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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028325 Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome 1 crisprs cas14j,cas2,cas3,DEDDh 0 0 131 0

Results visualization

1. NZ_CP028325
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028325_1 20592-20686 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2892 3 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 22505 : 30429 8 Vibrio_phage(25.0%) tRNA NA
DBSCAN-SWA_3 37088 : 42052 3 Mamastrovirus(100.0%) NA NA
DBSCAN-SWA_4 46989 : 49246 3 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_5 63262 : 72890 10 Clostridioides_phage(25.0%) integrase attL 51628:51644|attR 73359:73375
DBSCAN-SWA_6 91441 : 93928 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_7 97144 : 99970 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_8 108496 : 111390 3 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_9 135860 : 143431 8 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_10 148645 : 150323 2 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_11 155900 : 156782 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_12 163986 : 169962 4 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_13 185321 : 191287 5 Organic_Lake_phycodnavirus(25.0%) NA NA
DBSCAN-SWA_14 196303 : 199959 4 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_15 211804 : 212446 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_16 216584 : 221911 6 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_17 227290 : 227575 1 Shigella_phage(100.0%) NA NA
DBSCAN-SWA_18 231307 : 232291 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_19 236662 : 249552 9 Tupanvirus(28.57%) NA NA
DBSCAN-SWA_20 253806 : 254244 1 Bacteriophage(100.0%) NA NA
DBSCAN-SWA_21 261894 : 263412 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_22 272949 : 274347 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_23 278515 : 279283 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_24 296771 : 300548 3 Phaeocystis_globosa_virus(33.33%) NA NA
DBSCAN-SWA_25 327234 : 331516 6 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_26 336608 : 338369 2 Helicobacter_phage(100.0%) transposase NA
DBSCAN-SWA_27 342122 : 343256 1 Yellowstone_lake_mimivirus(100.0%) NA NA
DBSCAN-SWA_28 352839 : 356148 5 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_29 366898 : 369958 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_30 374532 : 375591 1 Pseudoalteromonas_phage(100.0%) NA NA
DBSCAN-SWA_31 394170 : 395424 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_32 404261 : 407553 2 Hokovirus(50.0%) tRNA NA
DBSCAN-SWA_33 411508 : 419533 7 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_34 426329 : 427904 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_35 431218 : 437530 6 Bacillus_thuringiensis_phage(75.0%) NA NA
DBSCAN-SWA_36 445044 : 446307 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_37 454408 : 454975 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_38 458443 : 468142 10 Helicobacter_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_39 474643 : 478829 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_40 487030 : 488353 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_41 502299 : 506807 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_42 510528 : 512835 2 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_43 533140 : 534475 1 Powai_lake_megavirus(100.0%) NA NA
DBSCAN-SWA_44 539030 : 547644 8 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_45 552325 : 553210 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_46 564631 : 570329 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_47 577472 : 580573 4 Ostreococcus_lucimarinus_virus(50.0%) NA NA
DBSCAN-SWA_48 583814 : 590268 6 Bacillus_thuringiensis_phage(33.33%) NA NA
DBSCAN-SWA_49 598152 : 602542 3 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_50 608940 : 617110 6 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_51 623458 : 626634 2 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_52 640582 : 641203 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_53 651203 : 654842 4 Cyanophage(50.0%) NA NA
DBSCAN-SWA_54 659843 : 661510 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_55 683675 : 691774 6 Micromonas_pusilla_virus(33.33%) tRNA NA
DBSCAN-SWA_56 705410 : 716122 9 Enterobacteria_phage(40.0%) protease NA
DBSCAN-SWA_57 722646 : 728547 6 Moumouvirus(33.33%) NA NA
DBSCAN-SWA_58 736969 : 738142 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_59 742347 : 746712 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_60 749995 : 753939 4 Cercopithecine_herpesvirus(50.0%) NA NA
DBSCAN-SWA_61 759491 : 760295 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_62 763517 : 770737 5 Marinomonas_phage(33.33%) NA NA
DBSCAN-SWA_63 775546 : 782356 6 Bacillus_virus(50.0%) protease NA
DBSCAN-SWA_64 798819 : 799266 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_65 806705 : 809468 1 Bodo_saltans_virus(100.0%) tRNA NA
DBSCAN-SWA_66 812908 : 813898 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_67 819537 : 821300 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_68 827496 : 831348 9 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_69 838964 : 841406 2 Campylobacter_virus(50.0%) NA NA
DBSCAN-SWA_70 845598 : 859412 9 Cafeteria_roenbergensis_virus(20.0%) NA NA
DBSCAN-SWA_71 871142 : 875251 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_72 878715 : 880613 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_73 886286 : 887888 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_74 894099 : 911637 16 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_75 915534 : 916320 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_76 919786 : 924561 3 Saccharomonospora_phage(50.0%) NA NA
DBSCAN-SWA_77 932442 : 933510 1 Leptospira_phage(100.0%) integrase attL 931084:931143|attR 937705:937804
DBSCAN-SWA_78 941468 : 942137 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_79 947665 : 956179 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_80 959898 : 961680 2 Helicobacter_phage(100.0%) transposase NA
DBSCAN-SWA_81 968377 : 969034 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_82 977346 : 982857 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_83 996803 : 999241 3 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_84 1005674 : 1019199 11 Listeria_phage(33.33%) tRNA NA
DBSCAN-SWA_85 1033767 : 1039144 7 Dickeya_phage(20.0%) NA NA
DBSCAN-SWA_86 1043938 : 1044961 1 Moraxella_phage(100.0%) tRNA NA
DBSCAN-SWA_87 1050372 : 1051683 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_88 1057428 : 1061407 3 uncultured_virus(66.67%) NA NA
DBSCAN-SWA_89 1077265 : 1078543 1 Phage_21(100.0%) NA NA
DBSCAN-SWA_90 1082315 : 1084541 1 Agrobacterium_phage(100.0%) protease NA
DBSCAN-SWA_91 1090289 : 1092889 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_92 1097991 : 1103412 5 Acanthocystis_turfacea_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_93 1133266 : 1135288 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_94 1139588 : 1141628 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_95 1144885 : 1148276 5 Lactococcus_phage(33.33%) NA NA
DBSCAN-SWA_96 1155961 : 1165143 7 uncultured_Caudovirales_phage(25.0%) NA NA
DBSCAN-SWA_97 1171399 : 1173610 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_98 1177416 : 1182662 3 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_99 1207730 : 1210066 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_100 1218447 : 1221422 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_101 1229476 : 1266239 37 Helicobacter_phage(30.77%) protease,tRNA,transposase,integrase attL 1226727:1226742|attR 1268098:1268113
DBSCAN-SWA_102 1275532 : 1277170 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_103 1288065 : 1289931 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_104 1300230 : 1302396 2 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_105 1315150 : 1316260 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_106 1324882 : 1325509 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_107 1344585 : 1347525 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_108 1357156 : 1358533 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_109 1375025 : 1375715 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_110 1384086 : 1388169 4 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_111 1392534 : 1399017 6 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_112 1412712 : 1414097 2 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_113 1425050 : 1430456 4 Agrobacterium_phage(33.33%) NA NA
DBSCAN-SWA_114 1434081 : 1445823 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_115 1449081 : 1450410 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_116 1459659 : 1460421 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_117 1468149 : 1469457 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_118 1472632 : 1473379 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_119 1481897 : 1482869 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_120 1493750 : 1497730 2 Catovirus(50.0%) tRNA NA
DBSCAN-SWA_121 1509860 : 1511530 2 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_122 1523323 : 1524283 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_123 1530013 : 1533953 2 Helicobacter_phage(100.0%) NA NA
DBSCAN-SWA_124 1543884 : 1550804 5 Rhizobium_phage(33.33%) NA NA
DBSCAN-SWA_125 1592174 : 1593506 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_126 1608552 : 1609416 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_127 1615191 : 1616402 2 Erythrobacter_phage(50.0%) NA NA
DBSCAN-SWA_128 1623324 : 1629364 8 Mycoplasma_phage(33.33%) protease NA
DBSCAN-SWA_129 1650896 : 1653343 2 Emiliania_huxleyi_virus(50.0%) NA NA
DBSCAN-SWA_130 1659870 : 1662957 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_131 1675484 : 1680241 3 Ralstonia_phage(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage