CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP029134	Proteus mirabilis strain AR379 plasmid unnamed5	0 crisprs	NA	0	0	0
NZ_CP029130	Proteus mirabilis strain AR379 plasmid unnamed2	0 crisprs	NA	0	0	0
NZ_CP029133	Proteus mirabilis strain AR379 chromosome, complete genome	3 crisprs	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	3	6	11
NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	2 crisprs	NA	0	4	0
NZ_CP029132	Proteus mirabilis strain AR379 plasmid unnamed4	0 crisprs	NA	0	0	0
NZ_CP029131	Proteus mirabilis strain AR379 plasmid unnamed3	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029133_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029133_1

502826-502968

Orphan

Consensus_repeat	Method
CCACCTGTAAAATTGATATCACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029133_1

>merge|NZ_CP029133|1|502826-502968|CRISPRCasFinder
CCACCAGTAAAGTTGGTATTACCATAATTAGAGTTATGTTTTATTACATTTGCTATGCCGCCACCTGTAAAATTGATATCACCTTGTGTAACATCAGATTTAATGACATTACCAGCGCCACCACCTGTGAAATTGATATCACC

>NZ_CP029133|1|1|502826-502968|CRISPRCasFinder
CCACCAGTAAAGTTGGTATTACC	ATAATTAGAGTTATGTTTTATTACATTTGCTATGCCG
CCACCTGTAAAATTGATATCACC	TTGTGTAACATCAGATTTAATGACATTACCAGCGCCA
CCACCTGTGAAATTGATATCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029133.1\|WP_049203012.1\|480538_481642_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|236694
NZ_CP029133.1\|WP_004250354.1\|477695_478448_-\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
NZ_CP029133.1\|WP_004244077.1\|488949_490377_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP029133.1\|WP_060555638.1\|482394_482937_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP029133.1\|WP_004244067.1\|505703_508301_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP029133.1\|WP_108716853.1\|486876_488748_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP029133.1\|WP_004244066.1\|508471_508843_+\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP029133.1\|WP_049203013.1\|479342_480542_-\|transporter	unknown	unknown	gnl\|CDD\|182559
NZ_CP029133.1\|WP_004244080.1\|484197_486864_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP029133.1\|WP_004244059.1\|512499_513399_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_CP029133.1\|WP_004248538.1\|510677_511412_+\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
NZ_CP029133.1\|WP_036973441.1\|511579_512008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029133.1\|WP_012368227.1\|483263_484034_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NZ_CP029133.1\|WP_004244072.1\|504679_504883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029133.1\|WP_004248539.1\|508934_509795_+\|small-conductance-mechanosensitive-channel-MscS	unknown	unknown	gnl\|CDD\|182386
NZ_CP029133.1\|WP_004244058.1\|513559_514216_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP029133.1\|WP_060555640.1\|478450_479065_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP029133.1\|WP_049203011.1\|481740_482184_-\|prepilin-peptidase-dependent-pilin	unknown	unknown	gnl\|CDD\|236718
NZ_CP029133.1\|WP_004244060.1\|512075_512297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029133.1\|WP_004244063.1\|509963_510587_+\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463

Protein	Function_ID	Function_description	E-value
NZ_CP029133.1\|WP_049203012.1\|480538_481642_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|236694	PRK10436, PRK10436, hypothetical protein; Provisional.	1.61652e-179
NZ_CP029133.1\|WP_004250354.1\|477695_478448_-\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	1.19728e-117
NZ_CP029133.1\|WP_004244077.1\|488949_490377_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP029133.1\|WP_060555638.1\|482394_482937_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	2.03006e-131
NZ_CP029133.1\|WP_004244067.1\|505703_508301_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP029133.1\|WP_108716853.1\|486876_488748_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP029133.1\|WP_004244066.1\|508471_508843_+\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	9.00597e-61
NZ_CP029133.1\|WP_049203013.1\|479342_480542_-\|transporter	gnl\|CDD\|182559	PRK10573, PRK10573, protein transport protein HofC.	6.68178e-109
NZ_CP029133.1\|WP_004244080.1\|484197_486864_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP029133.1\|WP_004248538.1\|510677_511412_+\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	6.92322e-114
NZ_CP029133.1\|WP_012368227.1\|483263_484034_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.72207e-168
NZ_CP029133.1\|WP_004244059.1\|512499_513399_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.29397e-161
NZ_CP029133.1\|WP_004248539.1\|508934_509795_+\|small-conductance-mechanosensitive-channel-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	6.51737e-120
NZ_CP029133.1\|WP_004244058.1\|513559_514216_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.44811e-141
NZ_CP029133.1\|WP_060555640.1\|478450_479065_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.63102e-90
NZ_CP029133.1\|WP_049203011.1\|481740_482184_-\|prepilin-peptidase-dependent-pilin	gnl\|CDD\|236718	PRK10574, PRK10574, putative major pilin subunit; Provisional.	1.09342e-54
NZ_CP029133.1\|WP_004244063.1\|509963_510587_+\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	1.63858e-119

>NZ_CP029133.1|WP_004244077.1|488949_490377_+|dihydrolipoyl-dehydrogenase
MSTEIKAQVVVLGAGPAGYSAAFRCADLGLDTVLVERHSTLGGVCLNVGCIPSKALLHVAKVIEEAKALSEHGVVFDAPKTDIDKIRIWKDKVISQLTGGLAGMAKGRKVNVVNGEARFTGSHTLSVEGSEGTTTITFENAIVAAGSRPIELPFIPHEDPRVWDSTDALQLKTVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKLLDAGKAGIEVDDRGFIHVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGMTEKEAKEKGVSYEVATFPWAASGRAIASDCADGMTKLIFDKETNRVIGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLYESIGMAAEVFEGSITDLPNPKAKKKK
>NZ_CP029133.1|WP_108716853.1|486876_488748_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSIEIKVPDIGADEVEVTEVMVKVGDRIEEEQSLITVEGDKASMEVPSPQAGIVKEIKIAVGDKVETGSLIMIFDSEEGAQAPAQEAAPAPSAAAPAASELKEVHVPDIGGDEVEVTEVMVNVGDTISEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVSTGSLIMVFEVAGSAPAPSASAPAPAASAPAASAIKDVNVPDIGGDEVEVTEVMVKVGDTIAEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVKTGSLIMTFEVAGAAPAAQAPAAPAASTSAAPAPSAPAKAPASAPAAKEEFVENEAYVHATPVIRRLAREFGVNLAKVKGTGRKGRILREDVQSYVKELIKRAESAPANAGGGLPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNWVVIPHVNLFDEADITEVEEFRKQQNKEAEKKKLDVKITPLVFVMKAAAKALADMPRFNSSISEDGQKLILKKYINIGIAVDTPNGLVVPVFKDVNKKGILELSYELAEVSKKARAGKLTASDMQGGCFTISSLGGIGTTGFAPIVNAPEVAIMGLSRSSMKPVWNGKEFVPRLMLPMSLSFDHRVIDGADGARFITLINQYMSDLRRLVM
>NZ_CP029133.1|WP_004244080.1|484197_486864_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSDMLKNDVDPIETRDWLQAIDSVIREEGVERAQFLIDQVLKQARNGGLDIALGGSVHSDYINTIPVEDEPAYPGNLELERRIRSAIRWNAVMMVLRASKKDLELGGHMASYQSSATLYEVCFNHFFRAHNDNDGGDLVYFQGHISPGIYARAFLEGRLTEEQLNNFRQEIGGKGLSSYPHPKLMPEFWQFPTVSMGLGPLSAIYQAKFLKYLDHRGLKDTTKQRVYAFLGDGEMDEPESKGAITIAVREKLDNLCFVVNCNLQRLDGPVTGNGKIVNELEGIFAGAGWNVIKVMWGDRWDALLRKDTSGKLIQLMNETLDGDYQTFKSRDGAYVREHFFNRYPETAALVKDMTDDEIWALNRGGHDPKKVFAAFQKAKETKDKPTVILAQTIKGYGMGETAEGKNIAHQVKKMNMDGVKHFRDRFNIPVSDEKVAELPYITFDKDSEEYKYLHARRQELEGYLPARRTRFDEKLEIPTLEDFSQLLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDVKGQILQEGINELGAGASWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAFAYEVAVIMQDGLERMYGDKQENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLESLEGAKGKVQLLGSGSILRHVREAAQILSTEYGIGSDVYSVTSFTELARDGQDCERWNMLHPSEEPRVPYIAQIMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDTSYVIVAALGELAKRGEIDVKVVEEAIKKYNINPEKVNPRLA
>NZ_CP029133.1|WP_012368227.1|483263_484034_+|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYTKIRQPKLSDVIEQQLEHLILEGTLRPGEKLLPERELAKQFDVSRPSLREAIQKLEAKGFLLRRQGGGTFVQDNLWQSFSDPLAQLLSGHPESQFDLLETRHALEGIAAYYAALRGTDDDLERIKASHARIIDAHDKGDIAAESDAVLQYQLIVTEAAHNVVLLHLLRCMVPMLEQNIRQNFEFLYTRKEMLTAVSEHRTQIYQAIINREPEAAREASHRHLAFIEDVLLDMSREHTRRERSLRRLQQHPDLF
>NZ_CP029133.1|WP_060555638.1|482394_482937_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MEIKQGWLTGVKHVPSPNYDNRPEGEIPSLLIIHNISLPPGQFGGPYIDQLFTNTLAVDDHPFFNEIAHLRVSAHCLIRRDGEIVQYVPFTARAWHAGVSFYKGREKCNDFSIGIELEGTDECDFTLQQYQQLSTLTQQLIEHYPGIKENITGHSDVAPGRKTDPGPHFNWSYYRALLAK
>NZ_CP029133.1|WP_049203011.1|481740_482184_-|prepilin-peptidase-dependent-pilin
MNTLNYHSTENGFTLMELMIVIAIISILSSVALPAYHGYIQKAALTDVLQTLSPYRSAVELCHYEHQYNQCHADASFMPQQFRSRYLTDIHVANGVISAKGKAQLEGLTIVMTPAANSKETLPQWQINCTSTNTALQTLCHKVFKSH
>NZ_CP029133.1|WP_049203012.1|480538_481642_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MNNTIHTATEFIEQLLRHSLAQRVSDLHLEPQQNSLRIRARIDNHLVLFSPPDNQLANEILTRLKILANINIAEKRLPQDGQFNWSYQKNNYSIRVATLPTLYGEKIVLRLMNNLQQPQLAQLGFQTIHLTLLKKYLTQPQGMILVTGPTGSGKTLTLYSCLQYLNKDNRNINSIEDPIELPLHGINQTQITEKAGITFATILRALLRQDPDVIMIGEIRDQQTAEIAIKAAQTGHLVLSTLHTNSTQATLARLANLGIAKDLIDSCVKLIISQRLVRCLCSDCKYQSPEQKNFIINNQQIILPNWQATGCQFCYSGYKGRTAIYDCFELAKQSLPSPYALFNSGIELIKKGITSLDEVYQVVGDIE
>NZ_CP029133.1|WP_049203013.1|479342_480542_-|transporter
MKLHFIYRYNALTYQGKWLSGNVVAQSKHEVIDQLIQQQKLPVKIRLYRVIIFQNSDKQYRIQLLEQLALLLHSGLALLPALTLLKEECRYLHWQCVLNDIIFHLNQGGALSKQLSRYPLYFPANLTHFIYIGEESGKLDEVLLLQTTQLKNQRDLIKKIIKAFQYPLFLLLTLIVITISMLIYVLPEYQSLYSAFNTELPMLTLTLIRCSQWFSQYSLIILLFILIISYSYYTIKHHSAKFRDIEQRCWLNLPYLGVLLRYHQLHIIFQIMTITQQAGLPLLQGLKIITEQLTHSLYQRALTDMIAHITQGKSLSSFMRHNPLFPPICYQFISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIALITGTLIIAMYLPVLQLGDTIH
>NZ_CP029133.1|WP_060555640.1|478450_479065_-|dephospho-CoA-kinase
MTYTVALTGGIGSGKTTIANGFASLGVPLVDADVIARLVVEPDSPGLKALQQHFGDTILLPDGKLNRAQLRHIIFQNQQEKAWVNQLLHPLIQQETQKQIQQIRAPYFIWVVPLLVENKLTHLADRILVVDVTEEEQITRTMQRDGVSRDHVLKILQAQAKREQRLAVADDIIENHDNSLNQDEQIKRLHQHYLELAQKSNTGQ
>NZ_CP029133.1|WP_004250354.1|477695_478448_-|cell-division-protein-ZapD
MSEETSTIIFEHPLNEKMRSWLRIENSLIQLNSFQSINSLSSALSFFRAVSEFIEVLDRGEIRAELLKELEKRQKKLQQWLSFPNVDKEIVSHIINELSESACALSKAPRIGQHLKQDKIISLVKQRLSIPGGCCSFDVPTLHLWLNLPQTVRTEKLTCWQEGLYPLQNALNALLTLIRQSDTFKPVLSHSGFYQDSTEEGELLRIKLLASQQIYPQVSGHKNRYAIRFLPLDSEHGTIPSELPFEISCC
>NZ_CP029133.1|WP_004244072.1|504679_504883_-|hypothetical-protein
MIHIPASGFIYMASIIKSMLENPCINKEFEKLIAADLLPILQNETNMTENFTALHLIKKTNNRRIIL
>NZ_CP029133.1|WP_004244067.1|505703_508301_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGVVPKPLDATQTAALVELLKSPPKGEEEFLLDLIVNRVPPGVDEAAYVKAGFLTALAKGETTSPLITPEKAVELLGTMQGGYNIHALIEALDNDKLAPIAAKALSHTLLMFDSFYDVEEKAKAGNVYAKQIMQSWADGEWFTERPELAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALNKKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSKLNMGDVIDIYPYKGEIRNHETNELLETFALKTEVLIDEVRAGGRIPLIIGRGLTSKARSALGLPPSTLFRHAKAVEQSDRGFSLAQKMVGRACGRDGIRPGEYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVHAIPLYAIKEGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELADASAERSAAGCTIKLDKAPIIEYLQSNIVLLKWMIAEGYGDRRTLERRITAMENWLADPQLLEADADAEYAAVIEIDLNEIKEPILCAPNDPDDARLLSEVANSKIDEVFIGSCMTNIGHFRAAGKLLDQHKGQLPTRLWVAPPTKMDAAQLTEEGYYSVFGKSGARIEVPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVASLLGRLPEPQEYLDFINKVDETAEDTYRYLNFDQLEQYTDKATQVIFQTTV
>NZ_CP029133.1|WP_004244066.1|508471_508843_+|YacL-family-protein
MDYEFQRDLTGGILARFSMDHEAIGYWLNDEIQGDISLIDQILTEMDEVKGSEKQWQLIGKEYSLSIDDEEIMVRANTLHFETDDLEEGMSYYDNESIAFCGLDDFATMLQKYRLFILENRRS
>NZ_CP029133.1|WP_004248539.1|508934_509795_+|small-conductance-mechanosensitive-channel-MscS
MNELPASLDEATGWFVANQELFIQYAVNIVAAFLILFIGLFVAKMVSKGVARILTLRHIDATVVTFLSVLVRYTVIAFTLIAVLGRLGVQTASVIAVLGAAGLAVGLALQGSLSNFAAGVLIVIFRPIRAGEYVMIGAVEGTVRDVQIFSTTLRSADDRIIVIPNSKIISSEVINLSREPNRRTQIIVGVAYDADIDKVKKVLGDVVAQDKRIQHNQGVTIRLHEMAPSSLNFVVRVWTTNDDAWPVYWDLMENFKRALDANNIGIPFPQMDVYMHQAQNTVMKAE
>NZ_CP029133.1|WP_004244063.1|509963_510587_+|arginine-exporter-ArgO
MLTTFFQGFLLSAAMILPIGAQNAFVLQQGSKKQYHLMSAFLCALSDVILISGGVFGGSALLSQSEYLLLLITWGGVAFLLWYGWNAFKTAFTKEIELSQHKNQVKSRWRVIVTLVAVTWLNPHVYLDTFVVLGSIGGQLSAELRPWFTFGAVFASISWFFALSLLAAWFSPILSQVTAQRIINLFVGCVMWFIALQLAAQGWKNLF
>NZ_CP029133.1|WP_004248538.1|510677_511412_+|oxidative-stress-defense-protein
MKVKAMVLASMLALGAPSIALAGAVPEGPHITTSGNATIKATPDMATLNIQVSEKAKDAAQAKKQVDERVAKYFAFLKENGVTKEDIDAANIRTQPNYEYDKKAERSVINGYTATRTVDVKIKKLDQLNTLLDGALAAGLNEINNVEFGVNDPEQYKAKAREVAIKNAIQQASSVAKGFGADLGAVYSVSYRAPEATPYPIARMKMDAMALSAPSPEAVKETYQQQSIEFKDYVDVVFELKTAK
>NZ_CP029133.1|WP_036973441.1|511579_512008_-|hypothetical-protein
MADIATLIAKWRNGLEVEIYTENYEFRYGRIKSSRFNASGEESVYYATYFHTRAKPKDNDPFLIITFDPVVGQDDFMFIETIIDHRTYFGSPGASKTKSHIERRSSDLKRRIENGKKISSEPSSSVQNVNKNNNDSPDQENK
>NZ_CP029133.1|WP_004244060.1|512075_512297_-|hypothetical-protein
MSTFIRRSRNVALAIDAGRKSGSANIEGNTPADIQASLLKSLGEFTASIPTTKQQPYVKGSHGANHKKTYFGR
>NZ_CP029133.1|WP_004244059.1|512499_513399_-|LysR-family-transcriptional-regulator-ArgP
MKRPDYRALQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPQPTEQGQKLLALLHQVEMLEEQWLGDENSGSTPLLLSLAVNADSLATWLLPALHPVLTQLPIRLNIQVEDETRTQERLRRGEVVGAISIQPQALPSCLVDQLGALDYLFVASPDFAQRYFANGVTKSSLLKAPAVAFDHLDDMHQAFLQQNFGLSPGSVPCHIVNSSEAFVQLAKQGSTCCMIPHLQIADELKSGELIDLTPGLCQRRMLYWHRFAPESRTMRKVTDALLDYGRKVLKQDEE
>NZ_CP029133.1|WP_004244058.1|513559_514216_+|ribose-5-phosphate-isomerase-RpiA
MTQDELKKAVGWAALEYVKPGTIVGVGTGSTASHFIDALATMKGQIEGAVSSSEASTAKLKSYGIPVFDCNEVDSLDIYVDGADEINHQMQMIKGGGAALTREKIIAAVAKTFVCIVDESKQVDVLGKFPLPVEVIPMARSYVARELVKLGGLPEYRENVVTDNGNVILDVYNLTILNPIELENKINSIAGVVTVGLFANRGADIVLMGTSEGVKTIK

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Crispr_ID: NZ_CP029133_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029133_2

812918-813130

TypeI-E

I-E

Consensus_repeat	Method
TGTGTTCCCCGTATGCACGGGGATGAACCG	CRT
TGTGTTCCCCGTATGCACGGGGATGAACCG	PILER-CR
GTGTTCCCCGTATGCACGGGGATGAACC	CRISPRCasFinder

3 spacers

cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NZ_CP029133_2

>merge|NZ_CP029133|2|812918-813130|CRT,PILER-CR,CRISPRCasFinder
AGTGTTCCCCGTATGCACGGGGATGAACCTCTTCAACGCTCTTTTCGCGCAGCTCTTTTGCTGTGTTCCCCGTATGCACGGGGATGAACCGGTGTAAACCGCATCTTGTTCAGGGATTTCTTTGTGTTCCCCGTATGCACGGGGATGAACCGTAGTTCAATTACGTTGCTATCAAATAGCTTTTGTGTTCCCCGTATGCACGGGGATGAATCG

>NZ_CP029133|2|1|812918-813130|CRT
AGTGTTCCCCGTATGCACGGGGATGAACCT	CTTCAACGCTCTTTTCGCGCAGCTCTTTTGC
TGTGTTCCCCGTATGCACGGGGATGAACCG	GTGTAAACCGCATCTTGTTCAGGGATTTCTT
TGTGTTCCCCGTATGCACGGGGATGAACCG	TAGTTCAATTACGTTGCTATCAAATAGCTTT
TGTGTTCCCCGTATGCACGGGGATGAATCG

>NZ_CP029133|2|1|812919-813069|PILER-CR
GTGTTCCCCGTATGCACGGGGATGAACCTC	TTCAACGCTCTTTTCGCGCAGCTCTTTTGCT
GTGTTCCCCGTATGCACGGGGATGAACCGG	TGTAAACCGCATCTTGTTCAGGGATTTCTTT
GTGTTCCCCGTATGCACGGGGATGAACCG

>NZ_CP029133|2|2|812919-813129|CRISPRCasFinder
GTGTTCCCCGTATGCACGGGGATGAACC	TCTTCAACGCTCTTTTCGCGCAGCTCTTTTGCT
GTGTTCCCCGTATGCACGGGGATGAACC	GGTGTAAACCGCATCTTGTTCAGGGATTTCTTT
GTGTTCCCCGTATGCACGGGGATGAACC	GTAGTTCAATTACGTTGCTATCAAATAGCTTTT
GTGTTCCCCGTATGCACGGGGATGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029133.1\|WP_108716888.1\|816064_817663_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP029133.1\|WP_017627990.1\|819314_820052_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP029133.1\|WP_004250689.1\|808137_808752_-\|thiol:disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|172475
NZ_CP029133.1\|WP_108716891.1\|826447_826591_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP029133.1\|WP_004243721.1\|811531_812788_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP029133.1\|WP_017627985.1\|810760_811204_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP029133.1\|WP_049200714.1\|817649_818237_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP029133.1\|WP_004243729.1\|806566_807148_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP029133.1\|WP_108716887.1\|807167_808073_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP029133.1\|WP_004243731.1\|804405_804897_+\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP029133.1\|WP_108716889.1\|820729_821650_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP029133.1\|WP_017627994.1\|822509_823733_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|183984
NZ_CP029133.1\|WP_012368108.1\|811233_811521_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP029133.1\|WP_004243730.1\|804927_806445_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP029133.1\|WP_049211268.1\|809487_810534_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP029133.1\|WP_108716890.1\|823810_826210_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
NZ_CP029133.1\|WP_036918640.1\|820051_820729_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NZ_CP029133.1\|WP_004243726.1\|808948_809491_+\|NUDIX-hydrolase-YfcD	unknown	unknown	gnl\|CDD\|185291
NZ_CP029133.1\|WP_036918645.1\|818267_819302_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP029133.1\|WP_017627993.1\|821652_821949_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
NZ_CP029133.1\|WP_108716888.1\|816064_817663_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.08313e-138
NZ_CP029133.1\|WP_017627990.1\|819314_820052_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.81256e-48
NZ_CP029133.1\|WP_004250689.1\|808137_808752_-\|thiol:disulfide-oxidoreductase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	6.69466e-96
NZ_CP029133.1\|WP_108716891.1\|826447_826591_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	9.25992e-08
NZ_CP029133.1\|WP_004243721.1\|811531_812788_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP029133.1\|WP_017627985.1\|810760_811204_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.97304e-43
NZ_CP029133.1\|WP_049200714.1\|817649_818237_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.73826e-22
NZ_CP029133.1\|WP_004243729.1\|806566_807148_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	4.72059e-121
NZ_CP029133.1\|WP_108716887.1\|807167_808073_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.01947e-157
NZ_CP029133.1\|WP_004243731.1\|804405_804897_+\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	1.66712e-99
NZ_CP029133.1\|WP_108716889.1\|820729_821650_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.15637e-143
NZ_CP029133.1\|WP_017627994.1\|822509_823733_+\|alanine-racemase	gnl\|CDD\|183984	PRK13340, PRK13340, alanine racemase; Reviewed.	0
NZ_CP029133.1\|WP_012368108.1\|811233_811521_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.22877e-30
NZ_CP029133.1\|WP_004243730.1\|804927_806445_+\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP029133.1\|WP_049211268.1\|809487_810534_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.0595e-83
NZ_CP029133.1\|WP_108716890.1\|823810_826210_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP029133.1\|WP_036918640.1\|820051_820729_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.31526e-57
NZ_CP029133.1\|WP_004243726.1\|808948_809491_+\|NUDIX-hydrolase-YfcD	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	9.13373e-128
NZ_CP029133.1\|WP_036918645.1\|818267_819302_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8909e-120
NZ_CP029133.1\|WP_017627993.1\|821652_821949_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.37501e-60

>NZ_CP029133.1|WP_004243721.1|811531_812788_+|PTS-ascorbate-transporter-subunit-IIC
MDFFRFLMSDVLSEPAILVGLIALIGLIAQKKPATECIKGTVKTIMGFVILGAGAGLVINSLGDFSTIFQHAFGIQGVVPNNEAIVSIAQKSFGKEMALIMFFAMLINILIARLTPWKYIFLTGHHTLFMSMMVAVILATAGLEGAVLVAVGSLVVGVSMVFFPAIAHPYMKKITGSDDVALGHFSTISYVVSGFIGSKFGNKAHSTEEMNVPKSLLFLRDTPVAIAFTMGIIFIITCLFAGDTFVREVSGGKNWFMFSLMQSITFAAGVYIILQGVRMVIAEIVPAFKGISDKLVPNAKPALDCPVVFPYAPNAVLVGFLSSFAAGVIGMFILYALDWTVIIPGVVPHFFVGATAGVFGNATGGRRGAILGAFAQGLLITFLPVFLLPVLGDIGIANTTFSDADFGVIGILLGIIVR
>NZ_CP029133.1|WP_012368108.1|811233_811521_+|PTS-sugar-transporter-subunit-IIB
MKITVVCGNGLGSSLMMEMSIKSILKDLAVNADVDHVDLGSAKGTPSDIYVGTRDIAEQLNAQAVNGKIVSLDNMIDKVAMKEKLSTALRELGAL
>NZ_CP029133.1|WP_017627985.1|810760_811204_+|PTS-sugar-transporter-subunit-IIA
MLKTLLTPDVVQVIPQVKDWREAIKIACQPLIDKGCIEPRYVDAIYKSHEQIGPYYVLGPGIAMPHARPEEGVNQLSLALTIIEKGVEFGANENDPVKLLIVLAATDNDSHINAIVKLAELFDNQDDIDTLLQAKSKAEVLAVINHY
>NZ_CP029133.1|WP_049211268.1|809487_810534_-|LacI-family-transcriptional-regulator
MIKTRKRRNTGRVTLQEVAKHAGVGSMTVSRALRTPELVSDKLREKVNQAVAELGYIPNASAGALASAQSHIIAVLLPSFTDKASADFMQSLQQILSRHHYQILVGCYEYQLHKATDVINMLLQSNPAALVAFGSQLSDVQFLHISNANVPVVSVASQSNEQSAISIDCSYEKAAFDLTHYLIQQGKRCVGYVGALQGQRLHHQQITGWSRALLKNYLNAEQSVTTPDPASMAYGRQALTEILLRQPELDAVICSHESIALGMMFECQRRLIKIPQDLAIACLEGSENSAQIAPSLTSIHFNYHKIGKEAGKHLIALLQHLRDEVDNAMFENTVINYAYRLELGQSTP
>NZ_CP029133.1|WP_004243726.1|808948_809491_+|NUDIX-hydrolase-YfcD
MEQENTAVVEWVDIVDEKNEVVAQATRQQMRAENLRHRATYIVVHDGMGKILAQRRTETKDFYPGWLDATAGGVVQQGENALESARREAEEELGIAGVPFAEHGQFYYDDESCRVWGSLFSCVSHGPFALQPEEIEEVCWLTPLEITERCDEFTPDSLKALSLWLTRNNSTRLDTKETTD
>NZ_CP029133.1|WP_004250689.1|808137_808752_-|thiol:disulfide-oxidoreductase
MIDLYYANTPNGQKITLFLEEVAMPYTLHHVDIGKGDQFKPEFLAISPNNKIPAIVDNAPADGGEPLSIFESGAILIYLAEKSGKLLSHDLREKMTQLQWLFWQVGGFGPMLGQNHHFTRYAPEKVPYAINRYTKETERLYQVLESRLAQSPYLGGNDYSIADIATYTWARYHDTHHIDLADYPAVEKWLNTISQRPAAKKLFG
>NZ_CP029133.1|WP_108716887.1|807167_808073_-|TIGR01777-family-protein
MNILITGGTGLIGRALICQLALDKHNITVLSRSPQKVYSHFCNEMACWTHLDDKENLNQFDAVINLAGEPIADKRWTPEQKQTLVNSRCKLTQKLVDLIKASDSPPSVLISGSAVGFYGDQGKNNVTEETPPKDEFTHQLCAKWENIALDAQTPLTRVCLLRTGIVLSTKGGALPKMSPPFKLGLGGKLGNGKQYMPWIHIDDMVNAIVFLLNNNNTQGAFNLTAPHPVQNKAFTTTLAHVLKRPAFMTVPATILKLMMGESATLVLGGQQAFPKKLLDAGFSFRYPQLEGALEDIIRHKK
>NZ_CP029133.1|WP_004243729.1|806566_807148_+|UbiX-family-flavin-prenyltransferase
MKKLIVGLTGASGAIYGIRLLEILKSVPTVETHLVISQAARRTISLETDYSLKDIHALADIIYDDRDIGATISSGSFRVNGMVILPCSIKSLSGIVHSYTDTLVTRAADVVLKEGRKLVLCVRETPLHLGHLRLMTQAAELGAIIMPPVPAFYFQPKTIDDIVNQTVNRVLDQFDIDLPDDLFQRWQGDKPAR
>NZ_CP029133.1|WP_004243730.1|804927_806445_+|amidophosphoribosyltransferase
MCGIVGIAGVNPVNQSIYDALTVLQHRGQDAAGIATIDENNGFRLRKANGLVKDVFETRHMLRLKGTIGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNAHLLRRQLFETARRHINTTSDSEILLNVLAYELDRFDHFPLEPDNIFTAVAAMHKKLRGAYACVALIIGHGLLAFRDPYGIRPLVLGKRTLEDGRSEYMVASESVALDTLGFEFLRDVAPGEAVYITEQGQLFTRQCAENPQLVPCLFEYVYFARPDSFIDKISVYNARLRMGQKLGAKIAKEWEDLQIDVVIPIPETSCDIALEIAHILNKPYRQGFVKNRYVGRTFIMPGQQERRKSVRRKLNANRAEFRDKNVLLIDDSIVRGTTSEQIVELAREAGAKKVYFASAAPEVRFPNVYGIDMPNANELIAHGREVDEIRKLIGADGLIFQDLSDLIAAVQEENPDINQFECSVFDGVYITKDIDQGYLDYLENLRRDDEHKIRDQHEAENLEIYNEG
>NZ_CP029133.1|WP_004243731.1|804405_804897_+|colicin-V-production-protein
MVWIDYAIIAIIGFSALVSLIRGFVREALSLITWGCGFFVASQFYPYLAVYFTRFEDELVRNGIAIVTLFIATLIVGAVINYVISSLVQRTGLSGTDRVLGICFGALRGVLIVSALLFVLGAFTPMADSADWQRSELIPQFNHIIRWFFDYLQNASSFVSEKM
>NZ_CP029133.1|WP_108716888.1|816064_817663_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNIINQPWLPFRFRDGEIKTLPISAISHPDIIDFSLNRADFKGAAYQFAIGLLQTIFAPEDEDEWEEYFETPPSSKKLQSAFDKVAHAFNIMGDGPLFMQDFSTLEEQKNIPIAQLLIDAPGENGIKQNTDHFIKQGIADVMSLEMAVLALFTLQINAPSGGKGHLVSLRGGGPLTTLVYPAEENSTLWQKLWLNVINREFWEYDEPNFDDGSVFPWLIPLNLKEGKGEKVSPDDVHPLYMYWAMPRRIRLKVENKSVTCQISDMKSNFSVRYYVTKNYGLDYQEGWLHPLTPYYWDPKKPEMFPNSIKGRQGGIHYNLWDRLFLSSNENGQKSATVVSHYLKLYQLLEFTRKHRLLIFGYDMDNMKPRGWYNLEMPIFHVKDEYNNKIINEIKIIQKLTIDCLRSVKEQVKKAWFSSPKDMKGDISFIDLTFWQRSENIFFEVVQNIIVQIQKNDFLTHEQAKKWLNSIRKISISIFDEYALSALGTQKSVSGCIKARNGLIKDLYSNKRIKKFTEDFKITKENGEQYGIL
>NZ_CP029133.1|WP_049200714.1|817649_818237_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MGSYKSKNITLYNYPELKINVLRWWESLFLSPNELSKKGILPAPNRYKSELKRCDSITAIMLTEGFRALWLSFPVDLINNATTEDIERWATIVAILVYITQDSEKHFATIAGEKDESKKSCISESRFLQLQSSRTYDEFIRRLRRILIQIKGKSSVLSMCKDIEKWVLEKQRFSSIQTNKQIIIEWAMKYYQAAI
>NZ_CP029133.1|WP_036918645.1|818267_819302_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSQFIQLHILTSYAPSNLNRDDLGRPKTAIMGGFERLRISSQSLKRHWRTSELFNIALSGNIGIRTKKFGLQLYDALIEGGVSEKNAKNWVELIIEQYGKIKKDSIETEQLVHISHLEKSLAFDLINLLIKEQREPTKQELESLKTINTSVDIALFGRMLASAPKYNIEAACQVAHAISVHSTVIEDDYFTAVDDLNNGETDTGSAHIGEAGFAAALFYSYICINKTQLIESLDGNEELANKAIQALTEVAIKVSPTGKQNSFASRAYASYVLAEKGSYQPRSLSVAFLKPIDDEDMENAAINALKFRMENFDKVYGTCAESRYQLNAVQGEGSLSGLLQFVAE
>NZ_CP029133.1|WP_017627990.1|819314_820052_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MAQYLVFRLYGPLASWGLPAVGGDRQTGIAPSRSAILGLLSASLGINRKDESKLLQLQQSVLVATKQLVPSMLLRDFHTAQVPSKRKNITHPTRRSELAEKDQNTILSSRDYRCDAIWIIAIKLTGHSQYTLEQLKNALLKPVYILSLGRKSCPLSLPMMPKIVEVEQLKEALDTQFPYITTSDKADSYWFHSDGWVTYFWEGNYQDIKGENIMTLYPWDDPINRQHWQFRQRKMYQMSVKRESE
>NZ_CP029133.1|WP_036918640.1|820051_820729_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRISIDYSADYLHSLLANKLPDGYTIHQLLWRLFTEEKERSFLYRLEIGKNGKPIFYILSSIAPTTKNNFFKIETKPFLPKLVKKMKLAFSLRANPTVCITDKEGKRHRHDVLMHAKKQAQLDGKDYSHDDIHHLMQQAALNWISSDDRLNKWGISLTQLPDIKAYTPERIKKPSGKIMSFSSVDYQGVLTIEEPHLFWQQYQQGFGRAKAFGCGLMLIRNI
>NZ_CP029133.1|WP_108716889.1|820729_821650_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAFIPLRPIPIKDRHSMIFIGMGRIDVKDGAFVVIDEINGERMLIPVGSLACILLEPGTHISHAAVKLAATVGTLLIWVGEAGVRLYSVGQPGGARSDKLLYQAKLALDNDLRLKVVRKMFELRFGESAPLKRSVDQLRGIEGARVRKQYQMLAKKFKIDWKGRRYDPKDWEAGDIINRCISAATACLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPVAFKVASYKAIAPDREVRIACREAFRKYQTLNKLIPLIEEVLSAGEITPPEPPIDAQSPAIPQAHPFGDEGHREK
>NZ_CP029133.1|WP_017627993.1|821652_821949_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMIVVVTEAVPPRLRGRLAVWLLEVRAGVYVGNVSARIREMIWQQINEFAEDGNVVMAWGTNTESGFDFQTYGENRREPIDFDGLRLVLFKPYKEDV
>NZ_CP029133.1|WP_017627994.1|822509_823733_+|alanine-racemase
MSLAIRYLALLPLFVITACQQPVNYNPPATQVAQAQPAIVNNSWIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIHLALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDANKVREDLARFKQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIASTDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSNAGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISGALFTEMSILWGATNQRVLVD
>NZ_CP029133.1|WP_108716890.1|823810_826210_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MKISHFYRWIVFIILTILALYFTVLGGYLVSLAGSPFYLFTGVMLLIIAACFLSRKKSTLLLFNFLFLITIVWSIWESGFDFWALAPRLDIIFILGLLLIPFTLNNNVYTCRTNKIGLFTLLATTLIIILGSSLTDPHAINGQFTQQQPTNSISPIGVNDNDWPAYGRTQAGIRYSPLTQINSDNVDKLVEKWTFHTGDEKRANDAVEITNEVTPIKIEDNLFLCTPHQYLISLDPATGKEKWRFDSKLQYNKSFQHMTCRGVAYYNQNNSAEFAKSLDVRQPSISDECPEKVFLPVNDGRLIAVNAQTGNACRDFGQNGEINLLASMPYAYLGGYNPTSPPIVTGNTIIIGGSVTDNLSTQEPSGVIRGYDVNSGKLIWVFDTGAEDPNAMPGKETQFVHNSPNAWAPLAYDAQTDVVYIPTGVGTPDIWGGDRHPLKERYANSVLALEGSTGELLWHFQTTHHDLWDMDVPSQPSLVDIKTDKNETIPAIYIVTKTGNVFVLDRRDGTPIVPVTEKPVPTSVKYGPQTQGEHYSPTQPFSALNLAPKNKLQGSDMWGGTMADQLLCRIAFHQLNYEGIYTPPSENGTLVFPGNLGIFEWGGISVNQDRQVAVMNFITLPFISKLYLKDPQDSQAIDAGHGEQGLQPMTGTPYSVDIHPFLSPLGLPCKQPPWGLVAGVDLTKNELVWQQRFGTIRDSLPNLVELPPLKIGVPGLGGAISTAGNVMFVAASQDNYIRAFNVTNGKMLWEAQLPAGGQATPMTYSIGGKQYVVIMAGGHGSFGTKMGDSLVAYGLPDNL
>NZ_CP029133.1|WP_108716891.1|826447_826591_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MTKLALIGLITVCIIVLCFTLLRHERLCSFNISSGNTLVQANLSCDK

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Crispr_ID: NZ_CP029133_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029133_3

822008-822341

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGTGTATACGGGGATGAACCG	PILER-CR
GTGTTCCCCGTGTATACGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGTGTATACGGGGATGAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP029133_3

>merge|NZ_CP029133|3|822008-822341|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGTGTATACGGGGATGAACCGAATATAGAAGAGCAAGAAAAAATAGTTAAAAAGTGTTCCCCGTGTATACGGGGATGAACCGGCCATTAGTGGCATTTCAGATAATGAACTCCCGTGTTCCCCGTGTATACGGGGATGAACCGCCGTAAGTGACCAAAGTAACGTAGTGATACGTGTGTTCCCCGTGTATACGGGGATGAACCGGACCTCTTAACGCTACTTGGCCTTAATCATGAGTGTTCCCCGTGTATACGGGGATGAACCGTGACTTTAATTCCGTTTTCTTTTGCTTCATTAGTGTTCCCCGTGTATACGGGGATAAATTA

>NZ_CP029133|3|2|822008-822280|PILER-CR
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG

>NZ_CP029133|3|3|822008-822341|CRISPRCasFinder
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG	TGACTTTAATTCCGTTTTCTTTTGCTTCATTA
GTGTTCCCCGTGTATACGGGGATAAATTA

>NZ_CP029133|3|2|822008-822341|CRT
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG	TGACTTTAATTCCGTTTTCTTTTGCTTCATTA
GTGTTCCCCGTGTATACGGGGATAAATTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029133.1\|WP_108716888.1\|816064_817663_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP029133.1\|WP_017627990.1\|819314_820052_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP029133.1\|WP_071233525.1\|832948_833611_+\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|183215
NZ_CP029133.1\|WP_108716891.1\|826447_826591_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP029133.1\|WP_004243721.1\|811531_812788_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP029133.1\|WP_017627985.1\|810760_811204_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP029133.1\|WP_049200714.1\|817649_818237_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP029133.1\|WP_004248391.1\|828007_830152_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP029133.1\|WP_004247166.1\|827527_827671_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP029133.1\|WP_004243716.1\|830229_831432_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP029133.1\|WP_004247166.1\|826987_827131_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP029133.1\|WP_004243712.1\|831823_832279_+\|DUF412-domain-containing-protein	unknown	unknown	gnl\|CDD\|179338
NZ_CP029133.1\|WP_017627994.1\|822509_823733_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|183984
NZ_CP029133.1\|WP_012368108.1\|811233_811521_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP029133.1\|WP_036918640.1\|820051_820729_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NZ_CP029133.1\|WP_108716889.1\|820729_821650_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP029133.1\|WP_108716890.1\|823810_826210_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
NZ_CP029133.1\|WP_023843594.1\|832419_832914_+\|YfbU-family-protein	unknown	unknown	gnl\|CDD\|180087
NZ_CP029133.1\|WP_036918645.1\|818267_819302_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP029133.1\|WP_017627993.1\|821652_821949_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
NZ_CP029133.1\|WP_108716888.1\|816064_817663_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.08313e-138
NZ_CP029133.1\|WP_017627990.1\|819314_820052_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.81256e-48
NZ_CP029133.1\|WP_071233525.1\|832948_833611_+\|sugar-phosphatase	gnl\|CDD\|183215	PRK11587, PRK11587, putative phosphatase; Provisional.	1.05353e-141
NZ_CP029133.1\|WP_108716891.1\|826447_826591_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	9.25992e-08
NZ_CP029133.1\|WP_004243721.1\|811531_812788_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP029133.1\|WP_017627985.1\|810760_811204_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.97304e-43
NZ_CP029133.1\|WP_049200714.1\|817649_818237_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.73826e-22
NZ_CP029133.1\|WP_004248391.1\|828007_830152_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP029133.1\|WP_004247166.1\|827527_827671_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	5.93268e-09
NZ_CP029133.1\|WP_004243716.1\|830229_831432_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP029133.1\|WP_004247166.1\|826987_827131_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	5.93268e-09
NZ_CP029133.1\|WP_004243712.1\|831823_832279_+\|DUF412-domain-containing-protein	gnl\|CDD\|179338	PRK01816, PRK01816, hypothetical protein; Provisional.	7.72253e-90
NZ_CP029133.1\|WP_017627994.1\|822509_823733_+\|alanine-racemase	gnl\|CDD\|183984	PRK13340, PRK13340, alanine racemase; Reviewed.	0
NZ_CP029133.1\|WP_012368108.1\|811233_811521_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.22877e-30
NZ_CP029133.1\|WP_036918640.1\|820051_820729_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.31526e-57
NZ_CP029133.1\|WP_108716889.1\|820729_821650_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.15637e-143
NZ_CP029133.1\|WP_108716890.1\|823810_826210_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP029133.1\|WP_023843594.1\|832419_832914_+\|YfbU-family-protein	gnl\|CDD\|180087	PRK05445, PRK05445, YfbU family protein.	1.95663e-106
NZ_CP029133.1\|WP_036918645.1\|818267_819302_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8909e-120
NZ_CP029133.1\|WP_017627993.1\|821652_821949_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.37501e-60

>NZ_CP029133.1|WP_017627993.1|821652_821949_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMIVVVTEAVPPRLRGRLAVWLLEVRAGVYVGNVSARIREMIWQQINEFAEDGNVVMAWGTNTESGFDFQTYGENRREPIDFDGLRLVLFKPYKEDV
>NZ_CP029133.1|WP_108716889.1|820729_821650_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAFIPLRPIPIKDRHSMIFIGMGRIDVKDGAFVVIDEINGERMLIPVGSLACILLEPGTHISHAAVKLAATVGTLLIWVGEAGVRLYSVGQPGGARSDKLLYQAKLALDNDLRLKVVRKMFELRFGESAPLKRSVDQLRGIEGARVRKQYQMLAKKFKIDWKGRRYDPKDWEAGDIINRCISAATACLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPVAFKVASYKAIAPDREVRIACREAFRKYQTLNKLIPLIEEVLSAGEITPPEPPIDAQSPAIPQAHPFGDEGHREK
>NZ_CP029133.1|WP_036918640.1|820051_820729_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRISIDYSADYLHSLLANKLPDGYTIHQLLWRLFTEEKERSFLYRLEIGKNGKPIFYILSSIAPTTKNNFFKIETKPFLPKLVKKMKLAFSLRANPTVCITDKEGKRHRHDVLMHAKKQAQLDGKDYSHDDIHHLMQQAALNWISSDDRLNKWGISLTQLPDIKAYTPERIKKPSGKIMSFSSVDYQGVLTIEEPHLFWQQYQQGFGRAKAFGCGLMLIRNI
>NZ_CP029133.1|WP_017627990.1|819314_820052_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MAQYLVFRLYGPLASWGLPAVGGDRQTGIAPSRSAILGLLSASLGINRKDESKLLQLQQSVLVATKQLVPSMLLRDFHTAQVPSKRKNITHPTRRSELAEKDQNTILSSRDYRCDAIWIIAIKLTGHSQYTLEQLKNALLKPVYILSLGRKSCPLSLPMMPKIVEVEQLKEALDTQFPYITTSDKADSYWFHSDGWVTYFWEGNYQDIKGENIMTLYPWDDPINRQHWQFRQRKMYQMSVKRESE
>NZ_CP029133.1|WP_036918645.1|818267_819302_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSQFIQLHILTSYAPSNLNRDDLGRPKTAIMGGFERLRISSQSLKRHWRTSELFNIALSGNIGIRTKKFGLQLYDALIEGGVSEKNAKNWVELIIEQYGKIKKDSIETEQLVHISHLEKSLAFDLINLLIKEQREPTKQELESLKTINTSVDIALFGRMLASAPKYNIEAACQVAHAISVHSTVIEDDYFTAVDDLNNGETDTGSAHIGEAGFAAALFYSYICINKTQLIESLDGNEELANKAIQALTEVAIKVSPTGKQNSFASRAYASYVLAEKGSYQPRSLSVAFLKPIDDEDMENAAINALKFRMENFDKVYGTCAESRYQLNAVQGEGSLSGLLQFVAE
>NZ_CP029133.1|WP_049200714.1|817649_818237_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MGSYKSKNITLYNYPELKINVLRWWESLFLSPNELSKKGILPAPNRYKSELKRCDSITAIMLTEGFRALWLSFPVDLINNATTEDIERWATIVAILVYITQDSEKHFATIAGEKDESKKSCISESRFLQLQSSRTYDEFIRRLRRILIQIKGKSSVLSMCKDIEKWVLEKQRFSSIQTNKQIIIEWAMKYYQAAI
>NZ_CP029133.1|WP_108716888.1|816064_817663_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNIINQPWLPFRFRDGEIKTLPISAISHPDIIDFSLNRADFKGAAYQFAIGLLQTIFAPEDEDEWEEYFETPPSSKKLQSAFDKVAHAFNIMGDGPLFMQDFSTLEEQKNIPIAQLLIDAPGENGIKQNTDHFIKQGIADVMSLEMAVLALFTLQINAPSGGKGHLVSLRGGGPLTTLVYPAEENSTLWQKLWLNVINREFWEYDEPNFDDGSVFPWLIPLNLKEGKGEKVSPDDVHPLYMYWAMPRRIRLKVENKSVTCQISDMKSNFSVRYYVTKNYGLDYQEGWLHPLTPYYWDPKKPEMFPNSIKGRQGGIHYNLWDRLFLSSNENGQKSATVVSHYLKLYQLLEFTRKHRLLIFGYDMDNMKPRGWYNLEMPIFHVKDEYNNKIINEIKIIQKLTIDCLRSVKEQVKKAWFSSPKDMKGDISFIDLTFWQRSENIFFEVVQNIIVQIQKNDFLTHEQAKKWLNSIRKISISIFDEYALSALGTQKSVSGCIKARNGLIKDLYSNKRIKKFTEDFKITKENGEQYGIL
>NZ_CP029133.1|WP_004243721.1|811531_812788_+|PTS-ascorbate-transporter-subunit-IIC
MDFFRFLMSDVLSEPAILVGLIALIGLIAQKKPATECIKGTVKTIMGFVILGAGAGLVINSLGDFSTIFQHAFGIQGVVPNNEAIVSIAQKSFGKEMALIMFFAMLINILIARLTPWKYIFLTGHHTLFMSMMVAVILATAGLEGAVLVAVGSLVVGVSMVFFPAIAHPYMKKITGSDDVALGHFSTISYVVSGFIGSKFGNKAHSTEEMNVPKSLLFLRDTPVAIAFTMGIIFIITCLFAGDTFVREVSGGKNWFMFSLMQSITFAAGVYIILQGVRMVIAEIVPAFKGISDKLVPNAKPALDCPVVFPYAPNAVLVGFLSSFAAGVIGMFILYALDWTVIIPGVVPHFFVGATAGVFGNATGGRRGAILGAFAQGLLITFLPVFLLPVLGDIGIANTTFSDADFGVIGILLGIIVR
>NZ_CP029133.1|WP_012368108.1|811233_811521_+|PTS-sugar-transporter-subunit-IIB
MKITVVCGNGLGSSLMMEMSIKSILKDLAVNADVDHVDLGSAKGTPSDIYVGTRDIAEQLNAQAVNGKIVSLDNMIDKVAMKEKLSTALRELGAL
>NZ_CP029133.1|WP_017627985.1|810760_811204_+|PTS-sugar-transporter-subunit-IIA
MLKTLLTPDVVQVIPQVKDWREAIKIACQPLIDKGCIEPRYVDAIYKSHEQIGPYYVLGPGIAMPHARPEEGVNQLSLALTIIEKGVEFGANENDPVKLLIVLAATDNDSHINAIVKLAELFDNQDDIDTLLQAKSKAEVLAVINHY
>NZ_CP029133.1|WP_017627994.1|822509_823733_+|alanine-racemase
MSLAIRYLALLPLFVITACQQPVNYNPPATQVAQAQPAIVNNSWIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIHLALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDANKVREDLARFKQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIASTDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSNAGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISGALFTEMSILWGATNQRVLVD
>NZ_CP029133.1|WP_108716890.1|823810_826210_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MKISHFYRWIVFIILTILALYFTVLGGYLVSLAGSPFYLFTGVMLLIIAACFLSRKKSTLLLFNFLFLITIVWSIWESGFDFWALAPRLDIIFILGLLLIPFTLNNNVYTCRTNKIGLFTLLATTLIIILGSSLTDPHAINGQFTQQQPTNSISPIGVNDNDWPAYGRTQAGIRYSPLTQINSDNVDKLVEKWTFHTGDEKRANDAVEITNEVTPIKIEDNLFLCTPHQYLISLDPATGKEKWRFDSKLQYNKSFQHMTCRGVAYYNQNNSAEFAKSLDVRQPSISDECPEKVFLPVNDGRLIAVNAQTGNACRDFGQNGEINLLASMPYAYLGGYNPTSPPIVTGNTIIIGGSVTDNLSTQEPSGVIRGYDVNSGKLIWVFDTGAEDPNAMPGKETQFVHNSPNAWAPLAYDAQTDVVYIPTGVGTPDIWGGDRHPLKERYANSVLALEGSTGELLWHFQTTHHDLWDMDVPSQPSLVDIKTDKNETIPAIYIVTKTGNVFVLDRRDGTPIVPVTEKPVPTSVKYGPQTQGEHYSPTQPFSALNLAPKNKLQGSDMWGGTMADQLLCRIAFHQLNYEGIYTPPSENGTLVFPGNLGIFEWGGISVNQDRQVAVMNFITLPFISKLYLKDPQDSQAIDAGHGEQGLQPMTGTPYSVDIHPFLSPLGLPCKQPPWGLVAGVDLTKNELVWQQRFGTIRDSLPNLVELPPLKIGVPGLGGAISTAGNVMFVAASQDNYIRAFNVTNGKMLWEAQLPAGGQATPMTYSIGGKQYVVIMAGGHGSFGTKMGDSLVAYGLPDNL
>NZ_CP029133.1|WP_108716891.1|826447_826591_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MTKLALIGLITVCIIVLCFTLLRHERLCSFNISSGNTLVQANLSCDK
>NZ_CP029133.1|WP_004247166.1|826987_827131_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MTKLALIGLITVCITVLCFTLLRHERLCSFNISSGNTLVQANLSCDK
>NZ_CP029133.1|WP_004247166.1|827527_827671_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MTKLALIGLITVCITVLCFTLLRHERLCSFNISSGNTLVQANLSCDK
>NZ_CP029133.1|WP_004248391.1|828007_830152_-|phosphate-acetyltransferase
MSRTIMLVPTDTRVGLTSVSLGVIRSMEQKGVRLSVFKPIAQPRVKGALDQTTAIIRSHSTIQSAEPLNMDYVESLLSSNKKDVLMEEIVARYHENTADAEVVLIEGLVPMRKHPFAQSLNYEIAKTLGAEIVFVTALGNNTAEQLKERIEFARAEFGGVKNQNITGVIVNKLNAPVDDQGRTRPDLSEIFDDSSKAIISNVDLNTIEKNSPLPLLGCIPWNFDLIATRATDMAKHLNATIINKGDIETRRIKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVSACLAAMNGVEIGAILLTGGYQIDAPIKQLCERAFETGLPIFMVNSNTWQTSLNLQSFSLEVPADDHERIEKIQNYVAQHINNQWIDSLTANSERPNRLSPPAFRYQLTELARKAKKRIVLPEGDEPRTVKAASICAERGIATCVLLGDPEEIRRVAAAQGVELGTGIELINPKEVREIYVPRLVELRKNKGMTEVVAREQLEDNVVLGTLMLEKGVVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAKAFGIDPRVAMISYSTGNSGAGSDVEKVREATRLAQEKRPDLIIDGPLQYDAAVMADVAKSKAPNSPVAGKATVFIFPDLNTGNTTYKAVQRSADLVSIGPMLQGMRKPVNDLSRGALVDDIVYTVALTAIQASQQENA
>NZ_CP029133.1|WP_004243716.1|830229_831432_-|acetate-kinase
MSSKLVLVLNCGSSSLKFAIINPENGEEFLSGLAECFNLPEARLKWKMDGQKHEAALGAGAAHSEALNFIVNTILAEKPELSQQIAAIGHRIVHGGEKFTKSVVITDEVIKGIEAAIPFAPLHNPAHLIGIEEARKAFPHLINKMVAVFDTAFHQTMPEEAYLYALPYSLYKDHSIRRYGAHGTSHFFVSREAAKMLNKPVDELNVITCHLGNGGSVSAIVNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIVFHLHDTLGMSVEDINKLLTKESGLLGLTEVTSDCRYVEDNYETKADAKRAMDVYCHRLAKYIGSYCALMEGRLDAIIFTGGIGENAAMVRELSLKKLALLGFEVDHQRNLDARFGKSGTITTDNSRLAVVIPTNEELVIAQDASRLTA
>NZ_CP029133.1|WP_004243712.1|831823_832279_+|DUF412-domain-containing-protein
MNEPTVTPPGFFKKLRLGNEYLKTWPVEKQLAPVFPENRMIKATRFGIRYMPPIAIFTLTWQIALGGDLGPAITTALFACSLPMQGLWWLGKRAATPLPAVLLNWFYEIREKFEQAGIALAPVEKTPTYLSLAHLLKRAFKQLDRSFLDDV
>NZ_CP029133.1|WP_023843594.1|832419_832914_+|YfbU-family-protein
MEMTHAQRLILSNQYKMMTMMDPDNAERYRRYQTIIERGYGLQLRELDRDFDEMSEETCRTIINIMEMYHALQVSRENLKSPEMPDARRVAFMGFDAATESRYLSYVRFMVNTEGRYTHFDSGSHGFNSQTPMWEKYQRMLAVWLACPRQYHLSSVEIQQILNA
>NZ_CP029133.1|WP_071233525.1|832948_833611_+|sugar-phosphatase
MTITCKGFLFDLDGTLVDSLPVVEYCWALFGERVGVSTQEINNYIHGKPAIESIRHFMPNATQAQIEETFRWLEKLEATQTEGLAPLPGAIELINRLNDLAIPWAIVTSGTVPIASTRQSVTGIPEPKHWVTAECITQGKPNPEPYLLGAKKLGLAPEECVVFEDAAAGIYAGLDAGCQVIAVHAPISLPRRNEIDLIIDSLNDLQIDKENQQVVIKHKC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP029133_2	2.1\|812948\|31\|NZ_CP029133\|CRT	812948-812978	31	NZ_CP029133.1	3406119-3406149	1.0
NZ_CP029133_2	2.4\|812949\|31\|NZ_CP029133\|PILER-CR	812949-812979	31	NZ_CP029133.1	3406119-3406149	1.0
NZ_CP029133_2	2.6\|812947\|33\|NZ_CP029133\|CRISPRCasFinder	812947-812979	33	NZ_CP029133.1	3406118-3406150	1.0

1. spacer 2.1|812948|31|NZ_CP029133|CRT matches to position: 3406119-3406149, mismatch: 0, identity: 1.0

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
cttcaacgctcttttcgcgcagctcttttgc	Protospacer
*******************************

2. spacer 2.4|812949|31|NZ_CP029133|PILER-CR matches to position: 3406119-3406149, mismatch: 0, identity: 1.0

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
cttcaacgctcttttcgcgcagctcttttgc	Protospacer
*******************************

3. spacer 2.6|812947|33|NZ_CP029133|CRISPRCasFinder matches to position: 3406118-3406150, mismatch: 0, identity: 1.0

tcttcaacgctcttttcgcgcagctcttttgct	CRISPR spacer
tcttcaacgctcttttcgcgcagctcttttgct	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP047287	Proteus cibarius strain G11 plasmid p52, complete sequence	15649-15680	2	0.938
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP053373	Proteus cibarius strain G32 plasmid pG32-51, complete sequence	11938-11969	2	0.938
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP047341	Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence	21213-21244	2	0.938
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP045009	Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence	38543-38574	2	0.938
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024317	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence	64738-64769	6	0.812
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024391	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence	8781-8812	6	0.812
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024206	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence	64744-64775	6	0.812
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024334	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence	8793-8824	6	0.812
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024352	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence	64754-64785	6	0.812
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024372	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence	64732-64763	6	0.812
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_CP032411	Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence	68697-68728	7	0.781
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP021873	Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence	64299-64330	7	0.781
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	241259-241290	7	0.781
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	313-344	7	0.781
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	255930-255961	8	0.75
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_011775	Bacillus cereus G9842 plasmid pG9842_209, complete sequence	150360-150391	8	0.75
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_017472	Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence	20775-20806	8	0.75
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_017398	Borreliella burgdorferi N40 plasmid N40_cp32-5, complete sequence	3757-3788	8	0.75
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	85349-85380	8	0.75
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP046625	Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence	19764-19795	8	0.75
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN695335	Synechococcus phage B23, complete genome	59407-59438	8	0.75
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN695334	Synechococcus phage B3, complete genome	59404-59435	8	0.75
NZ_CP029133_2	2.1\|812948\|31\|NZ_CP029133\|CRT	812948-812978	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	326676-326706	9	0.71
NZ_CP029133_2	2.2\|813009\|31\|NZ_CP029133\|CRT	813009-813039	31	NC_021772	Salmonella phage FSL SP-058, complete genome	11010-11040	9	0.71
NZ_CP029133_2	2.2\|813009\|31\|NZ_CP029133\|CRT	813009-813039	31	NC_021782	Salmonella phage FSL SP-076, complete genome	6595-6625	9	0.71
NZ_CP029133_2	2.4\|812949\|31\|NZ_CP029133\|PILER-CR	812949-812979	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	326676-326706	9	0.71
NZ_CP029133_2	2.5\|813010\|31\|NZ_CP029133\|PILER-CR	813010-813040	31	NC_021772	Salmonella phage FSL SP-058, complete genome	11010-11040	9	0.71
NZ_CP029133_2	2.5\|813010\|31\|NZ_CP029133\|PILER-CR	813010-813040	31	NC_021782	Salmonella phage FSL SP-076, complete genome	6595-6625	9	0.71
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_012859	Vibrio parahaemolyticus strain A5-5 plasmid pZY5, complete sequence	296-327	9	0.719
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_028997	Enterobacteria phage JenP2, complete genome	57998-58029	9	0.719
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_014660	Acinetobacter phage Ac42, complete genome	164709-164740	9	0.719
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MK554696	Fusobacterium phage Fnu1, complete genome	3398-3429	9	0.719
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN013077	Klebsiella phage vB_KaeM_KaOmega, complete genome	88020-88051	9	0.719
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_019360	Citrobacter freundii plasmid pNDM-CIT, complete sequence	132672-132703	10	0.688
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	KY320277	Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence	245911-245942	10	0.688
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	125509-125540	10	0.688
NZ_CP029133_3	3.1\|822037\|32\|NZ_CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_MF788071	Raoultella ornithinolytica strain 23141 plasmid p23141-3, complete sequence	226490-226521	10	0.688
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	JQ691611	Cronobacter phage CR9, complete genome	91093-91124	10	0.688
NZ_CP029133_3	3.5\|822281\|32\|NZ_CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_028838	Clostridium phage phiCD506, complete genome	18539-18570	10	0.688

1. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP047287 (Proteus cibarius strain G11 plasmid p52, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

2. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP053373 (Proteus cibarius strain G32 plasmid pG32-51, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

3. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP047341 (Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

4. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP045009 (Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

5. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024317 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

6. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024391 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

7. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024206 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

8. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024334 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

9. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024352 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

10. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP024372 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

11. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032411 (Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence) position: , mismatch: 7, identity: 0.781

aatat-agaagagcaagaaaaaatagttaaaaa	CRISPR spacer
-gtatctgtagagcaagaaagaataggtaaaag	Protospacer
 .***  * ***********.***** *****.

12. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP021873 (Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
ggggtacaattcctttttcttttgcttcaata	Protospacer
 *. * .****** *************** **

13. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgctt-catta	CRISPR spacer
tctatttaattcatttttcttttgcttgtatt-	Protospacer
*   ********  ************* .***

14. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgctt-catta	CRISPR spacer
tctatttaattcatttttcttttgcttgtatt-	Protospacer
*   ********  ************* .***

15. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gatatagaagagcaataaaaaataaagagtga	Protospacer
.************** ********.  *. .*

16. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gatatagaagagcaataaaaaataaagagtga	Protospacer
.************** ********.  *. .*

17. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_017472 (Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
aataaaaaagagcaagaaaaaataagggaatt	Protospacer
**** *.*****************.  .**

18. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NC_017398 (Borreliella burgdorferi N40 plasmid N40_cp32-5, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
ttactttaatactgttttcttttgcaactaaa	Protospacer
* ******** *.************  *   *

19. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
gcacatcgattccatcttcttttgcttcattg	Protospacer
  ** *..*****.*.***************.

20. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NZ_CP046625 (Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
gtattgtaaatcagttttcttttgcttcaaca	Protospacer
  *.* *** ** **************** .*

21. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tccggtgatttccgctttcttttggttcatta	Protospacer
*    * * *****.********* *******

22. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tccggtgatttccgctttcttttggttcatta	Protospacer
*    * * *****.********* *******

23. spacer 2.1|812948|31|NZ_CP029133|CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
tctccacgcccttttcgcgcagctccggatc	Protospacer
..** ****.***************.    *

24. spacer 2.2|813009|31|NZ_CP029133|CRT matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

25. spacer 2.2|813009|31|NZ_CP029133|CRT matches to NC_021782 (Salmonella phage FSL SP-076, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

26. spacer 2.4|812949|31|NZ_CP029133|PILER-CR matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
tctccacgcccttttcgcgcagctccggatc	Protospacer
..** ****.***************.    *

27. spacer 2.5|813010|31|NZ_CP029133|PILER-CR matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

28. spacer 2.5|813010|31|NZ_CP029133|PILER-CR matches to NC_021782 (Salmonella phage FSL SP-076, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

29. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_012859 (Vibrio parahaemolyticus strain A5-5 plasmid pZY5, complete sequence) position: , mismatch: 9, identity: 0.719

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
tgaagagatgagcaagaaaaaatagttatccc	Protospacer
 . * *** *******************

30. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_028997 (Enterobacteria phage JenP2, complete genome) position: , mismatch: 9, identity: 0.719

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
aatattgaagagcaagaagaaatgctatagcg	Protospacer
***** ************.****. *  *. .

31. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NC_014660 (Acinetobacter phage Ac42, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
cagtgtaaattgcgtattcttttgcttcattg	Protospacer
.... * **** *** ***************.

32. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tctctttaatttctttttcttttgctaatatc	Protospacer
*  ********.* ************    *

33. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to MN013077 (Klebsiella phage vB_KaeM_KaOmega, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
atcgtgttattacgttttcttttgcttcgttg	Protospacer
    * * *** ****************.**.

34. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_019360 (Citrobacter freundii plasmid pNDM-CIT, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
taacccaaagagcaaaaaaaaatagataaatt	Protospacer
 *  . .********.********* ****

35. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to KY320277 (Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
taacccaaagagcaaaaaaaaatagataaatt	Protospacer
 *  . .********.********* ****

36. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
ataatagaagaacaaaaaaaaatagtatctgt	Protospacer
*  ********.***.**********    .

37. spacer 3.1|822037|32|NZ_CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF788071 (Raoultella ornithinolytica strain 23141 plasmid p23141-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gcggaggacgagcaagaaaaaatagtgaagga	Protospacer
.  . .** ***************** **..*

38. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to JQ691611 (Cronobacter phage CR9, complete genome) position: , mismatch: 10, identity: 0.688

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
atcgtgctattacgttttcttttgcttcgttg	Protospacer
    * . *** ****************.**.

39. spacer 3.5|822281|32|NZ_CP029133|CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 10, identity: 0.688

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
cagttaaaattctgttttcttttccttcatct	Protospacer
....*  *****.********** ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82346 : 91190

Caulobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017827550.1\|82346_83492_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	1.2e-31	27.2
WP_004245609.1\|83884_84469_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	4.2e-17	30.2
WP_036919012.1\|84469_85630_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_004245607.1\|85654_86110_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_004249445.1\|86144_87170_+	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	1.3e-74	47.9
WP_004249446.1\|87237_87816_+	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	2.4e-33	41.5
WP_004245603.1\|87892_88468_+	TerD family protein	K4JRX3	Caulobacter_phage	1.2e-27	40.3
WP_004245602.1\|88564_89245_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_108716811.1\|89645_91190_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.0e-11	33.7

DBSCAN-SWA_2

647579 : 687124

Burkholderia_phage(23.08%)

head,tail,tRNA,terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049197309.1\|647579_648080_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	8.0e-41	56.4
WP_108716871.1\|648079_650047_-	hypothetical protein	H9C157	Pectobacterium_phage	7.6e-119	39.8
WP_108716872.1\|650061_650346_-	hypothetical protein	NA	NA	NA	NA
WP_108716873.1\|650357_650690_-	hypothetical protein	H9C158	Pectobacterium_phage	3.6e-05	38.1
WP_060556278.1\|650947_651148_+	hypothetical protein	NA	NA	NA	NA
WP_108716874.1\|651144_651525_-	hypothetical protein	NA	NA	NA	NA
WP_108717280.1\|651878_652520_-	LexA family transcriptional regulator	H9C160	Pectobacterium_phage	1.6e-30	35.6
WP_108716875.1\|652626_652812_+	hypothetical protein	A0A1W6JP24	Morganella_phage	1.9e-08	60.0
WP_036895397.1\|652852_653308_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	5.8e-30	55.4
WP_004250533.1\|653325_653550_+	hypothetical protein	H9C163	Pectobacterium_phage	9.5e-18	55.4
WP_108716876.1\|653551_654418_+	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	3.1e-32	59.7
WP_080047789.1\|654410_655004_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	1.4e-44	47.6
WP_080047790.1\|654996_656370_+	replicative DNA helicase	A0A192Y673	Salmonella_phage	4.2e-100	45.4
WP_080047791.1\|656567_656801_+	hypothetical protein	NA	NA	NA	NA
WP_049219165.1\|656797_657601_+	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	9.2e-63	46.1
WP_108716877.1\|658026_658620_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	4.3e-57	54.7
WP_049211163.1\|658631_658943_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	5.9e-34	68.8
WP_049211165.1\|658930_659464_+	antiterminator	Q5TJL7	Enterobacteria_phage	6.1e-39	51.9
WP_080047945.1\|659732_660731_+	nucleoid-associated protein	NA	NA	NA	NA
WP_108717281.1\|660746_661946_+	hypothetical protein	A0A291AUQ1	Sinorhizobium_phage	1.1e-32	27.5
WP_049211167.1\|662150_662420_+	bacteriophage protein	A0A2H4FNF0	Salmonella_phage	4.8e-16	46.7
WP_080047793.1\|662419_662890_+	lysozyme	A0A1W6JNW4	Morganella_phage	6.8e-50	59.9
WP_080047794.1\|663032_663494_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	2.9e-45	73.5
WP_006533523.1\|663613_663805_+	hypothetical protein	Q8W634	Enterobacteria_phage	3.6e-10	53.4
WP_080047795.1\|663874_664873_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	8.2e-37	37.0
WP_080047947.1\|665323_666685_+	TerL protein	A9YWZ6	Burkholderia_phage	2.4e-156	61.6
WP_080047796.1\|666689_668192_+	DUF1073 domain-containing protein	A0A2H4P6S9	Pseudomonas_phage	1.0e-99	42.4
WP_080047948.1\|668229_668943_+\|head	phage head morphogenesis protein	A0A2H5BG15	Pseudoalteromonas_phage	1.4e-33	35.7
WP_080047797.1\|668939_670199_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	1.6e-45	51.3
WP_049221480.1\|670198_670696_+	hypothetical protein	NA	NA	NA	NA
WP_004250578.1\|670695_671763_+	DUF2184 domain-containing protein	A0A088C493	Shewanella_sp._phage	1.1e-52	39.3
WP_080047798.1\|671832_672174_+	hypothetical protein	Q6IWU7	Burkholderia_phage	1.6e-08	35.5
WP_080047799.1\|672176_672608_+	DUF4054 domain-containing protein	Q6IWU8	Burkholderia_phage	3.3e-11	32.4
WP_080047800.1\|672607_673066_+	hypothetical protein	Q6IWU9	Burkholderia_phage	8.5e-13	39.6
WP_080047801.1\|673065_673437_+	hypothetical protein	NA	NA	NA	NA
WP_036937870.1\|673423_673939_+	hypothetical protein	NA	NA	NA	NA
WP_080047802.1\|673947_675435_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	7.9e-84	38.3
WP_080047803.1\|675445_675898_+	hypothetical protein	I7ATP4	Escherichia_phage	3.4e-22	38.8
WP_004250588.1\|675937_676396_+	hypothetical protein	Q6IWV4	Burkholderia_phage	6.7e-26	48.5
WP_080047804.1\|676479_678774_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.4e-18	27.7
WP_080047805.1\|678770_679298_+	hypothetical protein	NA	NA	NA	NA
WP_004250595.1\|679297_679615_+	hypothetical protein	Q6IWP9	Burkholderia_phage	7.4e-08	32.3
WP_036937853.1\|679580_680396_+	hypothetical protein	A1Z005	Burkholderia_virus	1.8e-10	26.0
WP_049197352.1\|680398_681091_+	hypothetical protein	A1Z003	Burkholderia_virus	9.1e-35	39.4
WP_080047806.1\|681087_681432_+	hypothetical protein	NA	NA	NA	NA
WP_004250602.1\|681424_682612_+	hypothetical protein	Q6IWQ3	Burkholderia_phage	1.1e-69	40.6
WP_004250603.1\|682608_683265_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	7.5e-39	40.3
WP_108716878.1\|683270_684710_+\|tail	phage tail protein	A0A2K9V2I0	Shigella_phage	2.2e-30	42.3
WP_080047809.1\|684839_685394_-	hypothetical protein	NA	NA	NA	NA
WP_080047810.1\|685497_685773_-	hypothetical protein	NA	NA	NA	NA
WP_036895334.1\|685797_686043_-	DinI-like family protein	NA	NA	NA	NA
WP_004248453.1\|686593_687124_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	1.4e-06	31.5

DBSCAN-SWA_3

886941 : 905809

Burkholderia_phage(26.67%)

holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108716897.1\|886941_887757_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.6e-54	43.4
WP_004248367.1\|888137_888437_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.9e-21	51.0
WP_017628006.1\|888439_888844_+	hypothetical protein	A0A0E3JJ20	Enterobacteria_phage	1.0e-25	46.6
WP_060555551.1\|888840_889290_+\|lysis	lysis protein	NA	NA	NA	NA
WP_004248364.1\|889326_889839_+	hypothetical protein	NA	NA	NA	NA
WP_004248362.1\|889847_891335_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	1.9e-77	35.7
WP_004243628.1\|891345_891798_+	hypothetical protein	NA	NA	NA	NA
WP_004243627.1\|891857_892316_+	hypothetical protein	Q6IWV4	Burkholderia_phage	1.9e-25	48.5
WP_108716899.1\|892398_894702_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	4.4e-17	23.8
WP_036971128.1\|894704_895199_+	hypothetical protein	NA	NA	NA	NA
WP_004243623.1\|895204_895525_+	hypothetical protein	NA	NA	NA	NA
WP_004243622.1\|895493_896306_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	9.0e-42	39.2
WP_004243621.1\|896308_897001_+	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.2e-29	35.7
WP_004243617.1\|896997_897342_+	hypothetical protein	NA	NA	NA	NA
WP_017628010.1\|897334_898522_+	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.9e-72	37.7
WP_004243615.1\|898518_899175_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.3e-35	39.9
WP_108716900.1\|899180_900416_+	hypothetical protein	Q6IWQ6	Burkholderia_phage	2.4e-14	34.1
WP_017628013.1\|900555_900735_-	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_004243612.1\|901303_901846_+	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	1.9e-19	34.7
WP_004243611.1\|901961_902738_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	5.1e-42	39.8
WP_049213336.1\|902741_903359_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.4e-89	68.3
WP_012368081.1\|903370_905809_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	5.0e-261	54.5

DBSCAN-SWA_4

1265223 : 1354044

128

Proteus_phage(18.52%)

head,capsid,tail,portal,integrase,terminase,protease,lysis

attL 1268344:1268398|attR 1321186:1321240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036895086.1\|1265223_1266219_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	9.3e-73	44.9
WP_012367595.1\|1266175_1266421_-	excisionase	NA	NA	NA	NA
WP_004247455.1\|1266417_1266756_-	DUF2591 domain-containing protein	A0A1P8DTH6	Proteus_phage	5.6e-14	45.0
WP_036976666.1\|1267689_1268148_-	ASCH domain-containing protein	M1F3E2	Salmonella_phage	1.8e-10	25.9
WP_036976668.1\|1268186_1268366_-	hypothetical protein	NA	NA	NA	NA
1268344:1268398	attL	NA	NA	NA	NA
WP_036976670.1\|1268433_1268862_-	single-stranded DNA-binding protein	A0A1W6JNW8	Morganella_phage	4.7e-50	73.9
WP_080047825.1\|1268851_1269550_-	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	7.0e-75	57.8
WP_036976671.1\|1269546_1270431_-	recombinase RecT	A0A2L1IV84	Escherichia_phage	2.2e-94	61.9
WP_036976673.1\|1270427_1270679_-	hypothetical protein	A0A1P8DTG3	Proteus_phage	3.2e-38	96.4
WP_036976674.1\|1270806_1270989_-	host cell division inhibitory peptide Kil	A0A1P8DTH8	Proteus_phage	2.8e-20	85.0
WP_049254977.1\|1271337_1271553_+	hypothetical protein	NA	NA	NA	NA
WP_036976675.1\|1271549_1271765_-	hypothetical protein	NA	NA	NA	NA
WP_049237113.1\|1271773_1272085_-	hypothetical protein	NA	NA	NA	NA
WP_155120987.1\|1272553_1272733_-	hypothetical protein	NA	NA	NA	NA
WP_080047827.1\|1272677_1273646_-	hypothetical protein	NA	NA	NA	NA
WP_036907954.1\|1273783_1274509_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	8.9e-41	42.0
WP_036907955.1\|1274614_1274842_+	helix-turn-helix domain-containing protein	E5AGE7	Erwinia_phage	6.0e-20	67.6
WP_036907956.1\|1274984_1275332_+	hypothetical protein	A0A1P8DTF0	Proteus_phage	2.6e-06	35.4
WP_108716939.1\|1275598_1276366_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.2e-22	51.9
WP_017628813.1\|1276365_1277751_+	AAA family ATPase	Q716D2	Shigella_phage	1.4e-114	47.7
WP_026090523.1\|1277778_1278108_+	hypothetical protein	A0A1C9LVV9	Vibrio_phage	1.1e-22	39.0
WP_036919942.1\|1278175_1278625_+	hypothetical protein	A0A2H4FNF5	Salmonella_phage	2.9e-13	32.2
WP_004245984.1\|1278703_1278994_+	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	7.2e-34	68.1
WP_004245982.1\|1279338_1279971_+	antitermination protein	I6PDF8	Cronobacter_phage	3.3e-23	34.3
WP_004247148.1\|1280282_1280804_+	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_060555895.1\|1280962_1281385_+	hypothetical protein	NA	NA	NA	NA
WP_004247489.1\|1281438_1281708_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	6.0e-19	53.5
WP_108716940.1\|1281707_1282178_+	lysozyme	A0A1W6JNW4	Morganella_phage	2.2e-48	61.2
WP_036907970.1\|1282320_1282782_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	5.7e-25	48.3
WP_036976683.1\|1282990_1283419_-	hypothetical protein	NA	NA	NA	NA
WP_108716941.1\|1283947_1284556_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	8.2e-64	68.0
WP_058336162.1\|1284558_1286046_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.6e-265	89.3
WP_108716942.1\|1286045_1287416_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.0e-118	48.6
WP_049235950.1\|1287412_1288534_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.8e-104	51.2
WP_108716943.1\|1288645_1289407_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.0e-67	59.3
WP_004245970.1\|1289420_1290374_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.4e-126	71.6
WP_162558083.1\|1290376_1290661_+	hypothetical protein	NA	NA	NA	NA
WP_004245968.1\|1290699_1291179_+	hypothetical protein	G8C7P9	Escherichia_phage	2.9e-32	47.7
WP_108716944.1\|1291181_1291532_+	hypothetical protein	I6PD77	Cronobacter_phage	6.4e-21	44.2
WP_004245966.1\|1291533_1292115_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.0e-47	51.6
WP_108716945.1\|1292111_1292513_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_004247505.1\|1292558_1293215_+	hypothetical protein	G8C7Q3	Escherichia_phage	8.6e-59	57.7
WP_004245960.1\|1293266_1293572_+	hypothetical protein	I6PDG2	Cronobacter_phage	6.6e-22	55.4
WP_080974786.1\|1293598_1293874_+	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	8.6e-13	49.3
WP_004247508.1\|1293902_1294109_-	hypothetical protein	NA	NA	NA	NA
WP_004247509.1\|1294261_1294633_+	hypothetical protein	E7C9U7	Salmonella_phage	4.4e-36	65.7
WP_004247510.1\|1294646_1294829_-	hypothetical protein	A0A192Y6A8	Salmonella_phage	3.7e-20	76.3
WP_141225987.1\|1295231_1295423_+	hypothetical protein	NA	NA	NA	NA
WP_108716946.1\|1295397_1295895_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_060555897.1\|1296154_1296991_-	antirepressor	I6S627	Salmonella_phage	1.7e-72	59.6
WP_049195353.1\|1297155_1297545_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049195351.1\|1297697_1298099_+	hypothetical protein	NA	NA	NA	NA
WP_064971710.1\|1298211_1298484_+	hypothetical protein	NA	NA	NA	NA
WP_049195350.1\|1298551_1298785_+	hypothetical protein	NA	NA	NA	NA
WP_053089294.1\|1298910_1299732_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	2.3e-21	50.9
WP_108716947.1\|1299792_1302723_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.1e-132	35.5
WP_004245945.1\|1302734_1303025_+	hypothetical protein	NA	NA	NA	NA
WP_004247516.1\|1303387_1303729_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	9.0e-28	50.0
WP_004247517.1\|1303725_1304469_+\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	7.1e-86	58.6
WP_004247518.1\|1304465_1305176_+	C40 family peptidase	A0A1P8DTI6	Proteus_phage	8.9e-86	62.0
WP_004247519.1\|1305172_1305778_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.9e-52	56.8
WP_108716948.1\|1305829_1310023_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	2.2e-301	54.4
WP_004245936.1\|1310016_1310385_+	hypothetical protein	NA	NA	NA	NA
WP_012367646.1\|1310386_1311001_+	hypothetical protein	NA	NA	NA	NA
WP_004247524.1\|1311050_1311311_+	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.9e-17	57.4
WP_012367647.1\|1312019_1312325_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017628485.1\|1312425_1313508_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_036919965.1\|1313517_1316052_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012367650.1\|1316061_1316787_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_012367651.1\|1316852_1317398_-	uroepithelial cell adherence major pilin UcaA	NA	NA	NA	NA
WP_012367652.1\|1317891_1318032_-	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	7.2e-16	93.5
WP_049211075.1\|1318306_1319302_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	5.4e-73	44.9
WP_049211074.1\|1319258_1319504_-	excisionase	NA	NA	NA	NA
WP_108716949.1\|1319500_1319839_-	DUF2591 domain-containing protein	A0A1P8DTH6	Proteus_phage	1.3e-13	45.0
WP_049211072.1\|1320165_1320411_-	hypothetical protein	NA	NA	NA	NA
WP_049211071.1\|1320403_1320673_-	hypothetical protein	A0A1P8DTI8	Proteus_phage	4.1e-15	53.9
WP_049211070.1\|1320672_1320852_-	hypothetical protein	NA	NA	NA	NA
WP_036932464.1\|1320881_1321208_-	hypothetical protein	NA	NA	NA	NA
WP_049212213.1\|1321241_1321580_-	hypothetical protein	NA	NA	NA	NA
1321186:1321240	attR	NA	NA	NA	NA
WP_049212214.1\|1321595_1322093_-	single-stranded DNA-binding protein	A0A220NRQ8	Escherichia_phage	5.7e-47	68.4
WP_108716950.1\|1322085_1322619_-	hypothetical protein	A0A1W6JP41	Morganella_phage	4.8e-52	58.9
WP_108716951.1\|1322675_1323503_-	YfdQ family protein	A0A2R2Z323	Escherichia_phage	5.5e-79	56.6
WP_108716952.1\|1323568_1323943_-	hypothetical protein	Q8HAA1	Salmonella_phage	7.1e-42	70.6
WP_152692713.1\|1324205_1324733_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.5e-16	32.5
WP_036905221.1\|1324945_1325149_-	hypothetical protein	NA	NA	NA	NA
WP_036905224.1\|1325244_1325877_-	LexA family transcriptional regulator	K7PLZ5	Enterobacterial_phage	3.9e-40	44.8
WP_036905227.1\|1325979_1326171_+	cell division protein	NA	NA	NA	NA
WP_071233569.1\|1326222_1326885_+	hypothetical protein	NA	NA	NA	NA
WP_036900998.1\|1326900_1327359_+	hypothetical protein	K7PJS5	Enterobacterial_phage	6.0e-27	50.8
WP_004247132.1\|1327645_1327825_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	1.1e-11	55.2
WP_108716954.1\|1327837_1328899_+	replication protein	H2DE83	Erwinia_phage	7.9e-30	55.3
WP_049219109.1\|1329533_1329929_+	hypothetical protein	NA	NA	NA	NA
WP_036904907.1\|1330001_1330385_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.7e-27	53.7
WP_108716955.1\|1330403_1331207_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	4.4e-89	62.7
WP_108716956.1\|1331203_1332229_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	9.9e-86	47.7
WP_049211559.1\|1332256_1332937_+	hypothetical protein	A0A1W6JP37	Morganella_phage	3.6e-52	50.0
WP_049210579.1\|1333095_1333290_+	hypothetical protein	NA	NA	NA	NA
WP_108716957.1\|1333363_1334386_+	site-specific DNA-methyltransferase	A0A1W6JP25	Morganella_phage	5.3e-132	70.1
WP_087726597.1\|1334638_1335061_+	hypothetical protein	NA	NA	NA	NA
WP_087726596.1\|1335217_1335553_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_108716958.1\|1335633_1335870_+	hypothetical protein	NA	NA	NA	NA
WP_049217868.1\|1335823_1336081_-	hypothetical protein	NA	NA	NA	NA
WP_046334538.1\|1336219_1336489_+	bacteriophage protein	A0A2H4FNF0	Salmonella_phage	2.7e-19	53.5
WP_087726540.1\|1336488_1336959_+	lysozyme	A0A1W6JNW4	Morganella_phage	6.8e-50	61.2
WP_004250565.1\|1337101_1337563_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	8.5e-13	34.0
WP_108716959.1\|1338211_1338796_+	hypothetical protein	H6WRU8	Salmonella_phage	2.4e-20	41.0
WP_108716960.1\|1338792_1339002_+	hypothetical protein	NA	NA	NA	NA
WP_108716961.1\|1339033_1339342_+	hypothetical protein	Q8HA83	Salmonella_phage	2.2e-33	68.0
WP_108716962.1\|1339374_1339713_+	HNH endonuclease	F1C587	Cronobacter_phage	7.1e-41	67.0
WP_006537823.1\|1339715_1339928_+	hypothetical protein	A0A1W6JP16	Morganella_phage	1.4e-07	44.8
WP_036905779.1\|1340052_1340520_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.5e-44	59.7
WP_108716963.1\|1340473_1342216_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.8e-146	46.1
WP_108716964.1\|1342216_1343548_+\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	2.7e-200	76.7
WP_058336090.1\|1343544_1344396_+\|protease	Clp protease ClpP	A0A1P8DTI2	Proteus_phage	5.4e-130	84.6
WP_058336091.1\|1344407_1345622_+\|capsid	phage major capsid protein	A0A1P8DTJ7	Proteus_phage	1.9e-200	89.4
WP_108716965.1\|1345667_1345886_+	hypothetical protein	A0A1P8DTJ1	Proteus_phage	6.4e-11	81.0
WP_058336093.1\|1345885_1346212_+\|head,tail	phage gp6-like head-tail connector protein	A0A1P8DTJ4	Proteus_phage	5.8e-40	75.0
WP_108716966.1\|1346220_1346550_+\|head	phage head closure protein	B5WZS5	Pseudomonas_phage	1.1e-11	38.7
WP_108716967.1\|1346539_1347013_+	hypothetical protein	A0A0R6PHU8	Moraxella_phage	4.3e-12	31.5
WP_004251583.1\|1347018_1347360_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_108716968.1\|1347369_1348035_+	hypothetical protein	NA	NA	NA	NA
WP_004251577.1\|1348099_1348516_+	hypothetical protein	NA	NA	NA	NA
WP_072071177.1\|1348512_1348791_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_108716969.1\|1348831_1352119_+\|tail	phage tail tape measure protein	Q8W6T6	Burkholderia_virus	9.6e-50	40.2
WP_108716970.1\|1352119_1352716_+	hypothetical protein	S4TSP7	Salmonella_phage	3.5e-51	53.3
WP_006537803.1\|1352715_1353297_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	3.1e-52	50.0
WP_004251562.1\|1353308_1353614_+	hypothetical protein	NA	NA	NA	NA
WP_004251558.1\|1353645_1354044_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	9.2e-32	47.7

DBSCAN-SWA_5

1782616 : 1789371

Proteus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157677999.1\|1782616_1782754_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	7.8e-15	81.4
WP_004247902.1\|1783148_1783313_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.6e-22	92.6
WP_108717015.1\|1783806_1784769_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_108717016.1\|1784749_1786339_+	AAA family ATPase	C7BGE8	Burkholderia_phage	5.4e-14	34.5
WP_108717017.1\|1786335_1786965_+	TIGR02646 family protein	NA	NA	NA	NA
WP_162558075.1\|1787883_1788438_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	6.5e-68	81.3
WP_108717019.1\|1788462_1789047_-	hypothetical protein	A0A2H4PRH0	Proteus_phage	4.0e-23	70.0
WP_108717020.1\|1789047_1789371_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.2e-26	62.3

DBSCAN-SWA_6

1792873 : 1801197

Phage_21(25.0%)

integrase

attL 1787190:1787206|attR 1800941:1800957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1787190:1787206	attL	NA	NA	NA	NA
WP_036970167.1\|1792873_1793263_-	membrane protein	S4TRS4	Salmonella_phage	2.1e-12	35.0
WP_049206751.1\|1793385_1793613_+	hypothetical protein	NA	NA	NA	NA
WP_108717022.1\|1793654_1794671_-	site-specific DNA-methyltransferase	A0A1W6JP25	Morganella_phage	3.0e-127	66.2
WP_049202017.1\|1794972_1795179_-	hypothetical protein	NA	NA	NA	NA
WP_004247850.1\|1795485_1795758_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.3e-16	67.2
WP_004247849.1\|1795763_1796021_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012367807.1\|1796175_1796436_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004247847.1\|1796657_1797056_-	antitermination protein Q	B6SCZ7	Bacteriophage	4.6e-31	55.3
WP_036970213.1\|1797068_1798142_-	hypothetical protein	A0A2H4JEZ8	uncultured_Caudovirales_phage	4.9e-27	36.3
WP_108717285.1\|1798472_1799120_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	3.7e-46	44.0
WP_049206746.1\|1799376_1799619_+	excisionase	NA	NA	NA	NA
WP_036970219.1\|1799599_1800727_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	3.7e-118	59.3
WP_108717023.1\|1801023_1801197_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-18	83.3
1800941:1800957	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1967439 : 2046440

Bacillus_phage(18.75%)

plate,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004244624.1\|1967439_1967871_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_108717048.1\|1967878_1969654_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004244621.1\|1969617_1970655_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004247648.1\|1970659_1971928_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_004244619.1\|1971929_1972481_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_017628433.1\|1972473_1973841_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004244617.1\|1973833_1974589_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004247646.1\|1974597_1977321_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.4e-83	30.5
WP_004244614.1\|1977324_1978113_+	hypothetical protein	NA	NA	NA	NA
WP_004244612.1\|1978114_1978765_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_004244611.1\|1978770_1980234_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004244610.1\|1980236_1983785_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004244609.1\|1983822_1985178_+	membrane protein	NA	NA	NA	NA
WP_004247642.1\|1985170_1986907_+	type VI secretion protein	NA	NA	NA	NA
WP_004244607.1\|1986997_1987471_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_004247640.1\|1987563_1988214_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004244605.1\|1988263_1988812_-	YcbK family protein	NA	NA	NA	NA
WP_004247638.1\|1989143_1990859_-	L,D-transpeptidase	NA	NA	NA	NA
WP_004247637.1\|1991208_1991922_-	acid phosphatase AphA	NA	NA	NA	NA
WP_004247636.1\|1992328_1992982_+	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.2e-102	80.4
WP_004247635.1\|1993263_1997721_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_004247634.1\|1997717_1998449_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_004244597.1\|1998429_1999752_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_004247633.1\|1999761_2000535_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_004247632.1\|2000914_2001745_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_004244594.1\|2001867_2002629_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_004244593.1\|2002633_2002813_-	hypothetical protein	NA	NA	NA	NA
WP_004247631.1\|2003227_2003443_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_004244590.1\|2003938_2004940_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_004244589.1\|2004936_2006682_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.4e-61	30.9
WP_004244587.1\|2009525_2009813_-	integration host factor subunit beta	A7KV42	Bacillus_phage	8.4e-11	40.0
WP_004244586.1\|2009877_2011551_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_004244585.1\|2011732_2012410_-	(d)CMP kinase	NA	NA	NA	NA
WP_004247629.1\|2012698_2013985_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_004244582.1\|2014181_2015270_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	5.7e-84	47.0
WP_104459796.1\|2015406_2016837_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.5e-07	24.8
WP_108717050.1\|2016973_2018227_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_004244579.1\|2018301_2019339_-	L-asparaginase 2	NA	NA	NA	NA
WP_036971369.1\|2019566_2021324_+	30S ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA
WP_004244577.1\|2021994_2022849_+	formate transporter FocA	NA	NA	NA	NA
WP_004244576.1\|2022903_2025186_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-159	41.6
WP_004244575.1\|2025293_2026034_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	2.3e-20	27.0
WP_108717051.1\|2026391_2027297_+	hypothetical protein	NA	NA	NA	NA
WP_108717052.1\|2027369_2028419_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_108717053.1\|2028819_2029152_+	hypothetical protein	NA	NA	NA	NA
WP_004244571.1\|2029331_2030621_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	46.2
WP_012367706.1\|2030754_2032104_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.8e-79	40.6
WP_004244569.1\|2032114_2032720_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_108717054.1\|2032832_2036663_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.7e-90	49.3
WP_004244566.1\|2036790_2037285_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004247618.1\|2037827_2038787_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-64	45.8
WP_036894531.1\|2038925_2040695_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	3.0e-21	23.5
WP_004244562.1\|2040697_2042449_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.4e-18	31.7
WP_004247616.1\|2042450_2043143_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004244560.1\|2043462_2043681_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_004244559.1\|2043800_2046095_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.3e-170	42.9
WP_004244558.1\|2046125_2046440_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.5e-13	44.1

DBSCAN-SWA_8

2212992 : 2268440

Cronobacter_phage(19.15%)

tail,tRNA,integrase,terminase,lysis,bacteriocin

attL 2214769:2214784|attR 2275656:2275671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012367653.1\|2212992_2214660_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	1.0e-286	85.0
2214769:2214784	attL	NA	NA	NA	NA
WP_046335367.1\|2214902_2215133_+	DNA polymerase III subunit theta	A0A1P8DTI0	Proteus_phage	1.2e-31	92.1
WP_046335368.1\|2215492_2215747_-	cloacin	NA	NA	NA	NA
WP_036969576.1\|2215964_2216222_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_052715557.1\|2216224_2218087_-	hypothetical protein	NA	NA	NA	NA
WP_004247523.1\|2218519_2219134_-	hypothetical protein	NA	NA	NA	NA
WP_004245936.1\|2219135_2219504_-	hypothetical protein	NA	NA	NA	NA
WP_108716948.1\|2219497_2223691_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	2.2e-301	54.4
WP_046334564.1\|2223742_2224330_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	2.9e-58	60.4
WP_046334563.1\|2224326_2225037_-	C40 family peptidase	F1C573	Cronobacter_phage	1.8e-86	66.4
WP_004245940.1\|2225033_2225777_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	1.4e-86	59.0
WP_004247516.1\|2225773_2226115_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	9.0e-28	50.0
WP_046334562.1\|2226258_2226459_+	hypothetical protein	NA	NA	NA	NA
WP_004247513.1\|2226478_2226769_-	hypothetical protein	NA	NA	NA	NA
WP_004247512.1\|2226808_2227021_-	hypothetical protein	NA	NA	NA	NA
WP_004247511.1\|2227043_2229983_-\|tail	phage tail tape measure protein	A0A2P0WA05	Enterobacter_phage	1.2e-141	35.4
WP_046334561.1\|2230042_2230912_-	hypothetical protein	NA	NA	NA	NA
WP_049257266.1\|2230949_2231843_-	hypothetical protein	NA	NA	NA	NA
WP_046334560.1\|2231839_2232097_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_004245955.1\|2232210_2232372_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_046334559.1\|2232441_2233275_+	antirepressor	I6S627	Salmonella_phage	3.7e-67	55.6
WP_109880200.1\|2233547_2234549_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	1.8e-36	31.0
WP_004247510.1\|2234883_2235066_+	hypothetical protein	A0A192Y6A8	Salmonella_phage	3.7e-20	76.3
WP_004247509.1\|2235079_2235451_-	hypothetical protein	E7C9U7	Salmonella_phage	4.4e-36	65.7
WP_080942618.1\|2235837_2236113_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	6.6e-13	49.3
WP_004245960.1\|2236139_2236445_-	hypothetical protein	I6PDG2	Cronobacter_phage	6.6e-22	55.4
WP_004247505.1\|2236496_2237153_-	hypothetical protein	G8C7Q3	Escherichia_phage	8.6e-59	57.7
WP_046334555.1\|2237198_2237600_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_046334553.1\|2237596_2238178_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.8e-47	51.6
WP_046334552.1\|2238179_2238530_-	hypothetical protein	I6PD77	Cronobacter_phage	5.1e-18	41.6
WP_004245968.1\|2238532_2239012_-	hypothetical protein	G8C7P9	Escherichia_phage	2.9e-32	47.7
WP_107033975.1\|2239051_2239336_-	hypothetical protein	NA	NA	NA	NA
WP_046334550.1\|2239338_2240292_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.4e-126	71.2
WP_046334549.1\|2240305_2241079_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.5e-67	59.7
WP_046334548.1\|2241161_2241749_-	hypothetical protein	NA	NA	NA	NA
WP_046334547.1\|2241765_2242869_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	2.1e-102	50.4
WP_046334545.1\|2242865_2244236_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.8e-120	49.4
WP_046334544.1\|2244235_2245810_-\|terminase	terminase	G8C7P3	Escherichia_phage	7.8e-284	86.9
WP_046334543.1\|2245806_2246373_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	1.8e-57	64.1
WP_046334542.1\|2246398_2246668_+	hypothetical protein	NA	NA	NA	NA
WP_004245979.1\|2246879_2247086_-	hypothetical protein	NA	NA	NA	NA
WP_046334540.1\|2248011_2248473_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	2.8e-08	34.1
WP_046334539.1\|2248615_2249086_-	lysozyme	A0A1W6JNW4	Morganella_phage	2.6e-49	61.2
WP_046334538.1\|2249085_2249355_-	bacteriophage protein	A0A2H4FNF0	Salmonella_phage	2.7e-19	53.5
WP_046334537.1\|2249421_2249844_-	hypothetical protein	NA	NA	NA	NA
WP_046334536.1\|2249987_2250395_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_046334535.1\|2251043_2251256_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.4e-25	77.1
WP_058336160.1\|2251840_2252299_-	Hsp20 family protein	NA	NA	NA	NA
WP_046335273.1\|2252538_2253171_-	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-22	33.8
WP_046335274.1\|2253170_2253527_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.4e-44	72.4
WP_004245984.1\|2253523_2253814_-	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	7.2e-34	68.1
WP_012367619.1\|2253892_2254342_-	hypothetical protein	A0A2H4FNF5	Salmonella_phage	3.7e-13	32.2
WP_046335275.1\|2254367_2255753_-	AAA family ATPase	Q716D2	Shigella_phage	1.0e-114	47.7
WP_012367617.1\|2255752_2256520_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.5e-22	51.9
WP_046335276.1\|2256786_2257134_-	hypothetical protein	A0A1P8DTF0	Proteus_phage	3.4e-06	35.4
WP_004245989.1\|2257297_2257507_-	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	3.3e-33	98.6
WP_004245990.1\|2257589_2258273_+	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	1.5e-130	98.2
WP_004245991.1\|2258281_2258623_+	DUF3024 domain-containing protein	A0A1W6JP12	Morganella_phage	2.1e-37	62.8
WP_004247475.1\|2258748_2259873_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_004247474.1\|2259869_2260379_+	DUF4411 family protein	NA	NA	NA	NA
WP_108717071.1\|2260802_2261120_+	hypothetical protein	A0A1W6JNZ0	Morganella_phage	6.0e-18	51.4
WP_036976675.1\|2261128_2261344_+	hypothetical protein	NA	NA	NA	NA
WP_049254977.1\|2261340_2261556_-	hypothetical protein	NA	NA	NA	NA
WP_036895085.1\|2261725_2262268_+	hypothetical protein	A0A1B1W2E3	Salmonella_phage	1.8e-33	38.5
WP_004247466.1\|2262378_2262606_+	hypothetical protein	NA	NA	NA	NA
WP_017628822.1\|2262857_2263112_+	hypothetical protein	NA	NA	NA	NA
WP_017628824.1\|2263257_2263578_+	hypothetical protein	NA	NA	NA	NA
WP_017628825.1\|2263579_2264464_+	ATP-binding protein	A0A1B1P9H8	Acinetobacter_phage	1.9e-61	52.0
WP_088206760.1\|2264453_2264993_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	8.1e-55	59.7
WP_094960056.1\|2265253_2265709_+	ASCH domain-containing protein	M1F3E2	Salmonella_phage	5.4e-12	25.9
WP_049199156.1\|2265771_2266026_+	hypothetical protein	NA	NA	NA	NA
WP_088206763.1\|2266096_2266351_+	hypothetical protein	A0A1P8DTI8	Proteus_phage	3.8e-23	64.3
WP_088206764.1\|2266343_2266589_+	hypothetical protein	NA	NA	NA	NA
WP_154599060.1\|2266747_2266909_+	hypothetical protein	A0A1P8DTF6	Proteus_phage	2.6e-25	100.0
WP_094960055.1\|2266901_2267240_+	DUF2591 domain-containing protein	A0A1P8DTH6	Proteus_phage	1.9e-14	45.0
WP_012367595.1\|2267236_2267482_+	excisionase	NA	NA	NA	NA
WP_108717072.1\|2267438_2268440_+\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	9.1e-68	43.1
2275656:2275671	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2304355 : 2316317

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004246054.1\|2304355_2305567_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	8.6e-105	49.1
WP_026090527.1\|2305765_2306029_+	YbeD family protein	NA	NA	NA	NA
WP_004246056.1\|2306386_2307031_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_004246057.1\|2307132_2308098_+	lipoyl synthase	NA	NA	NA	NA
WP_004246058.1\|2308113_2308488_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.7e-25	52.0
WP_004246068.1\|2309556_2309766_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	74.2
WP_004246069.1\|2309963_2310437_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_004246071.1\|2310718_2310943_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-13	47.9
WP_004246072.1\|2310954_2311359_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	3.7e-12	38.5
WP_004252248.1\|2311387_2313514_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-205	51.3
WP_004247427.1\|2313539_2314508_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.0
WP_004247426.1\|2315117_2316317_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.8e-28	37.6

DBSCAN-SWA_10

2555208 : 2629932

Sodalis_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004239726.1\|2555208_2556273_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004239729.1\|2558390_2560760_-	TonB-dependent receptor	NA	NA	NA	NA
WP_001351060.1\|2560770_2562852_-	TonB-dependent receptor	NA	NA	NA	NA
WP_077788456.1\|2563770_2563968_+	hypothetical protein	NA	NA	NA	NA
WP_001351058.1\|2564170_2564407_-	DUF417 family protein	NA	NA	NA	NA
WP_071550302.1\|2564312_2564531_-	hypothetical protein	NA	NA	NA	NA
WP_000669584.1\|2565412_2565823_-	fimbrial protein	NA	NA	NA	NA
WP_105874332.1\|2566668_2566725_+	hypothetical protein	NA	NA	NA	NA
WP_004239731.1\|2567039_2567351_+	ornithine decarboxylase	NA	NA	NA	NA
WP_004239732.1\|2567365_2567698_-	exported protein	NA	NA	NA	NA
WP_017827828.1\|2567732_2567924_-	hypothetical protein	NA	NA	NA	NA
WP_036919097.1\|2568141_2569053_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	7.2e-56	43.1
WP_000202155.1\|2569073_2569541_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_000370330.1\|2569973_2570174_+	hypothetical protein	NA	NA	NA	NA
WP_004239734.1\|2570424_2572479_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	7.4e-40	28.9
WP_000748138.1\|2572488_2573025_-	hypothetical protein	NA	NA	NA	NA
WP_000437242.1\|2573072_2573777_-	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_000115888.1\|2574059_2574578_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_004239736.1\|2574827_2576123_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004239737.1\|2576249_2576534_-	hypothetical protein	NA	NA	NA	NA
WP_042848758.1\|2576523_2577114_-	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_000845359.1\|2577638_2579288_-	hypothetical protein	NA	NA	NA	NA
WP_000549132.1\|2579302_2580655_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	6.6e-122	53.5
WP_001095747.1\|2580866_2581298_+	hypothetical protein	NA	NA	NA	NA
WP_001351053.1\|2581375_2582263_-	ParA family protein	NA	NA	NA	NA
WP_004247373.1\|2582710_2582959_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.9e-07	38.5
WP_036905867.1\|2583178_2583451_-\|transposase	transposase	NA	NA	NA	NA
WP_004252392.1\|2583677_2583947_-	hypothetical protein	NA	NA	NA	NA
WP_036900799.1\|2583950_2584529_-	hypothetical protein	NA	NA	NA	NA
WP_107034653.1\|2585653_2585761_+	DUF2618 domain-containing protein	NA	NA	NA	NA
WP_108717087.1\|2586134_2588297_+	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_004247370.1\|2588360_2589689_+	putrescine-ornithine antiporter	NA	NA	NA	NA
WP_049196952.1\|2589818_2590496_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_001985443.1\|2590763_2592023_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_001985442.1\|2592042_2594205_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	8.0e-29	31.5
WP_001985440.1\|2594229_2595483_-	TolC family protein	NA	NA	NA	NA
WP_026090475.1\|2595587_2597525_-	hypothetical protein	NA	NA	NA	NA
WP_004244870.1\|2602593_2602899_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004244871.1\|2603540_2604332_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004244872.1\|2604305_2605163_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036919891.1\|2605501_2606653_-	hypothetical protein	NA	NA	NA	NA
WP_052124582.1\|2606665_2607202_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_036919888.1\|2607201_2607735_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_036919887.1\|2607727_2608156_-	hypothetical protein	NA	NA	NA	NA
WP_036919885.1\|2608187_2608919_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_036972201.1\|2608954_2611477_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_036919880.1\|2611537_2612110_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_036972197.1\|2612299_2612860_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_004247348.1\|2613004_2613289_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104459489.1\|2613933_2614758_+	hypothetical protein	NA	NA	NA	NA
WP_036969813.1\|2614754_2615207_+	hypothetical protein	NA	NA	NA	NA
WP_036969810.1\|2615369_2616338_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_036969808.1\|2616456_2617878_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_104731524.1\|2617903_2620621_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_108717089.1\|2620613_2621258_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_004247343.1\|2621313_2622699_+	carbohydrate porin	NA	NA	NA	NA
WP_108717090.1\|2623067_2624324_+	Zn-dependent hydrolase	NA	NA	NA	NA
WP_004244894.1\|2624317_2625202_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_108717091.1\|2625669_2627661_+\|protease	metalloprotease	NA	NA	NA	NA
WP_036919866.1\|2627967_2629932_+\|protease	metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_11

3687802 : 3696649

Morganella_phage(50.0%)

integrase

attL 3678052:3678066|attR 3700895:3700909

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3678052:3678066	attL	NA	NA	NA	NA
WP_108717187.1\|3687802_3689014_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.3e-158	68.7
WP_108717188.1\|3689227_3689887_+	hypothetical protein	NA	NA	NA	NA
WP_108717189.1\|3690066_3690285_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	4.3e-07	45.3
WP_108717190.1\|3690284_3690677_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.5e-29	58.7
WP_108717191.1\|3690692_3690968_+	hypothetical protein	NA	NA	NA	NA
WP_108717192.1\|3690989_3691784_+	phage antirepressor Ant	A0A0R6PJV6	Moraxella_phage	1.7e-24	48.3
WP_108717193.1\|3691884_3692076_-	hypothetical protein	NA	NA	NA	NA
WP_162558080.1\|3692125_3692422_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_108717195.1\|3692414_3692609_+	hypothetical protein	NA	NA	NA	NA
WP_108717196.1\|3692601_3692808_+	hypothetical protein	NA	NA	NA	NA
WP_108717197.1\|3692800_3692998_+	hypothetical protein	A0A1W6JPF0	Morganella_phage	3.2e-09	66.0
WP_108717198.1\|3692985_3693294_+	hypothetical protein	NA	NA	NA	NA
WP_108717199.1\|3693293_3693836_+	hypothetical protein	NA	NA	NA	NA
WP_108717200.1\|3693931_3696649_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	0.0e+00	67.4
3700895:3700909	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029129_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029129_1

11328-11440

Orphan

Consensus_repeat	Method
ATATCGGGATTTACACACACAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029129_1

>merge|NZ_CP029129|1|11328-11440|CRISPRCasFinder
TTATCGGGATTCACACACAAATAAATTCATACGATGATCACGAAATATCGGGATTTACACACACAGTAGTTACAATATCAACACAAAAAACATCGGGATTTGCACACAATATA

>NZ_CP029129|1|1|11328-11440|CRISPRCasFinder
TTATCGGGATTCACACACAAATA	AATTCATACGATGATCACGAA
ATATCGGGATTTACACACACAGT	AGTTACAATATCAACACAAAAA
ACATCGGGATTTGCACACAATATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029129.1\|WP_049195411.1\|9472_9838_-\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP029129.1\|WP_049195517.1\|9933_10338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029129.1\|WP_036896417.1\|10347_11304_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP029129.1\|WP_012368894.1\|6764_7028_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP029129.1\|WP_036896419.1\|9184_9388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029129.1\|WP_012368892.1\|5794_6313_-\|colicin-immunity-protein-Cui	unknown	unknown	gnl\|CDD\|367697
NZ_CP029129.1\|WP_012368891.1\|4248_5715_+\|putative-colicin	unknown	unknown	gnl\|CDD\|334348
NZ_CP029129.1\|WP_108716782.1\|12255_12408_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_CP029129.1\|WP_012368893.1\|6453_6756_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP029129.1\|WP_036896424.1\|8542_8824_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_CP029129.1\|WP_049195410.1\|7645_8299_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760

Protein	Function_ID	Function_description	E-value
NZ_CP029129.1\|WP_049195411.1\|9472_9838_-\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	3.50794e-09
NZ_CP029129.1\|WP_012368891.1\|4248_5715_+\|putative-colicin	gnl\|CDD\|334348	pfam01024, Colicin, Colicin pore forming domain.	2.59688e-83
NZ_CP029129.1\|WP_036896417.1\|10347_11304_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	4.86953e-91
NZ_CP029129.1\|WP_012368894.1\|6764_7028_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.57284e-11
NZ_CP029129.1\|WP_012368892.1\|5794_6313_-\|colicin-immunity-protein-Cui	gnl\|CDD\|367697	pfam03857, Colicin_im, Colicin immunity protein. Colicin immunity proteins are plasmid-encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress.	2.29694e-07
NZ_CP029129.1\|WP_108716782.1\|12255_12408_+\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	1.38179e-10
NZ_CP029129.1\|WP_012368893.1\|6453_6756_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.71059e-14
NZ_CP029129.1\|WP_036896424.1\|8542_8824_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00798589
NZ_CP029129.1\|WP_049195410.1\|7645_8299_+\|AAA-family-ATPase	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.69774e-21

>NZ_CP029129.1|WP_036896417.1|10347_11304_-|replication-initiator-protein-A
MKTLRPKKYKEEEFFIADEVEISSFRDELASMEHPFFALKGGDDKVREYRNNNISVLVRPATGIGLATVFDKDIWIYAISKLQQAIFEGKPISRTIAFTPYEFFVTTNRDKGGRSYDELKKALERLAGTRIQTNIVYSSEKQETENFGLIDKWRILEEKKGRLDIGMVEVTLPDWLYQGITKNKVLKINSDYFRIRKAIDRRIYEIARKHCGYQKSFSLSIELLHLKSGATSNKREFKRSIKKLSLVNDLPDYEVLLDAENDCVTFTNRHFDESLEKKMNQLAKNKNMIEEVVSNGKLPKKLQKKVATIADKISKEKR
>NZ_CP029129.1|WP_049195517.1|9933_10338_-|hypothetical-protein
MAKIYQFPQGKEKKEIQAKLKKSRSVKIKKDIKKSSLSHILSMLFLGIRYFLGVTLDVLLLMVVSIISVFRYLIIPLGIFALILFYYNNEKMWNVEMTVTMALMVSSLINPEVLQDIQPFQTLFGVKSPQSEAK
>NZ_CP029129.1|WP_049195411.1|9472_9838_-|DUF2726-domain-containing-protein
MSYLRQQFLTEEESKLLVILQENVKENYHVFCKVRLSEFLYSSQKMGTSEFFNEFEIINSINLPFAIYDTLENQLVAAISYINPIEKSNLLENQDIKVIHLTMLKDTLTNGELSMFYSDSV
>NZ_CP029129.1|WP_036896419.1|9184_9388_+|hypothetical-protein
MKQLTEFELEIIHAVVVLQELHDKPELSASVLKECNLSEIDCNELDDYEKDNLRIINKEYLVNLKGL
>NZ_CP029129.1|WP_036896424.1|8542_8824_+|ribbon-helix-helix-protein,-CopG-family
MKLQKPDLDLTDSSTKTKNSTTQFIKAGDKRPTTSNKLIPSTFRLPESAISILDTEAERAGQNKTAILKAAILAYSNLDENSKNLALLESFKL
>NZ_CP029129.1|WP_049195410.1|7645_8299_+|AAA-family-ATPase
MILVFASDKGGVGKTTTAINMAVMLKRKNKSVIMLKADRNRDLFVWSDIRAQAGFSAIPIHEAFGNISDEIKRLEKLCDVVVVDCAGHDSSEFRSALTVADVLLTLVKPSSSLEKNTLTNVTKTVRTAQKQHGNSDLKAHVLMTRIKSHKLQDAVSLENELKSDEIWLQPLKNRISELDIFENAVNAGVGVHEVEKASSLGVAKAQIELIAKEIGLI
>NZ_CP029129.1|WP_012368894.1|6764_7028_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MEIIPAQLAKNQFGDLLMKAQREPVQISKHGKRVAVVISPDEYDQFTQLKLQNLKSILAESIEQAERGELHHIDDVFAPLTSNEIEG
>NZ_CP029129.1|WP_012368893.1|6453_6756_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSVLFTKKAKEHIRTIRRYSLTHWGKNVAETYINCLRITIINIIEKQPSIGIDRSDDLFTGIRSFPVESHIIYYREVENGIEVLAVLHQSQDPYIHIKRD
>NZ_CP029129.1|WP_012368892.1|5794_6313_-|colicin-immunity-protein-Cui
MDNKNHPNDHLLIKWGSIFIFISAIPIFIIFYFNDIDILFAVYEKINNIPSTYSSTYPIISKLSFFYCKLSPLIVLLFFIFCYKKLTLVKPIPINKLIINVIFPCLVITIISLYVLYFYNTDISDSGWSILKTISSNKHLLFGYYIAIFLGYYVWLFLFFISFIYLPFKSIR
>NZ_CP029129.1|WP_012368891.1|4248_5715_+|putative-colicin
MSKNNHSAETDHLSVTADRPSKGDLGSGPVGKGDGGDRNIISLSDPNASFSYTTSTIEGLEGLNFTVTVHGARIINPQNGHTTNNIEVDGKGNSVDYKKNNVQNNQLELPIPYNNKLARDRDLGRLTSRIRKDYFDLKNNKARVSIYNGHYIHTVTFDDAGNVQNISEEYIEKTYNRYSKGIPNEKKDRLEEVKRFAILGYKTEPSNILDYNVKIKEYEFIFTLNKLGFIEKFSKKIIKASQYESRQLNAFYKDLNIEQDEKKENLAKLMVVNAYQSYPQNKKFIQDAEKEALMGAADIITNTGEKISKHLGEKYKTIANEIASDLRNFQGKKLRSLSDALKMMEKINRNPNIKIKQADRVVLANAVRHVDTKILSENFQRLGKSFGVLGKVLSVEKLREKAAIGFETGNWKPLMLEVEAMIISGYATGIAISIAISFISSIASFLAIGALPTTLAIIATIMLISYLASLIDDKVVDKINNLLIPEAH
>NZ_CP029129.1|WP_108716782.1|12255_12408_+|DnaJ-domain-containing-protein
MNVQEALNIFGLSGELTEQDIKTAYKKAALKYHPDRNPLGAELMKAINAV

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Crispr_ID: NZ_CP029129_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029129_2

11519-11639

Orphan

Consensus_repeat	Method
ATATCGGGATTTACACACACAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029129_2

>merge|NZ_CP029129|2|11519-11639|CRISPRCasFinder
TTATCGGGATTTACACACAAAAAACGAAATAATTACTGTACAAATTTCAAACAGCGATTCGGGATTTACACACACCTCATTCGGGATTTACACACACTGACACGGGATTTACACACACGGA

>NZ_CP029129|2|2|11519-11639|CRISPRCasFinder
TTATCGGGATTTACACACAAAAA	ACGAAATAATTACTGTACAAATTTCAAACAGC
GATTCGGGATTTACACACACCTC	ATTCGGGATTTACACACACT
GACACGGGATTTACACACACGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029129.1\|WP_049195411.1\|9472_9838_-\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP029129.1\|WP_049195517.1\|9933_10338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029129.1\|WP_036896417.1\|10347_11304_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP029129.1\|WP_012368894.1\|6764_7028_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP029129.1\|WP_036896419.1\|9184_9388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029129.1\|WP_012368892.1\|5794_6313_-\|colicin-immunity-protein-Cui	unknown	unknown	gnl\|CDD\|367697
NZ_CP029129.1\|WP_012368891.1\|4248_5715_+\|putative-colicin	unknown	unknown	gnl\|CDD\|334348
NZ_CP029129.1\|WP_108716782.1\|12255_12408_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_CP029129.1\|WP_012368893.1\|6453_6756_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP029129.1\|WP_036896424.1\|8542_8824_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_CP029129.1\|WP_049195410.1\|7645_8299_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760

Protein	Function_ID	Function_description	E-value
NZ_CP029129.1\|WP_049195411.1\|9472_9838_-\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	3.50794e-09
NZ_CP029129.1\|WP_012368891.1\|4248_5715_+\|putative-colicin	gnl\|CDD\|334348	pfam01024, Colicin, Colicin pore forming domain.	2.59688e-83
NZ_CP029129.1\|WP_036896417.1\|10347_11304_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	4.86953e-91
NZ_CP029129.1\|WP_012368894.1\|6764_7028_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.57284e-11
NZ_CP029129.1\|WP_012368892.1\|5794_6313_-\|colicin-immunity-protein-Cui	gnl\|CDD\|367697	pfam03857, Colicin_im, Colicin immunity protein. Colicin immunity proteins are plasmid-encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress.	2.29694e-07
NZ_CP029129.1\|WP_108716782.1\|12255_12408_+\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	1.38179e-10
NZ_CP029129.1\|WP_012368893.1\|6453_6756_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.71059e-14
NZ_CP029129.1\|WP_036896424.1\|8542_8824_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00798589
NZ_CP029129.1\|WP_049195410.1\|7645_8299_+\|AAA-family-ATPase	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.69774e-21

>NZ_CP029129.1|WP_036896417.1|10347_11304_-|replication-initiator-protein-A
MKTLRPKKYKEEEFFIADEVEISSFRDELASMEHPFFALKGGDDKVREYRNNNISVLVRPATGIGLATVFDKDIWIYAISKLQQAIFEGKPISRTIAFTPYEFFVTTNRDKGGRSYDELKKALERLAGTRIQTNIVYSSEKQETENFGLIDKWRILEEKKGRLDIGMVEVTLPDWLYQGITKNKVLKINSDYFRIRKAIDRRIYEIARKHCGYQKSFSLSIELLHLKSGATSNKREFKRSIKKLSLVNDLPDYEVLLDAENDCVTFTNRHFDESLEKKMNQLAKNKNMIEEVVSNGKLPKKLQKKVATIADKISKEKR
>NZ_CP029129.1|WP_049195517.1|9933_10338_-|hypothetical-protein
MAKIYQFPQGKEKKEIQAKLKKSRSVKIKKDIKKSSLSHILSMLFLGIRYFLGVTLDVLLLMVVSIISVFRYLIIPLGIFALILFYYNNEKMWNVEMTVTMALMVSSLINPEVLQDIQPFQTLFGVKSPQSEAK
>NZ_CP029129.1|WP_049195411.1|9472_9838_-|DUF2726-domain-containing-protein
MSYLRQQFLTEEESKLLVILQENVKENYHVFCKVRLSEFLYSSQKMGTSEFFNEFEIINSINLPFAIYDTLENQLVAAISYINPIEKSNLLENQDIKVIHLTMLKDTLTNGELSMFYSDSV
>NZ_CP029129.1|WP_036896419.1|9184_9388_+|hypothetical-protein
MKQLTEFELEIIHAVVVLQELHDKPELSASVLKECNLSEIDCNELDDYEKDNLRIINKEYLVNLKGL
>NZ_CP029129.1|WP_036896424.1|8542_8824_+|ribbon-helix-helix-protein,-CopG-family
MKLQKPDLDLTDSSTKTKNSTTQFIKAGDKRPTTSNKLIPSTFRLPESAISILDTEAERAGQNKTAILKAAILAYSNLDENSKNLALLESFKL
>NZ_CP029129.1|WP_049195410.1|7645_8299_+|AAA-family-ATPase
MILVFASDKGGVGKTTTAINMAVMLKRKNKSVIMLKADRNRDLFVWSDIRAQAGFSAIPIHEAFGNISDEIKRLEKLCDVVVVDCAGHDSSEFRSALTVADVLLTLVKPSSSLEKNTLTNVTKTVRTAQKQHGNSDLKAHVLMTRIKSHKLQDAVSLENELKSDEIWLQPLKNRISELDIFENAVNAGVGVHEVEKASSLGVAKAQIELIAKEIGLI
>NZ_CP029129.1|WP_012368894.1|6764_7028_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MEIIPAQLAKNQFGDLLMKAQREPVQISKHGKRVAVVISPDEYDQFTQLKLQNLKSILAESIEQAERGELHHIDDVFAPLTSNEIEG
>NZ_CP029129.1|WP_012368893.1|6453_6756_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSVLFTKKAKEHIRTIRRYSLTHWGKNVAETYINCLRITIINIIEKQPSIGIDRSDDLFTGIRSFPVESHIIYYREVENGIEVLAVLHQSQDPYIHIKRD
>NZ_CP029129.1|WP_012368892.1|5794_6313_-|colicin-immunity-protein-Cui
MDNKNHPNDHLLIKWGSIFIFISAIPIFIIFYFNDIDILFAVYEKINNIPSTYSSTYPIISKLSFFYCKLSPLIVLLFFIFCYKKLTLVKPIPINKLIINVIFPCLVITIISLYVLYFYNTDISDSGWSILKTISSNKHLLFGYYIAIFLGYYVWLFLFFISFIYLPFKSIR
>NZ_CP029129.1|WP_012368891.1|4248_5715_+|putative-colicin
MSKNNHSAETDHLSVTADRPSKGDLGSGPVGKGDGGDRNIISLSDPNASFSYTTSTIEGLEGLNFTVTVHGARIINPQNGHTTNNIEVDGKGNSVDYKKNNVQNNQLELPIPYNNKLARDRDLGRLTSRIRKDYFDLKNNKARVSIYNGHYIHTVTFDDAGNVQNISEEYIEKTYNRYSKGIPNEKKDRLEEVKRFAILGYKTEPSNILDYNVKIKEYEFIFTLNKLGFIEKFSKKIIKASQYESRQLNAFYKDLNIEQDEKKENLAKLMVVNAYQSYPQNKKFIQDAEKEALMGAADIITNTGEKISKHLGEKYKTIANEIASDLRNFQGKKLRSLSDALKMMEKINRNPNIKIKQADRVVLANAVRHVDTKILSENFQRLGKSFGVLGKVLSVEKLREKAAIGFETGNWKPLMLEVEAMIISGYATGIAISIAISFISSIASFLAIGALPTTLAIIATIMLISYLASLIDDKVVDKINNLLIPEAH
>NZ_CP029129.1|WP_108716782.1|12255_12408_+|DnaJ-domain-containing-protein
MNVQEALNIFGLSGELTEQDIKTAYKKAALKYHPDRNPLGAELMKAINAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11351-11371	0	1.0
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7079-7099	0	1.0
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	43125-43145	0	1.0
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2594-2614	0	1.0
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12749-12769	0	1.0
NZ_CP029129_1	1.1\|11351\|21\|NZ_CP029129\|CRISPRCasFinder	11351-11371	21	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	157-177	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	43080-43101	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2549-2570	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12704-12725	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	112-133	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11395-11416	0	1.0
NZ_CP029129_1	1.2\|11395\|22\|NZ_CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7123-7144	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42923-42954	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2392-2423	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11542-11573	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12547-12578	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	36014-36045	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42880-42899	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2349-2368	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11597-11616	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7325-7344	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12504-12523	0	1.0
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	35971-35990	0	1.0
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7270-7301	1	0.969
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42902-42921	1	0.95
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2371-2390	1	0.95
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11575-11594	1	0.95
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7303-7322	1	0.95
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12526-12545	1	0.95
NZ_CP029129_2	2.2\|11597\|20\|NZ_CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	35993-36012	1	0.95
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP043616	Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence	9537-9568	6	0.812
NZ_CP029129_2	2.1\|11542\|32\|NZ_CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	184320-184351	9	0.719

1. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

2. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

3. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

4. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

5. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

6. spacer 1.1|11351|21|NZ_CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

7. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

8. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

9. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

10. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

11. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

12. spacer 1.2|11395|22|NZ_CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

13. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

14. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

15. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

16. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

17. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

18. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

19. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

20. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

21. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

22. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

23. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

24. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 1, identity: 0.969

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatatcaaacagc	Protospacer
********************** *********

25. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

26. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

27. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

28. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

29. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

30. spacer 2.2|11597|20|NZ_CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

31. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_CP043616 (Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

acgaaataattactgtacaaatttcaaacagc-	CRISPR spacer
accaaataatttctgtacaaattt-gattagcg	Protospacer
** ******** ************ .* .***

32. spacer 2.1|11542|32|NZ_CP029129|CRISPRCasFinder matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
tccgatcaattactttacaaaattcaaacaca	Protospacer
 * .* .******* ****** ********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029133

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection