CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028948	Serratia marcescens strain AR_0123 chromosome, complete genome	0 crisprs	DEDDh,cas14j,cas3,csa3,DinG,WYL,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

561512 : 570168

Enterobacteria_phage(66.67%)

integrase

attL 562695:562709|attR 568555:568569

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048321301.1\|561512_563846_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.3e-262	60.2
562695:562709	attL	NA	NA	NA	NA
WP_048321300.1\|563857_564193_-	DUF5375 family protein	NA	NA	NA	NA
WP_048321299.1\|564189_564453_-	hypothetical protein	NA	NA	NA	NA
WP_048321298.1\|564449_564995_-	ash family protein	Q7M2A7	Enterobacteria_phage	5.5e-27	60.7
WP_048321297.1\|564981_565197_-	hypothetical protein	NA	NA	NA	NA
WP_048321296.1\|565193_565457_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-17	55.0
WP_033649938.1\|566192_567383_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.8e-140	61.1
WP_086556832.1\|567801_569061_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	48.6
568555:568569	attR	NA	NA	NA	NA
WP_033637217.1\|569064_570168_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4

DBSCAN-SWA_2

2145049 : 2186426

Erwinia_phage(46.15%)

plate,tail,terminase,tRNA,portal,capsid,head,lysis,integrase

attL 2144907:2144957|attR 2180196:2180246

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2144907:2144957	attL	NA	NA	NA	NA
WP_049279097.1\|2145049_2146084_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	1.5e-121	62.6
WP_048321973.1\|2146087_2146672_-	phage repressor protein CI	F1BUS8	Erwinia_phage	6.3e-29	40.2
WP_048321972.1\|2146781_2147003_+	hypothetical protein	NA	NA	NA	NA
WP_015379133.1\|2147033_2147543_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	4.2e-45	53.6
WP_048322123.1\|2147553_2147733_+	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
WP_031221632.1\|2147744_2148047_+	hypothetical protein	NA	NA	NA	NA
WP_048321971.1\|2148110_2148353_+	DUF2732 family protein	NA	NA	NA	NA
WP_048321970.1\|2148352_2148664_+	DUF5405 family protein	NA	NA	NA	NA
WP_048321969.1\|2148663_2148882_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	5.6e-15	56.9
WP_072071910.1\|2148887_2149469_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.7e-58	58.4
WP_048321968.1\|2149591_2149873_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
WP_048321967.1\|2149869_2152086_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	3.1e-238	58.3
WP_072071909.1\|2152124_2152337_+	hypothetical protein	NA	NA	NA	NA
WP_072071908.1\|2152497_2154294_+	N-6 DNA methylase	NA	NA	NA	NA
WP_072071907.1\|2154290_2155373_+	restriction endonuclease	NA	NA	NA	NA
WP_072071906.1\|2155757_2156012_+	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	1.6e-16	48.8
WP_033633573.1\|2156011_2156353_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_048321966.1\|2156397_2157432_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	1.6e-163	80.7
WP_033632041.1\|2157431_2159204_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	5.2e-292	82.2
WP_048321965.1\|2159346_2160162_+\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	7.1e-71	53.5
WP_048321964.1\|2160204_2161389_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	4.5e-159	78.6
WP_033649039.1\|2161391_2162051_+\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	5.2e-80	69.4
WP_033639340.1\|2162144_2162633_+\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
WP_048321963.1\|2162632_2162836_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	1.8e-20	68.7
WP_031231709.1\|2162840_2163050_+	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
WP_048321962.1\|2163033_2163546_+	lysozyme	A0A218M4K3	Erwinia_phage	6.7e-59	66.3
WP_048321961.1\|2163542_2163971_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	4.6e-13	36.0
WP_048321960.1\|2164066_2164543_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-50	65.4
WP_048321959.1\|2164529_2164979_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	7.2e-41	61.1
WP_072071905.1\|2165061_2166891_+	ATP-binding protein	E5E3R2	Burkholderia_phage	3.7e-11	24.7
WP_048321958.1\|2166972_2167602_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.1e-76	74.3
WP_108658200.1\|2167617_2167884_+	hypothetical protein	NA	NA	NA	NA
WP_048321956.1\|2167880_2168231_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.4e-36	65.5
WP_048321955.1\|2168235_2169144_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.4e-107	67.9
WP_048321954.1\|2169136_2169670_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	1.6e-76	76.0
WP_108658201.1\|2169676_2172337_+	hypothetical protein	Q858V4	Yersinia_virus	9.8e-61	54.6
WP_072071904.1\|2172342_2172762_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.6e-16	38.7
WP_048321952.1\|2173037_2174207_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	4.0e-184	81.7
WP_023447563.1\|2174222_2174732_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
WP_048321951.1\|2174786_2175068_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	9.1e-26	69.0
WP_023456045.1\|2175100_2175223_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
WP_048321950.1\|2175215_2178044_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.8e-106	39.1
WP_015379102.1\|2178043_2178529_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
WP_048321949.1\|2178525_2179686_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	7.4e-138	65.4
WP_033644586.1\|2179769_2180000_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	9.4e-21	64.5
WP_033649053.1\|2180423_2180912_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
2180196:2180246	attR	NA	NA	NA	NA
WP_033636080.1\|2180987_2182829_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_025304325.1\|2182986_2184735_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
WP_001144069.1\|2184871_2185087_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_033649054.1\|2185412_2186426_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-110	59.5

DBSCAN-SWA_3

3591439 : 3626327

Escherichia_phage(25.71%)

plate,tail,terminase,portal,capsid,head,integrase

attL 3592246:3592267|attR 3625207:3625228

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015378226.1\|3591439_3592228_+	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	9.2e-92	76.3
3592246:3592267	attL	NA	NA	NA	NA
WP_048321723.1\|3592372_3593356_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	4.1e-121	64.8
WP_072071899.1\|3593443_3593743_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	2.2e-38	77.8
WP_048321722.1\|3593868_3594144_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.5e-33	71.1
WP_037421654.1\|3594335_3594836_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	2.2e-67	72.3
WP_033652239.1\|3594899_3595157_+	DUF2732 family protein	NA	NA	NA	NA
WP_048321721.1\|3595149_3595449_+	DUF5405 family protein	NA	NA	NA	NA
WP_021504068.1\|3595451_3595667_+	hypothetical protein	NA	NA	NA	NA
WP_048321719.1\|3595669_3595951_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	7.7e-25	56.8
WP_048321718.1\|3595947_3598236_+	replication endonuclease	S4TTC1	Salmonella_phage	1.5e-267	60.5
WP_048321717.1\|3598325_3599054_+	hypothetical protein	Q37850	Escherichia_phage	9.8e-72	57.0
WP_048321716.1\|3599239_3600889_+	AAA family ATPase	NA	NA	NA	NA
WP_108675270.1\|3600885_3602028_+	AAA family ATPase	NA	NA	NA	NA
WP_048321714.1\|3602339_3603371_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	6.3e-165	81.3
WP_048321713.1\|3603367_3605140_-\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	3.8e-287	81.3
WP_048321712.1\|3605300_3606146_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	9.6e-103	66.7
WP_080441019.1\|3606216_3607416_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	9.3e-152	75.9
WP_048321711.1\|3607418_3608162_+\|terminase	terminase	Q6K1I5	Salmonella_virus	2.9e-71	63.2
WP_021504058.1\|3608255_3608762_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.5e-63	71.4
WP_048321710.1\|3608761_3608965_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	1.1e-20	71.6
WP_033652228.1\|3608967_3609177_+	hypothetical protein	E5G6N0	Salmonella_phage	9.8e-09	39.1
WP_048321708.1\|3609160_3609670_+	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-63	73.7
WP_048321707.1\|3609666_3610104_+	hypothetical protein	O80310	Escherichia_phage	1.2e-13	42.4
WP_048321706.1\|3610193_3610661_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	4.5e-62	75.5
WP_048321705.1\|3610653_3611100_+	phage virion morphogenesis protein	O80313	Escherichia_phage	2.9e-50	73.6
WP_053063701.1\|3611175_3611613_-	hypothetical protein	NA	NA	NA	NA
WP_147435411.1\|3611602_3612133_-	hypothetical protein	NA	NA	NA	NA
WP_048321701.1\|3612289_3612931_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.9e-67	60.6
WP_048321700.1\|3612927_3613278_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	8.9e-39	70.7
WP_048321699.1\|3613282_3614191_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.5e-101	64.9
WP_048321698.1\|3614183_3614717_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	6.3e-76	76.0
WP_080441018.1\|3614723_3616820_+	hypothetical protein	Q858V4	Yersinia_virus	7.0e-62	55.5
WP_048321697.1\|3616821_3617346_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	6.2e-36	45.3
WP_048321696.1\|3617514_3617733_-	hypothetical protein	NA	NA	NA	NA
WP_048321695.1\|3618478_3619648_+\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	6.2e-185	81.4
WP_048321694.1\|3619664_3620183_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.0e-75	77.3
WP_048321692.1\|3620240_3620543_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.9e-29	79.3
WP_071796738.1\|3620575_3620695_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	4.5e-11	74.4
WP_048321691.1\|3620687_3623135_+\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	1.7e-256	64.9
WP_033644295.1\|3623147_3623633_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	3.5e-49	60.5
WP_048321690.1\|3623629_3624799_+	phage late control D family protein	Q6K1G4	Salmonella_virus	3.0e-163	74.7
WP_033643461.1\|3624878_3625097_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	6.8e-21	62.5
WP_039565556.1\|3625424_3626327_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	5.7e-37	38.8
3625207:3625228	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4423360 : 4478433

Tupanvirus(22.22%)

tRNA,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033646315.1\|4423360_4425748_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.8e-05	25.0
WP_004931416.1\|4425762_4426746_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
WP_151498502.1\|4426992_4427088_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_004931417.1\|4427157_4427514_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004931418.1\|4427557_4427755_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_048233542.1\|4427853_4428405_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_025159696.1\|4428408_4430337_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
WP_033646316.1\|4430552_4431176_-	hypothetical protein	NA	NA	NA	NA
WP_033646317.1\|4431415_4432465_-	hypothetical protein	NA	NA	NA	NA
WP_033646318.1\|4432849_4433539_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_033646319.1\|4433575_4434709_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033638320.1\|4434859_4436143_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_039566431.1\|4436400_4437738_-	cytochrome c	NA	NA	NA	NA
WP_004931432.1\|4437750_4439532_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_033638317.1\|4439534_4440260_-	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_004931439.1\|4440567_4441233_-	transglycosylase SLT domain-containing protein	I6ZXX9	Escherichia_phage	1.0e-06	46.3
WP_033638315.1\|4441342_4441642_+	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_033638313.1\|4441773_4442718_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033638312.1\|4442714_4443605_+	manganese/iron ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	2.5e-08	27.7
WP_033638311.1\|4443604_4444465_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_048321510.1\|4444464_4445319_+	metal ABC transporter permease	NA	NA	NA	NA
WP_033646323.1\|4445558_4446428_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_033638308.1\|4446463_4447024_-	membrane protein	NA	NA	NA	NA
WP_033646324.1\|4447209_4448490_+\|protease	protease	NA	NA	NA	NA
WP_033638306.1\|4448553_4449219_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_048321509.1\|4449642_4450191_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	6.4e-07	35.8
WP_086579715.1\|4450366_4451764_+	L-cystine transporter	NA	NA	NA	NA
WP_048321508.1\|4451827_4452637_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_048321507.1\|4452646_4453750_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_048321506.1\|4453905_4454625_+	phosphonate utilization transcriptional regulator PhnR	NA	NA	NA	NA
WP_048321505.1\|4454800_4455811_+	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033646328.1\|4455807_4456944_+	2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT	G3M9Y6	Bacillus_virus	1.3e-25	33.7
WP_033646329.1\|4456945_4457809_+	2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA
WP_048321504.1\|4457811_4458615_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_048321503.1\|4458661_4459453_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_033646331.1\|4459684_4461079_+	MFS transporter	NA	NA	NA	NA
WP_048321502.1\|4461179_4461887_-	hypothetical protein	NA	NA	NA	NA
WP_033638291.1\|4462124_4463003_-\|protease	protease HtpX	NA	NA	NA	NA
WP_033638289.1\|4463312_4465361_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.7e-85	33.7
WP_033638287.1\|4465380_4466091_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_033638286.1\|4466187_4466685_-	GAF domain-containing protein	NA	NA	NA	NA
WP_048322071.1\|4466940_4468188_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_048322070.1\|4468156_4470787_+	PqiB family protein	NA	NA	NA	NA
WP_048321501.1\|4470889_4472326_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033638282.1\|4472600_4473140_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_071883799.1\|4473142_4473646_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033646335.1\|4473645_4474200_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_048321500.1\|4474224_4474989_+	molecular chaperone	NA	NA	NA	NA
WP_048322069.1\|4475134_4477477_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_048321499.1\|4477497_4478433_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage