CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028947	Serratia marcescens strain AR_0130 chromosome, complete genome	2 crisprs	DEDDh,DinG,csa3,cas3,WYL	0	3	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028947_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028947_1

352930-353012

Orphan

Consensus_repeat	Method
CCGCCATCAACGCCAAGACCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028947_1

>merge|NZ_CP028947|1|352930-353012|CRISPRCasFinder
CCGCCATCAACGCCAAGACCGGCACGCTGTTCTTCGGCAACACCGTCAATAACTCGGTGACCGCCATCGACGCCAAGACCGGC

>NZ_CP028947|1|1|352930-353012|CRISPRCasFinder
CCGCCATCAACGCCAAGACCGGC	ACGCTGTTCTTCGGCAACACCGTCAATAACTCGGTGA
CCGCCATCGACGCCAAGACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028947.1\|WP_047025054.1\|348879_350085_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|184977
NZ_CP028947.1\|WP_108680069.1\|356066_356810_-\|transcriptional-regulator-CadC	unknown	unknown	gnl\|CDD\|226233
NZ_CP028947.1\|WP_004930014.1\|351724_352585_+\|isochorismatase	unknown	unknown	gnl\|CDD\|238495
NZ_CP028947.1\|WP_033644173.1\|343038_343245_+\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081
NZ_CP028947.1\|WP_089192458.1\|357860_358403_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP028947.1\|WP_108680063.1\|334709_337619_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|380463
NZ_CP028947.1\|WP_033652617.1\|350092_351721_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP028947.1\|WP_108680072.1\|361901_362705_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367583
NZ_CP028947.1\|WP_158524428.1\|362858_363314_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185187
NZ_CP028947.1\|WP_089192457.1\|357225_357768_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP028947.1\|WP_108680068.1\|355492_355984_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028947.1\|WP_108680066.1\|343277_347222_+\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
NZ_CP028947.1\|WP_089192451.1\|347398_348667_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP028947.1\|WP_108680064.1\|339119_341402_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NZ_CP028947.1\|WP_108680065.1\|341684_343064_+\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NZ_CP028947.1\|WP_108680071.1\|361004_361760_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185185
NZ_CP028947.1\|WP_108680070.1\|358449_360990_+\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185184
NZ_CP028947.1\|WP_072626550.1\|354723_355512_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP028947.1\|WP_108680067.1\|353830_354451_+\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|182124
NZ_CP028947.1\|WP_069100932.1\|337666_338899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225926

Protein	Function_ID	Function_description	E-value
NZ_CP028947.1\|WP_047025054.1\|348879_350085_+\|isochorismate-synthase	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	2.32031e-175
NZ_CP028947.1\|WP_108680069.1\|356066_356810_-\|transcriptional-regulator-CadC	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	2.77027e-13
NZ_CP028947.1\|WP_004930014.1\|351724_352585_+\|isochorismatase	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	9.9039e-126
NZ_CP028947.1\|WP_033644173.1\|343038_343245_+\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	6.4782e-21
NZ_CP028947.1\|WP_089192458.1\|357860_358403_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	5.76429e-16
NZ_CP028947.1\|WP_108680063.1\|334709_337619_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|380463	cd19540, LCL_NRPS-like, LCL-type Condensation domain of nonribosomal peptide synthetases (NRPSs) and similar domains. LCL-type Condensation (C) domains catalyze peptide bond formation between two L-amino acids, ((L)C(L)). C-domains of NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). In addition to the LCL-type, there are various subtypes of C-domains such as the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. An HHxx[SAG]DGxSx(6)[ED] motif is characteristic of LCL-type C-domains.	1.77825e-58
NZ_CP028947.1\|WP_033652617.1\|350092_351721_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP028947.1\|WP_108680072.1\|361901_362705_+\|hypothetical-protein	gnl\|CDD\|367583	pfam03628, PapG_C, PapG chaperone-binding domain. PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus and chaperone binding C-terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD.	7.53281e-05
NZ_CP028947.1\|WP_158524428.1\|362858_363314_+\|fimbrial-protein	gnl\|CDD\|185187	PRK15287, PRK15287, fimbrial minor subunit StfF.	4.08079e-23
NZ_CP028947.1\|WP_089192457.1\|357225_357768_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.34557e-27
NZ_CP028947.1\|WP_108680066.1\|343277_347222_+\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NZ_CP028947.1\|WP_089192451.1\|347398_348667_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP028947.1\|WP_108680064.1\|339119_341402_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NZ_CP028947.1\|WP_108680065.1\|341684_343064_+\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NZ_CP028947.1\|WP_108680071.1\|361004_361760_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185185	PRK15285, PRK15285, fimbrial chaperone StfD.	3.39299e-83
NZ_CP028947.1\|WP_108680070.1\|358449_360990_+\|outer-membrane-usher-protein	gnl\|CDD\|185184	PRK15284, PRK15284, putative fimbrial outer membrane usher protein StfC; Provisional.	0
NZ_CP028947.1\|WP_072626550.1\|354723_355512_+\|hypothetical-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	2.11071e-16
NZ_CP028947.1\|WP_108680067.1\|353830_354451_+\|DUF2238-domain-containing-protein	gnl\|CDD\|182124	PRK09867, PRK09867, hypothetical protein; Provisional.	1.48041e-112
NZ_CP028947.1\|WP_069100932.1\|337666_338899_+\|hypothetical-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.74169e-05

>NZ_CP028947.1|WP_004930014.1|351724_352585_+|isochorismatase
MAIPKLNDYALPTADELPQNKVTWQVEPQRAALLIHDMQQYFLNFWGEDSALIKQVVENIANLRRYCKQQGIPVFYTAQPNQQSDEDRALLNDMWGPGLNKHPEQQAVTAALAPDEDDTVLVKWRYSAFHRSPLQEILQESGRDQLIICGVYAHIGCLTTAIDAFMRNIQPFMVADGLADFSRDEHLMALRYTAGRCGRVVTTASLLPAAGIASIDALRQQILPLLDEDSEDMGNDENLIDYGLDSVRIMELATRWRKIRGDIDFIALARNPTIDSWWALLSEEKA
>NZ_CP028947.1|WP_033652617.1|350092_351721_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MSIAFTPWPAEFASRYRERGYWIDKPLTEILDRQANNDAPAIIDAQGSLTYRELQQRSDRLAAALLRRGVKSGDTALVQLGNVAEFYIVFFALLKIGVAPVNALFSHQRSELNAYAEQIKPALLIADRRHALFADDQFLNAFRDAHPSLRAVALRSQPEGELALAAWLEEASDGFVAQPSAADRVAFFQLSGGSTGTPKLIPRTHNDYYYSIRRSVEICRFDAQTRYLCALPVAHNYPMSSPGVLGVFYGAGLVVFAADPDAAQCFRLIEQHQINVTALVPPAVTLWLQAIEEWGGNAQLASLKLLQVGGAKLGETLAARIQNEIGCQLQQVFGMAEGLVNYTRLDDDERHILTTQGRPMSPDDEVWVADDDGNPLPAGEIGRLMTRGPYTFRGYYQSPAHNADAFDADGFYCSGDLISISEDGYITVQGRQKDQINRGGEKIAAEEIENLLLRHSDVINAALVSMPDALMGEKSCAYIIANAPLKPVVLRRHLREQGVADFKLPDRFIQVDSLPLTPVGKVDKKRLREQLDAQLQTQAQGD
>NZ_CP028947.1|WP_047025054.1|348879_350085_+|isochorismate-synthase
MVTAVNDINRKEMQEREEHRFAADFSPASGFFFTSPYRSLTTTGCFSRIRLPAADGADLNGEFQRRVRQAFAEARQAGIKKPLLCGAIPFDTRQPSALFVPQQSRWFDRAAFMAGVRPSANGPELAGVTELPPQQTFMNMVSDAVAAMKAGELDKVVLSRLLEIETRQPVDRHALMARVIAQNPHGFHFHVPLEQGALLGASPELLLRQDGGRFYSNPLAGSARREADPQRDREVGERLMASAKDRHEHRIVTESMRDVLAGRCRYLNVPQTPELLTTTTLWHLSTPIDGEAASPDENALSLACLLHPTPALCGMPTAEAHALIGKLEPFDRGLFGGIVGWCDDEGNGEWVVTIRCGTVDGNRVRLFAGAGIVEDSSPESEWHETGTKLSTILRAFGMNQG
>NZ_CP028947.1|WP_089192451.1|347398_348667_+|enterobactin-transporter-EntS
MSSKPSILLDFSLLKTHRAFRAVFCARFISIVALGLMAIAIPVQLQALTGSTLQVGLAVTLAGGGMFAGLLMGGVLADRYERRRLILFARSTCGIGFVGLCLNALLPSPSLAAIYLLAVWDGFFGAVGVTALLAATPALVGRENIVQAGAISMLTVRFGSILSPAIGGLVIAHMGIAWNYGLAAFGTLLTLLPLLSLPQLMPPPQPREHPLRALAGGFAFLFQNKVIGMVALIGALLTMASAVRVLYPAMAESWRIDAAHLGYMYAAVPLGATIGAFTSGRVAHVARPGWVMLLTAIAAFASIGLFGLMPWYSLALLCLVAFGYLSALNSLLQYGLIQGLTPDNFLGRINGLWTAQNVVGDALGALLLGAMGAFMLPAMSASGFGFGAALLGILLLFAMTGLRQVTLHKPEPQNEPQPASEK
>NZ_CP028947.1|WP_108680066.1|343277_347222_+|enterobactin-synthase-subunit-F
MSHTPNSLSGPALAGEWPLVAAQPGIWVADQISPHRNAYAVAHAIELNGPVAVEPLLQAITQGLGEVDMLRLRFAERDGVPVQWLDDSLAVHAPELVDLTTSPDPEAAARALMDIDLASDLRAGSGAPLYRHVVMRLADDRWFWYQRYHHLLVDGFSFTAIARRVAAIYTHLCRGDALEPTPFTAFSDVVAEYQAYRQAPAWQRDADFWREKARQLPPPATICPQPLAGQTPTPRIHRLEQRCDPQAFAELVQCGAQQKLNAADMAVALVALWVSRLSGQPSFSAGFIFMRRTGSAALCAAGPVINVLPMEMHLEPQATLYEAAARISRELKTVRRHQRYDAEQVQRDLGRIGDGEPLYGTVFNFKMFDYQLDFAGIEGITHDLASGPVRDLEIALFIDEHHQLKVELLANAERYSCQELQAHLQRLPLLLAQFAAQATLPIGEADMLTADDRALLARINDTAHPVPATTLSQLLAQQAQATPDAPALADAHFSFTYRETREQVTALARQLVAQGVRPGDIVAVALPRSVFLSLALMAIVEAGAAYLPLDTGYPDERLAMMLEDAAPRLLITHPAQQARFADKGDMLLYDAPLAADHAAGVAIAGPTPDHAAYIIFTSGSTGRPKGVLVGHQAIVNRLLWMQHQYPLGADDAVLQKTPCSFDVSVWEFFWPLMVGARLVMAPPEAHRDPQQLQQLIAQHRITTMHFVPSMLAAFVAALDDDVAVASCAALRQVFCSGEALPAELCRLWQSRTAVPLHNLYGPTEAAVDVTWHPAYGEALAKVTGANVPIGLPVWNTGLRILDARLRPVPPGVAGDLYLTGVQLAHGYLGRADLTASRFVADPFGEGGRMYRTGDVARWLPDGAVEYLGRSDDQLKIRGQRIELSEIDHALLSLPGVRQAVTHALVLQGTPVDAGGDARQLVGYLVMQPGASWDAEALRAALADRLPPHMVPVALVEMRDLPLSANGKLDRKALPQPQGGERKAGRPPQAGLESEIAAVFARLLQREQVFADDDFFALGGHSLLAMRLAAELRRDLGKAVSVGQVMVASRVEQLAALLAEDRTQEEADRSGFDSVLPLRVTEGPTLFCLHPASGFSWQFSVLPRYLDQHWSLVGIQSPRPDGPLALSEDMDQVVEAHLQTVLQVQPHGPYHFIGYSLGGTLAQGIAARLQARGEQVAFLGLLDTYPPETQNWDVMLDDNVLKEVQREREQFLAVSQDTLDPALGETRTLMFDNIEANYADSVRLLSHTRTARFHGQATLFVAKRTLQAGMDVQQTWSQYVDALQAHELDCAHVDIVSPASFKVLGPLLNRILRTL
>NZ_CP028947.1|WP_033644173.1|343038_343245_+|MbtH-family-protein
MESLNPFDDQQQRSLVLRNVQQQYSLWPDFRAIPPDWTIVFGPAARTECAEWLEQHWQDILPVAARKA
>NZ_CP028947.1|WP_108680065.1|341684_343064_+|enterochelin-esterase
MNTELESESSRLLASSNAGSPGWWLTVARRGTPWVEPAGNGRWRTTFFWRDPQGCELTSAYRRVWININCLTDHHQPNPPQSLLRLAGTDVWYWQTELNGAWRGSYCFIPCFDERPPAFSDDDAHANMHNLRHWWHQVFACATPDLLNPYRSWQSTSGHSVSGLHMPDAPPQPVWRSFDEYEIASGRCTPPLPARLQRHTWQSERLGNSRDVWIYTTGDSKPAERPLAILLDGQFWAKQMPVWAPLMQLTREGALPEAVYVLIDIIDLPHRARELTCKDDFWLAVQEELMPQLAEWAPHSDNPAETVVAGQSFGGLASLYAGLRWPQRFGAVITQSGSYWWPRRDMLQLPSIPDDACWLMQQVERHGLGNHGALKVFMEAGTQEKLVHQVSGQMAARLSEAGHRVHYRVVEGGHDALCWRSGLTDGLQAVWASAFATAYPASVTTAAQGTQDGKPESVR
>NZ_CP028947.1|WP_108680064.1|339119_341402_-|TonB-dependent-siderophore-receptor
MKSKLSRYSLATLIGLGLGASAFANAAQQTDTPTTEENSGAADKKPRGEDTIVVTAARQNLQAPGVSTITADEIKKRPPARDISELIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPASSRNSVRQGWRGERDSRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKAGDALHGSLNGYFNVPQHKQEGATKRTDFSLSGPLSDSLSFRLFGGYSKTQADAWDINESHKSERVGAYANSVPAGREGVVDKNIDALLHWDFAHLQSLEFEYAYGRQGNLYAGDTQNTNTNALVQSNYGKETNRIYRETFGLTHRGAWDNGVSTNNYVQFERTRNTRLNEGLAGGTEGIFDTKNTGFGTTKLDDFLAHSEVSVPFELGVAQTATLGTEWSQQRMKDGTSTSQTLMGGTIPGMTTGTRSPYASAHIFSLFAEDNIELTDTTMLTPGLRYDLHSESGNNWSPALNLSQELGDYFTLKMGIARSYKAPTLFQTNGNYLLYSKGQGCAGSDTRNGCYLLGNDDLKAETSVNKEIGLEFHNDGWLAGVTYFRNDYHNKIEAGNSRIATSSTGTAVYQWENVPKAVVQGLEGSLNVPVSETVTWSNNATYMIENKNKTTGDYLSVIPKFTVNSTLSWQATQDLSLQSTLTWYGRQKPKKYNYQGKPATGGETREVSPYAVVGASATYDLTKNVSLTAGIDNLFDKRQFRAGNAQNVGDPNTGAINIAGAGAATYNEPGRTYYMSINTHF
>NZ_CP028947.1|WP_069100932.1|337666_338899_+|hypothetical-protein
MSGTLATPRALLSLLVAASLVVAGAAQADDAGIKPQDIKRQALSSAVVEMAYSTSQQALFVSAPDWKEEARSRVLRLDPNTLAIKAEIPLKVKGFGVALNDAGNRLYLTQAFNGEVGVVDTTTNHALGSIKLLDKAVLEQAYKQAGISGKRLDFLLAELKKFKITEDYLYRIREIKYDAQSGRLFLPGLGFGVDSVLYVVDTKAGKLEKVIPGFGYNAVGITLDEKGRRVFVSNMQGQVITLNADTLAIAATHEVQADQLLNLVYDPASNRLLGVDQGIDRDDYRNHHLGRDYVKRSSGHRVFALDADSGKVLASELTDEVPIGLLLDERSQRLYVANRKGVRVDHGAGTLTVFDAKTLKRLQTVDLPPHPNSLALDPKGDALFVTVKNDGAATKAGKAESVVRIQLHTK
>NZ_CP028947.1|WP_108680063.1|334709_337619_+|non-ribosomal-peptide-synthetase
MIGDFDSILSDEEAQRLESAFQALGAGAANGERPVSEAEERAWFAHLQQGDARGQRALAWRLTGEVDIAQLTAALQALVRETPGVNVHYVFDDENGLIKRAADSAPLPVSLRQVADEQHAMGCLLQAQAAPFELESEAPLRFLLLLTPGGDVMLGVVLHDILAETLPWRHLPAMVSARYNGDAMPLPFAAEPVELPEIPEPQLPWARQAVSLQDYRSPAQRAEALPPVGGRVVTRIARSLLPANDAPRALLAAVAARFAEFIAAQAGGQAVQLCVPAAETAECVGLELGLTAAPLMRLTVRHGDGDAGQRLLAQTVAEQPDPQRAQLLVAWRDDLAAEWRLEGVHAERLLLPPLHTPFELALLLSLPEAETLTLELVTDPRLSPHAAPFLLEQFSAFLAGQRIAVALPAAEAVSPAMAAPAANGDADESIAPLILQAFREALAAPEMTLDEDFFDRGGHSLVATRVIGRLLSLHQIEININDLFSHPTARGLAGYAKRLNVAQPNAAPTTADDHDRAQAPLSLAQESLWKVYEAFGHDEIFNLPFSLRFFDEVDETALRQAFIDVMTRHTVLRSRFVEQQGEVAQVVVPAAELSDYQWFRFSQETPAGNAAALLANAGQHRFDLAAELPLRVTLLRDADNGQQLLSLLFHHVVLDEWSLNLMMDELGVAYRHRVVGQAPQWSGQPPQFHTFARQQRASGVQQQHLDYWLDALRGAPVGQPIFRQEPSTHPAVPAPADVNGGWLEFEVDPAVAEGLYQLARRNNASLFNVVYAGITSALRLLGGPADLLVGTSTSGRNDAEFFDTVGYFTTVVVHRVRFDEGLTVAGLVSQVKNTINGSLPYTDIPIDLVEEGLFGVDADRKNHMFEVFIQIHSRIKLNGEFRLQDGRAIAYRQVEPEKAESLLGLQFEVMEDDLAGKKSLRVMMTYRQDHYSREQATLIADGVQHVFTQFAQHIAGDIALAALPPGPQA
>NZ_CP028947.1|WP_108680067.1|353830_354451_+|DUF2238-domain-containing-protein
MPASRTPRLLSVITLLLLAALIHSGISPYDRTTWLLEVAPVLIVLPLLWLTHRRYPLTPLLYTLIFFHALILIFGGMYSYARVPLGFEVQQWLDLGRNPYDKLGHFFQGLVPALAAREILLRGGYVQGRKMLGFVVCCIALAISAVYELIEWWAALALGQGADEFLGTQGDPWDTQSDMFCALLGAIAGQWLFGGWQDRQLRRLKA
>NZ_CP028947.1|WP_072626550.1|354723_355512_+|hypothetical-protein
MRYIINNKIKYHEDRSELVDLNAELPPQPLTATLNRLLSALVRNNNLVVSRDTLLTQVWEAHGQVASGNNLNNTISILRKMFAAMGEDDIIVTLPRQGFMFTAASLKTTDSLAESLPEMPILAAAENPLPTRPLRVQRFKRFGLAALLLLAAGSGILAWQETGYPSASLMTVGKIGSCNVQFVTSYHNVGPGEIDLNHLKNMLQEKKTATCGEPATLLYYDSQALVPNASGRVRASYFYYCPQEAMTSGKVQCENYYESRGL
>NZ_CP028947.1|WP_108680068.1|355492_355984_+|hypothetical-protein
MKAGVYSSVCRHGYAIAAAVAVLVCSVSAYFLFFKPQIPECTAVERFVNQYEGKMLERTLLISVVPDGVRYATILFNGSVFYDGKRYIIERSLGIDYRKWGGNYEFRVRENIKKPPDTLQNEALNRSLPMEGQTIHLRIERMDARHYLFVDNHAPYYVCVTSS
>NZ_CP028947.1|WP_108680069.1|356066_356810_-|transcriptional-regulator-CadC
MIFIINEDILFNEDEGTLSHIDNASNKIALLKPTGRLLSLFIRNNDKLLLRERLLNDVWVEHGLKASNNNLNNYVSGLRKSLAQFGVEDIIVTYPRQGFKFNAASIQQMDIKSSEINNNDYSETEIASTPPPARTPNFRRSVQRLIMIMAACLVPFAAIVLYQNSTRISVYPLGNEQNCQIYTMRLGSGELANIKREIRQAGFDCQYRADVYYYDNIRNEGAEKDEQWLTYCPRASNSPCINNYIKK
>NZ_CP028947.1|WP_089192457.1|357225_357768_+|type-1-fimbrial-protein
MKLNKIMLAAVMALGVSSLAHAADQGHGKVTFSGSIIDAPCSIAPESLDQTVELGAISNVALKNGGKSTPRNFQIKLENCELTTKNPGKNNTVALTFSGSASEADSKLLGITGTAKGAGIAITDGAGTNIELGKPSKARELQSGANTLSFAAYLQGSSASTAVIVPGEFQSVADFTLAYQ
>NZ_CP028947.1|WP_089192458.1|357860_358403_+|type-1-fimbrial-protein
MNEQIKKIGAFCLLLAPFFISQQAMSAVQGEGRVNMQGAIIDTACAIATESREQIIDMDIMPVSDIARDGRGRSVPFSIELVNCVLERADKNLPDWKQFRITFDGNSDGEMFGISGNASGIALKITDADGNIATPGKSLPSVNILPGNYRLNYAMTLISNQRPLKAGDYFSSVRFKMDYY
>NZ_CP028947.1|WP_108680070.1|358449_360990_+|outer-membrane-usher-protein
MMFLPAGKPFRLHILSACVALVLGSLASKAGAVEDIQFNTDVLDVNDRKNIDLSQFSRGGYIMPGQYGMVVHVNKIDLPEQPVAFYAPDDDAGGSRACLSPELVAQLGIRDEALKKLTWWREGACLDEVSLPGMEVRGELATSALYLSIPQAYLDYVSEDWDPPSRWDEGVPGVLLDYNINAQTQHQLQAGTRGYSVSGNGTAGANLGAWRLRADWQGNLNHQTGSGQSTDKQLDWSRYYAYRAIPALRAKLTLGEDYLDSGLFDSFRFGGVSLRSDDNMLPPNLRGYAPEVSGVAKSNAKVTVSQQGRVLYETTVAAGPFRIQDLNDAVSGDLDVRVEEQDGSVQEFKMSTASIPYLTRPGSLRYKLAAGKPSDMDHRYQGPMFGTGEFSWGVSNGWSLFGGALLGGDYNAAALGIGRDLMLLGALSFDVTQSRAKLPYNGETLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQNFMSMSEYLDARQYGQRFGNSKEMYTITYNQQLRDIGLSAYLNVSHQTYWDRPANDRYSLTMSRYFDLGDYKNLSLSLSAYRNRYNETNDDGMYLSLSLPWGNGATLSYNATLNRDDSTHRVGYYDRIDDRSNYQISAGGSRSGANLSGYYNRDGDLARMSANASYQQDRYSAIGGSLQGGMTLTAEGGALHRSNMAGGTRLLLDTEGVAGVPVRGYGSTMATNRWGKAVVVDVNSYYRNKASIDLDKLGDNAEATTSVVQATLTEGAIGYRKFAVIAGEKAMAVIKLADGGEPPFGAMVLNARKQETGIVNDGGSVYLSGINAGDRMTVRWNGAEQCEVQMPTPLPAEMLTANLLLPCRALSAGSGGDEH
>NZ_CP028947.1|WP_108680071.1|361004_361760_+|fimbria/pilus-periplasmic-chaperone
MMSKRNAIGLLATTSLLACALAPTAQAAIALDRTRVIFDGGVQSVSLSVSNQNKQLPYLAQGWLEDEQGNKIQSPLTVLPPVQRIEPGKPSQVKIQALPAAKMLPQDRETLYYFNLREIPPKSNKPNSLQIALQTRIKLFYRPAAIAPERNAAPWQEQLTLSKQGDKYVVNNPTPYYVTLVDAASRKGVEGAKGFEPLMVPPKGSLPLTVSAGSVGNSPVLTYINDYGGRPQLSFSCAGAVCKVVPEKKAS
>NZ_CP028947.1|WP_108680072.1|361901_362705_+|hypothetical-protein
MLKRMAFPFFIYFYSVNVFSAAWEMKTEYRPINATYGHFVAKIIAWDTEDKTPNPLYGCNSGQEYCYLAFVNGNTPFMNKVYFSGVTTSKTLGELGKKFIQNGLLNREYRSKDYDYPNQPHCIYFGYNTPTGNSSWGVIRFPGGEQCRVPEIVPNVCELREPLVELDHGMLRAEVINGSTAEAQLTVACTFNFKVRIMSSDRSGTVYFNDKKQFRSELKLDGVNVGDGLLITATPAGKTLTLTSTLAGYDGSVGEFQGAKSIIISLP
>NZ_CP028947.1|WP_158524428.1|362858_363314_+|fimbrial-protein
MMACLLTNMPAWAATTVSVRVTVLAPLPCVINGNQPIEVNFGDEVMTTRVNGENYRTLVDYSVTCDKPGKNGMRLLIAGTGAGFDGKLLQTNVGGLGIAFLNNGARIALNSWQNFTFPVLPKLEAVPVKQANATLPTGEFTASATLRVDYQ

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Crispr_ID: NZ_CP028947_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028947_2

481835-482044

Orphan

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAAT	PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAATT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP028947_2

>merge|NZ_CP028947|2|481835-482044|PILER-CR,CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAACGCACGTCGTTTGACAGATCCACCAGCAACGTGTGCACTGCCGTACAGGCAGCTTAGAAATTGCTCAATAAGCCAAGACAAAACGCCTTGCGGTGCACTGCCGTATAGGCAGCTTAGAAATTCGGCGGCCGGCCGCGAGCGTCTTGCCATCAGTTCACTGCCGTCCAGGCAGTTTGAATAGT

>NZ_CP028947|2|1|481835-481983|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAAC	GCACGTCGTTTGACAGATCCACCAGCAACGT
GTGCACTGCCGTACAGGCAGCTTAGAAAT	TGCTCAATAAGCCAAGACAAAACGCCTTGCG
GTGCACTGCCGTATAGGCAGCTTAGAAAT

>NZ_CP028947|2|2|481835-482044|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAACG	CACGTCGTTTGACAGATCCACCAGCAACGT
GTGCACTGCCGTACAGGCAGCTTAGAAATT	GCTCAATAAGCCAAGACAAAACGCCTTGCG
GTGCACTGCCGTATAGGCAGCTTAGAAATT	CGGCGGCCGGCCGCGAGCGTCTTGCCATCA
GTTCACTGCCGTCCAGGCAGTTTGAATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028947.1\|WP_159085259.1\|482069_482363_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP028947.1\|WP_042783539.1\|477668_478211_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236143
NZ_CP028947.1\|WP_033641671.1\|487864_488647_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP028947.1\|WP_108680092.1\|479229_480225_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP028947.1\|WP_033651471.1\|483828_485991_-\|ornithine-decarboxylase-SpeF	unknown	unknown	gnl\|CDD\|237434
NZ_CP028947.1\|WP_033644181.1\|480483_481005_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP028947.1\|WP_033638900.1\|473069_474041_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP028947.1\|WP_015376431.1\|488660_489263_-\|phosphonate-metabolism-protein	unknown	unknown	gnl\|CDD\|132351
NZ_CP028947.1\|WP_015376428.1\|486804_487245_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP028947.1\|WP_016929316.1\|475173_476313_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP028947.1\|WP_108680091.1\|478339_479218_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP028947.1\|WP_015376426.1\|482449_483766_-\|putrescine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|182622
NZ_CP028947.1\|WP_108680094.1\|487275_487908_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP028947.1\|WP_108680095.1\|489259_489829_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NZ_CP028947.1\|WP_108680096.1\|489828_490965_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NZ_CP028947.1\|WP_108680090.1\|476866_477655_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP028947.1\|WP_033651473.1\|474022_475177_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP028947.1\|WP_004933443.1\|486266_486371_-\|DUF2618-domain-containing-protein	unknown	unknown	gnl\|CDD\|287855
NZ_CP028947.1\|WP_080491968.1\|471823_472849_-\|luciferase-like-monooxygenase	unknown	unknown	gnl\|CDD\|182505
NZ_CP028947.1\|WP_089192488.1\|480998_481502_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695

Protein	Function_ID	Function_description	E-value
NZ_CP028947.1\|WP_159085259.1\|482069_482363_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	5.70008e-41
NZ_CP028947.1\|WP_042783539.1\|477668_478211_+\|chorismate-mutase	gnl\|CDD\|236143	PRK08055, PRK08055, chorismate mutase; Provisional.	1.60059e-73
NZ_CP028947.1\|WP_033641671.1\|487864_488647_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	4.99455e-152
NZ_CP028947.1\|WP_108680092.1\|479229_480225_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.38746e-115
NZ_CP028947.1\|WP_033651471.1\|483828_485991_-\|ornithine-decarboxylase-SpeF	gnl\|CDD\|237434	PRK13578, PRK13578, ornithine decarboxylase; Provisional.	0
NZ_CP028947.1\|WP_033644181.1\|480483_481005_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	6.54198e-72
NZ_CP028947.1\|WP_033638900.1\|473069_474041_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.32991e-40
NZ_CP028947.1\|WP_015376431.1\|488660_489263_-\|phosphonate-metabolism-protein	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	8.18181e-85
NZ_CP028947.1\|WP_015376428.1\|486804_487245_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.39152e-89
NZ_CP028947.1\|WP_016929316.1\|475173_476313_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.29839e-23
NZ_CP028947.1\|WP_108680091.1\|478339_479218_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP028947.1\|WP_015376426.1\|482449_483766_-\|putrescine-ornithine-antiporter	gnl\|CDD\|182622	PRK10655, potE, putrescine transporter; Provisional.	0
NZ_CP028947.1\|WP_108680094.1\|487275_487908_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.02183e-67
NZ_CP028947.1\|WP_108680095.1\|489259_489829_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.39706e-98
NZ_CP028947.1\|WP_108680096.1\|489828_490965_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NZ_CP028947.1\|WP_108680090.1\|476866_477655_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.51152e-32
NZ_CP028947.1\|WP_033651473.1\|474022_475177_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.10887e-20
NZ_CP028947.1\|WP_004933443.1\|486266_486371_-\|DUF2618-domain-containing-protein	gnl\|CDD\|287855	pfam10940, DUF2618, Protein of unknown function (DUF2618). This bacterial family of proteins has no known function. The sequences within the family are highly conserved.	0.00101809
NZ_CP028947.1\|WP_080491968.1\|471823_472849_-\|luciferase-like-monooxygenase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP028947.1\|WP_089192488.1\|480998_481502_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.14074e-57

>NZ_CP028947.1|WP_089192488.1|480998_481502_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVAGEDRQWVALAPLAVDESLRRQGLAEKLVYEGLDSLNEFSYAAVVVLGDPAYYGRFGFQPAAAYGLNCRWPDTESAFQVYPLAQDALNGVSGEVAFSAPFNRF
>NZ_CP028947.1|WP_033644181.1|480483_481005_+|SCP2-domain-containing-protein
MLEQLRARLVRQGPSLLRIPLKFTPFALQRQLLQQVLSWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDKLVVSQHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELESMPAPLRMGLLQLADFVEAGLQEGTASASRVAASC
>NZ_CP028947.1|WP_108680092.1|479229_480225_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVDYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAQRYPQLERHVSVQASATNEEAIRFYQRNFEVGRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQHTPQGMESRLNDVLIDRYQDHENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDHCQADPAAYRADAAWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP028947.1|WP_108680091.1|478339_479218_-|U32-family-peptidase
MKYALGPVLYYWPKNDIATFYQQAADSSADIIYLGESVCAKRREMKVGDWLALAREIARSGKQVVISTLALLQAPSELNELKRYVENGDFLFEANDLGAVNMAAERGLPFVAGHALNCYNAYTLRLLRRQGMIRWCMPVELSRDWLANLLTQCDELGFRHDFEVEVLSYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRMMRSQEQQQVFVLNGIQTMSGYCYNLGNELPNMQGLVDIVRLSPQGAETLAQIDAFRANELGEQPLALTDHADCNGYWRRVAGLALVE
>NZ_CP028947.1|WP_042783539.1|477668_478211_+|chorismate-mutase
MDFKVTRGLLLLAGLFFSITAVAKPVQTDETASLINQRLSYMKDVAGYKANNHLAIEDLPQEANVLANSVREAEALGLDGKSVAPFIQAQMDAAKAIQYRYRADWLSAPENGWQPESLDSVRAKISRLNTQILTSVSNKLKKGERFNDRFVFMKSLEQTHLKVGDKERLWQSLKRIALKG
>NZ_CP028947.1|WP_108680090.1|476866_477655_+|alpha/beta-hydrolase
MTGKLSVQTVLFEYHGQKYKVFLACDKRHVGCNELNPLYFLDANRHFETLIKASYHGDDVSPVLYIGIGYQEGVDIKAARTFDYTVSDGSERFKDGGGAEQFYRFIQDVVKPWVECRFKVNKQMQTLAGHSFGGHFTLYVAFHHQTAFQRYVAASPALWWANGAVLPEGDVKLAASIDWLSLLLGSREERAEPDSTDLEKEIFQRIEDNPRLNVRNLASQLVKDGERCSFEFLPGRKHPAVAKDYARIANFVASQKPLPTGL
>NZ_CP028947.1|WP_016929316.1|475173_476313_+|ABC-transporter-permease
MKLYWQTFVKVLLGMLERPVWLMLILSLCIMSLVYANRTVWDLPVGVVDQDHSTASRQLIRQLDATSKIAIETYDSLEQAQRDLSWRKLFAVIIMPVDLEKKILSGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLTEYNNGLLLRSGFSERQAQILLTPILGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACIRVNIAMKSMPGGKAPLAAHLGGLTALLPIWLFLSIVLFVLWPWVLGYRQTANIAELLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPVFYLSGTIWPLQSMPAWVRAISYSIPSTWGTKAIAGVNQMGLSLNEVWGDVVMMLILGVVYTLLGFGVAFLRNSVALRGMFRKRRA
>NZ_CP028947.1|WP_033651473.1|474022_475177_+|ABC-transporter-permease
MAMERVRAGWRCFSHAFDKECRVAFRSPVVHWLSWIFPLILFALISSNFSEGTLLDLPVSVVDSDHSPLSKSLTRRLDAGSHAHVEAYGGGLPESLSRLRSAQDYALLYIPPDLEANALSGKQPSVVMYYNALFYGAGLYSTQDFGGLMNEINASTRSIIATEMGKTLPPLADVTLSYGSLFNASGSYIYYQQFAATIHLLQLFAVTCMIYVLARSKSLLQAKPFSLALLGKLAPYTLCFTTLLMVEIAALVGIFDARVSGNPLFMLMIGLFYVMAAQSIGLLLYTFTGSTITAYSLIGILVSIAMTFSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVHASAIFSVCALLAVYPLVAALLVRNRLPARLEKEGNAG
>NZ_CP028947.1|WP_033638900.1|473069_474041_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKKKTLFTLLLMLAAIALAILFRAHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKSGQLIIQLDSPELMAQLRSAQATRDEAKAQLELSLHGTREESIRNLRANLAQAEAQYRNAQNDYNRNLSVAGKGYISKSELDASRRSRDTAFQQVQAAKANLDEGINGDRVEQRQQYAAALRAAEENLLQIQAQSDDLQVKAPVDGEVGPIPAEVGELLNAGSPLVTLIRVPDAYFVFNLREDILAHVRKGDKVKLRVPALKDKMIDTEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPSQPVDGLRPGMSTLWQWKE
>NZ_CP028947.1|WP_080491968.1|471823_472849_-|luciferase-like-monooxygenase
MDDVMTEHTAVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAERWGYRRYWLAEHHNMTGIGSAATSVLLGYLAAGTQSIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGDVDTFPRDVQELQNYFCDAQPGQPVQAVPGQGLHVPLWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALQLYRENFKPSKQLAQPHAMVCVNVIAADSDRDARFLFSSMQQQFINLRRGSPGPLPPPVDNIHALWTAGEQYGVEQALRMSIVGDEKTVRHGLQTLLRETDADEIMVNGQIFDHQARLRSFEIVAGVKGDIVKG
>NZ_CP028947.1|WP_159085259.1|482069_482363_-|GIY-YIG-nuclease-family-protein
MTDTTPTPWHLYMLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLAFHCQVGDRSTALKLEYRVKQLSKIQKERLVNHPPLSLAYLLTD
>NZ_CP028947.1|WP_015376426.1|482449_483766_-|putrescine-ornithine-antiporter
MSKSNNKMGVVQLTILTAVNMMGSGIIMLPTKLAEVGTISIVSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANIAIAISAVGYGTELFDTTLSPLGICIATIGVLWLATVANFGGARITGKISGITVWGVIIPVVGISVIGWYWFSGSAYVAAWNPHQVPTFEAIGASISMTLWAFLGLESACANTDVVENPERNVPIAVLGGTLSAAVIYIVSTNVIAGIVPNMDLANSTAPFGLAFSHMFNPTVGKIIMALMVMSCVGSLLGWQFTIAQVFKSSADSGFFPKIFSRLSKADAPVKGMLTIVVIQSGLSLMTISPSLNKQFNVLVNLAVVTNIIPYILSMAALVIIQKVAKVPDNKARIANIIAGIGALYSFYALYSSGEEAMMWGAIATFLGWTLYGIVSPRFELAGKKG
>NZ_CP028947.1|WP_033651471.1|483828_485991_-|ornithine-decarboxylase-SpeF
MKKLKIAANTHTLGCFETERDIVDVHHSDFNDVAAIVLSVEDVAQGMVARIEEHGLNIPLFVAVCCEEELDNAVLPALHGVFELCGKNTQFYGKQLEAAAAKYESELLPPFFNTLTQYVEMGNATFACPGHQGGEFFRKHPAGRQFFDFYGETLFRSDMCNADVKLGDLLIHEGAPCAAQQHAAKVFNADKTYFVLNGTSASNKVATNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDERYLRQQIREVAPERANEARPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGFSQTSQIHKKDKHIKGQSRYCNHKRFNNAFMLHASTSPFYPLFAALDVNAKMHEGKSGQRLWQECVRVGIEARKMLLDTCTMIKPFVPDQIDGKPWQAYDTAAMANDLRFFNFVPGEKWHAFEGYAESQYFVDPCKLLLTTPGIDTATGSYSEFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDIAKMQHLVALIARFEKHIEQNSLLSEVLPAVYKNHQQRYKNYTIRQLCQEMHDLYVSYDVKELQKEMFRKSYFPRVVMNPQDANTEFVRGNVELVSLAKAEGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINLLPGFAPELQGVYIQQDEDGWNRAYGYVMKN
>NZ_CP028947.1|WP_004933443.1|486266_486371_-|DUF2618-domain-containing-protein
MENNNRKMAHIRRTTHIMMMAHRSCFSFAFFNYR
>NZ_CP028947.1|WP_015376428.1|486804_487245_+|YhbP-family-protein
MNTPEQRQQIADFIGKQHVLTLCAGDGLDMWCANCFYVFDAATMALWLMTEPHTRHGGLMLNNGRVVGTIAPKPKSIALIRGVQYRAEAVLLSGEEAEAARARYCKRFPIARAMKASVWRLDLHEVKMTDNTLGFGKKLHWARSIL
>NZ_CP028947.1|WP_108680094.1|487275_487908_+|NAD(P)H-binding-protein
MARALLVGATGLVGRELLQLLQSDPQITAIVAPTRTPLPPHGKLSNPVGDALFELLSGLQQPVDLVFCCLGTTRRAAGSADAFRYVDYQLVVESALTGRRLGAQHCLVVSALGANADSTFLYNRTKGEMEQALREQRWPRLTLVRPSMLVGDRPAPRLMERLTLPLFRLLPGKWRAVSAKDVAQTLLQQAFTPGEGVRVLESDRLHCYRG
>NZ_CP028947.1|WP_033641671.1|487864_488647_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQVPVFGCDCLICQRARREPAFRRRACSAMLNYQGETTLLDAGLPALERRFSAGQIQRFLLTHYHMDHVQGLFPLRWGCGNSIPVYGPPDEQGCDDLFKHPGILAFQPPLAPFATVELGGMRITPLPLQHSKLTHGYLIQAAGAALAYLTDTVGLPPATADYLQNVALDLLVLDCSLPPQPQAPRNHNDLTRAQETQRLLQPKRTLLTHISHHLDLWLLDNELPAGLELAFDHLSVSLGSSAADPTPAP
>NZ_CP028947.1|WP_015376431.1|488660_489263_-|phosphonate-metabolism-protein
MNDFAQPKIGDNVTLNRTRLGQYVHLADDAILEEVEMGDYSYTAGHNQIFYATIGKFVSIASYARINPGNHPTYQRIAQHHFTYRASEYGLGEDDAAFFDWRREHHVTVGHDVWIGHNAILMPGVSVGNGAVIGSAAVVTKDVEPYSIVAGVAAKKIGMRFDDALIERIERSQWWHWDHATLQARLADFRDINRFAQKYL
>NZ_CP028947.1|WP_108680095.1|489259_489829_-|ribose-1,5-bisphosphokinase
MARLIYLMGPSGAGKDSLLAALRADADRAPLVAHRYITRPADAGCENHIALSEPEFLRRRAKGLFALDWQAHQQRYAFGIEVDLWLLQGIDVAVNGSRAHLPQAQQRYGTQLLPVCLQVNAAILRRRLQDRGRESAEQIEQRLARAAEYQQSLPAGCRVLHNDGPLDDTLAALLALLPTATRQAQDATP
>NZ_CP028947.1|WP_108680096.1|489828_490965_-|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIVNNVKLVLDDQVVQGSLEMQDGVIRSFADGPSRLPQALDGDGGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSHDALMVANGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPHESTLPLFEQLMDKPGVSLVSLMDHSPGQRQFASREKYREYYQGKYHLNDQQMSEYEAQQVALSARWAAPNREAIAAHCRARRISLASHDDATAAHVAESCALGSAIAEFPTTEAAARASHQQGLQVLMGAPNIVRGGSHSGNVAAHHLAALGVLDILSSDYYPASLLDAAFRLAADERNAYDLPQAVRMITRNPARALDLQDRGTIAEGLRADLVLARPHGEHVYVQNVWRQGRQVF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1607278-1607307	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1583740-1583769	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP013917	Sphingomonas sp. LK11 plasmid unnamed2, complete sequence	79916-79945	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	412178-412207	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	412178-412207	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	412190-412219	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	412211-412240	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	412177-412206	5	0.833
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	JQ067084	Pseudomonas phage PaMx25, complete genome	14634-14663	7	0.767
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NC_011667	Thauera sp. MZ1T plasmid pTha01, complete sequence	56543-56572	7	0.767
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	66585-66614	7	0.767
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	67017-67046	7	0.767
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MT074430	Salmonella phage pink, complete genome	33769-33798	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MT074451	Salmonella phage wast, complete genome	32460-32489	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	NC_022752	Salmonella phage SETP13, complete genome	27106-27135	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MN336266	Salmonella phage PIZ SAE-01E2, complete genome	36084-36113	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MF001356	Salmonella phage SG2, partial genome	10902-10931	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MT074473	Salmonella phage blauehaus, complete genome	33730-33759	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	NZ_CP051184	Bermanella marisrubri strain RED65 plasmid pBma45, complete sequence	9624-9653	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	KT962832	Salmonella phage fSE1C, complete genome	27726-27755	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	NC_041992	Salmonella phage wksl3, complete genome	17807-17836	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	LC507823	Salmonella phage vB_StyS-sam DNA, complete genome	624-653	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MN850616	Escherichia phage buks, complete genome	36720-36749	8	0.733
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MN336264	Salmonella phage vB_SenS-EnJE1, complete genome	12696-12725	8	0.733
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP029174	Methylobacterium sp. DM1 plasmid pLVM1, complete sequence	102142-102171	8	0.733
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	353509-353538	8	0.733
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP053345	Herbiconiux sp. SALV-R1 plasmid unnamed1, complete sequence	73225-73254	8	0.733
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NC_022235	Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence	12985-13014	8	0.733
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	KT962832	Salmonella phage fSE1C, complete genome	27726-27756	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	NC_041992	Salmonella phage wksl3, complete genome	17807-17837	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	LC507823	Salmonella phage vB_StyS-sam DNA, complete genome	624-654	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MN850616	Escherichia phage buks, complete genome	36720-36750	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MN336264	Salmonella phage vB_SenS-EnJE1, complete genome	12696-12726	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MT074430	Salmonella phage pink, complete genome	33768-33798	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MT074451	Salmonella phage wast, complete genome	32459-32489	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	NC_022752	Salmonella phage SETP13, complete genome	27105-27135	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MN336266	Salmonella phage PIZ SAE-01E2, complete genome	36083-36113	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MF001356	Salmonella phage SG2, partial genome	10901-10931	9	0.71
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MT074473	Salmonella phage blauehaus, complete genome	33729-33759	9	0.71
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MT074484	Salmonella phage celemicas, complete genome	34181-34210	9	0.7
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MG969408	UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome	33677-33706	9	0.7
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MG969409	UNVERIFIED: Salmonella phage GE_vB_M4, complete genome	17230-17259	9	0.7
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	MG969410	UNVERIFIED: Salmonella phage GE_vB_M5, complete genome	13451-13480	9	0.7
NZ_CP028947_2	2.4\|481925\|30\|NZ_CP028947\|CRISPRCasFinder	481925-481954	30	KX649889	Salmonella phage SE-W109, complete genome	15537-15566	9	0.7
NZ_CP028947_2	2.5\|481985\|30\|NZ_CP028947\|CRISPRCasFinder	481985-482014	30	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	160909-160938	9	0.7
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MG969409	UNVERIFIED: Salmonella phage GE_vB_M4, complete genome	17230-17260	10	0.677
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MG969410	UNVERIFIED: Salmonella phage GE_vB_M5, complete genome	13451-13481	10	0.677
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	KX649889	Salmonella phage SE-W109, complete genome	15537-15567	10	0.677
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MT074484	Salmonella phage celemicas, complete genome	34180-34210	10	0.677
NZ_CP028947_2	2.2\|481924\|31\|NZ_CP028947\|PILER-CR	481924-481954	31	MG969408	UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome	33676-33706	10	0.677

1. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 5, identity: 0.833

cggcg-gccggccgcgagcgtcttgccatca	CRISPR spacer
-gccgcgccggccgcgcccgtcttgccatcg	Protospacer
 * ** **********  ************.

2. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 5, identity: 0.833

cggcg-gccggccgcgagcgtcttgccatca	CRISPR spacer
-gccgcgccggccgcgcccgtcttgccatcg	Protospacer
 * ** **********  ************.

3. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP013917 (Sphingomonas sp. LK11 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgagcgtcttgccatca-	CRISPR spacer
cggcggctggccgcgatcgtctttgc-tcac	Protospacer
*******.******** ******  * ***

4. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgag-cgtcttgccatca	CRISPR spacer
cggcggccggccgcgagccgcttttccagc-	Protospacer
***************** **..** *** *

5. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgag-cgtcttgccatca	CRISPR spacer
cggcggccggccgcgagccgcttttccagc-	Protospacer
***************** **..** *** *

6. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgag-cgtcttgccatca	CRISPR spacer
cggcggccggccgcgagccgcttttccagc-	Protospacer
***************** **..** *** *

7. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgag-cgtcttgccatca	CRISPR spacer
cggcggccggccgcgagccgcttttccagc-	Protospacer
***************** **..** *** *

8. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

cggcggccggccgcgag-cgtcttgccatca	CRISPR spacer
cggcggccggccgcgagccgcttttccagc-	Protospacer
***************** **..** *** *

9. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to JQ067084 (Pseudomonas phage PaMx25, complete genome) position: , mismatch: 7, identity: 0.767

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
gtgctgctggccgcgagcgtcttgcccacg	Protospacer
  ** **.******************  *.

10. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NC_011667 (Thauera sp. MZ1T plasmid pTha01, complete sequence) position: , mismatch: 7, identity: 0.767

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
gtaccgtcggcggcgaccgtcttgccatca	Protospacer
  .* *.**** **** *************

11. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 7, identity: 0.767

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
ccatgcccggccgcgagcggcttgccagct	Protospacer
* ..* ************* ******* *

12. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 7, identity: 0.767

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
ccatgcccggccgcgagcggcttgccagct	Protospacer
* ..* ************* ******* *

13. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MT074430 (Salmonella phage pink, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

14. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MT074451 (Salmonella phage wast, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

15. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to NC_022752 (Salmonella phage SETP13, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

16. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MN336266 (Salmonella phage PIZ SAE-01E2, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

17. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MF001356 (Salmonella phage SG2, partial genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

18. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MT074473 (Salmonella phage blauehaus, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

19. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP051184 (Bermanella marisrubri strain RED65 plasmid pBma45, complete sequence) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
actcaagaagccaagacaaaacaagctttg	Protospacer
.***** ***************.  .* .*

20. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to KT962832 (Salmonella phage fSE1C, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

21. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to NC_041992 (Salmonella phage wksl3, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

22. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to LC507823 (Salmonella phage vB_StyS-sam DNA, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

23. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MN850616 (Escherichia phage buks, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

24. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MN336264 (Salmonella phage vB_SenS-EnJE1, complete genome) position: , mismatch: 8, identity: 0.733

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
ggccaataagtcacgacaaaacgcctgaac	Protospacer
* .*******.** ************ .

25. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP029174 (Methylobacterium sp. DM1 plasmid pLVM1, complete sequence) position: , mismatch: 8, identity: 0.733

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
aggccgccggcctcgagcgtcttgtcgcgc	Protospacer
 *** ******* ***********.*..

26. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 8, identity: 0.733

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
tcacgctcggtcgcgagcgtcttgccattg	Protospacer
. .** .***.*****************..

27. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP053345 (Herbiconiux sp. SALV-R1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
aggcggccggccgcgaacgccttggcgagc	Protospacer
 ***************.**.**** *.

28. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NC_022235 (Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence) position: , mismatch: 8, identity: 0.733

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
aggcggccgaccgcgagcgtctcggggccc	Protospacer
 ********.************.*  ..*

29. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to KT962832 (Salmonella phage fSE1C, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
gggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

30. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to NC_041992 (Salmonella phage wksl3, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

31. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to LC507823 (Salmonella phage vB_StyS-sam DNA, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

32. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MN850616 (Escherichia phage buks, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

33. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MN336264 (Salmonella phage vB_SenS-EnJE1, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

34. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MT074430 (Salmonella phage pink, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

35. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MT074451 (Salmonella phage wast, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

36. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to NC_022752 (Salmonella phage SETP13, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

37. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MN336266 (Salmonella phage PIZ SAE-01E2, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

38. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MF001356 (Salmonella phage SG2, partial genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

39. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MT074473 (Salmonella phage blauehaus, complete genome) position: , mismatch: 9, identity: 0.71

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aggccaataagtcacgacaaaacgcctgaac	Protospacer
 * .*******.** ************ .

40. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MT074484 (Salmonella phage celemicas, complete genome) position: , mismatch: 9, identity: 0.7

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
agccaataagtcacgacaaaacgcctgaac	Protospacer
. .*******.** ************ .

41. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MG969408 (UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome) position: , mismatch: 9, identity: 0.7

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
agccaataagtcacgacaaaacgcctgaac	Protospacer
. .*******.** ************ .

42. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MG969409 (UNVERIFIED: Salmonella phage GE_vB_M4, complete genome) position: , mismatch: 9, identity: 0.7

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
agccaataagtcacgacaaaacgcctgaac	Protospacer
. .*******.** ************ .

43. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to MG969410 (UNVERIFIED: Salmonella phage GE_vB_M5, complete genome) position: , mismatch: 9, identity: 0.7

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
agccaataagtcacgacaaaacgcctgaac	Protospacer
. .*******.** ************ .

44. spacer 2.4|481925|30|NZ_CP028947|CRISPRCasFinder matches to KX649889 (Salmonella phage SE-W109, complete genome) position: , mismatch: 9, identity: 0.7

gctcaataagccaagacaaaacgccttgcg	CRISPR spacer
agccaataagtcacgacaaaacgcctgaac	Protospacer
. .*******.** ************ .

45. spacer 2.5|481985|30|NZ_CP028947|CRISPRCasFinder matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

cggcggccggccgcgagcgtcttgccatca	CRISPR spacer
tggcggccggccgcgaccatcttgatgatc	Protospacer
.*************** *.***** .. .

46. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MG969409 (UNVERIFIED: Salmonella phage GE_vB_M4, complete genome) position: , mismatch: 10, identity: 0.677

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aagccaataagtcacgacaaaacgcctgaac	Protospacer
 . .*******.** ************ .

47. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MG969410 (UNVERIFIED: Salmonella phage GE_vB_M5, complete genome) position: , mismatch: 10, identity: 0.677

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aagccaataagtcacgacaaaacgcctgaac	Protospacer
 . .*******.** ************ .

48. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to KX649889 (Salmonella phage SE-W109, complete genome) position: , mismatch: 10, identity: 0.677

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aagccaataagtcacgacaaaacgcctgaac	Protospacer
 . .*******.** ************ .

49. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MT074484 (Salmonella phage celemicas, complete genome) position: , mismatch: 10, identity: 0.677

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aagccaataagtcacgacaaaacgcctgaac	Protospacer
 . .*******.** ************ .

50. spacer 2.2|481924|31|NZ_CP028947|PILER-CR matches to MG969408 (UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome) position: , mismatch: 10, identity: 0.677

tgctcaataagccaagacaaaacgccttgcg	CRISPR spacer
aagccaataagtcacgacaaaacgcctgaac	Protospacer
 . .*******.** ************ .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

957797 : 966512

Enterobacteria_phage(66.67%)

integrase

attL 949337:949354|attR 964879:964896

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
949337:949354	attL	NA	NA	NA	NA
WP_033651028.1\|957797_958901_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.1e-61	43.8
WP_025160081.1\|958904_960164_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.8e-98	48.6
WP_033649938.1\|960593_961784_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.8e-140	61.1
WP_033649939.1\|962519_962783_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-17	55.0
WP_033649940.1\|962779_963025_+	hypothetical protein	NA	NA	NA	NA
WP_071998180.1\|963030_963576_+	ash family protein	Q7M2A7	Enterobacteria_phage	7.7e-21	55.4
WP_085286334.1\|963572_963836_+	hypothetical protein	NA	NA	NA	NA
WP_085286335.1\|963832_964168_+	DUF5375 family protein	NA	NA	NA	NA
WP_033647429.1\|964178_966512_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.6e-261	60.0
964879:964896	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1726093 : 1801437

Erwinia_phage(37.78%)

integrase,head,portal,plate,capsid,tail,protease,terminase,lysis

attL 1715746:1715765|attR 1774904:1774923

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1715746:1715765	attL	NA	NA	NA	NA
WP_033642514.1\|1726093_1726606_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_108680381.1\|1727021_1728503_+	phospholipase	NA	NA	NA	NA
WP_108680382.1\|1728499_1729273_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_076740545.1\|1729586_1730672_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	5.3e-114	59.1
WP_159085271.1\|1730790_1731396_-	phage repressor protein	F1BUN8	Cronobacter_phage	4.1e-23	34.4
WP_060432780.1\|1731764_1732274_+	hypothetical protein	A0A1S6L008	Salmonella_phage	2.7e-44	53.0
WP_049279101.1\|1732284_1732464_+	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
WP_043148063.1\|1732475_1732778_+	hypothetical protein	NA	NA	NA	NA
WP_103101113.1\|1732842_1733136_+	DUF2732 family protein	NA	NA	NA	NA
WP_103101114.1\|1733135_1733447_+	DUF5405 family protein	NA	NA	NA	NA
WP_103101115.1\|1733446_1733671_+	hypothetical protein	Q6K1F5	Salmonella_virus	1.1e-13	55.6
WP_103101116.1\|1733793_1734111_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	3.9e-17	48.2
WP_103101117.1\|1734129_1734402_-	hypothetical protein	NA	NA	NA	NA
WP_103101118.1\|1734431_1736657_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	1.0e-236	57.6
WP_103101119.1\|1736695_1736920_+	hypothetical protein	NA	NA	NA	NA
WP_146035837.1\|1736967_1737165_+	hypothetical protein	NA	NA	NA	NA
WP_159085272.1\|1737319_1738306_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_103101121.1\|1738256_1738769_-	hypothetical protein	NA	NA	NA	NA
WP_071605322.1\|1739220_1739475_+	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	5.9e-16	47.6
WP_103101269.1\|1739474_1739816_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_103101122.1\|1739861_1740896_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	4.5e-163	80.7
WP_103101123.1\|1740895_1742668_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	2.0e-291	82.0
WP_103101124.1\|1742810_1743626_+\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	1.6e-70	53.1
WP_103101125.1\|1743668_1744880_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	7.9e-159	78.5
WP_033649039.1\|1744882_1745542_+\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	5.2e-80	69.4
WP_033639340.1\|1745635_1746124_+\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
WP_015379118.1\|1746123_1746327_+	phage Tail protein X	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
WP_031231709.1\|1746331_1746541_+	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
WP_103101126.1\|1746524_1747037_+	lysozyme	A0A218M4K3	Erwinia_phage	5.7e-58	65.9
WP_086556869.1\|1747033_1747462_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	4.2e-14	36.6
WP_103101127.1\|1747557_1748031_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	9.9e-49	61.8
WP_103101128.1\|1748017_1748464_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.2e-40	59.1
WP_103101129.1\|1748536_1749166_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.9e-76	71.5
WP_103101130.1\|1749313_1749664_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.2e-36	65.5
WP_103101131.1\|1749668_1750577_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.3e-108	69.2
WP_103101132.1\|1750569_1751103_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	3.7e-76	76.0
WP_103101133.1\|1751109_1753629_+	hypothetical protein	Q858V4	Yersinia_virus	9.3e-61	54.6
WP_060431372.1\|1753630_1754155_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	3.7e-36	44.8
WP_048321696.1\|1754323_1754542_-	hypothetical protein	NA	NA	NA	NA
WP_103101134.1\|1755269_1756439_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.1e-181	80.2
WP_023447563.1\|1756453_1756963_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
WP_103101135.1\|1757017_1757299_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.4e-26	70.1
WP_026142543.1\|1757331_1757454_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	3.0e-10	75.0
WP_103101136.1\|1757446_1760296_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	2.0e-99	46.7
WP_103101137.1\|1760295_1760781_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	2.5e-47	64.9
WP_055312616.1\|1760777_1761926_+	phage late control D family protein	A0A218M4J7	Erwinia_phage	4.1e-125	63.4
WP_072265518.1\|1762025_1762244_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.2e-26	72.2
WP_004938680.1\|1762537_1764226_-	aspartate:alanine antiporter	NA	NA	NA	NA
WP_033642521.1\|1764519_1764909_+	membrane protein	NA	NA	NA	NA
WP_004938676.1\|1764948_1765212_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.7e-26	70.5
WP_072627974.1\|1765442_1765757_+	YbjC family protein	NA	NA	NA	NA
WP_033642523.1\|1765813_1766716_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	37.0
WP_072627973.1\|1766852_1767332_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_033642524.1\|1767738_1768848_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_089191441.1\|1768968_1770102_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	5.5e-29	34.0
WP_042784087.1\|1770126_1771089_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_042784088.1\|1771085_1771931_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_047024958.1\|1772092_1772572_+	YbjO family protein	NA	NA	NA	NA
WP_108680383.1\|1772640_1773768_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	26.8
WP_004928423.1\|1774036_1774288_-	prevent-host-death protein	NA	NA	NA	NA
WP_015377297.1\|1774389_1775124_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
1774904:1774923	attR	NA	NA	NA	NA
WP_033650651.1\|1775322_1775991_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_025159684.1\|1775990_1776707_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004928409.1\|1776716_1777448_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_089192582.1\|1777480_1778209_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.8e-28	35.8
WP_033642535.1\|1778473_1779016_-	lipoprotein	NA	NA	NA	NA
WP_004928400.1\|1779175_1779499_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	2.9e-15	43.3
WP_108680384.1\|1779552_1781118_-	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_047024954.1\|1781305_1782142_+	N-acetylmuramoyl-L-alanine amidase	A0A223VZK2	Agrobacterium_phage	7.7e-12	30.2
WP_004928393.1\|1782142_1783153_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_108680385.1\|1783311_1784751_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_033642539.1\|1784901_1785249_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_108680386.1\|1785278_1786295_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_042784096.1\|1786370_1788092_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_108680387.1\|1788290_1789292_-	NADH oxidoreductase	NA	NA	NA	NA
WP_033650659.1\|1789347_1790997_-	hydroxylamine reductase	NA	NA	NA	NA
WP_033642544.1\|1791178_1792075_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_033650660.1\|1792262_1793921_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_089191452.1\|1793935_1794889_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_033642548.1\|1795083_1796199_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_108680388.1\|1796198_1798145_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	4.7e-36	37.3
WP_004928349.1\|1798232_1798454_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	59.7
WP_004928347.1\|1798809_1799130_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.2e-15	42.7
WP_004928343.1\|1799157_1801437_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.7e-167	42.0

DBSCAN-SWA_3

2198335 : 2225377

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108680581.1\|2198335_2199754_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_033642834.1\|2199900_2200110_-	hypothetical protein	NA	NA	NA	NA
WP_033638276.1\|2200889_2201282_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_089191602.1\|2201286_2201886_+	hypothetical protein	NA	NA	NA	NA
WP_033652110.1\|2201941_2202181_-	YebV family protein	NA	NA	NA	NA
WP_033644260.1\|2202316_2203249_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108682293.1\|2203268_2205611_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_046686936.1\|2205762_2206530_-	molecular chaperone	NA	NA	NA	NA
WP_108680583.1\|2206550_2207093_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_033642839.1\|2207086_2207590_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_046686938.1\|2207592_2208129_-	fimbrial major subunit CsuA/B family protein	NA	NA	NA	NA
WP_033652487.1\|2208402_2208939_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_108680585.1\|2209204_2210641_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_108682297.1\|2210743_2213374_-	PqiB family protein	NA	NA	NA	NA
WP_108682295.1\|2213342_2214590_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_033642843.1\|2214845_2215343_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|2215439_2216150_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033642845.1\|2216169_2218218_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.5e-85	33.9
WP_033642846.1\|2218286_2219132_-	DMT family transporter	NA	NA	NA	NA
WP_072627727.1\|2219128_2220436_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_072627726.1\|2220428_2221226_-	nicotianamine synthase	NA	NA	NA	NA
WP_047026224.1\|2221213_2221999_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-10	28.4
WP_033652483.1\|2221995_2223036_-	iron ABC transporter permease	NA	NA	NA	NA
WP_042784331.1\|2223038_2224130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033652481.1\|2224498_2225377_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_4

3409939 : 3448080

Salmonella_phage(30.95%)

head,integrase,portal,plate,tail,capsid,protease,terminase,holin

attL 3408414:3408428|attR 3448291:3448305

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3408414:3408428	attL	NA	NA	NA	NA
WP_108681489.1\|3409939_3412327_-	hypothetical protein	Q9LA62	Enterobacterial_phage	5.1e-08	33.0
WP_153860755.1\|3412435_3412609_+	hypothetical protein	NA	NA	NA	NA
WP_108681491.1\|3412645_3412909_+	transcriptional regulator	NA	NA	NA	NA
WP_159085281.1\|3412922_3413975_+	acyltransferase family protein	NA	NA	NA	NA
WP_108681495.1\|3414011_3414413_-	hypothetical protein	A0A0M4RTP2	Salmonella_phage	6.5e-09	46.6
WP_108681497.1\|3414416_3415700_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.4e-28	65.4
WP_108681499.1\|3415701_3416280_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	4.0e-84	75.0
WP_108681501.1\|3416289_3417354_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	1.1e-132	63.6
WP_046687472.1\|3417346_3417760_-	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	2.9e-52	70.1
WP_108681503.1\|3417756_3418293_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	5.1e-33	45.6
WP_108681505.1\|3418292_3419369_-\|plate	baseplate protein	U5P0H6	Shigella_phage	1.6e-142	68.9
WP_108681506.1\|3419365_3420658_-	DNA circularization protein	S5FUX4	Shigella_phage	9.4e-142	58.6
WP_108681508.1\|3420694_3422563_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	2.1e-195	58.9
WP_108681510.1\|3422647_3422971_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	1.7e-28	63.2
WP_063990574.1\|3422967_3423324_-\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	1.8e-55	87.3
WP_108682329.1\|3423323_3424820_-\|tail	phage tail protein	Q8HAC5	Salmonella_phage	7.7e-188	70.1
WP_108681512.1\|3424803_3425007_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	3.7e-13	74.5
WP_108681514.1\|3425013_3425574_-	hypothetical protein	Q8HAC7	Salmonella_phage	3.6e-66	62.9
WP_072055839.1\|3425570_3426095_-	hypothetical protein	Q8HAC8	Salmonella_phage	1.2e-71	80.7
WP_108681516.1\|3426069_3426426_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	6.8e-26	50.4
WP_063990577.1\|3426461_3426779_-\|head,tail	phage gp6-like head-tail connector protein	S5FKK6	Shigella_phage	1.5e-32	63.2
WP_108681518.1\|3426863_3428102_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	7.3e-168	72.1
WP_108681520.1\|3428111_3428711_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	4.4e-86	78.0
WP_046687484.1\|3428703_3429930_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	4.8e-196	79.9
WP_108681522.1\|3430078_3431809_-\|terminase	terminase large subunit	Q8W631	Enterobacteria_phage	4.4e-195	58.3
WP_046687487.1\|3431808_3432246_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	1.6e-32	61.9
WP_046687488.1\|3432364_3432721_-	HNH endonuclease	S5FKR6	Shigella_phage	3.3e-49	76.5
WP_159085282.1\|3432849_3433224_-	hypothetical protein	NA	NA	NA	NA
WP_108681526.1\|3433259_3433700_-	lysozyme	A0A0M4R365	Salmonella_phage	4.6e-48	67.8
WP_108682331.1\|3433686_3434004_-\|holin	holin	F1C5D1	Cronobacter_phage	4.4e-37	76.5
WP_108681528.1\|3434078_3435107_-	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	1.5e-121	62.7
WP_108681530.1\|3435399_3436071_-	hypothetical protein	Q8HA89	Salmonella_phage	3.2e-45	44.1
WP_108681533.1\|3436067_3436646_-	protein NinG	A0A1P8DTE0	Proteus_phage	1.3e-39	63.3
WP_108681534.1\|3436629_3437616_-	DNA primase	A0A286N2Q0	Klebsiella_phage	7.2e-110	61.0
WP_108681536.1\|3437612_3439142_-	DEAD/DEAH box helicase	A0A1B5FPA4	Escherichia_phage	2.4e-197	66.0
WP_033653818.1\|3439327_3439627_-	hypothetical protein	A0A0N7BYT1	Escherichia_phage	1.9e-13	45.3
WP_101453954.1\|3439661_3440195_-	DNA-binding protein	S5FXP0	Shigella_phage	8.3e-44	54.2
WP_108681538.1\|3440253_3440484_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	7.0e-16	55.1
WP_033653816.1\|3440588_3441254_+	helix-turn-helix domain-containing protein	K7P8B2	Enterobacteria_phage	1.4e-61	54.2
WP_108681540.1\|3441657_3441906_+	hypothetical protein	NA	NA	NA	NA
WP_159085283.1\|3442003_3442273_-	hypothetical protein	NA	NA	NA	NA
WP_046687498.1\|3442461_3442824_+	hypothetical protein	NA	NA	NA	NA
WP_108681542.1\|3442866_3443688_+	DUF2303 family protein	A0A0A8IL76	Aurantimonas_phage	6.4e-19	29.4
WP_108681544.1\|3443760_3444594_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	3.6e-86	59.1
WP_108681546.1\|3444590_3444809_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.7e-08	40.3
WP_108681548.1\|3444827_3445010_+	DUF1482 family protein	NA	NA	NA	NA
WP_159085284.1\|3445006_3445210_+	hypothetical protein	NA	NA	NA	NA
WP_108681550.1\|3445209_3445563_+	hypothetical protein	R9W086	Serratia_phage	1.2e-14	69.5
WP_159085285.1\|3445552_3445891_+	hypothetical protein	NA	NA	NA	NA
WP_108681554.1\|3445891_3446098_+	hypothetical protein	NA	NA	NA	NA
WP_108681556.1\|3446135_3446699_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.5e-67	64.8
WP_072271584.1\|3446723_3446915_+	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	7.3e-19	68.3
WP_108681558.1\|3446895_3448080_-\|integrase	site-specific integrase	K7P7J2	Enterobacteria_phage	6.5e-166	67.9
3448291:3448305	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3513286 : 3533916

Klebsiella_phage(27.78%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108681597.1\|3513286_3515308_-\|tail	phage tail protein	A0A1I9SF20	Klebsiella_phage	2.3e-30	42.5
WP_108681599.1\|3515304_3516465_-\|tail	tail fiber domain-containing protein	K7P7B1	Enterobacteria_phage	1.1e-43	57.9
WP_089192041.1\|3516515_3520103_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	66.0
WP_099784199.1\|3520156_3520771_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	4.3e-52	55.8
WP_143557036.1\|3520825_3521164_-	hypothetical protein	NA	NA	NA	NA
WP_108681601.1\|3521200_3521905_-	C40 family peptidase	K7PGR2	Enterobacteria_phage	1.4e-107	74.9
WP_103086416.1\|3521914_3522664_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.0e-95	64.9
WP_072627296.1\|3522676_3523015_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	4.9e-34	60.9
WP_072627295.1\|3523014_3525306_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	2.8e-16	43.1
WP_004935830.1\|3525298_3525520_-	hypothetical protein	Q6UAW9	Klebsiella_phage	1.7e-11	47.9
WP_025160180.1\|3525537_3525903_-\|tail	phage tail protein	Q7Y401	Yersinia_phage	6.5e-24	45.0
WP_033652513.1\|3526029_3526485_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	2.5e-57	75.5
WP_033652512.1\|3526525_3526918_-	hypothetical protein	Q7Y404	Yersinia_phage	4.7e-20	46.0
WP_042785078.1\|3526914_3527304_-	hypothetical protein	Q7Y405	Yersinia_phage	3.7e-25	42.1
WP_042785079.1\|3527361_3527802_-	lysozyme	A0A0M5M782	Salmonella_phage	3.4e-43	62.3
WP_033652509.1\|3527788_3528109_-\|holin	holin	F1C5D1	Cronobacter_phage	1.1e-40	81.0
WP_108681603.1\|3528899_3529262_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	6.0e-38	64.6
WP_108681605.1\|3529504_3530182_+	S26 family signal peptidase	K7PK07	Enterobacteria_phage	3.8e-09	30.1
WP_004935874.1\|3530600_3530930_-	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_108681607.1\|3531057_3531525_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_033651920.1\|3531633_3532212_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_033651921.1\|3532205_3532622_-	glyoxalase	NA	NA	NA	NA
WP_033651922.1\|3532779_3533916_-	porin OmpC	Q1MVN1	Enterobacteria_phage	4.0e-104	53.8

DBSCAN-SWA_6

3807333 : 3814427

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004941660.1\|3807333_3807687_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-19	47.0
WP_033644019.1\|3807887_3808118_+	hypothetical protein	J9Q735	Salmonella_phage	4.2e-13	50.7
WP_033644020.1\|3808131_3808671_+	DNA-binding protein	J9Q7G7	Salmonella_phage	4.0e-46	56.6
WP_025159568.1\|3808684_3809386_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_016926729.1\|3809658_3810174_+	hypothetical protein	NA	NA	NA	NA
WP_016926728.1\|3810207_3810456_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_046687617.1\|3810503_3811793_-	uracil permease	Q9KX94	Enterobacteria_phage	6.0e-64	38.2
WP_004941642.1\|3811869_3812496_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_025303843.1\|3812751_3813789_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	3.8e-69	41.9
WP_033644022.1\|3813788_3814427_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-26	39.2

DBSCAN-SWA_7

4235107 : 4244914

Morganella_phage(33.33%)

tRNA,integrase

attL 4239889:4239904|attR 4243648:4243663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108682349.1\|4235107_4237243_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.0e-201	59.8
WP_108681903.1\|4237893_4238118_-	hypothetical protein	NA	NA	NA	NA
WP_159085288.1\|4238114_4238309_-	hypothetical protein	NA	NA	NA	NA
WP_159085289.1\|4238292_4238511_-	hypothetical protein	NA	NA	NA	NA
WP_108681907.1\|4239166_4240018_-	antA/AntB antirepressor family protein	A0A1U9AJ93	Stx1_converting_phage	5.4e-21	44.4
4239889:4239904	attL	NA	NA	NA	NA
WP_108681909.1\|4240032_4240455_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.6e-26	55.6
WP_108681911.1\|4240454_4240652_-	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	1.6e-05	41.5
WP_108681913.1\|4240869_4241646_-	hypothetical protein	NA	NA	NA	NA
WP_108681915.1\|4241796_4243011_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.4e-142	60.6
WP_004931697.1\|4243396_4244914_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	7.7e-87	38.7
4243648:4243663	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4787902 : 4796830

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108682127.1\|4787902_4789981_+	hypothetical protein	H9YQA8	environmental_Halophage	1.3e-52	71.9
WP_033645260.1\|4790021_4791239_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.6e-26	26.1
WP_033645386.1\|4791371_4791947_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.1e-69	63.2
WP_108682129.1\|4792019_4793543_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.5e-77	42.6
WP_025304522.1\|4793694_4794420_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_033651731.1\|4794419_4796105_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.5e-224	72.8
WP_033636286.1\|4796260_4796830_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	1.3e-07	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028947

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection