGLEVVAGRFTQEARKSAEGRDSGDLKSINVYGASYKFTDEFSAAFYASDNEDVFKKQYLNLNYVFALPQDQSLTFDFNGYKTRLDKNFTVSDARDNKIWSLAATWAVGIHSFTLAHQRSTGDMGYAYGGYRNDGGFGDGGNTIYLANSYWSDFNGKDERSWQAAYGVDLSGLVLPGLSYKAAYVRGDNIDDGTAGSGDGTEREIFSQLTYVVQSGPAKDLSIRLRNSFLRVSDDAQAYNSEGNETRIFVDYPINVF
>NZ_CP028490.1|WP_003427268.1|4674925_4675456_-|hypothetical-protein
MPRIITDETPAKVVDEQQVKLFGSPKERLDFYRREIHYETTNLSNRTNAYLSAQSFLVIAYASSMANMNTAWGAMFTLVVPPMLALLGLLSTLFAWPGIRAACDIIQHWHHKQAQLLLSEPVIGLTYDDSPLFSDWESSETGPKKSLLFSKRSPWLFSFFWVFLGGFAVFVQLVAD
>NZ_CP028490.1|WP_029572671.1|4675580_4676150_+|GNAT-family-N-acetyltransferase
MTITPTLHTERLLLTPLQLEDAPAVQQRFPLWDIVRYLNNRVPWPYPQDGALRYIQDVALPAIANGTEWHWMIRLQSAPHDIIGSITLMTHPGNNRGFWLHPDWQGRGYMKEACRVINRQWFDVMGMPLMQVPKAAPNEASRRISISEGMRKVSTQDGEFVGGRFEVEIWEMTREEWLARALQAGTSNV
>NZ_CP028490.1|WP_029572670.1|4676232_4676706_+|GNAT-family-N-acetyltransferase
MPLTRNTEPDITLVTVQPEDFETLVAIRIEAMRESLERVGRFDPVRARERFREGFSASCTHYIQVAGSKVGFVVVKPTSDGLLLDHLYIKPVVQGQGIGAAVLRQVFAQADATASTVRVGALKESDSNRFYVRHGFQLVESGEFDNYYLRPQRLPMC
>NZ_CP028490.1|WP_029572669.1|4676716_4677454_-|hypothetical-protein
MVISLTPGNNTSPTITLPNSGITLTPQPLTDAQKEALKNAAANTPAVVYHPSTEVPATTAPMEAVDTWIGRSQSPDFPKMAAQHSNSTEALKTSYEAFTSTLASVYPDLASKKFGFTIEADGNLKAINSSGELSEADTKQLNTLLNASSGLTAAAATYRETAIDLVDADSPWSGSYLGRYNLNKENFANSLDLGALFIPKTSTPSKDQIDGMFFNQLAYKGELHTQESEAAMLAARAAEKAASTG
>NZ_CP028490.1|WP_080392774.1|4678173_4679748_+|deoxycytidylate-deaminase
MSTGNVKALPYTGVVNIATPELEKNIQARIKSRVTKEIVIGVCGAVGCNLADVVDELKNQFGLCNYEVIHVKLSTIIKTYYKSHALPAEHFGKELDHLGVDERYRVLQDLGNSLRKALGDEGLATLAIHELSLARQLQINESADEDPPRTVYIIDQLKNPAEVDLFRLVYKNIFYLVGVMSPQQLRLEQLRQEGMSPVAAQELIERDRNENIRHGQLLEKTVQKSDFFIRNALTTVGSLAKPCSRFVGLVHGQNGLTPTSDESGMYAAHSASLKSACLSRQVGASIADESGNILSVGWNDVPQAGGGLYTADNPNDQRCVTHGRKCYNDFHKLRLVNSIVKILKDSGKVNQELAAELSEKILKDTPAGALIEYSRAIHAEMEAILNIARKSGGTTLNGIMYTTTYPCHNCARHIIASGIKRVVYIEPYEKSLAMDLHSDAISIDLAAEHKIIFETFEGVSPKRYAAFFAFNVKRKDERGQAVSIMNKEASPVSQEILDSYLDVEAKVFDLARAHFVPPVSVPLP
>NZ_CP028490.1|WP_057419529.1|4683151_4684144_+|hypothetical-protein
MVVEKERKELSILSRIFKEGNDCEILKSERPDFIVTYPRHFVGGISVGIEVTELYYNDSSARLKNKEGYIKNVINGSYIHKDDKGEFNVQEVTYLPQGVMSKAFKTKILIEKKYTIDDYRRAFLHTLRKKNKKRTKYQVGLAQTCLVIYDREKYFSKISKQDFVSAFFNSYIMGEIKESPFEEVYLITSFNGGPEEFYVQLKYCLLQNEQARLLDYLASNSLFPKLVDLRISVDDVFAEVLTKKGYLGVRKHRCNDVEAVGCVRYSFNFNESSGKISVFDGFPVLQSGTEDFIVAKNFFSDKSFNRFLKDTSARFASFNVGFETFETCNS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

665885 : 673628

uncultured_Caudovirales_phage(71.43%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029572571.1\|665885_667166_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8
WP_029572570.1\|667166_668561_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_017278762.1\|668611_669610_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_057419537.1\|669706_670708_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.6e-163	84.5
WP_003317943.1\|670704_671040_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-43	78.4
WP_003395712.1\|671036_671336_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
WP_029573161.1\|671335_671698_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.6e-37	61.7
WP_003371788.1\|671699_672092_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.3e-57	82.3
WP_004417288.1\|672326_673628_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.2e-61	36.5

DBSCAN-SWA_2

1113801 : 1144525

Pseudomonas_phage(59.38%)

integrase,head,protease,portal,tail,capsid,terminase

attL 1116869:1116887|attR 1136234:1136252

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003416964.1\|1113801_1114833_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	3.4e-86	52.0
WP_029572587.1\|1114833_1115043_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_024421391.1\|1115152_1115365_+	hypothetical protein	NA	NA	NA	NA
WP_029572586.1\|1115351_1116002_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	5.9e-68	61.8
WP_024664832.1\|1116180_1116393_+	hypothetical protein	NA	NA	NA	NA
WP_029572585.1\|1116419_1117199_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.5e-14	30.6
1116869:1116887	attL	NA	NA	NA	NA
WP_029572584.1\|1117455_1117824_+	hypothetical protein	NA	NA	NA	NA
WP_050492126.1\|1117816_1118182_+	hypothetical protein	NA	NA	NA	NA
WP_154232358.1\|1118336_1118912_+	hypothetical protein	NA	NA	NA	NA
WP_029572581.1\|1119533_1120130_-	hypothetical protein	NA	NA	NA	NA
WP_029572580.1\|1120199_1120454_-	hypothetical protein	NA	NA	NA	NA
WP_108232579.1\|1120450_1121041_-	hypothetical protein	NA	NA	NA	NA
WP_057419634.1\|1121040_1121379_-	hypothetical protein	NA	NA	NA	NA
WP_057407353.1\|1121674_1121881_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	1.1e-15	55.9
WP_003364229.1\|1121943_1122345_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.2e-18	61.7
WP_029573011.1\|1122676_1123024_-	hypothetical protein	NA	NA	NA	NA
WP_029573010.1\|1123041_1123692_-	helix-turn-helix domain-containing protein	A0A2H4J6J6	uncultured_Caudovirales_phage	1.3e-35	40.5
WP_050492140.1\|1124202_1124976_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_029573007.1\|1124972_1125644_+	replication P family protein	A0A1B0YZY6	Pseudomonas_phage	8.8e-43	45.2
WP_029573006.1\|1125640_1125937_+	DUF1364 domain-containing protein	A0A2D1GNQ4	Pseudomonas_phage	2.3e-40	82.3
WP_029573005.1\|1125933_1126365_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	7.1e-54	74.1
WP_057419633.1\|1126361_1127642_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	1.7e-220	86.6
WP_057419635.1\|1127660_1127981_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	7.4e-32	63.2
WP_029573433.1\|1127983_1128325_+	antitermination protein Q	A0A2D1GNB4	Pseudomonas_phage	6.7e-47	82.6
WP_029573434.1\|1128361_1129150_+	hypothetical protein	NA	NA	NA	NA
WP_002553084.1\|1129680_1130052_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.2e-43	87.0
WP_024650633.1\|1130051_1130390_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	3.1e-28	74.1
WP_029573435.1\|1130437_1130722_+	hypothetical protein	NA	NA	NA	NA
WP_057419632.1\|1130725_1131064_+	HNH endonuclease	C4ML58	Xanthomonas_virus	7.3e-22	49.1
WP_029572533.1\|1131203_1131677_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	4.6e-22	51.5
WP_050492125.1\|1131673_1133362_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	2.2e-252	82.9
WP_003313684.1\|1133364_1134579_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	1.3e-177	76.0
WP_029572532.1\|1134565_1135207_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	6.2e-86	76.1
WP_003313682.1\|1135203_1136409_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	2.2e-132	61.7
1136234:1136252	attR	NA	NA	NA	NA
WP_003313681.1\|1136468_1136672_+	hypothetical protein	A0A2H4JG33	uncultured_Caudovirales_phage	6.6e-10	53.1
WP_003313680.1\|1136672_1136972_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	1.0e-38	80.8
WP_003313679.1\|1136971_1137292_+\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	9.1e-30	64.6
WP_162832608.1\|1137301_1137466_+	hypothetical protein	NA	NA	NA	NA
WP_029572531.1\|1137469_1137970_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	9.1e-61	70.3
WP_003313676.1\|1137962_1138349_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	2.0e-55	84.4
WP_029572530.1\|1138403_1138901_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	6.7e-72	80.0
WP_024664861.1\|1138912_1139248_+	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	5.8e-27	56.6
WP_024664862.1\|1139280_1139490_+	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	1.3e-08	63.3
WP_057419631.1\|1139511_1142916_+\|tail	phage tail tape measure protein	A0A223LIN6	Pseudoalteromonas_phage	4.2e-48	49.8
WP_003313671.1\|1142937_1143522_+	hypothetical protein	A0A059VJR9	Pseudomonas_phage	9.0e-60	59.3
WP_057419630.1\|1143521_1144124_+	hypothetical protein	A0A059VA31	Pseudomonas_phage	4.4e-110	96.0
WP_057419629.1\|1144126_1144525_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	4.1e-72	96.2

DBSCAN-SWA_3

1149769 : 1156359

Pseudomonas_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029572884.1\|1149769_1150450_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	2.1e-36	37.9
WP_046235158.1\|1150485_1150716_+	hypothetical protein	NA	NA	NA	NA
WP_029573086.1\|1150775_1151309_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	3.2e-88	92.1
WP_029573085.1\|1151305_1151836_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	1.6e-63	84.6
WP_029573084.1\|1151892_1152072_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	4.4e-10	55.4
WP_029573083.1\|1152068_1153313_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	2.8e-204	85.7
WP_029573082.1\|1153327_1153672_-	hypothetical protein	NA	NA	NA	NA
WP_004417583.1\|1154110_1155181_-	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	7.5e-44	33.7
WP_004417585.1\|1155270_1156359_-	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.5e-20	30.8

DBSCAN-SWA_4

3539301 : 3550119

uncultured_Caudovirales_phage(44.44%)

transposase,integrase

attL 3534508:3534522|attR 3549545:3549559

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3534508:3534522	attL	NA	NA	NA	NA
WP_029571625.1\|3539301_3540264_-\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	9.5e-06	27.2
WP_029571624.1\|3540558_3540909_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.3e-33	58.4
WP_029571623.1\|3540929_3542219_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.4e-168	73.2
WP_029571622.1\|3542228_3542699_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	7.8e-54	64.7
WP_029571621.1\|3542698_3543433_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.2e-103	78.7
WP_029571620.1\|3543515_3544478_-	arsenic resistance protein	NA	NA	NA	NA
WP_080288487.1\|3544570_3545005_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159081252.1\|3545127_3545505_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	2.8e-14	40.3
WP_029571618.1\|3545501_3545846_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.8e-37	66.4
WP_029571617.1\|3545883_3547389_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.2e-144	54.4
WP_029571615.1\|3547785_3548424_-	organomercurial lyase MerB	NA	NA	NA	NA
WP_057419739.1\|3548436_3550119_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.1e-37	27.6
3549545:3549559	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4872262 : 4934139

Bacteriophage(18.75%)

protease,transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017279262.1\|4872262_4873588_-\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_057419765.1\|4873587_4875030_-	TldD/PmbA family protein	NA	NA	NA	NA
WP_003316332.1\|4875153_4876194_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_017279260.1\|4876293_4877040_+	conjugal transfer protein TraX	NA	NA	NA	NA
WP_003393654.1\|4877244_4878441_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_029572542.1\|4878526_4879066_-	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	7.9e-18	34.9
WP_170855983.1\|4879305_4880118_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_003316327.1\|4880163_4880976_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	9.1e-18	27.8
WP_003348751.1\|4881073_4881412_+	hypothetical protein	NA	NA	NA	NA
WP_003316325.1\|4881421_4881673_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.2e-21	61.4
WP_003348749.1\|4881771_4882251_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.4e-28	43.0
WP_016569202.1\|4882618_4883281_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_057419766.1\|4883335_4884193_+	sulfurtransferase	NA	NA	NA	NA
WP_024649263.1\|4884207_4885242_-	hydrolase	NA	NA	NA	NA
WP_003316320.1\|4885509_4886100_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_003393646.1\|4886099_4887590_-	insulinase family protein	NA	NA	NA	NA
WP_003316318.1\|4887586_4888939_-	insulinase family protein	G3MBJ8	Bacillus_virus	1.0e-21	25.5
WP_029573088.1\|4889195_4890680_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_002555631.1\|4890676_4891348_+	cell division ATP-binding protein FtsE	W6JKT0	Anomala_cuprea_entomopoxvirus	3.0e-14	25.8
WP_003393643.1\|4891344_4892379_+	ABC transporter permease	NA	NA	NA	NA
WP_002555629.1\|4892497_4893352_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	3.6e-41	38.5
WP_003319329.1\|4893465_4894413_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_003427609.1\|4895133_4895844_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_029573428.1\|4895924_4896305_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_003341343.1\|4896419_4896620_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_003304387.1\|4896671_4897466_+	thiazole synthase	NA	NA	NA	NA
WP_004415651.1\|4897476_4898211_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_003316128.1\|4898252_4899311_-	hypothetical protein	NA	NA	NA	NA
WP_017279254.1\|4899501_4900014_-	dihydrofolate reductase	F8SJN4	Pseudomonas_phage	1.0e-27	39.2
WP_057419568.1\|4900123_4901503_+	DUF2868 domain-containing protein	NA	NA	NA	NA
WP_017279252.1\|4901495_4902884_+	DUF3482 domain-containing protein	A0A0R6PHS5	Moraxella_phage	1.0e-53	40.5
WP_152537000.1\|4902970_4903129_+	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_002555619.1\|4903208_4903802_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_003393629.1\|4903903_4905376_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_029571633.1\|4905516_4907223_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	9.4e-49	30.0
WP_003316139.1\|4907506_4908025_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_024664139.1\|4908021_4909005_+	FecR family protein	NA	NA	NA	NA
WP_024664140.1\|4909126_4910260_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_003316145.1\|4910256_4910439_+	hypothetical protein	NA	NA	NA	NA
WP_017279247.1\|4910508_4911138_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003393621.1\|4911242_4911746_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_003316148.1\|4911939_4912833_+	acyltransferase	NA	NA	NA	NA
WP_003429245.1\|4912883_4913951_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.3e-29	42.9
WP_003427663.1\|4913930_4914494_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_029571634.1\|4914674_4920491_+	hypothetical protein	NA	NA	NA	NA
WP_080288488.1\|4920581_4921559_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	4.0e-28	41.2
WP_003427678.1\|4921843_4922857_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.3e-26	42.4
WP_003316157.1\|4922922_4924122_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_003316158.1\|4924171_4925029_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003420019.1\|4925321_4925954_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_029571635.1\|4926004_4929025_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_003316160.1\|4929021_4929318_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003316161.1\|4929333_4930584_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_010407077.1\|4930601_4931855_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.5e-101	53.5
WP_029571636.1\|4932115_4933294_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-25	36.4
WP_174208911.1\|4933290_4934139_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

DBSCAN-SWA_6

4999101 : 5070803

Pseudomonas_phage(44.12%)

integrase,bacteriocin,transposase,plate,tRNA,lysis,tail

attL 5005630:5005644|attR 5037228:5037242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004415744.1\|4999101_5000064_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	4.9e-10	24.4
WP_002556076.1\|5000400_5000649_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_003304103.1\|5000661_5001012_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003422691.1\|5001374_5001596_-	hypothetical protein	NA	NA	NA	NA
WP_003422693.1\|5001663_5003049_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_029571664.1\|5003252_5004008_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_003316229.1\|5004050_5004425_-	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_003422698.1\|5004703_5004994_-	hypothetical protein	NA	NA	NA	NA
WP_050492103.1\|5005060_5005786_-	hypothetical protein	NA	NA	NA	NA
5005630:5005644	attL	NA	NA	NA	NA
WP_003316232.1\|5005907_5006126_-	hypothetical protein	NA	NA	NA	NA
WP_029571666.1\|5006427_5007501_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.0e-48	37.5
WP_029571667.1\|5007720_5010207_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	5.8e-15	37.0
WP_003316235.1\|5010476_5012327_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
WP_003411786.1\|5012394_5014350_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.8e-72	38.0
WP_002551877.1\|5014829_5015045_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003411784.1\|5015243_5016269_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.1e-104	56.1
WP_003394968.1\|5016292_5016862_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003316242.1\|5016936_5017290_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_017278505.1\|5017280_5017805_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_024683319.1\|5017924_5019154_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	7.9e-82	47.1
WP_003419771.1\|5019251_5020814_-	SpoVR family protein	NA	NA	NA	NA
WP_003316246.1\|5020810_5022082_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.9e-10	40.4
WP_003316247.1\|5022203_5024126_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003341167.1\|5024410_5024731_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_029572068.1\|5024754_5025630_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	1.0e-06	43.8
WP_003316251.1\|5025629_5026010_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003422719.1\|5026126_5026933_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003422720.1\|5026929_5027919_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003341160.1\|5027915_5029238_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003422723.1\|5029218_5031999_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_029572069.1\|5032128_5033151_+	phosphotransferase	NA	NA	NA	NA
WP_004415804.1\|5033253_5033925_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_004415806.1\|5033925_5034696_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_003422730.1\|5034704_5035709_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_057419691.1\|5035823_5037827_+	sensor histidine kinase	NA	NA	NA	NA
5037228:5037242	attR	NA	NA	NA	NA
WP_017278511.1\|5037823_5038453_+	response regulator transcription factor	NA	NA	NA	NA
WP_108232594.1\|5038559_5039935_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.7e-80	54.7
WP_003394921.1\|5040292_5041417_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
WP_026175240.1\|5041499_5042522_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004415813.1\|5042611_5043859_+	ABC transporter permease	NA	NA	NA	NA
WP_003394916.1\|5043870_5044692_+	ABC transporter permease	NA	NA	NA	NA
WP_017278512.1\|5044951_5045626_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_017278513.1\|5045622_5046441_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_017278514.1\|5046511_5047993_+	anthranilate synthase component I	NA	NA	NA	NA
WP_108232621.1\|5048080_5048200_+	hypothetical protein	NA	NA	NA	NA
WP_029572289.1\|5048196_5050119_-	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_003316268.1\|5050224_5050467_-	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2
WP_002551908.1\|5050588_5050837_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_010419550.1\|5050990_5051602_-	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_003422750.1\|5051791_5052235_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
WP_003316273.1\|5052702_5053533_+\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_134943122.1\|5053656_5054064_+	hypothetical protein	NA	NA	NA	NA
WP_003411734.1\|5054192_5054582_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_003394900.1\|5054562_5054901_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	2.0e-19	57.9
WP_003316276.1\|5054947_5055538_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.1e-52	52.0
WP_002551914.1\|5055534_5055723_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.2e-13	74.5
WP_003422754.1\|5055741_5057238_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.2e-235	80.7
WP_003316279.1\|5057298_5057646_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
WP_029572290.1\|5057642_5057939_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	5.6e-34	76.0
WP_057419576.1\|5058069_5060229_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.2e-72	40.7
WP_017278517.1\|5060225_5061650_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	5.2e-109	45.6
WP_017278518.1\|5061653_5062781_+	hypothetical protein	B5TK72	Pseudomonas_phage	1.6e-113	60.2
WP_003372720.1\|5062777_5063290_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003316288.1\|5063286_5063685_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
WP_003372716.1\|5063674_5064715_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.6e-131	69.8
WP_029572557.1\|5064702_5065302_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.9e-84	71.9
WP_017278519.1\|5065312_5066623_+	hypothetical protein	Q6QI97	Burkholderia_phage	6.8e-47	39.4
WP_010419610.1\|5066631_5066781_+	hypothetical protein	NA	NA	NA	NA
WP_003341090.1\|5066834_5067380_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.2e-68	72.8
WP_029572556.1\|5067376_5067889_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	8.0e-28	48.4
WP_003394873.1\|5068300_5068900_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_003316297.1\|5068920_5069970_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.3e-111	58.0
WP_003316298.1\|5069966_5070803_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028490

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection