CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029127	Klebsiella oxytoca strain AR380 plasmid unnamed1, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP029128	Klebsiella oxytoca strain AR380 chromosome, complete genome	4 crisprs	cas3,DinG,WYL,DEDDh,csa3	0	7	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1027 : 75783

Macacine_betaherpesvirus(17.65%)

integrase,tail,transposase

attL 5577:5597|attR 65767:65787

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108703702.1\|1027_1996_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	7.5e-27	33.8
WP_162556063.1\|2437_2668_+	hypothetical protein	NA	NA	NA	NA
WP_108703703.1\|2717_3752_+	biotin synthase BioB	NA	NA	NA	NA
WP_108703705.1\|4482_5593_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-47	39.3
5577:5597	attL	NA	NA	NA	NA
WP_108703707.1\|7113_7881_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.2e-28	57.1
WP_108703708.1\|8532_9285_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.1e-121	86.6
WP_108703709.1\|11318_12452_+\|tail	tail fiber domain-containing protein	A0A1Z1LZI1	Serratia_phage	9.7e-18	26.7
WP_108703710.1\|12532_14650_+	colicin-D	NA	NA	NA	NA
WP_047722708.1\|14646_14913_+	colicin-D	NA	NA	NA	NA
WP_048993616.1\|15458_15773_+	hypothetical protein	NA	NA	NA	NA
WP_108703753.1\|15832_16441_+	hypothetical protein	NA	NA	NA	NA
WP_108703711.1\|16508_17288_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	90.3
WP_108703712.1\|17432_18383_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.2e-73	55.9
WP_044348065.1\|18503_18770_-	hypothetical protein	NA	NA	NA	NA
WP_108703714.1\|19141_19390_-	hypothetical protein	NA	NA	NA	NA
WP_108703754.1\|19472_19652_-	Par-like protein	NA	NA	NA	NA
WP_058673570.1\|19771_20398_-	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	1.3e-40	44.1
WP_108703715.1\|20629_21901_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	9.2e-158	64.0
WP_108703716.1\|21900_22326_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.9e-31	54.7
WP_108703717.1\|22533_22764_+	hypothetical protein	NA	NA	NA	NA
WP_108703755.1\|23842_24562_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_108703718.1\|24940_25357_+	hypothetical protein	NA	NA	NA	NA
WP_108703719.1\|25517_26141_+	hypothetical protein	NA	NA	NA	NA
WP_108703720.1\|26146_26797_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_108703721.1\|26793_27102_+	hypothetical protein	NA	NA	NA	NA
WP_162556066.1\|27256_27757_+	DUF1669 domain-containing protein	A0A1B2LRT6	Wolbachia_phage	4.7e-17	33.8
WP_108703723.1\|27956_28676_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_108703724.1\|28756_30043_-	MFS transporter	NA	NA	NA	NA
WP_108703725.1\|30098_30866_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.4e-21	27.6
WP_108703726.1\|31203_32457_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	3.9e-44	29.7
WP_108703728.1\|32554_33196_-	recombinase family protein	NA	NA	NA	NA
WP_108703756.1\|33363_36351_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.1e-293	53.2
WP_108703729.1\|37022_38210_+	microcin B17 processing protein McbC	NA	NA	NA	NA
WP_073991198.1\|38219_38945_+	protein mcbE	NA	NA	NA	NA
WP_108703730.1\|38941_39670_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-09	24.9
WP_108703731.1\|39673_40234_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_108703757.1\|40575_41580_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_108703732.1\|41934_42195_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_015344939.1\|42428_42503_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_108703733.1\|42483_43359_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_108703735.1\|44579_45296_+	HNH endonuclease	NA	NA	NA	NA
WP_108703736.1\|45448_46078_-	LysE family translocator	NA	NA	NA	NA
WP_108703758.1\|46087_47032_-	hypothetical protein	NA	NA	NA	NA
WP_108703737.1\|48006_48711_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.0e-130	94.0
WP_108703738.1\|50708_51311_+	fimbrial protein	NA	NA	NA	NA
WP_108703739.1\|51387_52089_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_108703740.1\|52121_54791_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_108703741.1\|54885_55452_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_162556064.1\|55871_56828_+	hypothetical protein	NA	NA	NA	NA
WP_108703760.1\|58019_58127_+\|transposase	transposase	NA	NA	NA	NA
WP_108703761.1\|58637_59600_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA
WP_108703745.1\|62036_63126_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.6e-46	41.8
WP_108703746.1\|64175_64673_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_108703747.1\|64988_65648_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_108703748.1\|68074_68638_+	type 1 fimbrial protein	NA	NA	NA	NA
65767:65787	attR	NA	NA	NA	NA
WP_108703762.1\|68864_71441_+	outer membrane usher protein	NA	NA	NA	NA
WP_108703749.1\|71533_72295_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_108703750.1\|72351_72912_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_162556065.1\|73176_74067_+	hypothetical protein	NA	NA	NA	NA
WP_108703751.1\|74706_75783_-\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029128

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029128_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029128_1

1017005-1017512

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP029128_1

>merge|NZ_CP029128|1|1017005-1017512|CRISPRCasFinder,CRT,PILER-CR
TTACTGAACTGCCGGAACGGCAGTGAACCAATTCAAAAATGCCGATGCGATCGGTCATCCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTACCGAATGGGTTACTCTGGTTAACCTGCATTTCTAAGCTGCCTGTACGGCAGTGAACTACTGAACTGCTGGAAATGGTTCTCGCGTTTCTTTCTAAGCTGCCTGTACGGCAGTGAACATTTCGTTAACAGTGGCGGAAAAAAACTCACTTTTCTAAGCTGCCTGTACGGCAGTGAACGCATTACCGCACTTCATATAATTTTCGAGGAATTTCTAAGCTGCCTGTACGGCAGTGAACTATTGCCTTCCACAGCGGCGTCCCGGGCCGTTTTTCTAAGCTGCCTGTACGGCAGTGAACTTTCTTTGACTACAAACTCCCGTTCTCTCTTTTTTCTAAGCTGCCTGTACGGCAGTGAACGATCTGAAAATCTCGTTCAAGTCGCCGACTCATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP029128|1|1|1017005-1017512|CRISPRCasFinder
TTACTGAACTGCCGGAACGGCAGTGAAC	CAATTCAAAAATGCCGATGCGATCGGTCATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP029128|1|1|1017005-1017512|CRT
TTACTGAACTGCCGGAACGGCAGTGAAC	CAATTCAAAAATGCCGATGCGATCGGTCATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP029128|1|1|1017065-1017512|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029128.1\|WP_004100611.1\|1022714_1023728_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP029128.1\|WP_108704013.1\|1017712_1018147_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|311556
NZ_CP029128.1\|WP_004100620.1\|1013282_1014182_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP029128.1\|WP_024273968.1\|1010423_1012082_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP029128.1\|WP_004100621.1\|1012463_1013159_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP029128.1\|WP_108704011.1\|1003936_1006219_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP029128.1\|WP_004100628.1\|1006249_1006567_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|225038
NZ_CP029128.1\|WP_070557750.1\|1009133_1010249_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP029128.1\|WP_004111844.1\|1020172_1021174_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP029128.1\|WP_004111834.1\|1025832_1026561_+\|arginine-ABC-transporter-ATP-binding-protein-ArtP	unknown	unknown	gnl\|CDD\|182980
NZ_CP029128.1\|WP_004111843.1\|1021184_1022618_+\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP029128.1\|WP_024273963.1\|1023724_1024555_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP029128.1\|WP_004100606.1\|1024551_1024875_-\|heavy-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179490
NZ_CP029128.1\|WP_004100627.1\|1006891_1007122_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP029128.1\|WP_108704012.1\|1015988_1016957_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP029128.1\|WP_049591108.1\|1014325_1015978_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP029128.1\|WP_004111833.1\|1026580_1027312_+\|arginine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|184969
NZ_CP029128.1\|WP_004100616.1\|1018299_1020018_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP029128.1\|WP_004100604.1\|1024992_1025508_+\|lipoprotein	unknown	unknown	gnl\|CDD\|182526
NZ_CP029128.1\|WP_004111855.1\|1007190_1009137_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NZ_CP029128.1\|WP_004100611.1\|1022714_1023728_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.06704e-55
NZ_CP029128.1\|WP_108704013.1\|1017712_1018147_-\|DoxX-family-protein	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	1.15049e-11
NZ_CP029128.1\|WP_004100620.1\|1013282_1014182_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.13535e-115
NZ_CP029128.1\|WP_024273968.1\|1010423_1012082_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP029128.1\|WP_004100621.1\|1012463_1013159_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.16082e-144
NZ_CP029128.1\|WP_108704011.1\|1003936_1006219_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP029128.1\|WP_004100628.1\|1006249_1006567_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	2.44335e-47
NZ_CP029128.1\|WP_070557750.1\|1009133_1010249_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP029128.1\|WP_004111844.1\|1020172_1021174_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP029128.1\|WP_004111834.1\|1025832_1026561_+\|arginine-ABC-transporter-ATP-binding-protein-ArtP	gnl\|CDD\|182980	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional.	0
NZ_CP029128.1\|WP_004111843.1\|1021184_1022618_+\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.16362e-130
NZ_CP029128.1\|WP_024273963.1\|1023724_1024555_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	1.08202e-104
NZ_CP029128.1\|WP_004100606.1\|1024551_1024875_-\|heavy-metal-binding-domain-containing-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	6.50282e-67
NZ_CP029128.1\|WP_004100627.1\|1006891_1007122_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.34932e-46
NZ_CP029128.1\|WP_108704012.1\|1015988_1016957_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP029128.1\|WP_049591108.1\|1014325_1015978_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP029128.1\|WP_004111833.1\|1026580_1027312_+\|arginine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|184969	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein.	2.82316e-174
NZ_CP029128.1\|WP_004100616.1\|1018299_1020018_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP029128.1\|WP_004100604.1\|1024992_1025508_+\|lipoprotein	gnl\|CDD\|182526	PRK10533, PRK10533, putative lipoprotein; Provisional.	1.07215e-114
NZ_CP029128.1\|WP_004111855.1\|1007190_1009137_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0

>NZ_CP029128.1|WP_108704012.1|1015988_1016957_+|NADH-oxidoreductase
MTIPTSQCPWRMQVHHIHQETPDVWTISLLCHDYYPYRAGQYALVSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGAGSQWLTRDVKRGDYIWLSDAMGDFTCDDKADDKFLMLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPQDVIFAEEWRQYPVTLVAENNATHGFVAGRLTTELLQSVPDLASRTVMTCGPAPYMDLVEQEVKALGATRFFKEQFFTPVAVAATSGLKFTKLQPAKTFYAPVGTTLLEALESNKVPVTVACRAGVCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCQPLGDLVLA
>NZ_CP029128.1|WP_049591108.1|1014325_1015978_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIASLQGLSAWALKAREYGIIDHDVDSFAPRAFFSTLTNVNFDSPRIVGYARQAIAMREALKAQCLNIDAHATVNNPMAAVQLASDDLGDLQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVNHLEGEDFAPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLDFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAVLNEKFGLRSVTTVEEDMKQLLSA
>NZ_CP029128.1|WP_004100620.1|1013282_1014182_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIAGYLIPLHRPSALKLIARLLSWIVYVILFFMGISLAFLDNLASNLLSILHYAAVSVVIILLCNIAALMWLEQKMPWQNHHRQEKLPSRLAMALESLQLCGVVLIGFLIGLSGLPFLQHATEASEYTLIFLLFLIGIQLRNNGMTLRQIVLNRRGMMVAVVVMVSSLLGGIINAFILDLPLKTGLAMASGFGWYSLSGILLTESYGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP029128.1|WP_004100621.1|1012463_1013159_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKEVIGYIIAQVVGGIIAAAILYIVASGKAGFDAAASGFASNGYGEHSPGGFSMLSAIVIEIVLTCGFLLVIHGATDKNAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALQQLWLFWVMPIIGGILGGVLYRTLLEKRS
>NZ_CP029128.1|WP_024273968.1|1010423_1012082_-|ATP-dependent-endonuclease
MHLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVREDFWFPPGDVQGRERHLHIILTFRENEPGRHRVRRYRPLSNCWVPCDDGYQRVFYRLEGELADDDSVMTLRSFINGEGEALEVENIDELARHLVRLMPVLRLRDARFMRRIHNGTVPHSPQIEITARQLDFLSRELVHHPQNLTDGQIRQGLSAMVQLLEHYFAEQSSAQSRHRLMRRHSHDEQRSWRYLDIINRMIDKPGGRSHRVILLGLFSTLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEHVCRLVRESSRVSAWRLGPGGMNAEDSRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGVKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNDDKMLERDHLTALPAMDMEHFMYRQGFDDVYHRVAQLPMNIPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAIPTLLKKMFSRVLWLARGRAD
>NZ_CP029128.1|WP_070557750.1|1009133_1010249_-|macrolide-transporter-subunit-MacA
MKLNGKRRKIWWLLAIVVLALAIWGWRILNAPLPQYQTLVVRKGDLQQSVLATGKLDALKKVDVGAQVSGQLKTLRVEIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQLNQARAERKLSAATLARQQQLAQRQLVSRQDLDTAATDLAVKEAQIGTIEAQVKRNQATLDTAKTNLDYTKILAPMSGEVTQITTLQGQTVIAAQQAPNILTLADLSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGTLKDILPTPEKVNDAIFYYARFEVPNPQGILRLEMTAQVHIQLSEVKNVITIPLSALGEAIGDNRYHVRLLRTGEVKEREIVIGARNDTDVAVVKGLEEGDEVIIGEGAAGAAK
>NZ_CP029128.1|WP_004111855.1|1007190_1009137_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELRDIRRSYPSGDGNVEVLKGITLSIAAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVARLNGDELARLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGAERKARLARAHELLVRLGLGDRAEYQPSQLSGGQQQRVSIARALMNGGEVILADEPTGALDSRSGEEVMGILHQLKAQGHTVIIVTHDPQVAAQAERVIEIHDGEIVRNPPALSSAQGGALRQRTAAEPSAWRQFSSGFREALVMAWRAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIGTNTIDVYPGKDFGDDDPRYQQSLKYDDLLAIQKQPWVSSATPAVSKSLRLRADNIDVAASAEGVGAQYFNVYGMTFSEGNTFNELQLNSRAQVVVLDSNARRQLFPHKARVVGEVILVGNMPATVIGVADEKQSMFGSSKILRVWLPYTTMAGRVMGQSWLNSITVRVNEGYDSALAEQQLLRLLELRHGKKDVFTWNMDSILKTAERTTHTLQLFLTLVAVIALVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGVTLSLLIAFVLQLFLPGWEIGFSPLALLTAFLCSTLTGVLFGWLPARNAARLDPVDALARE
>NZ_CP029128.1|WP_004100627.1|1006891_1007122_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQGPKGNHASVIVPVEAEETETAA
>NZ_CP029128.1|WP_004100628.1|1006249_1006567_-|ATP-dependent-Clp-protease-adapter-ClpS
MSKRDWLDFDQLIEDEVKDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQGKAICGVFTAEVAETKVSMVNQYARENEHPLLCTLEKA
>NZ_CP029128.1|WP_108704011.1|1003936_1006219_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPATEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDNSGSQPGSSEEQAGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAECTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSRSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLAKSLGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSPDAMDEIKKIFTPEFRNRLDNIIWFDHLSTTVIHQVVDKFIVELQVQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVIVELDKEKNALTYAFQSAQKHKPEAAH
>NZ_CP029128.1|WP_108704013.1|1017712_1018147_-|DoxX-family-protein
MVKSLLNGVNKLLSHDDFGKLLLRLAVGGLMLFHGLHKLFDGVGGISSMLVAKGLPGFIAYGVLAGEVVAPCLLIVGILTRPAALVLAFTMVVAWLMVGTGKTFALDAVGAWAIESLVYFFVGALAIAFLGAGRYSIGGTSAWR
>NZ_CP029128.1|WP_004100616.1|1018299_1020018_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIDWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVINRGVSVVVLPGDVALKPAPESASSHWYHAPLPQVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLSALLPHLEEKTDRKFLDKALEHYRDARKGLDDLAKPSDKTLHPQYLAQRISHFADDDAIFTCDVGTPTVWAARYLQMNGKRRLIGSFNHGSMANAMPQAIGAKATAPDRQVVAMCGDGGFSMLMGDFLSLAQMKLPVKIVIFNNSVLGFVAMEMKAGGYLTDGTELHATNFARIAEACGIKGIRVEKAADVDQALQTAFSTDGPVLVDVVVASEELAMPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP029128.1|WP_004111844.1|1020172_1021174_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMREAMMAAPVGDDVYGDDPTVNELQRFAADLAGKEAAIFLPTGTQANLVALLSHCQRGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGSLPLDKVAAKIKPDDIHFAPTRLLSLENTHNGKVLPREYLKDAWEFTRQRGLGLHVDGARIFNAVVEYGCALREITRYCDSFTICLSKGLGAPVGSLLVGSEAYIRRAIRWRKMVGGGMRQAGILAAAGLYALQNNVERLKEDHDNAAWMAEQLRAAGAEVMRHDTNMLFVRVGEARAAALGEYLRERGVLINASPIVRLVTHIDVNRQQLAEVVSHWQTFLNR
>NZ_CP029128.1|WP_004111843.1|1021184_1022618_+|DUF2867-domain-containing-protein
MSQRILVLGASGYIGQHLVTRLSEQGFTVLAAARQIDRLKKQHLPGVECYSLDLNQPDALPALLAQVDTVYYLVHGMGEGGDFIRHERQVALNVRDALRKTPVNEVIFLSSLQVAEEEQSDHLRARQITGDLLRESGIPVAEVRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLYYLLQLLNHPAAEHRIFEAAGPEILSYQQQFIRFMAVSGKRRPLIPIPFPTRWISVWFLNIITSVPSTTARALIQGLKHDLIADDRALRALIPQPLIAFDEAVRRTLKEEEQLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVNTSASLAALWKVVNQIGGKEGYFFGNALWKTRGAMDLLVGHRLAKGRPENEYLQTGDAVDSWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLRDKGDHRELDVRAWWHPHGMPGLCYWLLMIPAHLFIFRGMARRIAHLAEQITIK
>NZ_CP029128.1|WP_004100611.1|1022714_1023728_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEYLRNRGISVRATGRNEAMGKLLSKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFVHISSPSLYFDYHHHRDVQEDFRPQRFANEFARSKAASEDVIHLLAQANPNTRFTILRPQSLFGPHDKVFIPRLAQMMQHYGSVLLPRGGSALVDMTYYENAVHAMWLASQPQCDLLPSARAYNITNGEPQTLHSIVLKLIDELGIKCRIRSVPYPMLDIIARSMERFGNKSAKEPAFTHYGVSKLNFDFTLDISRAQQELGYQPVVNMDEGIIRTAAWLKDHGKLHY
>NZ_CP029128.1|WP_024273963.1|1023724_1024555_-|N-acetylmuramoyl-L-alanine-amidase
MKRCRAGVLLALLLAGCASEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADDFDVSLATLTDNQVSSHYLIPEKPPLHGGKPRIWQLVPEEDLAWHAGVSFWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFNPAQIDALIPLAKDIIARYQILPQNVVAHADIAPQRKDDPGPLFPWHRLAEQGIGAWPDARRVAFYLQGRPSYEPVDTAELLDVLARYGYQVTPEMTPAQQKRVIMAFQMHFRPARWDGVADAQTLAMAEALLEKYGRG
>NZ_CP029128.1|WP_004100606.1|1024551_1024875_-|heavy-metal-binding-domain-containing-protein
MQFSTTPTLEGQPIIEYCGVVTGEAILGANVFRDFFASIRDIVGGRSGAYEKELRKAREIAFEELSEQAKALGANAVVGIDIDYETVGKDSSMLMVSVSGTAVKTRR
>NZ_CP029128.1|WP_004100604.1|1024992_1025508_+|lipoprotein
MRYKVLALVLPCALALSACTTVTPAYKDNGTRSGPCIEGGPDDVAQKFYDYQLQNRNSDLTALRPYLSDGLAKLLNDARQDPSNNALLQSNLFSSSSTPADSAEVASASTIPNRDARNIPLRVELKQGTQSWKDEVLMIQEGQCWAVDDVRYLGNNGHAPAGTLRQSLEKR
>NZ_CP029128.1|WP_004111834.1|1025832_1026561_+|arginine-ABC-transporter-ATP-binding-protein-ArtP
MSIKLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLHIAGNHFDFTKAPSDKAIRELRQNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAGCFAHPQTDAFKNYLSH
>NZ_CP029128.1|WP_004111833.1|1026580_1027312_+|arginine-ABC-transporter-substrate-binding-protein
MKKVLIAALLAGMSLSATAAQTIRFATEASYPPFESIDANNKIVGFDVDLANALCKEIDATCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTTPYYENSALFVGQQGKFTSIDQLKGKKVGVQNGTTHQKFITDKHPEITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEWLKSNPKLGAVGDKVTDKDYFGTGLGIALRQGNTELQQKFNAALEKVKSDGTYQSIYNKWFQK

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Crispr_ID: NZ_CP029128_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029128_2

1067416-1067552

Orphan

Consensus_repeat	Method
ATTCGGCTTGAGAGCCGTTTCCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029128_2

>merge|NZ_CP029128|2|1067416-1067552|CRISPRCasFinder
ATTCGGCTTGAGAGCCGTTTCCAGGATTCGGCTCTTGGGCCGTTTCCATTCGGCTCTTGGGACGAATGCATTCGGCTTGAGAGCCGTTTCCATTACTTTCAACAACTTGCTTTGATTCGGCTCTTAAGCCGTTTCCA

>NZ_CP029128|2|2|1067416-1067552|CRISPRCasFinder
ATTCGGCTTGAGAGCCGTTTCCA	GGATTCGGCTCTTGGGCCGTTTCCATTCGGCTCTTGGGACGAATGC
ATTCGGCTTGAGAGCCGTTTCCA	TTACTTTCAACAACTTGCTTTG
ATTCGGCTCTTAAGCCGTTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029128.1\|WP_064364907.1\|1066591_1066885_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704024.1\|1059394_1060594_-\|DUF2213-domain-containing-protein	unknown	unknown	gnl\|CDD\|370768
NZ_CP029128.1\|WP_004111711.1\|1068238_1068664_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|368819
NZ_CP029128.1\|WP_004111685.1\|1072187_1072403_+\|DUF1233-family-excisionase	unknown	unknown	gnl\|CDD\|369087
NZ_CP029128.1\|WP_108704030.1\|1068957_1069374_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182039
NZ_CP029128.1\|WP_108704025.1\|1061459_1062911_-\|DUF1073-domain-containing-protein	unknown	unknown	gnl\|CDD\|368870
NZ_CP029128.1\|WP_108704027.1\|1064781_1065051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108705026.1\|1060855_1061404_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309383
NZ_CP029128.1\|WP_108704031.1\|1069891_1070185_+\|host-cell-division-inhibitory-peptide-Kil	unknown	unknown	gnl\|CDD\|310716
NZ_CP029128.1\|WP_071993411.1\|1068647_1068875_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|137503
NZ_CP029128.1\|WP_108704023.1\|1058888_1059383_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_162556087.1\|1063071_1063299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704033.1\|1071390_1072095_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368792
NZ_CP029128.1\|WP_108704028.1\|1065058_1065685_-\|glycoside-hydrolase-family-19-protein	unknown	unknown	gnl\|CDD\|225720
NZ_CP029128.1\|WP_128334537.1\|1070250_1070484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_064364905.1\|1066382_1066595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704034.1\|1072402_1073689_+\|DUF3596-domain-containing-protein	unknown	unknown	gnl\|CDD\|271189
NZ_CP029128.1\|WP_108705027.1\|1065684_1065831_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|368449
NZ_CP029128.1\|WP_004111712.1\|1067970_1068225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704032.1\|1070707_1071394_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119344

Protein	Function_ID	Function_description	E-value
NZ_CP029128.1\|WP_108704024.1\|1059394_1060594_-\|DUF2213-domain-containing-protein	gnl\|CDD\|370768	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213). Members of this family of bacterial proteins comprise various hypothetical and phage-related proteins. The exact function of these proteins has not, as yet, been determined.	1.60313e-41
NZ_CP029128.1\|WP_004111711.1\|1068238_1068664_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	1.89832e-09
NZ_CP029128.1\|WP_108705026.1\|1060855_1061404_-\|hypothetical-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	1.54443e-14
NZ_CP029128.1\|WP_108704025.1\|1061459_1062911_-\|DUF1073-domain-containing-protein	gnl\|CDD\|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	5.20505e-128
NZ_CP029128.1\|WP_108704030.1\|1068957_1069374_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	3.34321e-65
NZ_CP029128.1\|WP_108704031.1\|1069891_1070185_+\|host-cell-division-inhibitory-peptide-Kil	gnl\|CDD\|310716	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein. This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene.	0.000921422
NZ_CP029128.1\|WP_071993411.1\|1068647_1068875_-\|transcriptional-regulator	gnl\|CDD\|137503	PRK09744, PRK09744, DNA-binding transcriptional regulator DicC; Provisional.	2.03268e-33
NZ_CP029128.1\|WP_108704033.1\|1071390_1072095_+\|hypothetical-protein	gnl\|CDD\|368792	pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid.	0.00879321
NZ_CP029128.1\|WP_108704028.1\|1065058_1065685_-\|glycoside-hydrolase-family-19-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	5.08705e-73
NZ_CP029128.1\|WP_004111685.1\|1072187_1072403_+\|DUF1233-family-excisionase	gnl\|CDD\|369087	pfam06806, DUF1233, Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	1.18457e-11
NZ_CP029128.1\|WP_108704034.1\|1072402_1073689_+\|DUF3596-domain-containing-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.47719e-32
NZ_CP029128.1\|WP_108705027.1\|1065684_1065831_-\|phage-holin-family-protein	gnl\|CDD\|368449	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	4.68425e-05
NZ_CP029128.1\|WP_108704032.1\|1070707_1071394_+\|hypothetical-protein	gnl\|CDD\|119344	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	3.28169e-05

>NZ_CP029128.1|WP_064364907.1|1066591_1066885_-|hypothetical-protein
MKTTKSKKTQYSGEITMIEFLKANPDLTTREIAAALGRGMSSVGNQLRQLHGTGQITQSGMRNGAAMWCFNDMPFGCANRLRAKFENLLRECRGVAQ
>NZ_CP029128.1|WP_064364905.1|1066382_1066595_-|hypothetical-protein
MKLQQCPDCGALPEYHWKDYTFGSCSGALKCPFDHYRVQQSYWAGGKDKARRKLEEKWAEAVNKNEVKNG
>NZ_CP029128.1|WP_108705027.1|1065684_1065831_-|phage-holin-family-protein
MYSSVPLAYLCGIYPYSTWPTIGANIMILVVLLSVRGNVARLVDVLRH
>NZ_CP029128.1|WP_108704028.1|1065058_1065685_-|glycoside-hydrolase-family-19-protein
MNQSQFQKAAGISAGLAARWFLHIDAAMKEFGITAPLDQAMFIAQCGHESTSFTQLVESFNYSVAGLAGFVKAKRITQDQANSLGRKSSEKALPLERQRAIANLVYSNRYGNKSAGDGWKYRGRGLKQITFLDNYLRCGTALKLDLVSNPELLEKDINAARSAAWFYTSSGCLKYPGDLIHVTQIINGGQNGIDDRRARFLKAKSVLV
>NZ_CP029128.1|WP_108704027.1|1064781_1065051_-|hypothetical-protein
MGIEMIIGLATALLAIVAGAFGLGHSRGTSKAEAKAEQQRTEENAAANVAVAERRAQATKEASDVQQTVSHMPDDDVDRELRENFTRKT
>NZ_CP029128.1|WP_162556087.1|1063071_1063299_+|hypothetical-protein
MNEQELLTELLRMHEADESLSKEFAAQNYEGLKRLWEQGLSCYRVTKMVTGNIQLRRVHLGVLSPLGLEKARAIN
>NZ_CP029128.1|WP_108704025.1|1061459_1062911_-|DUF1073-domain-containing-protein
MAKKTGRVATADSYDNFVARVGMQQPNQHAASTYRANYTSRNRLLIEWAYRSSWIIGAAVDSKADDMTKKGVRITSEIDPKRRGILESRFDELQLWDCINETLKWSRLYGGAVALILIEGQAPLTPLVLDKVGKGSFKGLAVLDRWMINPQLTRRIKALGPNLGKPEFYDIVTTAQGLPAWTVHHSRLIRMDGVKLPYQQKITENEWGMSIVERIFDRLTSYDSTSVGAAQLAYKAHLRTAKIKKLREIIAVGGKPFEALIKNMEMVRQFQTNEGMSLFDSEDEFETHSYSFAGLSDLLGEFKEDIAGAVGIPLVRLFRQSPKGFSTGDADLANYYDDVGTLQERDLRPHIRLLFDVLHRSEFGEPLPEDFTFEFNPLWQMSDTDRSTVATNTTTALATAVRELGMSPAAALTDLREMSDVTGVGASISDEDIANAAKEWEEAESETEPPPTIGASVSQKPVGDSRPDKSNRHGLLRWFTGKR
>NZ_CP029128.1|WP_108705026.1|1060855_1061404_-|hypothetical-protein
MVGRKMFAQVEKEEWNQWRSVSEEISAGLRDVVGNTPVGMVAQDVVYRQIQLMKSLPIEAAGRVKDIQQRAIQAVINGERPDQLYEMIMQSGDVAASRARMIARTEIGRATGALTQARALAVGSEGYWWRIEGAGTRPSHRKMKDKFVRWDNPPTLDGMTGHAGCLPNCKCWSEVQIPEPRK
>NZ_CP029128.1|WP_108704024.1|1059394_1060594_-|DUF2213-domain-containing-protein
MKYFFKTRLGNTRFQLADGSVLFKDVPIGRTGEQEYDKTERPELTPDARGKIIVRRTPEEVFSERSMASFEGMAVTIGHPRDFNGDIIFVAPDNWRLLAHGHIQNVRRGEGDKSDLLLADVIVKSPEGLQAIDDGDDEVSCGYDADYEQISPGLAIQSAITGNHMALVPNGRAGFRCKIGDAMPSTTKNWFTRLLKARKTNDAAEMANLVDNAPESITGDDDVSSSITPGGVVINLSPQSPLPGPALPGTGDAEEDIPAWGKALIEAVAKLAPASATGDADDDDEEKDEKEGAVTGDAAYRADLIQPGIQLPSTAKPTAFKRSVLATADQAMVRSIVGDADISKLKKATVDMAFNAVSEVAKNRNTAAKTADGFRSINSNTTKSIAEINAAAKELWAKR
>NZ_CP029128.1|WP_108704023.1|1058888_1059383_-|hypothetical-protein
MDNTILYRMSSGIAGAISRPQDLTVEPQTLDSAKAFAAYGLAGKFSAGKFVPIEAADTAAVVVGIYVRPYPTASQPDKVRQIGSGYNFAGDCMKRGYVTVNLGADASAVALGGEVYMRVATPSDTSPLGAFLAAADGENTVQLTNAYFNGPGDANGNIELAFNI
>NZ_CP029128.1|WP_004111712.1|1067970_1068225_-|hypothetical-protein
MRNQSAAELIARLKRAYPAYEPSEGDCAGTGIPKAGSRFQHRHKGHMVTVLTATEKDVSYRKACGAIGWVGLREFLRLHNEVSE
>NZ_CP029128.1|WP_004111711.1|1068238_1068664_-|Rha-family-transcriptional-regulator
MKIRHERIREAMNAWALYPGGRKTPVSAIVDAYFSMGMTTPELYDDSHPDALSRNIQKIYRWIESDSPASIEKIAQLLPAIERAMPPLLLARVRSYYSETFRELLHRKQRVDDEMEALFGAMIAISDRIADGGSSGNTLIH
>NZ_CP029128.1|WP_071993411.1|1068647_1068875_-|transcriptional-regulator
MYKSDALSFFGTKTRLAKAAGVRLSSIYKWGELVPEGRAARLQAASEGQLHYDKDVYDQYRNEKRSGEVNHENQA
>NZ_CP029128.1|WP_108704030.1|1068957_1069374_+|helix-turn-helix-domain-containing-protein
MEMKNLSIGERIRARRKDLNHTQRTLAKALKISHVSVSQWERDDSEPTGKNLFALSKILKCSPTWILFGDDEQAPDSLPAEESPLDDRHRELIELFDALPESEQDSQLEIMRARVENFNRLFEEMLETRKRKNKPKSN
>NZ_CP029128.1|WP_108704031.1|1069891_1070185_+|host-cell-division-inhibitory-peptide-Kil
MANFLQSNPAFKAAQSKLAIAQFIGNSGMWSDAMASIKDIHEAAKHEEDRMFCGRTDALSGLNFRDVVLNYDLYGDLISVDADLLTGQYKVNTEVSF
>NZ_CP029128.1|WP_128334537.1|1070250_1070484_+|hypothetical-protein
METEKLHCYSCGGSFTREELQYRPSGRGAYRKVAYYCPICNEKEKKKDQLKATQSLVRKSLPSRPASFQLRPAAWNK
>NZ_CP029128.1|WP_108704032.1|1070707_1071394_+|hypothetical-protein
MKERGMIFNGEMVRAILDGRKTQTRRIMKVQPEHSELGLRRVVESKNGIDDGKYFWSQSDATGLKSRSKPFACPFGTVGDRIWVREAFRVHSRATDVATLVYKASERNSWTEQTHRVPVAVCNKPATPEKWTPSLHMPRWASRILLEITDVRVERLNAISEEDARAEGIIDGGCLNCGEPEPCGCANPEPDATDAFAYLWQSIYGQENWNANPWVWVIEFKRVKGGAA
>NZ_CP029128.1|WP_108704033.1|1071390_1072095_+|hypothetical-protein
MSFFEIDSRFLIDTALHRLEIIRDDGLYRHLRMQQPVNSCYYYDVITWPGYLTVTGDMGTWTFSRIADMFDFFGAWEGGINTHYWSEKLEAGAGCSARDMLAKEYDHDAFCKSLKESLSDYLDDDESAEPEEHEDWDDDDDTPDSDKAVVREIVRDLCRADFNNEWEAYQAVYDADWPEGWSAWDVCDGLTFKTYTSHFRWILFAITWAISKYHNAKIVDKAMATFLAVKGSIA
>NZ_CP029128.1|WP_004111685.1|1072187_1072403_+|DUF1233-family-excisionase
MADITQEDEWVMEKGIVAKMYMTPRQIKSYREGRWIEGIHYKKHPPDPKASEGRVTLLYNYTRINRLVGET
>NZ_CP029128.1|WP_108704034.1|1072402_1073689_+|DUF3596-domain-containing-protein
MNMPAGVELHGKGIRISFLYRGIRCREVLRGWTVSNSNIKKAGNLRALIISEIQQGKFDYAEHFPESKALKKFTTTQKIKTFGELCKVYLNAKKLEVSAASYRGAESRIATLCAIVGSNTHIADIQHTDLLNYRNALLTGNTFSDHAPWLKRKGRAVSTVNGLMNNLTALLKLANLSGFIEHTPHEGIKMLKRSRRDPDPLLQSEYEGFIKALSPRYALLWTTAIFTGLRHGELTALAWEDVDLDKGELHVRRNQTNEGLFVPPKTEAGIRTVTLLEPALNALREQFKLTGALSKTEITFHHREHGLTEQQKLRFVFVPPKNWRGETKYYGSQSLGYSWEAGLKKAGIRSRRPYQSRHTFACWLLTAGANPSFIAGQMGHENAKMVYEIYSKWIGEMDRNQVEMLNNSFSDVVSQGCPKRKVVGIKNV

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Crispr_ID: NZ_CP029128_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029128_3

5041155-5041242

Orphan

I-E

Consensus_repeat	Method
AGAGAGTTCCCCGCGCGAGCGGGGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029128_3

>merge|NZ_CP029128|3|5041155-5041242|CRISPRCasFinder
AGAGAGTTCCCCGCGCGAGCGGGGATAAACCGGGCGCGCCAGGCCCTGGAAAATCTCAGACAGAGAGTTCCCCGCGCGAGCGGGGATA

>NZ_CP029128|3|3|5041155-5041242|CRISPRCasFinder
AGAGAGTTCCCCGCGCGAGCGGGGATA	AACCGGGCGCGCCAGGCCCTGGAAAATCTCAGAC
AGAGAGTTCCCCGCGCGAGCGGGGATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029128.1\|WP_004103788.1\|5048100_5049042_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|367868
NZ_CP029128.1\|WP_004103811.1\|5033346_5034456_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP029128.1\|WP_049128618.1\|5049248_5050616_+\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP029128.1\|WP_004103805.1\|5035683_5036604_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP029128.1\|WP_049102310.1\|5044429_5046037_-\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212663
NZ_CP029128.1\|WP_016809241.1\|5042242_5043043_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP029128.1\|WP_004103807.1\|5035196_5035514_-\|nickel/cobalt-homeostasis-protein-RcnB	unknown	unknown	gnl\|CDD\|227742
NZ_CP029128.1\|WP_016809243.1\|5031161_5033195_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP029128.1\|WP_162556179.1\|5040056_5040983_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP029128.1\|WP_108704755.1\|5041472_5042246_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_CP029128.1\|WP_108704752.1\|5027287_5031025_-\|WGR-and-DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP029128.1\|WP_004114038.1\|5046067_5046817_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP029128.1\|WP_108704754.1\|5038124_5039936_-\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP029128.1\|WP_004114049.1\|5034807_5035137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704758.1\|5052158_5053436_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|162096
NZ_CP029128.1\|WP_108704757.1\|5050625_5052089_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP029128.1\|WP_108704756.1\|5047076_5048078_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380498
NZ_CP029128.1\|WP_108704753.1\|5036778_5038122_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP029128.1\|WP_004103793.1\|5043191_5044244_+\|class-I-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236431
NZ_CP029128.1\|WP_108704751.1\|5023516_5027275_-\|WGR-and-DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270

Protein	Function_ID	Function_description	E-value
NZ_CP029128.1\|WP_004103788.1\|5048100_5049042_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	1.24536e-86
NZ_CP029128.1\|WP_004103811.1\|5033346_5034456_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP029128.1\|WP_049128618.1\|5049248_5050616_+\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	3.05617e-135
NZ_CP029128.1\|WP_004103805.1\|5035683_5036604_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.3122e-64
NZ_CP029128.1\|WP_049102310.1\|5044429_5046037_-\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|212663	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP029128.1\|WP_016809241.1\|5042242_5043043_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.64176e-160
NZ_CP029128.1\|WP_004103807.1\|5035196_5035514_-\|nickel/cobalt-homeostasis-protein-RcnB	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	2.99189e-21
NZ_CP029128.1\|WP_016809243.1\|5031161_5033195_-\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP029128.1\|WP_162556179.1\|5040056_5040983_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.72465e-38
NZ_CP029128.1\|WP_108704755.1\|5041472_5042246_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	3.24588e-123
NZ_CP029128.1\|WP_108704752.1\|5027287_5031025_-\|WGR-and-DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	8.27693e-60
NZ_CP029128.1\|WP_004114038.1\|5046067_5046817_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.28131e-76
NZ_CP029128.1\|WP_108704754.1\|5038124_5039936_-\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NZ_CP029128.1\|WP_108704756.1\|5047076_5048078_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380498	cd06274, PBP1_FruR, ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type 1 periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.38466e-106
NZ_CP029128.1\|WP_108704758.1\|5052158_5053436_+\|MFS-transporter	gnl\|CDD\|162096	TIGR00897, Alpha-ketoglutarate_permease, polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP029128.1\|WP_108704757.1\|5050625_5052089_+\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP029128.1\|WP_108704753.1\|5036778_5038122_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.16844e-115
NZ_CP029128.1\|WP_004103793.1\|5043191_5044244_+\|class-I-fructose-bisphosphate-aldolase	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	0
NZ_CP029128.1\|WP_108704751.1\|5023516_5027275_-\|WGR-and-DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	1.48306e-58

>NZ_CP029128.1|WP_162556179.1|5040056_5040983_+|LysR-family-transcriptional-regulator
MMTEPWQRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTELGAAILPHARRVLSVAQLAFQDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRVEFHDQTNDALFCELQSGKIDFAVGAIDSSLPPELQVYPLREDPFVAVLHGGDPLAGQPHLPWKLLAGRDIAVFSKGNIQRLVGALAESHRLTLNTRYQVDYIETLYGLVRSRLAVAILPELYTTHLQDPALKVAQLQQPALTRTVALMRGPQPLPPLIEECFALLLSSLREVNL
>NZ_CP029128.1|WP_108704754.1|5038124_5039936_-|adenine-deaminase
MSSSAETRRRAVQAARGESPFDLLLTDAQIVDMATGEIREADVGIVGETIASVHPRGSRSDALERRSLAGCFLSPGLMDTHVHLESSHLPPERYAEIVLAQGTTAVFWDPHELANVLGVEGVRYAVAASRHLPLQVMVAAPSSVPSTPGLEMSGADFAGAEMETMLAWPEVCGVAEVMDMHGVLHDSERMQEIVQAGLNSGKLIEGHARGLSGADLQAYLAAGVTSDHELTSADDALEKLRAGLTIEIRGSHPYLLPDIVNALKTLPHLSSQITVCTDDVPPDMLLEKGGIIALLNLLIEHGLPATDVLRFATLNAAIRLQRNDLGLIAAGRRADLVVFDSLSRLNAQEVYVAGKLIARDGALLQPIPSAAGVTPPRDTLQMPPLSPDDFILRVGAIRHGVARLRHIRGARFTQWGEVEVQVRDGRVQIPEGFSLIWVKHRHGRHQATPQIALLEGWGELRGAIATSYSHDSHNLVVLGRDADEMALAANRLIESGGGMALSQQGKILAHVAMPIAGMLSDLPAPELARQFRQLRDLSAEVADWEPPYRVFKAIEGTCLACNAGPHLTDLGLTDGSTRQIVEPLIDCREIPEHTEHNNKHQGA
>NZ_CP029128.1|WP_108704753.1|5036778_5038122_-|NCS2-family-permease
MADNTLNSSAQGSWLERRFALYSRGSTLRTECLAGITGFLAAAYLLVVIPGLLAVGGMDKGAATTGTILVFVGGTLLMAFYANLPFIVGPGIGGSVLVGVTLAGSEGIGWQIGLGIACWSGILFFLLTKFGLREVVTRSVPQSIKLGLTASIGLFVAVLGFRNAGLVLANAKTNALMLGDFLSPGALVALCGLFLAIALQARKIPGSILWAILFATLVGIPMGVTRLPSSFIDMPHSLTPVLGQIDMLGALNIAFLPFLFVFFASEFFSTMGTTLAVGGEAGLLDEEGNMPHINRPFMVDSIAAAIGPWLGIPAATALIESSAAAEAGGKTGLTALSAAVMFLLMLLFTPVALMIPKEATAPALILIGLNMFSGLRKVDLANFTDGLPVLMMVMITLIANSFGTGIAGGLLFYVVIKTIAGKWREIPIGLWILAIPLVYYFATLVKH
>NZ_CP029128.1|WP_004103805.1|5035683_5036604_+|LysR-family-transcriptional-regulator
MLRLEDLALFVRAAALSSFSDAAREAGLQPAQVSAAIKRLETTLNIRLFARSTRSLRLTPEGEAWLPYATQMLDTLHAGLQKIRTPDDEVRGTLQIAVPSDLGRNLLLRVFRGFRQRHPALRLRILFSDHRTDVFKDPVDVAFRYGDNDDASFISLPVAPDNRRVLVASPGWIAENGEPQTLEELARHNALTYVLRGRAFDRWPLSREGKVHHVQVSGTIVSDDAEVIRRLAIAGEGIAYKSELDVGDDIRAGRLQVLLPHYQGDVVPLNMICPHRKQLSPAVRLLYEAVKEACEAVNSSALSAGR
>NZ_CP029128.1|WP_004103807.1|5035196_5035514_-|nickel/cobalt-homeostasis-protein-RcnB
MRKTKMMLLGVLLACTSGAWAATGDGIQKYELDGVTADFKQFHIGDTVPPLYLTPEYNIKQWQQRNLPAPDAGTRWTYMGGSYVLITETEGKILKIYDGEIFYHR
>NZ_CP029128.1|WP_004114049.1|5034807_5035137_+|hypothetical-protein
MNNIALIVKLRELLVIFMHSRTLPEKAADALRYCQENIPLADLPIGAYGEYCEIYEQIVFLSDDKSRTAPDDLLRSGGDLILSILMLYEQVAAYIAVEEFMHKQNRFNE
>NZ_CP029128.1|WP_004103811.1|5033346_5034456_+|iron-sulfur-cluster-carrier-protein-ApbC
MSSQSQAKSPERLRAMVAGTLANFQHPTLKHNLTTLKALHHVAWLDETVHIEIQMPFVWNSAFEALKEQCSAELLRITGAKAIDWKLTHSIATLQRVKNQPGINGVKNIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMKFGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQLPLHITLREDLDKGTPTVVARPESEFTETYRQLADRVAAQLYWQGEVIPGEIAFRAV
>NZ_CP029128.1|WP_016809243.1|5031161_5033195_-|methionine--tRNA-ligase
MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRESEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDAASFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGMLSAELADPALYKTFTDAAASIGEAWDSREFGKAIREIMALADVANRYVDEQAPWVVAKQEGRDADLQAICTMGLNMFRVLMTWLKPVLPQLAARAEAFLNSELSWEAIQQPLLGHKVNAFKALYNRIEMKQVEALVEASKEEVKALSAPVTGPLADDPIQDTITFDDFAKVDMRIALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQALIGRLTVMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDSGAQPGQQVK
>NZ_CP029128.1|WP_108704752.1|5027287_5031025_-|WGR-and-DUF4132-domain-containing-protein
MKSFIYQDEKSHKFWAVKQQDNELHLSWGKVGTSGQSQIKTFADSATAAKAKQKLIGEKTRKGYAENTAAEKSPPQAVASQSNNRPWLADDAHIPLTEEIGWFAFPHRNRSRPFNTTPDGNQIWQRITRNDKAEFRPSDYHFTSPAWEQAYAELHQRIKHNQSTGSLLSEAALLGKMGYYSGDLIDLFVTQYGLETTVEIACHTLQVACKYDDDLKKIVVCSDLPVNKTEYLPDWLPRLCHHLSLAPEEEWLRCVKKLIAAIPELSPAMQPFVALMLPERPDIANEIALRFAAEEIPAMAWLKMVVDAPSALITLEKYPLPPLYSHFLPYVATLIANQGMIGVSQLVNDLDEKEASTQLPELEATDYFTKWLAKTNHPDALKILILGAGNKNKRLGYLSKASQKYPHAAIAAYASLLTSYEDPIWRKALTVLISAEPARVEQVLPWIDAHAAETLTATRPHSDSSAEYASPETLPEILVSPPWLKQNQKSTSPVFKLSILPVTSTLSLTPAITEELTGYDYSDYHCQFSYADLPPFESYHWEKVTEPFTPEQNFLWRLGFEKWQQLTPGTSQKVPIPQSAVTALQCADYATLINEFHQYTGKQYSQWKLYLLAWMPREQALALLDALADEPHKGEEGILPIFGIDALPIFVRYLKHDRQSLWPFTPYCGTTDLALPMAQNFSRKKTLREDARSWLLEYPEHAIAGLLPAALGKACKDRDDAQQALRLLAENNHRSLITQIAQRYQQPEIIAALGAFLDAGDFHDFPTKIQPLPEFYQFALWRRPQLKSSGLPLPDNAMRYLGDMLNFPREVKLYTGLNTVKSICTPTSLANFAWDLFNAWIEAGGPSKANWAFTTLAFFGNDDTARALTPLIRAWPGESQHQRAALGLDILAEIGSDIALMLLNGIAKKIKFAALQENAQNKIKQIAEQRELTIAELEDRLAPDLGLDDNGTLVLDFGPRRFTVSFDEALKPFVRDESGRRLKDLPKPNKSDDETLAAAAVNRYKSLKKDARTVATQQIMRLETAMCLRRRWTAEQFRLFLVDHPLVRHLTRRLIWGVYSQENVLLACFRVAEDNSYSDAEDNLFSLPEGQIGLPHVLEISAEDAAAFGQLYADYELLPPFRQLDRNHYRLTESENWATELTRWRGRQSQAGRIVGLERKGWQRIEDGGSICGMYKPAASGDIVLEVEPFSLLYGETGYDELIPLDNVKIVPAGDIYFGKPAFAFSTLDAIAASELINDIESLFD
>NZ_CP029128.1|WP_108704751.1|5023516_5027275_-|WGR-and-DUF4132-domain-containing-protein
MKTFIYHDDKSHKFWAIEQQDNELHLSWGKVGTSGQKQIKTFADAAAASKAGQKLINEKAKKGYVENSAAEASMPAPQQTAASAGSPPWLKDDEPIILDPDYETNAYSNRRFTDEPLKPVNEDCTLWEMLKESEHWTPFFLTCLQHFDASACRREWQQALQEAMRRIKQQQSEGSLLSDTILTLARFVLHYPIRIDVWLDGIVQQRGVEYAVDLVIALQQVQMTDQTNSDPVTNKAIEDGYERLLMILRNGQSAQTSPLFAITLSHNITDLRFEHGFSKIDLHLRKHLSQADATTWQRCADKLIAALPSIAPRRRPLVAFLLPEKPEIANRLALELAPDNDFPELEWLNIVATDPQAVQQLARFRQLNLFTHYRTSERCIETLLREQSLAGLSRLTPLIHEYRIKRALVEVNHPQAMTLLMMDKNASDADHLDSFAKKHPEAALYALTQGLVNGKNAIHLRLLEQIVLGNPQALESAGPWLTAEQQQLLFNHFPQLVATEEIASPDDQPPVLRSPPWLAKKKKTAAVALTLQVLPLESMGPEPEPLQEEEVPTTAEVLRYLGFESFYFDRDNPAPERFDCKWGVSKTAISLLEKEDYESLLNTRQKYDYESYITLHMSILARLPEEKALSIWNAMTHLHLTGIDEVVHRFGLPTLPGLLRYARIAPKEAVPLAAMFAASEAAPLMARAFCQLKSLRDIAERWLLTYPEHAITGLLPAALGKSSKEQGDARMTLRFLVSSGHLPLMEQVARRYDQPEVMTALGEMLAADPLDNYPLKIAKLPEWCTPEVWHRPILHNGKALSDDAIRHLCTMLAFPREETLYPGIVQVQEVCTPRSLADFAWDLFQSWEIVSGSAKDNWGFTALGIFGNDDTVRRLTPLIRAWPGESQHKRATVGLDILAAIDSDIALMQLNGIALKIKFKALQEAAREKIKQIADKRELTIAELEDRLAPDLGLDDSGTLTLDFGPRRFTLGFDEALKPFVRDESGRRLKDLPKPGKSDDEPRAAEAVSRYRQLKKDVRTVASQQIMRLESAMCLRRRWTAEQFRLFLVDHPLVRHLTRRLVWGVYSQENVLLACFRVAEDNSYSDAQDNPICLPEGQIGLPHVLEIAAEDAAAFGQLFADYELLPPFRQLDRNAYRFSQAESETFDLQRWTGRKALSGRVVGLVSKGWQRGEVRDAGGVYTFYKPVDGGYVELEVFPGFTVGLSVDMVSKTQGISHIRLYKAGQRKMIYPFSSLDKIAASELINDIESLFD
>NZ_CP029128.1|WP_108704755.1|5041472_5042246_+|hydroxyethylthiazole-kinase
MSDLLNPAHIAHLRHLFHRHSPLVHCMTNDVVQTFTANVLLAIGASPAMVIDPDEASQFAAIADALLINVGTLTVERAEAMRAAARSATQAGKPWTLDPVAVGALTLRTEFCRELLALQPAAVRGNASEIMALAGMTGGGRGVDTTDTAAAALPAAQALARQLNTVVAVTGEVDYVTDGQRIRMVTGGDPLMTRVVGTGCALSAVVAAAAAMPGDRLENVAAACGLMKLAGGKAAQQGGPGSFTPAFLDALYAGGDL
>NZ_CP029128.1|WP_016809241.1|5042242_5043043_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTLGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLARYQIKNVVLDTVMLAKSGDPLLSASAVETLRQRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRALLGMGCGAVLMKGGHLDDAESPDWLFTREEERRFTAPRVQTKNTHGTGCTLSAALAALRPRYEDWGRTVAEAKGWLSAALAQADSLEVGHGIGPVHHFHAWW
>NZ_CP029128.1|WP_004103793.1|5043191_5044244_+|class-I-fructose-bisphosphate-aldolase
MTDITQLLGKDADTLLQHRCMTIPADQLYLPGADYVDRVMVDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMGAVAVGATIYFGSEQSRRQIEEISAAFERAHELGLVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDGKVTIA
>NZ_CP029128.1|WP_049102310.1|5044429_5046037_-|FGGY-family-carbohydrate-kinase
MQSDTQHIIGVDVGSGSVRAGVFDLRGELLAHATREITLFRSAGSVVEQSSREIWQAVCYCIKTAVASAGVAPSSIAGIGFDATCSLVVIGDNDVPLAVGPSEDADRNIIVWMDHRATGQAEKINATGHAVLQYVGGKISPEMETPKILWLKENRPHIYQQARHFFDLADYLTWRSTGDLARSVCTVTCKWTYLAHEQRWDASYFRQIGLEELADEDFVRIGQRIVDPGTPCGDGLCATAAEEMGLPIGTPVAVGMIDAHAGGIGTVGVLNGAVNNMAYVFGTSSCTMTTTQEAVFVPGVWGPYYSAMVPGFWLSEGGQSAAGAAIDQLLSFHPAAAEAKSLAKARGVPLPVYLADSVLAKVDNPSAAVKLADGLHVVPEFLGNRAPLADPQAKAIIAGLGMERDLDNLMALYVAGLCGIGYGLRQIIDAQKACGIRSENIVISGGAGQHPLVRQLLADACGVSVVSTESSEPVLLGSAILGAVAGHIAPSLPEAMKQFTRVDKTYRCVEQFSADHQRRYEAYKMLQHTARLIRE
>NZ_CP029128.1|WP_004114038.1|5046067_5046817_-|SDR-family-oxidoreductase
MNHSVSSMNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFALQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIGGPVAEGDPDVWDRVLHLNTNAAFRCVRSVLPHLIAQKSGDIIFTSSIAGVVPVIWEPIYTASKFAVQAFVHTTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPIEVAESVLFMVTRSKNVTVRDIVILPNSVDL
>NZ_CP029128.1|WP_108704756.1|5047076_5048078_+|LacI-family-DNA-binding-transcriptional-regulator
MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSRVIGMIIPKYDNRYFGSVAERFEEMARERGLLPIITCTRRSPELELEAVKAMLSWQVDWVVATGATNPDKISALCQHAGVPTVNLDLPGTIAPSVISDNYGGAKALTHKILANSARRRGEMAPLTFIGGRSSDHNTSERLRGFHDAHREQGLSVPQANILAPGYSKGKVEACLQERFGTAKVPLQGIFVNSTISLEGVVRWLSQAGLTGSEQPPMGCFDWDPFVYLLGHDIDMVQQDVPAMLEAVFTIIDSGDAGQQRIEIPPLLMSSS
>NZ_CP029128.1|WP_004103788.1|5048100_5049042_-|cytochrome-c-biogenesis-protein-CcdA
MSKEDDIRLDQKVRAAWMYYIAGQNQSEIASQLGTSRPVVQRLIAAAKEEGIVSIGLHHPVANCLDYALLLQEKYRLIECNIVPAFSEESTLDSVSFGCYQLMARYLQDDKEKIIGLGSGLTLKKALQRIDFDSQNTRCVALISAMDADGQCNYYDDVPLLLTSKIKAKYYQWPAPRYAQTQEEYDMWCTSRLFRSVSAVARQADVIFVGIGPLGTQSPIFKDGFINQAQMDEVTAQGGIGEIMGRFIDAEGGVVDSEINRMITSYDIRQNQCPRIAVACGEYKRPAILAALKGGWINGLVTDEHTARWLLTR
>NZ_CP029128.1|WP_049128618.1|5049248_5050616_+|mannitol-dehydrogenase-family-protein
MNNQFTWLHIGLGSFHRAHQAWYLHRLIASGDKRWHIAAGNIRNDAEQVVQALAAQGGRYVLETVSPEGEREYEEITSIQKLLPWQAGLKPLINEGANPQTKVIAFTVTEGGYYLNTRHKLETSNPDLQADLAGECKTIYGTIARILEKRMADNAGPLTLLNCDNVRHNGERFHDGMVEFLQLTGKQAVIDWMAANTTCPNTMVDRITPRPAADLPARVKAQTGIDDSAPVMGETFIQWVVENHFRDERPNLEAVGVEMVASVIPYEEAKIRILNSSHSCIAWAGTLIGQQYIHESTLTDFIYAIADRYVTEDVIPCLGDNGIDLPTYRDVVLKRFTNPYIQDTNQRVAADGFSKIPAMIAPTLQECYQRGARPEATAMLPALFFVFMEQWHKGSLPYEYQDGILDAQAVHQMFEASDPLALYARDKALFGELAENADFLALMREKVAAVYTLIN
>NZ_CP029128.1|WP_108704757.1|5050625_5052089_+|xylulokinase
MYLGIDLGTSEVKALVIDENNEVIASHSAPLSIQRPHPHWSEQSPQSWWEATEYLMTTLREKCAQHWPAIKAIGLSGQMHGAVLLDVGGEVIRPAILWNDTRCAAECAELEEMAPELHQVAGNLAMPGFTAPKLLWVRRHEPEHFQRTATVLLPKDYLRYRMTGKKVSDMSDAAGTLWLDVAKRDWSDSLLDKCGLSRSQMPTLVEGCEVSATLDPQVAERWGLNASVAVAGGGGDNAVSAIGVGAVSPGDAFISLGTSGVLFVVTDAYRPAPQSAVHAFCHVLPNLWHQMSVMLSAASCLQWFCRLAGTTEVALLEEIAELSEEEKAHAPFFLPYLSGERTPHNDPDARGMFWGMTHSSLRAQLGYAVLEGVSFGINDGLQVLKESGTQIEQCSLVGGGARSPFWAQLLADILDMPVVTHKGGETGGALGAARLACLAAGKPITAVCEKPEIWQTWRADPVRHQTLMRRYAQFKALYLNDLNYRQH
>NZ_CP029128.1|WP_108704758.1|5052158_5053436_+|MFS-transporter
MSINNKQWLGLPLNLLWGYIAIAVFMTGDGFELAFLSHYIKELGFSPAQASFAFTLYGLAAALSAWISGVVAEIITPLKTMMIGFVLWCVFHVLFLVFGLGHANYALILIFYGIRGFAYPLFLYSFIVAIIHNVKSDNASSAIGWFWAVYSIGIGVFGSYIPSFTIPHIGELGTLWLALAFCVTGGIIALASLRHIKTPHHMQNLTTREKFAELGRAATLLYTNRNILLSSMVRIINTLSLFGFAVIMPMMFVDELGFTTSEWLQVWAVFFFTTIFSNVLWGILGEKLGWMTVVRWFGCIGMAVSSLAFYYIPQHFGHNFAMALLPAIALGIFVAAFVPLAAVFPALEPKHKGAAISVYNLSAGMSNFLAPAIAVILLPFFSTIGVVIAYTALYVAAFFLCAFIRVEQPGFSHKEAPASEQVEFS

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Crispr_ID: NZ_CP029128_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029128_4

5358455-5358550

Orphan

Consensus_repeat	Method
TTGTGCCAACAGAATGCCAACAGAGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029128_4

>merge|NZ_CP029128|4|5358455-5358550|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAGAGTGCCAACGCAAACCCAGTAACCACGCTGCCTTCACGTGAGGTTGTGCCAACAGAATGCCAACAGAGTGCCA

>NZ_CP029128|4|4|5358455-5358550|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAGAGTGCCA	ACGCAAACCCAGTAACCACGCTGCCTTCACGTGAGG
TTGTGCCAACAGAATGCCAACAGAGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029128.1\|WP_108704878.1\|5362946_5363645_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704872.1\|5360379_5360682_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP029128.1\|WP_108704877.1\|5362434_5362950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704880.1\|5364358_5364616_+\|DNA-polymerase-III-subunit-theta	unknown	unknown	gnl\|CDD\|368909
NZ_CP029128.1\|WP_077266559.1\|5356577_5357174_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP029128.1\|WP_162556126.1\|5357921_5358068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_162556180.1\|5356039_5356165_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704866.1\|5352962_5353643_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP029128.1\|WP_108704876.1\|5361943_5362435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704874.1\|5361100_5361496_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704869.1\|5354792_5355764_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP029128.1\|WP_108704879.1\|5363631_5364270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704867.1\|5353639_5354485_-\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP029128.1\|WP_162556182.1\|5358964_5360380_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP029128.1\|WP_064349506.1\|5357281_5357494_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP029128.1\|WP_108704875.1\|5361488_5361947_+\|plasmid-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704873.1\|5360678_5361104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029128.1\|WP_108704868.1\|5354500_5354785_-\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP029128.1\|WP_064349508.1\|5357514_5357835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP029128.1\|WP_019725103.1\|5355852_5356047_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029128.1\|WP_077266559.1\|5356577_5357174_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.6641e-08
NZ_CP029128.1\|WP_108704872.1\|5360379_5360682_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	0.0015104
NZ_CP029128.1\|WP_108704867.1\|5353639_5354485_-\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	7.79171e-34
NZ_CP029128.1\|WP_162556182.1\|5358964_5360380_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	6.62815e-159
NZ_CP029128.1\|WP_064349506.1\|5357281_5357494_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	1.7637e-13
NZ_CP029128.1\|WP_108704866.1\|5352962_5353643_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	4.20541e-32
NZ_CP029128.1\|WP_108704880.1\|5364358_5364616_+\|DNA-polymerase-III-subunit-theta	gnl\|CDD\|368909	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit. DNA polymerase III (EC 2.7.7.7) is comprised of three tightly associated subunits, alpha, epsilon and theta. This family contains the theta subunit. The structure of the theta subunit shows that the N-terminal two thirds is comprised of three helices while the C-terminal third is disordered. The function of the theta subunit is poorly understood, but the interaction of the theta subunit with the epsilon subunit is thought to enhance the 3' to 5' exonucleolytic proofreading activity of epsilon.	5.52355e-33
NZ_CP029128.1\|WP_064349508.1\|5357514_5357835_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.00079474
NZ_CP029128.1\|WP_108704869.1\|5354792_5355764_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	4.6561e-07

>NZ_CP029128.1|WP_162556126.1|5357921_5358068_+|hypothetical-protein
MPKSNRFYQAQTHKNITRDRFVRSVNPIVAKKMRAILEDLKRKEEGRE
>NZ_CP029128.1|WP_064349508.1|5357514_5357835_+|hypothetical-protein
MQSGIARNLEPPILNPIELEGVLLNRLSSIGQKVYAEFLGISESTVSRRKGEGHFADIAKELSVLGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLGWD
>NZ_CP029128.1|WP_064349506.1|5357281_5357494_+|helix-turn-helix-domain-containing-protein
MSDTVNDAIKRAITIAGSQTELARKTGVNQSTVSKWLNGAEIGSRFIKSIVVATDGQVSASEILNSISHR
>NZ_CP029128.1|WP_077266559.1|5356577_5357174_-|helix-turn-helix-transcriptional-regulator
MKTLKERLAYAMSSTGKTNQTELGKQAGVPQSSISKILRGDSETSRHSGKIAAALGVSADWLINGTGSIYGESSQPIQAIDVSKNVKVFDCNGFTGNYVSWFNELPDHFRAYIIQGNTGISQAPAGAVVIVDPATSASANDLVLIKLKESISAFRYHIGGDGNGYLSVDDPRVPLAPVSDVSSVIGPIVQVFIPELKK
>NZ_CP029128.1|WP_162556180.1|5356039_5356165_-|hypothetical-protein
MLGWRMSKHGFRSLIYCLLVCGVIWAAVVIKILHVTGVFNG
>NZ_CP029128.1|WP_019725103.1|5355852_5356047_-|hypothetical-protein
MANSIPNSGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRNIEPNLVPAGTH
>NZ_CP029128.1|WP_108704869.1|5354792_5355764_-|hypothetical-protein
MSEIMDLVVIEKKNAMAVFTNNDQLDPLIELIEKEARSLVPDVTTKKGRDAIASMAHKVARSKTYIDNAGKDLVAELKALPKQIDESRRVVRERLDALKDEVRRPLTEWEAEQARIAAEKAAEEERLRIEAEEKAALEALKKQIEADHEMALLMNDAFDREQADKAAESERQRIAHEEEIKRLAAAAAAREVEKRAQREREEAAHREAVLKAQAEQAERDRIAAEQKAEADKQAAVEAERRKAQEEADRIRREAEQREQARLTEEKRKADEQARREADVKHRKTVGTDIVKALVANTSITRDQAIEVLTAIKDGNIPRTGISY
>NZ_CP029128.1|WP_108704868.1|5354500_5354785_-|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEQQKWIDDRAQEIIDALPKEPSGLFRFSVPMDKSPCEGLRSDAAGEAYNDLISAVAYAQAEYDWDHRTGCPF
>NZ_CP029128.1|WP_108704867.1|5353639_5354485_-|phage-recombination-protein-Bet
MSNELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARQLDPLLKPVHLVPMYVKDSKTGKGDFRDVVMPGIGLYRIQADRSGDYAGAREPEFGPDVTQTLTGVEVTFPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSSTEALPLVASEETLQAITDLLASLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP029128.1|WP_108704866.1|5352962_5353643_-|YqaJ-viral-recombinase-family-protein
MTPEIIFERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGTKWTDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYEDDARTLFEFTTDVQVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFIEKMDEALAEIGFTFGEQWK
>NZ_CP029128.1|WP_162556182.1|5358964_5360380_+|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDSSERTQKVLSILKPESFYLRPHQVIFAEMRQMYRDQKPVDLLTLFDALESKSLTESVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERMKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGVNCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKTLAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRRDKEDKPARKGGF
>NZ_CP029128.1|WP_108704872.1|5360379_5360682_+|winged-helix-turn-helix-transcriptional-regulator
MKKNTGKQAVINYIGQHPGCSFNEIRHATELDPSVVNSALWQMNRDGQVKREGECRHYRYTLIDTAVVTEIDPSVQYRQRPGGVNPMTTLFNQCLAGVRK
>NZ_CP029128.1|WP_108704873.1|5360678_5361104_+|hypothetical-protein
MNISTVNELIQSLESAGELSIKEQKYLELAKAYQQLAAENVALKSFGETLFEMHNTMNGEGTGIQGRAEVACQQVALEAAMEEFDAIETPATDRIVAEAEARGVEKFSAHLRANDSGASVCKMIALGADDFAKQLREGADK
>NZ_CP029128.1|WP_108704874.1|5361100_5361496_+|hypothetical-protein
MSKSLDIRAGDRFETVYPFIFVCTDHQQWDGNVFTDERWIGGCRKTFEPADCGYGDQTVYTADAEGKRILEVLAVAEMPGKWQRRIIYTCNLIDPDGKERKGRKAYTVTEDRFIKMSSGYFADYGVENIDD
>NZ_CP029128.1|WP_108704875.1|5361488_5361947_+|plasmid-protein
MTDITELTTEQALARIVELNDFERMISCDSTPSQGQFVVTGPNFQGNHARVGYCVQIRKLVGQFGSDMVFLRHANGSLTVHENNCYCAMDSEQEELARAVFEVLPEDEDYELGYSDCAKVWEVGFLIEKSQSRGTPDTPFSIAITKTKGGQP
>NZ_CP029128.1|WP_108704876.1|5361943_5362435_+|hypothetical-protein
MTDITELTSVQKNANIHRLSRLIACAPNDELRQLAVEVEQYTDQLIEALEKAQTINAAAEKLVRCKGRYHSELNYRALADLFGVTMPDLPPLEHENVHYADAAEMEIAALRQRIAELESRTVTVKLPDYRNTYKGPFADEVEHQVRLALELFSSAAAIKWEAE
>NZ_CP029128.1|WP_108704877.1|5362434_5362950_+|hypothetical-protein
MSLTHDELCQIACRFLQNNGFKVAFHDRFVAAVATGEQPDAIGFRNLASCLIEVKCSRADFLADKKKSFRRMPNQGMGDWRFFMAEPGFIEVSDLPPGWGLLHVRNGRVYKVHGWPGNALWCSREHKPFQANKQAECDYMYSALRRMDLRGHLKEVYDGVIVNRAAEGANQ
>NZ_CP029128.1|WP_108704878.1|5362946_5363645_+|hypothetical-protein
MTNKLTITNHRLAEIHAECEERDPAIVEIRAMIEELQERRNAERDCEPVAWTSEAALTDVACEEASMIGQEGVVGSIPLYRHAQPAPVVYSNFEDFWSVYIHPLAQDDELKDFAWDIWNACRAAMLQELQKSAGDAGDAGGVQISRGCRSNENMRDMQAGNSPVIGIDLAAGPDRTVEVRYVAPPGYVMVPKEPTPEILAVINEAIKSMRGSAATYARVLAAAPQEASSESQ
>NZ_CP029128.1|WP_108704879.1|5363631_5364270_+|hypothetical-protein
MNLNEIESILETRSPKSKSKRNVIGVGINDAPFAVSGVFDGKTITHRAYRSWFQMLMRCYDQKYLAKKPSYKGSQACRLWTSFMGFLPWWKNNFREGFHLDKDLLVTGNKLYSPDTCVYVPPALNTFTADNACVRGEYPIGVTWNKGMRKFVAEVNSREGRRLFLGSFKTPDEAYEAWLSAKLSIAESFKETCDEIHPRLYSGLISKIMSMR
>NZ_CP029128.1|WP_108704880.1|5364358_5364616_+|DNA-polymerase-III-subunit-theta
MSKWNIAAQSPEEQDKVNVDLAASGVAYKERLNMPVVAELVAREQPEHLREYFWERLNFYRLQSEQLPRASDPRYIEMASQNEKK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029128_2	2.1\|1067439\|46\|NZ_CP029128\|CRISPRCasFinder	1067439-1067484	46	MK416007	Klebsiella phage ST405-OXA48phi1.2, complete genome	6624-6669	2	0.957
NZ_CP029128_1	1.5\|1017273\|32\|NZ_CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017273-1017304	32	NC_029094	Pseudoalteromonas phage H101, complete genome	24076-24107	7	0.781
NZ_CP029128_3	3.1\|5041182\|34\|NZ_CP029128\|CRISPRCasFinder	5041182-5041215	34	NC_022437	Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence	33921-33954	7	0.794
NZ_CP029128_1	1.3\|1017153\|32\|NZ_CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017153-1017184	32	NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	30958-30989	8	0.75
NZ_CP029128_1	1.4\|1017213\|32\|NZ_CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017213-1017244	32	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	114499-114530	8	0.75
NZ_CP029128_1	1.8\|1017453\|32\|NZ_CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017453-1017484	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	2049016-2049047	9	0.719
NZ_CP029128_1	1.6\|1017333\|32\|NZ_CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017333-1017364	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1755665-1755696	11	0.656

1. spacer 2.1|1067439|46|NZ_CP029128|CRISPRCasFinder matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 2, identity: 0.957

ggattcggctcttgggccgtttccattcggctcttgggacgaatgc	CRISPR spacer
ggattcggctcatgagccgtttccattcggctcttgggacgaatgc	Protospacer
*********** **.*******************************

2. spacer 1.5|1017273|32|NZ_CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NC_029094 (Pseudoalteromonas phage H101, complete genome) position: , mismatch: 7, identity: 0.781

gcattaccgcacttcatataattttcgaggaa	CRISPR spacer
ccattaccgcacttgatataattttataaata	Protospacer
 ************* **********  *.. *

3. spacer 3.1|5041182|34|NZ_CP029128|CRISPRCasFinder matches to NC_022437 (Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence) position: , mismatch: 7, identity: 0.794

aaccgggcgcgccaggccctggaaaatctcagac	CRISPR spacer
aacgctgcgcgcaaggcgctggaaaatctcaggg	Protospacer
***   ****** **** **************.

4. spacer 1.3|1017153|32|NZ_CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049813 (Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tactga--actgctggaaatggttctcgcgtttc	CRISPR spacer
--atgaccgctgctggaaatgggtcgcgcgttat	Protospacer
   ***  .************* ** ****** .

5. spacer 1.4|1017213|32|NZ_CP029128|CRISPRCasFinder,CRT,PILER-CR matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atttcgttaacagtggcggaaaaaaactcact	CRISPR spacer
acactgttaacagtggtggaacaaaactatct	Protospacer
*. ..***********.**** ******  **

6. spacer 1.8|1017453|32|NZ_CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.719

gatctgaaaatctcgttcaagtcgccgactca	CRISPR spacer
aattccaaactttcgttcaagtcgccgacggg	Protospacer
.**.. *** *.*****************  .

7. spacer 1.6|1017333|32|NZ_CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

tattgccttccacagcggcgtcccgggccgtt	CRISPR spacer
gggccgcttccacagcggcgttcagggccagg	Protospacer
 . .  ***************.* *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

388074 : 440687

Escherichia_phage(22.22%)

lysis,holin,tail,integrase

attL 382297:382312|attR 431090:431105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
382297:382312	attL	NA	NA	NA	NA
WP_108703867.1\|388074_391695_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	1.8e-153	47.3
WP_108703868.1\|391660_395203_-	hypothetical protein	Q6UAW1	Klebsiella_phage	0.0e+00	64.0
WP_108703869.1\|395212_395824_-\|tail	tail assembly protein	K7P6V1	Enterobacteria_phage	5.7e-57	62.5
WP_108703870.1\|395942_396656_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	6.6e-105	70.3
WP_108703871.1\|396667_397420_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.0e-99	67.1
WP_108703872.1\|397416_397764_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.0e-34	61.7
WP_108703873.1\|397768_398005_-	hypothetical protein	K7P7A9	Enterobacteria_phage	5.7e-05	41.8
WP_108703874.1\|398291_398540_-\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.3e-07	36.4
WP_108703875.1\|398662_398851_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_108703876.1\|398914_399319_+	HicB family protein	NA	NA	NA	NA
WP_108703877.1\|399532_400138_-	hypothetical protein	H9C175	Pectobacterium_phage	3.6e-51	50.8
WP_108703878.1\|400134_400479_-	DUF968 domain-containing protein	Q6V7S4	Burkholderia_virus	1.7e-21	52.5
WP_108703881.1\|401754_402018_-	hypothetical protein	A0A2P0P958	Salmonella_phage	9.1e-28	69.0
WP_162556068.1\|402031_402184_-	hypothetical protein	NA	NA	NA	NA
WP_162556077.1\|402180_402342_-	hypothetical protein	NA	NA	NA	NA
WP_108703882.1\|402338_403127_-	hypothetical protein	C7BGF1	Burkholderia_phage	5.6e-65	53.7
WP_108703883.1\|403119_403335_-	hypothetical protein	NA	NA	NA	NA
WP_108703884.1\|403331_404000_-	hypothetical protein	NA	NA	NA	NA
WP_108703885.1\|404020_405010_-	hypothetical protein	S5FM81	Shigella_phage	2.4e-28	41.8
WP_108703887.1\|405275_405689_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.7e-44	70.5
WP_108703888.1\|405688_405958_-	hypothetical protein	NA	NA	NA	NA
WP_108703889.1\|406007_406514_+	hypothetical protein	Q7Y5W5	Haemophilus_phage	1.1e-10	47.4
WP_108703890.1\|406927_407218_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_162556078.1\|407310_407529_+	hypothetical protein	NA	NA	NA	NA
WP_108703891.1\|407634_407850_+	DUF1233 family excisionase	NA	NA	NA	NA
WP_108703892.1\|407849_409136_+\|integrase	tyrosine-type recombinase/integrase	A0A0U2JGI6	Escherichia_phage	4.3e-123	54.2
WP_088402565.1\|409165_409249_+	protein MgtS	NA	NA	NA	NA
WP_108703893.1\|409855_410134_+	hypothetical protein	NA	NA	NA	NA
WP_017145799.1\|410299_411331_-	methionine synthase	NA	NA	NA	NA
WP_108703894.1\|411358_412336_-	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_070557679.1\|412656_413886_-	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_064395819.1\|414187_414646_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004102389.1\|415035_416106_-	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	3.8e-64	44.3
WP_162556079.1\|417840_419421_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.5e-167	53.9
WP_004113311.1\|419476_420727_+	MFS transporter	NA	NA	NA	NA
WP_024274239.1\|420800_421889_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	6.4e-176	82.5
WP_004102395.1\|421991_422255_-	hypothetical protein	A0A077SK33	Escherichia_phage	1.1e-33	81.2
WP_004102396.1\|422280_422535_-	hypothetical protein	NA	NA	NA	NA
WP_004102397.1\|422810_423137_+	hypothetical protein	NA	NA	NA	NA
WP_004102398.1\|423245_423518_+	DUF883 family protein	NA	NA	NA	NA
WP_026055938.1\|423752_424064_-	hypothetical protein	NA	NA	NA	NA
WP_004102402.1\|424272_424812_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_032728331.1\|424921_425404_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_108703896.1\|425630_426083_-	hypothetical protein	NA	NA	NA	NA
WP_004102408.1\|426079_426640_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
WP_070557682.1\|427045_427717_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-78	59.0
WP_004102413.1\|427893_428505_+	hypothetical protein	NA	NA	NA	NA
WP_108703897.1\|428655_430155_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_064396138.1\|430390_431299_+	transcriptional regulator FeaR	NA	NA	NA	NA
431090:431105	attR	NA	NA	NA	NA
WP_004112635.1\|431299_431623_-	YdbL family protein	NA	NA	NA	NA
WP_004101631.1\|431630_431816_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_108703898.1\|431815_434455_-	YdbH family protein	NA	NA	NA	NA
WP_004101627.1\|434650_435151_+	DedA family protein	NA	NA	NA	NA
WP_004112629.1\|435297_436287_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.9e-70	45.7
WP_070557686.1\|436412_436853_+	heat shock protein HslJ	NA	NA	NA	NA
WP_004101621.1\|436849_437122_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004101619.1\|437449_437815_-	hypothetical protein	NA	NA	NA	NA
WP_070557688.1\|438045_438588_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	2.4e-67	64.0
WP_108703899.1\|438595_438868_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	4.0e-10	40.9
WP_004101612.1\|438857_439250_-	membrane protein	K7PHB9	Enterobacterial_phage	2.2e-25	53.7
WP_070557690.1\|439326_439689_-	antitermination protein	C6ZR44	Salmonella_phage	1.5e-28	55.8
WP_016807747.1\|440150_440687_-	helix-turn-helix transcriptional regulator	K7PKK1	Enterobacteria_phage	4.7e-31	50.3

DBSCAN-SWA_2

1049169 : 1073689

Salmonella_phage(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004100552.1\|1049169_1049928_+	DNA-binding transcriptional repressor DeoR	A0A077SK06	Escherichia_phage	1.6e-11	27.2
WP_049128024.1\|1049958_1051161_-	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.2e-96	48.2
WP_108704017.1\|1051947_1052724_-	hypothetical protein	NA	NA	NA	NA
WP_108704018.1\|1052726_1054571_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	2.7e-25	55.0
WP_108704019.1\|1055527_1056301_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.7e-67	52.1
WP_108704020.1\|1056297_1057497_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.3e-158	74.8
WP_108704021.1\|1057496_1057850_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	5.6e-49	77.8
WP_108704022.1\|1057851_1058877_-	DUF2184 domain-containing protein	A0A2H4JCJ1	uncultured_Caudovirales_phage	2.4e-71	76.9
WP_108704023.1\|1058888_1059383_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	6.1e-49	63.1
WP_108704024.1\|1059394_1060594_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.2e-105	55.3
WP_108705026.1\|1060855_1061404_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	9.7e-48	54.6
WP_108704025.1\|1061459_1062911_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.2e-190	68.1
WP_162556087.1\|1063071_1063299_+	hypothetical protein	NA	NA	NA	NA
WP_108704027.1\|1064781_1065051_-	hypothetical protein	G8C7W1	Escherichia_phage	3.2e-12	48.3
WP_108704028.1\|1065058_1065685_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	2.2e-88	76.3
WP_108705027.1\|1065684_1065831_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.1e-05	52.1
WP_064364905.1\|1066382_1066595_-	hypothetical protein	NA	NA	NA	NA
WP_064364907.1\|1066591_1066885_-	hypothetical protein	NA	NA	NA	NA
WP_108704029.1\|1066897_1067974_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	4.3e-31	43.2
WP_004111712.1\|1067970_1068225_-	hypothetical protein	NA	NA	NA	NA
WP_004111711.1\|1068238_1068664_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_071993411.1\|1068647_1068875_-	transcriptional regulator	H9C161	Pectobacterium_phage	7.1e-05	35.1
WP_108704030.1\|1068957_1069374_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.0e-29	50.4
WP_108704031.1\|1069891_1070185_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_128334537.1\|1070250_1070484_+	hypothetical protein	NA	NA	NA	NA
WP_108704032.1\|1070707_1071394_+	hypothetical protein	M1F3E2	Salmonella_phage	1.5e-69	61.2
WP_108704033.1\|1071390_1072095_+	hypothetical protein	A0A1W6JP46	Morganella_phage	3.0e-25	32.5
WP_004111685.1\|1072187_1072403_+	DUF1233 family excisionase	NA	NA	NA	NA
WP_108704034.1\|1072402_1073689_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	9.7e-123	54.5

DBSCAN-SWA_3

4515799 : 4578599

Erwinia_phage(34.78%)

plate,head,tail,lysis,tRNA,capsid,integrase,portal,terminase

attL 4516940:4516968|attR 4548622:4548650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004104636.1\|4515799_4516567_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004104634.1\|4516606_4516954_+	50S ribosomal protein L19	NA	NA	NA	NA
4516940:4516968	attL	NA	NA	NA	NA
WP_000972009.1\|4517099_4517318_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	6.1e-38	97.2
WP_108704648.1\|4517393_4518563_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	4.6e-204	97.7
WP_000978868.1\|4518559_4519045_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.5e-81	95.0
WP_108704649.1\|4519056_4521498_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	89.1
WP_000763323.1\|4521490_4521610_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.4e-15	100.0
WP_047720662.1\|4521642_4521978_-\|tail	phage tail assembly protein	A0A218M4J8	Erwinia_phage	6.8e-52	98.2
WP_047720661.1\|4522041_4522560_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	5.0e-94	100.0
WP_108704650.1\|4522575_4523754_-\|tail	phage tail sheath protein	Q37844	Escherichia_phage	1.4e-213	95.7
WP_108704651.1\|4523864_4524941_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.8e-30	41.9
WP_108704652.1\|4524953_4525715_-	hypothetical protein	NA	NA	NA	NA
WP_108704653.1\|4525716_4527402_-	hypothetical protein	NA	NA	NA	NA
WP_162556172.1\|4527404_4527992_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	7.7e-51	51.8
WP_108704655.1\|4527999_4528908_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.1e-112	70.9
WP_094963300.1\|4528912_4529260_-\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	5.4e-44	74.8
WP_108704656.1\|4529256_4529898_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	4.4e-100	85.9
WP_108704657.1\|4529966_4530416_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.5e-70	96.0
WP_108704658.1\|4530408_4530876_-\|tail	phage tail protein	O80312	Escherichia_phage	5.1e-82	97.4
WP_108704659.1\|4530983_4531397_-\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	3.2e-35	60.3
WP_108704660.1\|4531393_4531825_-	lysA protein	A0A218M4L6	Erwinia_phage	1.6e-61	81.8
WP_063408324.1\|4531821_4532334_-	lysozyme	A0A218M4K3	Erwinia_phage	3.0e-91	97.6
WP_108704661.1\|4532317_4532539_-	primosomal protein	A0A218M4L5	Erwinia_phage	3.2e-34	97.3
WP_108704662.1\|4532529_4532733_-\|tail	phage tail protein	A0A218M4L8	Erwinia_phage	1.3e-29	95.5
WP_108704663.1\|4532732_4533242_-\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	2.5e-90	98.8
WP_108704664.1\|4533335_4534085_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	4.6e-117	90.4
WP_108704665.1\|4534089_4535157_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	9.6e-193	96.6
WP_108704666.1\|4535232_4536087_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.4e-130	83.5
WP_108704667.1\|4536252_4538022_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	0.0e+00	99.2
WP_108704668.1\|4538021_4538768_+	hypothetical protein	O80303	Escherichia_phage	8.1e-138	94.8
WP_108704669.1\|4538764_4539787_+\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	4.7e-197	99.1
WP_001222154.1\|4540264_4540498_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
WP_000232650.1\|4540501_4540684_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
WP_162556173.1\|4540803_4542873_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	92.3
WP_108704672.1\|4543016_4543298_-	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	1.3e-11	50.0
WP_057222569.1\|4543294_4543567_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	6.3e-32	73.3
WP_108704673.1\|4543563_4544145_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	6.8e-84	78.2
WP_108704674.1\|4544141_4544369_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	5.6e-26	80.6
WP_094963280.1\|4544368_4544596_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.2e-30	97.3
WP_108704675.1\|4544663_4545002_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	2.1e-53	93.8
WP_000920169.1\|4544965_4545166_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.2e-32	100.0
WP_020316738.1\|4545173_4545683_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
WP_001278194.1\|4545715_4546087_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	1.4e-61	99.2
WP_108704676.1\|4546200_4547043_+	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	6.6e-112	70.8
WP_000830450.1\|4547056_4547461_+	hypothetical protein	NA	NA	NA	NA
WP_108704677.1\|4547490_4548540_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	1.8e-188	90.3
WP_004104630.1\|4548756_4549194_+	DUF2946 domain-containing protein	NA	NA	NA	NA
4548622:4548650	attR	NA	NA	NA	NA
WP_070555967.1\|4549247_4550618_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_004104626.1\|4550622_4551105_-	OmpA family protein	NA	NA	NA	NA
WP_070555966.1\|4551116_4552340_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_004104622.1\|4552332_4552842_-	YfiR family protein	NA	NA	NA	NA
WP_004104620.1\|4553185_4554256_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	8.1e-91	51.8
WP_004104619.1\|4554265_4555387_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_064374018.1\|4555456_4556329_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_004104617.1\|4556325_4557486_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_101706155.1\|4557592_4557640_-	hypothetical protein	NA	NA	NA	NA
WP_004104616.1\|4557747_4558083_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_004104615.1\|4558354_4559092_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_004104614.1\|4559224_4560205_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_108704678.1\|4560201_4560933_+	polyphenol oxidase	NA	NA	NA	NA
WP_108704679.1\|4561060_4563634_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.8e-128	35.6
WP_004114495.1\|4569568_4570024_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.3e-33	46.7
WP_004104606.1\|4570297_4571596_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.5
WP_004104604.1\|4571598_4571925_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_064398091.1\|4571965_4573321_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_108704681.1\|4573414_4576093_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_004114489.1\|4576128_4576827_-	DTW domain-containing protein	NA	NA	NA	NA
WP_108704682.1\|4576896_4577322_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	1.6e-13	41.0
WP_004104598.1\|4577525_4578599_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_4

5120033 : 5133706

Enterobacteria_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108704779.1\|5120033_5120951_+	hypothetical protein	A0A0N7KVT5	Yellowstone_lake_phycodnavirus	7.1e-27	36.2
WP_108704780.1\|5120985_5121945_+	acyltransferase family protein	NA	NA	NA	NA
WP_108704781.1\|5122250_5123657_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	7.3e-39	28.7
WP_108704782.1\|5123869_5125285_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.6e-55	30.5
WP_108704783.1\|5125307_5126678_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	7.1e-31	26.4
WP_108704784.1\|5126772_5127837_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-104	55.0
WP_108704785.1\|5127848_5128718_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-103	65.3
WP_108704786.1\|5128749_5129640_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.9e-27	32.1
WP_108704787.1\|5129654_5130209_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-50	56.7
WP_108704788.1\|5130382_5131549_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.0
WP_162556121.1\|5131928_5132093_+	hypothetical protein	NA	NA	NA	NA
WP_004138729.1\|5132111_5132234_-	small membrane protein	NA	NA	NA	NA
WP_004103673.1\|5132701_5133706_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	6.8e-31	28.6

DBSCAN-SWA_5

5299846 : 5321160

Pectobacterium_phage(29.41%)

holin,terminase,integrase

attL 5299659:5299718|attR 5321414:5321481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5299659:5299718	attL	NA	NA	NA	NA
WP_064167254.1\|5299846_5300863_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	2.8e-125	64.5
WP_015365914.1\|5300846_5301092_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	2.8e-07	41.4
WP_108704849.1\|5301488_5302055_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	7.9e-53	63.0
WP_108704850.1\|5302054_5304208_-	hypothetical protein	H9C157	Pectobacterium_phage	6.9e-97	34.1
WP_041165546.1\|5304252_5304576_-	hypothetical protein	NA	NA	NA	NA
WP_041165547.1\|5305065_5305452_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	1.5e-15	59.4
WP_041165548.1\|5305532_5305727_+	hypothetical protein	NA	NA	NA	NA
WP_082236706.1\|5305789_5306236_+	hypothetical protein	H9C162	Pectobacterium_phage	1.0e-26	51.4
WP_015365921.1\|5306319_5306478_+	hypothetical protein	NA	NA	NA	NA
WP_108704851.1\|5306480_5307473_+	replication protein RepO	A0A067ZIA1	Vibrio_phage	9.1e-28	52.3
WP_108705084.1\|5307481_5308393_+	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	2.5e-16	40.7
WP_040200578.1\|5308395_5308884_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	3.5e-09	49.0
WP_108704852.1\|5308889_5311604_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	1.8e-288	58.5
WP_108704853.1\|5311603_5314498_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	71.2
WP_162556125.1\|5314494_5314932_-	hypothetical protein	NA	NA	NA	NA
WP_076752321.1\|5315065_5315407_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	2.0e-19	48.2
WP_076752320.1\|5315403_5317014_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	1.2e-226	70.8
WP_108704855.1\|5317031_5319683_+	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	1.5e-45	40.9
WP_108704856.1\|5319691_5319970_+	hypothetical protein	NA	NA	NA	NA
WP_108704857.1\|5320059_5320284_+\|holin	holin	A0A0P0ZFW5	Escherichia_phage	1.6e-20	70.1
WP_108704858.1\|5320267_5320804_+	lysozyme	K7PM52	Enterobacteria_phage	6.1e-79	78.0
WP_108704859.1\|5320800_5321160_+	hypothetical protein	R9TPM9	Aeromonas_phage	1.3e-16	44.0
5321414:5321481	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5346639 : 5426392

Escherichia_phage(38.46%)

plate,lysis,tRNA,coat,integrase,terminase

attL 5348595:5348615|attR 5393847:5393867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004103405.1\|5346639_5347383_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	1.5e-22	29.1
WP_004103403.1\|5347422_5347818_-	membrane protein	NA	NA	NA	NA
5348595:5348615	attL	NA	NA	NA	NA
WP_108704864.1\|5348647_5349907_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	4.3e-224	89.7
WP_023283988.1\|5349949_5350195_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
WP_108704865.1\|5350354_5350570_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	5.2e-13	50.0
WP_038989582.1\|5350571_5350790_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.1e-09	47.2
WP_108705085.1\|5350786_5352793_-	phage N-6-adenine-methyltransferase	A0A1B0V7P0	Salmonella_phage	6.4e-113	46.0
WP_046878446.1\|5352807_5352966_-	DUF1317 family protein	T1SAR0	Salmonella_phage	2.2e-13	69.2
WP_108704866.1\|5352962_5353643_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.8e-123	92.9
WP_108704867.1\|5353639_5354485_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.9e-67	59.8
WP_108704868.1\|5354500_5354785_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.7e-38	77.7
WP_108704869.1\|5354792_5355764_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	5.6e-38	75.7
WP_019725103.1\|5355852_5356047_-	hypothetical protein	NA	NA	NA	NA
WP_162556180.1\|5356039_5356165_-	hypothetical protein	NA	NA	NA	NA
WP_077266559.1\|5356577_5357174_-	helix-turn-helix transcriptional regulator	K7P850	Enterobacteria_phage	3.3e-09	28.6
WP_064349506.1\|5357281_5357494_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064349508.1\|5357514_5357835_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	8.5e-36	67.9
WP_162556126.1\|5357921_5358068_+	hypothetical protein	NA	NA	NA	NA
WP_162556127.1\|5358108_5358960_+	DNA replication protein	F1C5C3	Cronobacter_phage	9.0e-85	56.0
WP_162556182.1\|5358964_5360380_+	AAA family ATPase	Q9MCT4	Escherichia_phage	2.9e-184	67.5
WP_108704872.1\|5360379_5360682_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_108704873.1\|5360678_5361104_+	hypothetical protein	E7C9P6	Salmonella_phage	1.3e-20	65.9
WP_108704874.1\|5361100_5361496_+	hypothetical protein	G8C7U4	Escherichia_phage	1.7e-57	79.7
WP_108704875.1\|5361488_5361947_+	plasmid protein	NA	NA	NA	NA
WP_108704876.1\|5361943_5362435_+	hypothetical protein	A0A2H4FRZ0	Salmonella_phage	1.9e-26	70.7
WP_108704877.1\|5362434_5362950_+	hypothetical protein	G9L6B3	Escherichia_phage	2.9e-70	73.3
WP_108704878.1\|5362946_5363645_+	hypothetical protein	C6ZR26	Salmonella_phage	8.4e-12	57.1
WP_108704879.1\|5363631_5364270_+	hypothetical protein	L0AQZ0	Klebsiella_phage	2.0e-44	41.5
WP_108704880.1\|5364358_5364616_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.0e-24	71.4
WP_064349536.1\|5364806_5365256_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	9.7e-38	52.4
WP_108704881.1\|5365248_5365419_+	hypothetical protein	G8C7V4	Escherichia_phage	1.8e-16	74.5
WP_028013586.1\|5365411_5365702_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.2e-44	89.6
WP_108704882.1\|5365698_5366061_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	5.6e-52	83.1
WP_108704883.1\|5366057_5366198_+	YlcG family protein	NA	NA	NA	NA
WP_032737394.1\|5366194_5366695_+	antiterminator	G8C7V7	Escherichia_phage	6.7e-88	92.7
WP_032729783.1\|5367134_5367338_+	hypothetical protein	I6R0S9	Salmonella_phage	1.0e-26	84.1
WP_108705086.1\|5367315_5367813_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.9e-80	86.1
WP_108704884.1\|5367809_5368271_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	1.0e-45	64.7
WP_108704885.1\|5368721_5369462_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.9e-14	29.9
WP_108704886.1\|5369465_5370797_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	3.5e-152	59.7
WP_108704887.1\|5370808_5372227_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	3.6e-86	36.5
WP_108704888.1\|5372223_5373045_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	2.0e-52	40.8
WP_108704889.1\|5373057_5374671_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_108704890.1\|5374686_5375547_+	hypothetical protein	NA	NA	NA	NA
WP_108704891.1\|5375560_5376592_+	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	3.3e-73	45.8
WP_017898838.1\|5376663_5377146_+	hypothetical protein	NA	NA	NA	NA
WP_023283949.1\|5377142_5377571_+	hypothetical protein	A0A0U2S646	Escherichia_phage	1.4e-22	39.1
WP_108704892.1\|5377567_5378002_+	hypothetical protein	NA	NA	NA	NA
WP_001139600.1\|5377985_5378924_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	8.5e-52	37.9
WP_108704893.1\|5378928_5380323_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.5e-68	35.5
WP_108704894.1\|5380326_5380764_+	hypothetical protein	A0A0U2S616	Escherichia_phage	6.4e-26	38.9
WP_108704895.1\|5380767_5381340_+	hypothetical protein	NA	NA	NA	NA
WP_108705087.1\|5381463_5383284_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	3.7e-19	38.2
WP_108704896.1\|5383286_5384012_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	7.1e-30	37.5
WP_108704897.1\|5384008_5384284_+	hypothetical protein	NA	NA	NA	NA
WP_108704898.1\|5384283_5385252_+	hypothetical protein	NA	NA	NA	NA
WP_108704899.1\|5385254_5385971_+	hypothetical protein	A0A0U2JTX5	Escherichia_phage	7.5e-24	29.9
WP_108704900.1\|5385967_5386300_+	hypothetical protein	NA	NA	NA	NA
WP_108704901.1\|5386296_5387715_+\|plate	baseplate J-like family protein	A0A0U2RJZ0	Escherichia_phage	4.3e-47	43.0
WP_108704902.1\|5387716_5388421_+	hypothetical protein	NA	NA	NA	NA
WP_108704903.1\|5388475_5388994_+	hypothetical protein	NA	NA	NA	NA
WP_108704904.1\|5389057_5391409_+	GDSL family lipase	A0A2H4N7A3	Pectobacterium_phage	4.5e-33	53.3
WP_108704905.1\|5391411_5392188_+	hypothetical protein	NA	NA	NA	NA
WP_108704907.1\|5392667_5393714_+	hypothetical protein	I7B6L0	Escherichia_phage	2.0e-09	43.9
WP_064397741.1\|5393938_5394505_-	hydrolase	NA	NA	NA	NA
5393847:5393867	attR	NA	NA	NA	NA
WP_004103400.1\|5394774_5396562_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_004103398.1\|5396563_5397007_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_004103396.1\|5397156_5397897_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004113791.1\|5398051_5398573_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_108704908.1\|5398686_5399349_+	hypothetical protein	NA	NA	NA	NA
WP_004103390.1\|5399472_5400084_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_004103386.1\|5400092_5401103_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.3e-08	25.0
WP_070556964.1\|5401310_5402096_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_108704909.1\|5402095_5402848_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	1.3e-15	32.5
WP_016808309.1\|5402926_5403871_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_108704910.1\|5403886_5405209_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.5e-14	36.8
WP_004103380.1\|5405326_5406301_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_004103379.1\|5406371_5407814_-	pyruvate kinase	NA	NA	NA	NA
WP_004103378.1\|5407939_5408809_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_004103371.1\|5409170_5410646_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	3.7e-78	36.8
WP_004103369.1\|5410866_5412678_+	phosphogluconate dehydratase	NA	NA	NA	NA
WP_004103368.1\|5412715_5413357_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_004103366.1\|5413410_5414589_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_017145640.1\|5414724_5415087_+	LexA family transcriptional regulator	NA	NA	NA	NA
WP_017145641.1\|5415235_5415916_+	DUF533 domain-containing protein	NA	NA	NA	NA
WP_016808307.1\|5416049_5418110_+	oligopeptidase B	NA	NA	NA	NA
WP_004103360.1\|5418116_5418776_-	exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	1.0e-14	32.3
WP_004103351.1\|5418854_5419085_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	58.8
WP_016808306.1\|5419220_5419595_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_108704911.1\|5419599_5420469_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_023321222.1\|5420485_5420824_+	YebY family protein	NA	NA	NA	NA
WP_004113762.1\|5421210_5422170_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108704912.1\|5422181_5424515_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_016808303.1\|5424517_5425282_-	molecular chaperone	NA	NA	NA	NA
WP_070557030.1\|5425299_5425818_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004103335.1\|5425840_5426392_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029127

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029128

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection