CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP024040	Klebsiella pneumoniae strain QS17-0029 plasmid pMR0617ctx, complete sequence	0 crisprs	NA	2
NZ_CP024043	Klebsiella pneumoniae strain QS17-0029 plasmid pMRSN479404_5.3, complete sequence	0 crisprs	NA	0
NZ_CP024038	Klebsiella pneumoniae strain QS17-0029 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,WYL,DinG,RT	8
NZ_CP024044	Klebsiella pneumoniae strain QS17-0029 plasmid pMRSN479404_4.7, complete sequence	0 crisprs	NA	0
NZ_CP024041	Klebsiella pneumoniae strain QS17-0029 plasmid pMR0617mcr, complete sequence	0 crisprs	NA	0
NZ_CP024039	Klebsiella pneumoniae strain QS17-0029 plasmid pMR0617ndm, complete sequence	0 crisprs	csa3	1
NZ_CP024042	Klebsiella pneumoniae strain QS17-0029 plasmid pMR0617oxa, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2964 : 47827

Salmonella_phage(30.0%)

transposase,integrase

attL 20:33|attR 7614:7627

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
20:33	attL	NA	NA	NA	NA
WP_004152342.1\|2964_4233_+\|transposase	ISL3-like element ISKpn25 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
WP_004152341.1\|4352_4826_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_011977773.1\|4917_5148_+	hypothetical protein	NA	NA	NA	NA
WP_004152340.1\|6039_6822_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_004152339.1\|6821_7154_-	hypothetical protein	NA	NA	NA	NA
WP_004152338.1\|7160_7517_-	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|7584_7914_-	hypothetical protein	NA	NA	NA	NA
7614:7627	attR	NA	NA	NA	NA
WP_004152336.1\|7941_8250_-	hypothetical protein	NA	NA	NA	NA
WP_004153649.1\|8295_8502_-	hypothetical protein	NA	NA	NA	NA
WP_123806157.1\|9123_9717_+	hypothetical protein	NA	NA	NA	NA
WP_001568023.1\|9857_10886_+	hypothetical protein	NA	NA	NA	NA
WP_001568022.1\|11030_13835_-	hypothetical protein	NA	NA	NA	NA
WP_001568020.1\|14434_15850_-	AAA family ATPase	NA	NA	NA	NA
WP_001568019.1\|15846_17574_-	AAA family ATPase	NA	NA	NA	NA
WP_001568018.1\|18019_18268_+	hypothetical protein	NA	NA	NA	NA
WP_015632385.1\|18264_18837_+	hypothetical protein	NA	NA	NA	NA
WP_001568016.1\|18867_19362_+	hypothetical protein	NA	NA	NA	NA
WP_001568014.1\|19594_19903_-	hypothetical protein	NA	NA	NA	NA
WP_001567366.1\|20396_20945_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_001567367.1\|20991_21426_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001567368.1\|21696_23100_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_000427623.1\|23991_24996_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_003100881.1\|25074_28041_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
WP_001247892.1\|28115_28406_+	nucleotidyltransferase	NA	NA	NA	NA
WP_001293886.1\|28402_28804_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_000215515.1\|28793_29150_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000091613.1\|29404_29719_+	hypothetical protein	NA	NA	NA	NA
WP_004194048.1\|30145_31327_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.9e-120	64.2
WP_000509966.1\|31986_32592_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_000027057.1\|36592_37453_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000722315.1\|38152_38977_-	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_001206315.1\|39036_39825_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_063840280.1\|39894_40449_-	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001217881.1\|40682_41240_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_000608644.1\|41803_43066_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|43321_44197_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|44243_44576_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_001067855.1\|47122_47827_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

108377 : 120471

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152355.1\|108377_109079_-	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7
WP_001568040.1\|109515_109746_-	hypothetical protein	NA	NA	NA	NA
WP_048322266.1\|109808_110480_-	Mediator of plasmid stability	NA	NA	NA	NA
WP_032414078.1\|110482_111454_-	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152352.1\|111685_112117_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152351.1\|112116_113388_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152350.1\|113788_114685_+	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152349.1\|115006_116212_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152348.1\|116208_117183_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152347.1\|117559_117892_+	hypothetical protein	NA	NA	NA	NA
WP_004227314.1\|118116_118332_+	hypothetical protein	NA	NA	NA	NA
WP_004152345.1\|118443_120471_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024039

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13858 : 65226

Escherichia_phage(37.5%)

transposase,integrase,protease

attL 32717:32776|attR 56612:57084

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048266692.1\|13858_15130_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	6.9e-12	27.6
WP_001190712.1\|17642_17864_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216034.1\|17863_18244_+	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001513661.1\|18248_18428_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001513660.1\|18455_18815_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513659.1\|19101_19419_-	hypothetical protein	NA	NA	NA	NA
WP_012372828.1\|19646_20663_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4
WP_001373486.1\|20870_22274_+	S-methylmethionine permease	NA	NA	NA	NA
WP_000081352.1\|22260_23193_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_000361612.1\|26346_27324_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	3.9e-100	59.2
WP_001066942.1\|27608_28349_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_032156742.1\|28469_28595_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|29794_30964_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|31159_31453_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|31558_31834_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|31833_32118_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
32717:32776	attL	NA	NA	NA	NA
WP_000428546.1\|35160_35754_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|35866_37072_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_094083863.1\|37150_37777_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|37754_38441_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|38448_38835_-	hypothetical protein	NA	NA	NA	NA
WP_049802299.1\|38827_39091_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_094083872.1\|39845_40115_+	chloramphenicol acetyltransferase	A0A1I9LJQ7	Stx_converting_phage	4.7e-48	98.9
WP_000656305.1\|40315_40693_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|40759_43726_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|43728_44289_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|44414_44765_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|44967_45981_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|46125_46623_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|46734_47025_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|47030_47822_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|47985_48333_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|48326_49166_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|49570_51112_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_004201169.1\|51424_52456_+	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
WP_004201168.1\|52466_53105_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004201167.1\|53109_53475_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201164.1\|53478_54291_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_001067855.1\|54849_55554_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001398199.1\|56864_57266_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
56612:57084	attR	NA	NA	NA	NA
WP_000557619.1\|57198_57456_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|57548_58202_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_021740570.1\|59125_62143_+\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	7.2e-52	24.7
WP_000130948.1\|62381_63239_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001365705.1\|63231_63306_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083821.1\|63541_63799_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_000156883.1\|64203_65226_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP024038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024038_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024038_1

1059669-1059954

Orphan

Consensus_repeat	Method
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP024038_1

>merge|NZ_CP024038|1|1059669-1059954|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCGCGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAACTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCTTTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

>NZ_CP024038|1|1|1059669-1059954|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCG	CGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAA
CTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	TTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAA
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024038.1\|WP_002917960.1\|1065070_1066642_+\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP024038.1\|WP_002917922.1\|1054990_1055977_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP024038.1\|WP_002917952.1\|1061632_1062523_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP024038.1\|WP_002917916.1\|1053168_1053474_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP024038.1\|WP_002917923.1\|1056103_1056472_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP024038.1\|WP_023284319.1\|1060422_1061568_-\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NZ_CP024038.1\|WP_024264626.1\|1064738_1064963_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024038.1\|WP_004149907.1\|1058481_1058892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226203
NZ_CP024038.1\|WP_002917925.1\|1057514_1058216_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP024038.1\|WP_004144878.1\|1066842_1067706_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP024038.1\|WP_002918211.1\|1070247_1070838_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP024038.1\|WP_004150939.1\|1059197_1059662_+\|OB-fold-putative-lipoprotein	unknown	unknown	gnl\|CDD\|378982
NZ_CP024038.1\|WP_002917917.1\|1053476_1053875_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP024038.1\|WP_002918206.1\|1069835_1070222_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP024038.1\|WP_020802042.1\|1067769_1069878_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP024038.1\|WP_002917920.1\|1054513_1054906_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP024038.1\|WP_040168746.1\|1062549_1063320_-\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP024038.1\|WP_004144865.1\|1056513_1057410_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP024038.1\|WP_002917918.1\|1053871_1054168_+\|membrane-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP024038.1\|WP_004888294.1\|1063346_1064678_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326

Protein	Function_ID	Function_description	E-value
NZ_CP024038.1\|WP_002917960.1\|1065070_1066642_+\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP024038.1\|WP_002917922.1\|1054990_1055977_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP024038.1\|WP_002917952.1\|1061632_1062523_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP024038.1\|WP_002917916.1\|1053168_1053474_+\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	8.38471e-36
NZ_CP024038.1\|WP_002917923.1\|1056103_1056472_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.36085e-39
NZ_CP024038.1\|WP_023284319.1\|1060422_1061568_-\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NZ_CP024038.1\|WP_004149907.1\|1058481_1058892_-\|hypothetical-protein	gnl\|CDD\|226203	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism].	8.17264e-19
NZ_CP024038.1\|WP_002917925.1\|1057514_1058216_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.76429e-64
NZ_CP024038.1\|WP_004144878.1\|1066842_1067706_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP024038.1\|WP_002918211.1\|1070247_1070838_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.29713e-142
NZ_CP024038.1\|WP_004150939.1\|1059197_1059662_+\|OB-fold-putative-lipoprotein	gnl\|CDD\|378982	pfam12869, tRNA_anti-like, tRNA_anti-like. This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.	3.01553e-44
NZ_CP024038.1\|WP_002917917.1\|1053476_1053875_+\|membrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.16468e-44
NZ_CP024038.1\|WP_002918206.1\|1069835_1070222_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	6.84829e-53
NZ_CP024038.1\|WP_020802042.1\|1067769_1069878_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	4.36981e-121
NZ_CP024038.1\|WP_002917920.1\|1054513_1054906_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.0965e-24
NZ_CP024038.1\|WP_040168746.1\|1062549_1063320_-\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP024038.1\|WP_004144865.1\|1056513_1057410_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.52e-52
NZ_CP024038.1\|WP_002917918.1\|1053871_1054168_+\|membrane-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.48395e-22
NZ_CP024038.1\|WP_004888294.1\|1063346_1064678_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.25852e-131

>NZ_CP024038.1|WP_004150939.1|1059197_1059662_+|OB-fold-putative-lipoprotein
MLLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK
>NZ_CP024038.1|WP_004149907.1|1058481_1058892_-|hypothetical-protein
MKLITRIAFATLLTTGFSITAQAADVKAAPAPAQDPIVQHLKLTNDQVAKIKSLHQQLESNVQQISQQEIKDGALINVIDSGKWDEKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKVLTPEQRTQVKKDLADALSE
>NZ_CP024038.1|WP_002917925.1|1057514_1058216_+|pirin-family-protein
MITTRTAKQCGQADFGWLQARYTFSFGHYFDPKLLGFASLRVLNQEVLAPGASFQARTYPKVDILNLILEGEAEYRDSDGNHVQAKAGEALLIATQPGVSYSEHNLSKEQSLTRMQLWLDACPQRENPLQQKINVADATLQLLASPEGGDNSLQLRQQAWVYHIALEKGEQINVQLHGPRAYLQSIHGSVHAVAQEQQKQALTCGDGAFIRDEANITLVADTPLRALLIDLPV
>NZ_CP024038.1|WP_004144865.1|1056513_1057410_-|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
>NZ_CP024038.1|WP_002917923.1|1056103_1056472_+|DUF805-domain-containing-protein
MDWYLKVLKNYIGFGGRARRKEYWMFILVNLILTGVLSIIDKMLGWQRAGGEGILTTIYGVLVFLPWWAVQFRRLHDTDRSAWWLLLLLIPVIGWLVILIFNCQRGTEGNNRFGPDPKPFSY
>NZ_CP024038.1|WP_002917922.1|1054990_1055977_+|glutathione-S-transferase-family-protein
MGQLVDGVWQDTWYDTKSTGGRFKRSVSAFRNWLTADGAAGPSGEGGFAAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFLPVSVVNPLMLENGWTFDDSFPEATGDTLYQHDFLYQLYLHADPHYTGRVTVPVLWDKKQQTIVSNESAEIIRMFNTAFDGLGARAGDYYPPALREQIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKRRISDYLNLYGFLRDIYQMPGIAETVSFPHIRHHYYRSHKTINPTGIISIGPQQDLNEPHGRDQRFR
>NZ_CP024038.1|WP_002917920.1|1054513_1054906_+|DoxX-family-protein
MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGALLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTIAGGYLLLAITGPGAFSIDRVLNKKW
>NZ_CP024038.1|WP_002917918.1|1053871_1054168_+|membrane-protein
MNGRQERERQKTQLLRQIQQQRLELSACRRHWHEATAPLDRGWHTLLSLRSWLMVGSGLMAVWSVRHPHFLMRWTKRGLGLWSTWRLVRGILRQSAVR
>NZ_CP024038.1|WP_002917917.1|1053476_1053875_+|membrane-protein
MANTQHTQGPGQRVFSIGQRIVTLLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDAQYRLHVMIATTVVLLLAAAIVGILTLRKARRSTLLRLTRKELENDRALLEEDKS
>NZ_CP024038.1|WP_002917916.1|1053168_1053474_+|DUF883-domain-containing-protein
MAKENVTDDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESRARLGETSEAILRQTRETAARADDYVRENPWTGVGIGAAVGLVLGVLLSRR
>NZ_CP024038.1|WP_023284319.1|1060422_1061568_-|glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSLPVADGGEGTVEAMIAATQGKEHFAWVTGPLGERVKACWGMSGDGVTAFIEMAAASGLGLVPPDKRNPLITTSRGTGELILQALEHGAERIIIGIGGSATNDGGAGMMQALGARLCDAEGQEIGHGGGSLSRLSRIDLSAIDPRLRDRMIHVACDVTNPLVGEHGASRIFGPQKGATEAMIVELDRNLAHYADVIKTSLQVDVKSIPGAGAAGGMGAALMAFLNAELRSGIEIVTEALKLEEQIHDCSLVVTGEGRLDSQSVHGKVPVGVARVAKKYRKPVIGIAGSLTHDVGVVHQHGIDAVFSVLTSVSTLEEAFRGAFDNIYRASRNIAATLQVGMTTEG
>NZ_CP024038.1|WP_002917952.1|1061632_1062523_-|2-hydroxy-3-oxopropionate-reductase
MTIKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETATTPKAIAEQCEVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>NZ_CP024038.1|WP_040168746.1|1062549_1063320_-|2-dehydro-3-deoxyglucarate-aldolase
MDNAIFPNKFKAALAAHQVQIGCWCALANPISTEVLGLAGFDWLVLDAEHAPNDVTTLIPQLMALKGSSSAQVVRVPTNEPIIIKRMLDIGFYNFLVPFVETAEQAAQAVASTRYPPEGIRGVSVSHRGNMFGTVPDYFAQSNKNISILVQIESQTGVDNVEAIAATEGVDGVFVGPSDLAAALGHLGNAAHPEVQRAIQYIFASAKKHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATHKLADAFKK
>NZ_CP024038.1|WP_004888294.1|1063346_1064678_-|MFS-transporter
MILDSTLDEKKGMPTRYLILLMIFVVTAVNYGDRATLSIAGTEVAKELGLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYSYSLFFWSLFTFLQGFIDVFPLAWAGVSMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTIIWVKFVHNPTDHPRMSAAELKYISEGGAVVDMDHKKEATPAAGPKMDYIRQLLTNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQDKGMSILKVGFVASIPALFGFAGGVLGGLFSDYLIGRGCTLTFARKLPIVLGMLLASSIILCNYTASTPLVITLMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVSELHSFNGALIFVGGSALMMMVCYLFVVGDIKRMELQK
>NZ_CP024038.1|WP_024264626.1|1064738_1064963_-|hypothetical-protein
MIGITPFYDANLCRAGNRKKCGLAPMTYGISTIMALNNNFILWVCIVSGGGVLIILSHVFEVIDMRIDSFNIVF
>NZ_CP024038.1|WP_002917960.1|1065070_1066642_+|galactarate-dehydratase
MADIAIRQQSPTAFYIKVDPTDNVAIIVNDRGLTAGTRFPDGLTLVEHIPQGHKVALVDIPAHGEIIRYGEVIGYAVRDIPQGSWIDESLVELPTAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPNYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLQGTEDVKSIPVDSASIVSLQDEKHVGFKSMVDDILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGRKLFEFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>NZ_CP024038.1|WP_004144878.1|1066842_1067706_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHESADNSQGQLYIVPTPIGNLSDITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLKEGQNIALVSDAGTPLINDPGYHLVRTCREANIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDTLKALEEEPRTLIFYESTHRLVESLEDICAVLGESRYVVLARELTKTWESIHGAPIGELVAWVKEDENRRKGEMVLIVEGFKAQEEALPAAALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQGE
>NZ_CP024038.1|WP_020802042.1|1067769_1069878_+|penicillin-binding-protein-activator
MVPSTFLRSKPARCLPVLLATLIFAGCGTHTQDQSAAFMQGTSQANSSFYLQQMQQSTNDSKTNWQLLAIRALLQEGKKQQAIDLFNQLPANLNSTQAREQSLLAVEVKLAQNDYQAARNLLAKIDPTNLEQPQQARYWQAQIDASQGKPSLTLLRALIAQQPLLSDAKQRQKNIDATWQALTSMPQDQANALVINADENILQGWLDLQRMWFDNRNDPTLLKAGVKDWQTRYPQNPGAKMLPTALVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAAKNGAPSVTGSAVPAQVAQAANVSGNDDVVSPSQAEISDLTATGSRADPVQAPTQDQAAPAAEPAAQAPATSTTPQTTASPATQPVTAPAAQPQPVVATAANPSAELKIYDTTSQPISQLLAQAQQDGATLVVGPLLKENVEEVIKSNTPLNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPLLLVPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNGGGGIALSGTPVSTLPSAQNSILGSADEMPVSSGGSVDAAYILATPEQIAYIKPMIAMRNGSQSNVTLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGSNPSLMQQALSAVRNDYSLARLYAMGADAWSLANHFTQMRQTPGFELNGNTGDLTANQDCVINRKLSWLKYQQGKIVPAS
>NZ_CP024038.1|WP_002918206.1|1069835_1070222_+|YraN-family-protein
MAQVPAGKNRSGQLSKQTGDAWENQARRWLEGQGLRFIAANARERGGEIDLIMRDGTVTVFIEVRYRRSARYGDAAASVTPQKQQRLLKAARLWLCRQNGSFETVDCRFDVVAFTGNDIQWLKNAFGE
>NZ_CP024038.1|WP_002918211.1|1070247_1070838_+|DnaA-initiator-associating-protein-DiaA
MLDRIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPGLPAIALNTDNVVLTAIANDRLHDEIYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD

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Crispr_ID: NZ_CP024038_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024038_2

2487284-2487369

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024038_2

>merge|NZ_CP024038|2|2487284-2487369|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP024038|2|1|2487284-2487369|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024038.1\|WP_002888345.1\|2487466_2488831_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP024038.1\|WP_002888332.1\|2483968_2484796_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP024038.1\|WP_004178574.1\|2490296_2493203_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP024038.1\|WP_002888324.1\|2478222_2479044_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP024038.1\|WP_002888373.1\|2501290_2502058_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP024038.1\|WP_023343000.1\|2479040_2480030_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP024038.1\|WP_004147026.1\|2481376_2483725_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP024038.1\|WP_002888337.1\|2484828_2485527_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP024038.1\|WP_002888323.1\|2477842_2478220_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP024038.1\|WP_016531719.1\|2495923_2496619_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP024038.1\|WP_004177431.1\|2476989_2477838_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP024038.1\|WP_002888320.1\|2475916_2476396_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP024038.1\|WP_002888329.1\|2480035_2481322_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP024038.1\|WP_023342999.1\|2493390_2495748_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP024038.1\|WP_004177424.1\|2496756_2498259_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP024038.1\|WP_023302315.1\|2485516_2487142_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP024038.1\|WP_004177427.1\|2489624_2490284_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP024038.1\|WP_004145972.1\|2500316_2501162_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP024038.1\|WP_002888347.1\|2489010_2489550_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP024038.1\|WP_023342998.1\|2498269_2499979_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221

Protein	Function_ID	Function_description	E-value
NZ_CP024038.1\|WP_002888345.1\|2487466_2488831_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP024038.1\|WP_002888332.1\|2483968_2484796_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP024038.1\|WP_004178574.1\|2490296_2493203_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP024038.1\|WP_002888324.1\|2478222_2479044_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP024038.1\|WP_002888373.1\|2501290_2502058_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP024038.1\|WP_023343000.1\|2479040_2480030_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP024038.1\|WP_004147026.1\|2481376_2483725_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP024038.1\|WP_002888337.1\|2484828_2485527_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP024038.1\|WP_002888323.1\|2477842_2478220_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP024038.1\|WP_016531719.1\|2495923_2496619_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP024038.1\|WP_004177431.1\|2476989_2477838_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP024038.1\|WP_002888320.1\|2475916_2476396_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP024038.1\|WP_002888329.1\|2480035_2481322_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP024038.1\|WP_023342999.1\|2493390_2495748_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP024038.1\|WP_004177424.1\|2496756_2498259_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP024038.1\|WP_023302315.1\|2485516_2487142_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
NZ_CP024038.1\|WP_004177427.1\|2489624_2490284_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP024038.1\|WP_004145972.1\|2500316_2501162_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP024038.1\|WP_002888347.1\|2489010_2489550_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP024038.1\|WP_023342998.1\|2498269_2499979_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0

>NZ_CP024038.1|WP_023302315.1|2485516_2487142_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP024038.1|WP_002888337.1|2484828_2485527_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP024038.1|WP_002888332.1|2483968_2484796_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP024038.1|WP_004147026.1|2481376_2483725_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP024038.1|WP_002888329.1|2480035_2481322_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP024038.1|WP_023343000.1|2479040_2480030_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP024038.1|WP_002888324.1|2478222_2479044_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP024038.1|WP_002888323.1|2477842_2478220_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP024038.1|WP_004177431.1|2476989_2477838_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP024038.1|WP_002888320.1|2475916_2476396_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP024038.1|WP_002888345.1|2487466_2488831_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP024038.1|WP_002888347.1|2489010_2489550_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP024038.1|WP_004177427.1|2489624_2490284_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP024038.1|WP_004178574.1|2490296_2493203_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP024038.1|WP_023342999.1|2493390_2495748_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP024038.1|WP_016531719.1|2495923_2496619_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP024038.1|WP_004177424.1|2496756_2498259_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP024038.1|WP_023342998.1|2498269_2499979_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP024038.1|WP_004145972.1|2500316_2501162_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP024038.1|WP_002888373.1|2501290_2502058_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: NZ_CP024038_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024038_3

3357825-3357902

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024038_3

>merge|NZ_CP024038|3|3357825-3357902|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP024038|3|2|3357825-3357902|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024038.1\|WP_002895655.1\|3365129_3367151_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP024038.1\|WP_023302145.1\|3362284_3363040_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP024038.1\|WP_004183472.1\|3354276_3355803_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP024038.1\|WP_004151699.1\|3352591_3354280_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP024038.1\|WP_048289836.1\|3342888_3343974_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP024038.1\|WP_002895648.1\|3363032_3363755_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP024038.1\|WP_004151701.1\|3367328_3367421_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024038.1\|WP_002895652.1\|3364505_3364718_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024038.1\|WP_004152853.1\|3363696_3364419_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP024038.1\|WP_004183475.1\|3361143_3362301_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP024038.1\|WP_004212869.1\|3344507_3344939_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NZ_CP024038.1\|WP_002895575.1\|3358056_3358533_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP024038.1\|WP_002895358.1\|3351723_3352449_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP024038.1\|WP_004223758.1\|3358603_3359893_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP024038.1\|WP_024622871.1\|3349491_3350709_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP024038.1\|WP_004142122.1\|3347951_3349235_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP024038.1\|WP_002895580.1\|3360106_3361147_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP024038.1\|WP_048289837.1\|3344990_3347678_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP024038.1\|WP_023302146.1\|3350705_3351662_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP024038.1\|WP_004147672.1\|3355901_3357284_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566

Protein	Function_ID	Function_description	E-value
NZ_CP024038.1\|WP_002895655.1\|3365129_3367151_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP024038.1\|WP_023302145.1\|3362284_3363040_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.36239e-160
NZ_CP024038.1\|WP_004183472.1\|3354276_3355803_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP024038.1\|WP_004151699.1\|3352591_3354280_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP024038.1\|WP_048289836.1\|3342888_3343974_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.73563e-65
NZ_CP024038.1\|WP_002895648.1\|3363032_3363755_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP024038.1\|WP_004152853.1\|3363696_3364419_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP024038.1\|WP_004183475.1\|3361143_3362301_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP024038.1\|WP_004212869.1\|3344507_3344939_+\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	7.32546e-44
NZ_CP024038.1\|WP_002895575.1\|3358056_3358533_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP024038.1\|WP_002895358.1\|3351723_3352449_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP024038.1\|WP_004223758.1\|3358603_3359893_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP024038.1\|WP_024622871.1\|3349491_3350709_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP024038.1\|WP_004142122.1\|3347951_3349235_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP024038.1\|WP_002895580.1\|3360106_3361147_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP024038.1\|WP_048289837.1\|3344990_3347678_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP024038.1\|WP_023302146.1\|3350705_3351662_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	6.77924e-178
NZ_CP024038.1\|WP_004147672.1\|3355901_3357284_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0

>NZ_CP024038.1|WP_004147672.1|3355901_3357284_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP024038.1|WP_004183472.1|3354276_3355803_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLIGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP024038.1|WP_004151699.1|3352591_3354280_+|urocanate-hydratase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP024038.1|WP_002895358.1|3351723_3352449_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP024038.1|WP_023302146.1|3350705_3351662_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLARLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>NZ_CP024038.1|WP_024622871.1|3349491_3350709_+|imidazolonepropionase
MTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASMHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP024038.1|WP_004142122.1|3347951_3349235_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP024038.1|WP_048289837.1|3344990_3347678_+|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVKTLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEQVGKIYAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NZ_CP024038.1|WP_004212869.1|3344507_3344939_+|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALTDELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NZ_CP024038.1|WP_048289836.1|3342888_3343974_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPALIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVAVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL
>NZ_CP024038.1|WP_002895575.1|3358056_3358533_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP024038.1|WP_004223758.1|3358603_3359893_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP024038.1|WP_002895580.1|3360106_3361147_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP024038.1|WP_004183475.1|3361143_3362301_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>NZ_CP024038.1|WP_023302145.1|3362284_3363040_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAISELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP024038.1|WP_002895648.1|3363032_3363755_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP024038.1|WP_004152853.1|3363696_3364419_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP024038.1|WP_002895652.1|3364505_3364718_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP024038.1|WP_002895655.1|3365129_3367151_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP024038.1|WP_004151701.1|3367328_3367421_+|hypothetical-protein
MQKINFREYLAVATALVIIVAFFHQWVLTF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

313 : 7218

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004149058.1\|313_1792_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
WP_004175198.1\|1788_2511_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004144192.1\|2829_4191_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_002912636.1\|4436_5330_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004180550.1\|5570_6344_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004175147.1\|6354_7218_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_2

206112 : 266044

Enterobacteria_phage(17.78%)

tRNA,terminase,holin,protease,portal,head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009307375.1\|206112_206925_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_002913227.1\|206924_207938_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_009307374.1\|208001_209138_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.6e-20	27.8
WP_023282884.1\|209248_210226_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_004149211.1\|210312_211488_-	MFS transporter	NA	NA	NA	NA
WP_002913291.1\|211697_212918_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_023301691.1\|213076_215065_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002913338.1\|215126_215408_-	YfcL family protein	NA	NA	NA	NA
WP_002913339.1\|215439_215988_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_002913340.1\|215987_216797_-	TSUP family transporter	NA	NA	NA	NA
WP_004174960.1\|216796_217621_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_023287874.1\|217623_218709_-	chorismate synthase	A0A291AU41	Pandoravirus	7.7e-89	46.6
WP_040181913.1\|218750_219683_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002913348.1\|219850_220402_+	endonuclease SmrB	NA	NA	NA	NA
WP_002913355.1\|220422_220908_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_004174952.1\|221117_223262_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_002913358.1\|223261_224572_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_002913359.1\|224731_225016_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_004149222.1\|225383_226712_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_002913362.1\|226773_227535_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_004149224.1\|227824_228754_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4
WP_032422721.1\|228960_229332_-	hypothetical protein	K7PGV5	Enterobacterial_phage	9.2e-26	50.9
WP_019705521.1\|229288_229528_-	hypothetical protein	I6PD82	Cronobacter_phage	1.5e-21	55.7
WP_077255527.1\|230078_230531_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_019705523.1\|230620_230980_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004190607.1\|231631_232054_-	hypothetical protein	K7P834	Enterobacteria_phage	8.0e-26	44.5
WP_074177881.1\|232131_232314_-	helix-turn-helix domain-containing protein	A0A286S1P7	Klebsiella_phage	1.5e-18	88.9
WP_040181868.1\|232325_233126_-	hypothetical protein	NA	NA	NA	NA
WP_040181865.1\|235171_238249_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.1
WP_040181864.1\|238245_238626_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.5e-58	81.0
WP_040181862.1\|238638_239115_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.4e-49	63.9
WP_004884312.1\|239101_239575_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_040181859.1\|239596_242983_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	4.7e-302	57.7
WP_016530182.1\|243043_243277_-	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_004177139.1\|243350_243656_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_021313622.1\|243658_244063_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
WP_040181857.1\|244093_244798_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.6e-79	66.5
WP_016530186.1\|244854_245202_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_019705270.1\|245198_245648_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_019705271.1\|245644_245983_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	68.8
WP_019705272.1\|245991_246309_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	7.4e-24	52.9
WP_040181854.1\|246386_247625_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.9e-153	67.0
WP_000999827.1\|247634_248234_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_000923127.1\|248226_249453_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	2.5e-208	85.3
WP_064162524.1\|249600_251352_-\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	3.3e-251	72.0
WP_001119413.1\|251355_251853_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.4e-63	71.3
WP_040181844.1\|252011_252362_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	4.1e-52	81.0
WP_040181841.1\|252434_252890_+	hypothetical protein	NA	NA	NA	NA
WP_077256034.1\|252925_253051_-	hypothetical protein	M1FJ79	Enterobacteria_phage	2.4e-07	66.7
WP_040181839.1\|253088_253277_-	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	3.2e-19	77.0
WP_040181834.1\|253537_253813_-	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-05	80.6
WP_040181832.1\|253815_254445_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	2.5e-87	75.4
WP_000243811.1\|254444_254726_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.8e-19	48.4
WP_001294159.1\|254712_255099_-	membrane protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
WP_094083851.1\|255338_255944_-	hypothetical protein	NA	NA	NA	NA
WP_040181825.1\|256050_256629_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_040181823.1\|256642_257623_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.4e-135	66.9
WP_040181820.1\|257635_258013_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
WP_040181816.1\|258022_258832_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.3e-109	68.9
WP_060618150.1\|258828_259743_-	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	57.3
WP_071557781.1\|259699_259912_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.4e-16	70.9
WP_004213338.1\|260149_260611_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_016530206.1\|260636_260834_-	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
WP_032408726.1\|260938_261586_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
WP_040181807.1\|262432_262732_+	hypothetical protein	NA	NA	NA	NA
WP_040181805.1\|262731_263517_+	hypothetical protein	A4JX52	Burkholderia_virus	7.6e-62	50.6
WP_040181802.1\|263516_264593_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.5e-148	73.8
WP_040181799.1\|265184_265397_+	hypothetical protein	R9TNC2	Aeromonas_phage	8.6e-37	97.1
WP_040181798.1\|265396_266044_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.2e-44	57.3

DBSCAN-SWA_3

2951523 : 3004359

Klebsiella_phage(42.86%)

tRNA,terminase,holin,protease,portal,head,capsid,integrase,tail

attL 2964233:2964279|attR 3004831:3004877

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002892267.1\|2951523_2952150_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_004146399.1\|2952117_2952804_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-31	35.7
WP_004183225.1\|2952800_2955215_+	ABC transporter permease	NA	NA	NA	NA
WP_004142997.1\|2955396_2956542_+	porin	NA	NA	NA	NA
WP_004151323.1\|2956649_2957726_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_040182117.1\|2957837_2958905_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_020802618.1\|2958901_2959411_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_004893771.1\|2959507_2959846_-	hypothetical protein	NA	NA	NA	NA
WP_004151320.1\|2959953_2960676_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_004151319.1\|2960679_2961174_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_004143010.1\|2961349_2962735_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004143016.1\|2962780_2962993_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|2962994_2963861_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
2964233:2964279	attL	NA	NA	NA	NA
WP_021441323.1\|2964292_2965456_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
WP_071531921.1\|2965332_2965668_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_040182114.1\|2965669_2965888_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_040182113.1\|2965884_2966412_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182112.1\|2966440_2967064_-	exonuclease	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182110.1\|2967060_2967807_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182107.1\|2967823_2968108_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_069914298.1\|2968115_2969087_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.3e-39	76.8
WP_008807814.1\|2969167_2969374_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_061355324.1\|2969810_2970014_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.9e-18	70.1
WP_032429932.1\|2970379_2970745_-	hypothetical protein	A0A1P8DTD0	Proteus_phage	1.3e-19	49.1
WP_020804196.1\|2971006_2971126_-	hypothetical protein	NA	NA	NA	NA
WP_004191591.1\|2971186_2971846_-	helix-turn-helix domain-containing protein	K7P7K3	Enterobacteria_phage	8.3e-70	62.4
WP_004191589.1\|2971954_2972173_+	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.4e-13	50.7
WP_043875707.1\|2972212_2972434_+	bacteriophage CII family protein	NA	NA	NA	NA
WP_024622726.1\|2972519_2973317_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	3.5e-91	72.8
WP_064155319.1\|2973376_2974342_+	replication protein	K7PGZ0	Enterobacteria_phage	2.6e-64	78.0
WP_040181695.1\|2974338_2975076_+	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_004218528.1\|2975072_2975375_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181698.1\|2975371_2975794_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_040181701.1\|2975790_2976051_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_004141386.1\|2976582_2976795_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_087750241.1\|2977423_2977837_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.1e-11	34.6
WP_040181178.1\|2978337_2978793_+	hypothetical protein	K7P7B8	Enterobacteria_phage	4.0e-55	68.2
WP_040181180.1\|2978792_2978963_+	NinE family protein	G8C7V4	Escherichia_phage	1.7e-14	73.2
WP_040181182.1\|2978955_2979594_+	bacteriophage Lambda NinG protein	H6WRY9	Salmonella_phage	1.2e-73	68.4
WP_040181184.1\|2979590_2979731_+	YlcG family protein	NA	NA	NA	NA
WP_040181186.1\|2979727_2980537_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-116	75.1
WP_031281242.1\|2980915_2981173_+	hypothetical protein	A0A286N2Q3	Klebsiella_phage	2.8e-42	98.8
WP_032416155.1\|2981078_2981525_-	hypothetical protein	NA	NA	NA	NA
WP_017145563.1\|2982087_2982483_+	membrane protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_019705280.1\|2982469_2982751_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_058842802.1\|2982750_2983380_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.7e-104	89.0
WP_020317342.1\|2983387_2983663_+	hypothetical protein	G8C7W1	Escherichia_phage	1.4e-15	52.8
WP_032420712.1\|2983613_2983805_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.2e-22	88.1
WP_032426434.1\|2983836_2984037_+	hypothetical protein	K7PHC3	Enterobacterial_phage	7.9e-16	65.1
WP_004216876.1\|2984101_2984347_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_023301206.1\|2984418_2984625_+	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	5.1e-34	97.1
WP_017880218.1\|2984696_2984987_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.4e-53	99.0
WP_017880219.1\|2984999_2985209_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	7.0e-31	100.0
WP_004143905.1\|2985330_2985765_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_004143904.1\|2985774_2987307_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_017880221.1\|2987309_2988587_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077254200.1\|2988592_2989273_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_058842800.1\|2989284_2990448_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.1e-213	100.0
WP_044067369.1\|2990484_2990727_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|2990674_2991001_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|2991061_2991259_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_004184710.1\|2991260_2991593_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.1e-57	100.0
WP_000763233.1\|2991585_2992125_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	1.0e-94	100.0
WP_000561415.1\|2992121_2992487_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_000115125.1\|2992543_2993035_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_004899623.1\|2993078_2993462_+	hypothetical protein	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_004899621.1\|2993464_2993728_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	7.9e-40	90.8
WP_058842799.1\|2993791_2994169_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_058842798.1\|2994230_2996777_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.6
WP_004899614.1\|2996776_2997256_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_032412796.1\|2997242_2997725_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.6e-83	96.9
WP_017880229.1\|2997734_2998115_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
WP_058842797.1\|2998111_3001171_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	91.0
WP_071854268.1\|3003213_3004014_+	hypothetical protein	NA	NA	NA	NA
WP_040181289.1\|3004119_3004359_+	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
3004831:3004877	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3734329 : 3803945

Enterobacteria_phage(51.43%)

tRNA,terminase,plate,portal,head,capsid,integrase,tail

attL 3761525:3761542|attR 3798701:3798718

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004150803.1\|3734329_3735436_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004150802.1\|3735492_3735951_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004150801.1\|3735967_3736618_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150800.1\|3736858_3738109_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004213085.1\|3738381_3739095_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150798.1\|3739091_3739484_-	amino acid-binding protein	NA	NA	NA	NA
WP_004150797.1\|3739476_3739800_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_019704434.1\|3740042_3740228_+	hypothetical protein	NA	NA	NA	NA
WP_004140530.1\|3740248_3740476_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140529.1\|3740588_3741782_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_137013050.1\|3741997_3742186_-	hypothetical protein	NA	NA	NA	NA
WP_004150795.1\|3742405_3742591_+	general stress protein	NA	NA	NA	NA
WP_004148027.1\|3742681_3743176_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|3743202_3743709_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004179357.1\|3743725_3744613_+	manganese catalase family protein	NA	NA	NA	NA
WP_004140511.1\|3744668_3746075_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004183659.1\|3746071_3747082_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|3747197_3747395_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3747961_3748594_+	DNA-binding protein	NA	NA	NA	NA
WP_153236426.1\|3748572_3748761_-	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3749210_3749897_+	EAL domain-containing protein	NA	NA	NA	NA
WP_023302066.1\|3750207_3751716_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_021313530.1\|3751836_3752727_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023302065.1\|3752733_3754518_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004140494.1\|3754591_3755800_-	HD domain-containing protein	NA	NA	NA	NA
WP_004150784.1\|3756102_3757146_+	type II asparaginase	NA	NA	NA	NA
WP_023302064.1\|3757807_3758722_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|3758811_3759450_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|3759580_3759844_+	DUF2534 family protein	NA	NA	NA	NA
WP_004140488.1\|3759903_3760029_-	hypothetical protein	NA	NA	NA	NA
WP_004892898.1\|3760146_3760221_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|3760220_3760322_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_004176549.1\|3760379_3761393_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3761525:3761542	attL	NA	NA	NA	NA
WP_040181453.1\|3761657_3762641_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
WP_004213095.1\|3762756_3763056_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_020806130.1\|3763176_3763455_+	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004216643.1\|3763475_3763694_+	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_040181449.1\|3763709_3764087_+	hypothetical protein	NA	NA	NA	NA
WP_023329526.1\|3764102_3764375_+	hypothetical protein	NA	NA	NA	NA
WP_004213098.1\|3764443_3764668_+	hypothetical protein	NA	NA	NA	NA
WP_023329528.1\|3764664_3765231_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
WP_040181444.1\|3765463_3766420_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
WP_040181442.1\|3769309_3771580_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_040181440.1\|3771579_3772371_-	hypothetical protein	NA	NA	NA	NA
WP_048289843.1\|3773215_3774277_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
WP_040181438.1\|3774270_3775998_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
WP_040181436.1\|3776154_3776994_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_023328071.1\|3777003_3778038_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_040181433.1\|3778087_3778945_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	61.3
WP_040181431.1\|3779057_3779573_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
WP_004131559.1\|3779572_3779773_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_004213110.1\|3779763_3780048_+	hypothetical protein	NA	NA	NA	NA
WP_023339943.1\|3780044_3780590_+	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_158246032.1\|3780776_3781112_+	peptidase	B6SD31	Bacteriophage	2.1e-05	33.3
WP_040181428.1\|3781112_3781580_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
WP_020316957.1\|3781576_3782212_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_009486481.1\|3782208_3782796_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_040181426.1\|3782792_3783143_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
WP_023300878.1\|3783144_3784068_+	hypothetical protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040181424.1\|3784057_3787084_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_023339950.1\|3787080_3787293_+	hypothetical protein	NA	NA	NA	NA
WP_040181419.1\|3787292_3788390_+\|tail	tail fiber protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
WP_052450975.1\|3788989_3790213_+	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
WP_040181417.1\|3790230_3790893_+	hypothetical protein	NA	NA	NA	NA
WP_040181415.1\|3791356_3791830_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
WP_040181412.1\|3791845_3794821_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
WP_075604421.1\|3794807_3794966_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_004131585.1\|3794965_3795283_-	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_004216461.1\|3795328_3795844_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_040181409.1\|3795843_3797016_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
WP_040181406.1\|3797170_3798310_+	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
WP_004213128.1\|3798353_3798605_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_004176548.1\|3798869_3799109_+	DUF333 domain-containing protein	NA	NA	NA	NA
3798701:3798718	attR	NA	NA	NA	NA
WP_004150779.1\|3799098_3799455_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_020802835.1\|3799441_3799951_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004140471.1\|3800096_3800789_+	CTP synthase	NA	NA	NA	NA
WP_004148041.1\|3800820_3802005_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_002901073.1\|3802106_3802898_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|3802881_3803328_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004892876.1\|3803444_3803945_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

3923317 : 3938949

Salmonella_phage(50.0%)

integrase

attL 3920241:3920254|attR 3939320:3939333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3920241:3920254	attL	NA	NA	NA	NA
WP_004140269.1\|3923317_3924127_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004140266.1\|3924128_3925121_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004151901.1\|3925120_3926011_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_086528371.1\|3926187_3927375_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
WP_004892750.1\|3927595_3927835_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_048289847.1\|3927842_3928151_-	hypothetical protein	I6PD68	Cronobacter_phage	4.6e-23	55.9
WP_016160779.1\|3928147_3928759_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.9e-40	75.3
WP_004190719.1\|3928751_3929090_-	hypothetical protein	NA	NA	NA	NA
WP_048289848.1\|3929124_3930234_-	recombinase RecT	H6WRX0	Salmonella_phage	9.4e-183	85.9
WP_048289849.1\|3930246_3933285_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.0e-292	57.2
WP_012967861.1\|3933422_3933578_-	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	1.2e-14	75.0
WP_004179600.1\|3933586_3933778_-	YebW family protein	NA	NA	NA	NA
WP_101516259.1\|3933884_3933983_-	hypothetical protein	NA	NA	NA	NA
WP_050485525.1\|3934166_3934601_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.3e-15	39.0
WP_023320775.1\|3934705_3934933_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	3.4e-15	50.0
WP_032445502.1\|3934935_3935472_+	hypothetical protein	M9NZI6	Enterobacteria_phage	6.3e-60	68.9
WP_004215886.1\|3935822_3936743_+	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.7e-92	61.3
WP_004215885.1\|3936739_3937483_+	replication protein P	A0A0M3ULE2	Salmonella_phage	3.1e-65	55.2
WP_032423776.1\|3937475_3937844_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.9e-11	43.0
WP_019705292.1\|3937840_3938044_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.6e-30	92.5
WP_032445503.1\|3938036_3938273_+	hypothetical protein	A0A2R2Z309	Escherichia_phage	7.1e-32	90.7
WP_032445505.1\|3938748_3938949_+	hypothetical protein	A0A1U8QWK2	Salmonella_phage	3.2e-09	57.5
3939320:3939333	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3943381 : 3964624

Pseudomonas_phage(30.0%)

terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086528372.1\|3943381_3943981_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.8e-90	79.4
WP_048289850.1\|3944189_3944771_+	protein ninG	E7C9S3	Salmonella_phage	2.7e-40	44.8
WP_086528373.1\|3944767_3944908_+	YlcG family protein	NA	NA	NA	NA
WP_048289851.1\|3944904_3945726_+	antitermination protein	K7PKS8	Enterobacteria_phage	5.1e-85	60.6
WP_024176410.1\|3946483_3946783_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_004184488.1\|3946779_3947319_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_048289852.1\|3947315_3947660_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.6e-38	79.8
WP_004190672.1\|3947656_3947932_+	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_048289853.1\|3949020_3950016_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_016946682.1\|3949999_3951313_+\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
WP_048267898.1\|3951314_3952715_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.4e-127	53.5
WP_048289854.1\|3952698_3953811_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.6e-110	55.1
WP_048289855.1\|3954323_3955103_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.7e-67	64.0
WP_048289856.1\|3955113_3956067_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-132	74.4
WP_133060713.1\|3956075_3956348_+	hypothetical protein	NA	NA	NA	NA
WP_048289857.1\|3956388_3956784_+	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	4.3e-13	43.3
WP_048289858.1\|3956785_3957040_+	hypothetical protein	J9Q7U0	Salmonella_phage	3.0e-20	51.2
WP_072072127.1\|3957049_3957283_+	hypothetical protein	A0A1V0E8A3	Vibrio_phage	6.4e-09	49.2
WP_048289859.1\|3957269_3957653_+	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	1.6e-20	43.7
WP_012967909.1\|3957654_3958206_+	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_012967910.1\|3958202_3958595_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_048289860.1\|3958618_3959791_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_012967912.1\|3959845_3960328_+	hypothetical protein	NA	NA	NA	NA
WP_012967913.1\|3960465_3960663_+	hypothetical protein	NA	NA	NA	NA
WP_129693861.1\|3960730_3961129_+	hypothetical protein	NA	NA	NA	NA
WP_077264109.1\|3961708_3964624_+\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-90	34.2

DBSCAN-SWA_7

4234882 : 4245770

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|4234882_4235503_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_032423485.1\|4235495_4236761_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002903955.1\|4236772_4237675_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|4237936_4238698_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001620095.1\|4238718_4239579_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004176262.1\|4239876_4240137_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_040182017.1\|4240223_4241312_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176258.1\|4241342_4242608_-	MFS transporter	NA	NA	NA	NA
WP_040182019.1\|4242662_4245770_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_8

4902790 : 4986082

Escherichia_phage(21.05%)

tRNA,terminase,plate,lysis,head,integrase,coat,tail

attL 4938001:4938016|attR 4985472:4985487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004891136.1\|4902790_4904047_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|4904317_4904929_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004891134.1\|4904925_4905777_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|4905960_4906908_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004189412.1\|4907032_4908712_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.0e-23	23.4
WP_023301802.1\|4908713_4909760_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|4909980_4910256_-	stress-induced protein YchH	NA	NA	NA	NA
WP_009307591.1\|4910528_4911113_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|4911230_4912322_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_004145442.1\|4912402_4912732_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|4912815_4913730_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_048289900.1\|4913861_4915277_-	membrane protein	NA	NA	NA	NA
WP_004152261.1\|4915296_4915740_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_019704158.1\|4915742_4916285_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002910494.1\|4916259_4917306_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_040181246.1\|4917305_4919069_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_029498250.1\|4919202_4922169_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_040181245.1\|4922633_4923845_-	hypothetical protein	NA	NA	NA	NA
WP_108702443.1\|4923849_4924077_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_032413757.1\|4924911_4925319_-	hypothetical protein	NA	NA	NA	NA
WP_004148791.1\|4925811_4926708_-	hypothetical protein	NA	NA	NA	NA
WP_023342696.1\|4926722_4928750_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	2.6e-74	31.6
WP_009307584.1\|4928752_4931380_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-17	31.5
WP_009307583.1\|4931838_4933536_-	OmpA family protein	NA	NA	NA	NA
WP_004175498.1\|4933539_4934193_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307582.1\|4934189_4935530_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002910650.1\|4936095_4936425_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_004899028.1\|4936494_4937079_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|4937104_4937803_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_048289904.1\|4937994_4938477_+	cold shock domain-containing protein	NA	NA	NA	NA
4938001:4938016	attL	NA	NA	NA	NA
WP_074422971.1\|4939451_4939658_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.9e-09	49.2
WP_040181289.1\|4939767_4940007_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
WP_108702444.1\|4940112_4940913_-	hypothetical protein	NA	NA	NA	NA
WP_094083855.1\|4943001_4945479_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	5.1e-197	45.2
WP_094083854.1\|4945465_4945861_-	hypothetical protein	F1C5F2	Cronobacter_phage	9.5e-37	55.6
WP_032419293.1\|4945857_4946328_-	hypothetical protein	R9TPR6	Aeromonas_phage	9.6e-28	40.4
WP_075208395.1\|4946327_4946747_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	48.5
WP_071854269.1\|4946917_4947331_+	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_040181302.1\|4947350_4947530_-	hypothetical protein	NA	NA	NA	NA
WP_040181305.1\|4947570_4950141_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	8.5e-94	40.3
WP_071854270.1\|4950232_4950703_-	hypothetical protein	NA	NA	NA	NA
WP_077255485.1\|4950758_4951010_-	hypothetical protein	H6WRV3	Salmonella_phage	2.8e-26	62.7
WP_094083853.1\|4951192_4951666_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_023339090.1\|4951634_4951832_-	hypothetical protein	NA	NA	NA	NA
WP_040181310.1\|4951978_4952536_-	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	6.7e-89	88.2
WP_040181312.1\|4952753_4953467_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.1e-63	54.6
WP_023339086.1\|4954358_4954742_-	hypothetical protein	NA	NA	NA	NA
WP_040181318.1\|4954738_4955107_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.9e-47	82.0
WP_040181321.1\|4955109_4955472_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.6e-27	50.8
WP_038434988.1\|4955471_4955645_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_032439723.1\|4955644_4956025_-	hypothetical protein	F1C5E2	Cronobacter_phage	4.1e-29	54.5
WP_029884066.1\|4956027_4956267_-	hypothetical protein	NA	NA	NA	NA
WP_094083852.1\|4956299_4957355_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.5e-100	53.0
WP_016529582.1\|4957351_4957813_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_040181327.1\|4957812_4959168_-	hypothetical protein	F1C5D9	Cronobacter_phage	5.1e-130	53.1
WP_020804668.1\|4959218_4959422_+	hypothetical protein	NA	NA	NA	NA
WP_087749279.1\|4959418_4960432_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.8e-116	69.7
WP_040181330.1\|4960349_4961798_-	hypothetical protein	F1C5D7	Cronobacter_phage	2.1e-118	51.0
WP_040181332.1\|4961809_4963378_-\|terminase	terminase	G8C7P3	Escherichia_phage	2.4e-301	91.2
WP_069377345.1\|4963374_4964025_-	hypothetical protein	G8C7P2	Escherichia_phage	6.2e-102	89.4
WP_040181192.1\|4964233_4964701_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_040181191.1\|4964697_4965201_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_012967717.1\|4965203_4965518_-	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
WP_040181186.1\|4966344_4967154_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-116	75.1
WP_040181184.1\|4967150_4967291_-	YlcG family protein	NA	NA	NA	NA
WP_065802495.1\|4967287_4967926_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	68.4
WP_049089532.1\|4967918_4968089_-	NinE family protein	G8C7V4	Escherichia_phage	3.7e-14	71.4
WP_064151812.1\|4968094_4968691_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-56	53.8
WP_087750241.1\|4969096_4969510_-	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.1e-11	34.6
WP_004141386.1\|4970138_4970351_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_040181701.1\|4970882_4971143_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_052450983.1\|4971139_4971592_-	hypothetical protein	R9TME7	Aeromonas_phage	4.4e-14	40.6
WP_040182091.1\|4971828_4972122_-	protein ren	M1FPD5	Enterobacteria_phage	2.1e-25	62.4
WP_040182092.1\|4972118_4972967_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	1.2e-89	60.8
WP_040182094.1\|4972963_4973839_-	replication protein	K7PGT1	Enterobacteria_phage	3.0e-59	49.0
WP_040181693.1\|4973925_4974246_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	7.7e-37	69.8
WP_040182097.1\|4974285_4974507_-	helix-turn-helix domain-containing protein	Q716D6	Shigella_phage	1.8e-13	55.1
WP_029363661.1\|4974609_4975305_+	helix-turn-helix transcriptional regulator	K7P7I4	Enterobacteria_phage	8.2e-76	62.4
WP_129111273.1\|4975324_4975759_+	hypothetical protein	NA	NA	NA	NA
WP_004151303.1\|4976410_4976605_+	hypothetical protein	NA	NA	NA	NA
WP_076996993.1\|4976693_4976978_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.5e-39	78.7
WP_094083903.1\|4976993_4977839_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.5e-68	59.2
WP_129693859.1\|4977835_4978456_+	hypothetical protein	A0A076GAP8	Staphylococcus_phage	5.5e-23	43.8
WP_040181683.1\|4978448_4979135_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_016529279.1\|4979131_4979290_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_040181681.1\|4979286_4979814_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_040181679.1\|4979810_4980581_+	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_065802489.1\|4980797_4981562_+	hypothetical protein	Q71T76	Escherichia_phage	3.0e-71	58.3
WP_040218332.1\|4981558_4981750_+	DUF1382 family protein	G9L698	Escherichia_phage	1.3e-12	64.4
WP_032431536.1\|4981746_4981956_+	hypothetical protein	NA	NA	NA	NA
WP_009483816.1\|4981952_4982171_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
WP_040181674.1\|4982174_4982420_+	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_094083902.1\|4982462_4983725_+\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	2.3e-233	95.0
WP_032413763.1\|4983965_4984772_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004175494.1\|4984786_4986082_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
4985472:4985487	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024040

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP024038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection