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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028892 Vibrio cholerae strain Sa5Y chromosome 1, complete sequence 1 crisprs RT,cas3,DEDDh,DinG,csx1,csa3 0 1 4 0
NZ_CP028893 Vibrio cholerae strain Sa5Y chromosome 2, complete sequence 0 crisprs cas9,Cas9_archaeal,DEDDh,csa3,cas3 0 0 0 0

Results visualization

1. NZ_CP028892
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028892_1 2579760-2580004 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP028892_1 1.1|2579810|39|NZ_CP028892|PILER-CR 2579810-2579848 39 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35428-35466 4 0.897
NZ_CP028892_1 1.1|2579810|39|NZ_CP028892|PILER-CR 2579810-2579848 39 NC_049942 Escherichia phage JLK-2012, complete sequence 23522-23560 5 0.872

1. spacer 1.1|2579810|39|NZ_CP028892|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.897

agtaggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatc	Protospacer
********.***************.*********** *.

2. spacer 1.1|2579810|39|NZ_CP028892|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 5, identity: 0.872

agtaggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatat	Protospacer
* .*********************.***********. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 652419 : 658912 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_2 1511262 : 1535307 15 Vibrio_phage(84.62%) NA NA
DBSCAN-SWA_3 2280483 : 2287676 9 Anguillid_herpesvirus(16.67%) NA NA
DBSCAN-SWA_4 2519142 : 2526367 6 uncultured_Mediterranean_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage