CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028584	Pseudomonas aeruginosa strain WCHPA075019 chromosome, complete genome	1 crisprs	csa3,RT,WYL,DEDDh,cas3,DinG	0	1	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028584_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028584_1

2091029-2091130

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP028584_1

>merge|NZ_CP028584|1|2091029-2091130|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP028584|1|1|2091029-2091130|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028584.1\|WP_003116401.1\|2098584_2099484_-\|EamA/RhaT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP028584.1\|WP_003091540.1\|2092423_2092690_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP028584.1\|WP_003114812.1\|2094866_2095430_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP028584.1\|WP_003091534.1\|2096245_2097175_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP028584.1\|WP_003116397.1\|2081365_2082223_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP028584.1\|WP_003114814.1\|2097838_2098480_+\|FMN-dependent-NADH-azoreductase-3	unknown	unknown	gnl\|CDD\|224103
NZ_CP028584.1\|WP_016263233.1\|2088317_2090117_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP028584.1\|WP_016263234.1\|2091266_2092391_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP028584.1\|WP_003091533.1\|2097374_2097692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028584.1\|WP_003119699.1\|2095411_2096239_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP028584.1\|WP_003091547.1\|2086264_2086576_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP028584.1\|WP_016263232.1\|2086572_2088228_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP028584.1\|WP_003109184.1\|2092971_2094804_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP028584.1\|WP_003109182.1\|2090848_2091007_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP028584.1\|WP_003091551.1\|2084674_2084896_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP028584.1\|WP_003114810.1\|2090113_2090740_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP028584.1\|WP_003114807.1\|2083170_2084532_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028584.1\|WP_003114808.1\|2085189_2086047_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP028584.1\|WP_003109191.1\|2099493_2099829_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP028584.1\|WP_003114806.1\|2082363_2083167_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409

Protein	Function_ID	Function_description	E-value
NZ_CP028584.1\|WP_003116401.1\|2098584_2099484_-\|EamA/RhaT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP028584.1\|WP_003091540.1\|2092423_2092690_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP028584.1\|WP_003114812.1\|2094866_2095430_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP028584.1\|WP_003091534.1\|2096245_2097175_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP028584.1\|WP_003116397.1\|2081365_2082223_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP028584.1\|WP_016263233.1\|2088317_2090117_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP028584.1\|WP_016263234.1\|2091266_2092391_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP028584.1\|WP_003114814.1\|2097838_2098480_+\|FMN-dependent-NADH-azoreductase-3	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP028584.1\|WP_003091547.1\|2086264_2086576_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP028584.1\|WP_016263232.1\|2086572_2088228_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP028584.1\|WP_003109184.1\|2092971_2094804_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP028584.1\|WP_003109182.1\|2090848_2091007_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP028584.1\|WP_003091551.1\|2084674_2084896_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP028584.1\|WP_003114810.1\|2090113_2090740_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP028584.1\|WP_003119699.1\|2095411_2096239_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.13956e-42
NZ_CP028584.1\|WP_003114808.1\|2085189_2086047_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
NZ_CP028584.1\|WP_003109191.1\|2099493_2099829_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP028584.1\|WP_003114806.1\|2082363_2083167_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	6.05055e-101

>NZ_CP028584.1|WP_003109182.1|2090848_2091007_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP028584.1|WP_003114810.1|2090113_2090740_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP028584.1|WP_016263233.1|2088317_2090117_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPDFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP028584.1|WP_016263232.1|2086572_2088228_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADSLTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP028584.1|WP_003091547.1|2086264_2086576_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP028584.1|WP_003114808.1|2085189_2086047_+|glycine/betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP028584.1|WP_003091551.1|2084674_2084896_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP028584.1|WP_003114807.1|2083170_2084532_-|hypothetical-protein
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP028584.1|WP_003114806.1|2082363_2083167_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP028584.1|WP_003116397.1|2081365_2082223_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP028584.1|WP_016263234.1|2091266_2092391_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEGEGLQRLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP028584.1|WP_003091540.1|2092423_2092690_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP028584.1|WP_003109184.1|2092971_2094804_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP028584.1|WP_003114812.1|2094866_2095430_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP028584.1|WP_003119699.1|2095411_2096239_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGHYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP028584.1|WP_003091534.1|2096245_2097175_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP028584.1|WP_003091533.1|2097374_2097692_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP028584.1|WP_003114814.1|2097838_2098480_+|FMN-dependent-NADH-azoreductase-3
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP028584.1|WP_003116401.1|2098584_2099484_-|EamA/RhaT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP028584.1|WP_003109191.1|2099493_2099829_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028584_1	1.1\|2091054\|52\|NZ_CP028584\|CRISPRCasFinder	2091054-2091105	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 1.1|2091054|52|NZ_CP028584|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

631904 : 714369

Pseudomonas_phage(39.53%)

tail,tRNA,plate,transposase,integrase

attL 696985:696999|attR 717357:717371

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611796.1\|631904_633281_+\|transposase	IS30 family transposase ISPa37	W5R8L2	Staphylococcus_phage	1.1e-42	33.7
WP_019725805.1\|635314_639052_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|639158_641012_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_019725806.1\|641091_643086_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|643168_643618_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|643687_643903_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003129196.1\|644103_645129_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|645207_645777_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003099587.1\|645860_646214_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003142783.1\|646204_646747_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_019725807.1\|646719_647952_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	4.5e-77	43.1
WP_003085071.1\|647995_648502_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|648595_650149_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|650145_651417_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|651517_653440_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|653718_654051_-	thiosulfate sulfurtransferase	NA	NA	NA	NA
WP_003113213.1\|654094_654946_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|654945_655326_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_019725808.1\|655362_656169_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003117956.1\|656284_657271_-	4-hydroxythreonine-4-phosphate dehydrogenase 1	NA	NA	NA	NA
WP_003109024.1\|657267_658560_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003113209.1\|658540_661315_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_023435438.1\|661447_663160_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.0e-281	82.0
WP_071534333.1\|663346_663559_+	hypothetical protein	NA	NA	NA	NA
WP_010793494.1\|664431_665448_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
WP_010793493.1\|665444_666119_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_019725809.1\|666120_666879_+	molecular chaperone DjlA	NA	NA	NA	NA
WP_019725810.1\|666879_667941_-	DUF3530 domain-containing protein	NA	NA	NA	NA
WP_019725811.1\|668092_670486_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|670531_671164_+	DNA-binding response regulator	NA	NA	NA	NA
WP_003085106.1\|671292_672327_+	ABC transporter	NA	NA	NA	NA
WP_003085109.1\|672560_673670_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|673725_674772_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003113206.1\|674886_676134_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|676239_677070_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|677193_677868_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003113205.1\|677867_678686_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003113204.1\|678758_680237_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|680555_680870_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|680969_681740_-	transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|682197_682398_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|682445_682805_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|683168_683618_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113200.1\|683639_684155_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003118909.1\|684151_684709_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003085143.1\|684861_685188_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003118910.1\|685184_686072_+	bacteriophage protein	S4TNY7	Salmonella_phage	1.2e-87	59.8
WP_003118911.1\|686064_686598_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003123931.1\|686599_688675_+	bacteriophage protein	Q9ZXK6	Pseudomonas_virus	1.3e-198	50.5
WP_003118913.1\|688671_689130_+	hypothetical protein	NA	NA	NA	NA
WP_003118914.1\|689172_690333_+\|tail	tail protein	Q38068	Phage_PS17	1.2e-188	83.7
WP_003085175.1\|690345_690849_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|690863_691208_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003118915.1\|691377_693615_+	hypothetical protein	NA	NA	NA	NA
WP_003118916.1\|693624_694497_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.1e-74	51.4
WP_003101635.1\|694471_694678_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003109053.1\|694735_695725_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
WP_003118917.1\|695757_696387_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	7.1e-87	78.0
WP_003118918.1\|696383_696746_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
WP_003118919.1\|696742_697000_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
696985:696999	attL	NA	NA	NA	NA
WP_003118920.1\|697014_697245_+	hypothetical protein	NA	NA	NA	NA
WP_003113190.1\|697315_697810_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003113189.1\|697821_698169_+	hypothetical protein	NA	NA	NA	NA
WP_003113188.1\|698198_698453_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_003113187.1\|698499_700335_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
WP_003113186.1\|700327_700669_+	hypothetical protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_010793484.1\|700676_701372_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-69	49.8
WP_003113184.1\|701374_702145_+	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003113183.1\|702199_702802_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
WP_023081593.1\|702860_706475_+	DUF1983 domain-containing protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.7
WP_003118927.1\|706710_707499_+	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|707522_708614_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_003113180.1\|708613_708949_+	hypothetical protein	NA	NA	NA	NA
WP_010895513.1\|708929_709160_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	3.3e-18	62.7
WP_003113178.1\|709255_710308_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	4.6e-62	52.2
WP_003113177.1\|710307_710610_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_003113176.1\|710606_710837_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	8.2e-25	71.6
WP_108240747.1\|711433_712636_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.2e-88	45.5
WP_108240931.1\|712784_713546_-	hypothetical protein	NA	NA	NA	NA
WP_031690312.1\|714168_714369_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.5e-14	55.4
717357:717371	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1668998 : 1678026

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1668998_1669634_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003115226.1\|1669679_1670573_+	lipoprotein NlpD/LppB	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1670677_1671682_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003119354.1\|1672107_1672431_-	Ferredoxin 1	NA	NA	NA	NA
WP_003113873.1\|1672497_1675065_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_071536043.1\|1675044_1675209_+	TolB-like translocation protein	NA	NA	NA	NA
WP_003117491.1\|1675190_1676198_-	TolB-like translocation protein	NA	NA	NA	NA
WP_003092262.1\|1676345_1676852_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1676985_1678026_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_3

2913607 : 2920501

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|2913607_2914888_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003113366.1\|2914889_2916287_+	siroheme synthase	NA	NA	NA	NA
WP_003097628.1\|2916291_2917266_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|2917353_2918337_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003090393.1\|2918333_2918669_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003090391.1\|2918665_2918971_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2918970_2919330_-	sulfurtransferase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003097619.1\|2919326_2919722_-	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.5e-47	71.3
WP_003090386.1\|2919832_2920501_-	BAX inhibitor (BI)-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_4

5199168 : 5206660

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019725833.1\|5199168_5200152_-	recombinase	Q56VN7	Pseudomonas_phage	1.8e-92	52.3
WP_003115206.1\|5200151_5201444_-	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
WP_019725831.1\|5201702_5202965_-	hypothetical protein	Q56VN9	Pseudomonas_phage	2.2e-119	57.0
WP_019725830.1\|5202966_5203317_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	2.4e-20	42.0
WP_019725829.1\|5203326_5204283_-	hypothetical protein	NA	NA	NA	NA
WP_019725828.1\|5204599_5204818_-	hypothetical protein	NA	NA	NA	NA
WP_003124954.1\|5204831_5205083_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|5205094_5205187_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_019725827.1\|5205203_5205638_-	hypothetical protein	Q56VP5	Pseudomonas_phage	6.5e-63	97.2
WP_033072802.1\|5205772_5206150_-	hypothetical protein	Q56VP6	Pseudomonas_phage	2.4e-58	94.4
WP_023123415.1\|5206153_5206444_-	hypothetical protein	Q56VP7	Pseudomonas_phage	5.6e-55	96.9
WP_003112698.1\|5206447_5206660_-	hypothetical protein	Q56VP8	Pseudomonas_phage	7.6e-33	95.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage