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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029146 Rhodococcus ruber strain SD3 chromosome, complete genome 3 crisprs Cas9_archaeal,csa3,cas3,WYL,c2c9_V-U4,DinG,DEDDh,cas4 0 2 1 0

Results visualization

1. NZ_CP029146
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029146_1 1047917-1048072 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029146_2 3063890-3063966 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029146_3 3593881-3593969 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP029146_1 1.2|1048013|24|NZ_CP029146|CRISPRCasFinder 1048013-1048036 24 NC_009329 Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence 47430-47453 3 0.875
NZ_CP029146_1 1.2|1048013|24|NZ_CP029146|CRISPRCasFinder 1048013-1048036 24 NZ_CP038238 Leisingera sp. NJS201 plasmid unnamed4, complete sequence 18949-18972 4 0.833
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 NZ_CP021083 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence 41927-41957 8 0.742
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 MT522001 Microbacterium phage Karate, complete genome 41572-41602 8 0.742
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 NC_005262 Burkholderia cepacia phage Bcep22, complete genome 54330-54360 8 0.742
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 NC_019917 Burkholderia phage BcepMigl, complete genome 53620-53650 9 0.71
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 FJ937737 Burkholderia cenocepacia phage BcepIL02, complete genome 53288-53318 9 0.71
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 NC_012743 Burkholderia phage BcepIL02, complete genome 53288-53318 9 0.71
NZ_CP029146_2 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder 3063913-3063943 31 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 210364-210394 9 0.71

1. spacer 1.2|1048013|24|NZ_CP029146|CRISPRCasFinder matches to NC_009329 (Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence) position: , mismatch: 3, identity: 0.875

ccggatcgtgcggtggtggatttc	CRISPR spacer
cgggatcgtgcggtggtgtatttg	Protospacer
* **************** **** 

2. spacer 1.2|1048013|24|NZ_CP029146|CRISPRCasFinder matches to NZ_CP038238 (Leisingera sp. NJS201 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.833

ccggatcgtgcggtggtggatttc	CRISPR spacer
acggatcgtgcggtggtgcattct	Protospacer
 ***************** ***..

3. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
ggcgcgcgccacgtcgtccaggcgcaccgac	Protospacer
****************** ***.   *.  *

4. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to MT522001 (Microbacterium phage Karate, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gacgcgcgccacgtcgtcaatggcgttcttg	Protospacer
*.****************** * ***.... 

5. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gaggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
*. ***************.******  . * 

6. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to NC_019917 (Burkholderia phage BcepMigl, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

7. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to FJ937737 (Burkholderia cenocepacia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

8. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to NC_012743 (Burkholderia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

9. spacer 2.1|3063913|31|NZ_CP029146|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
atggcgcgccaagtggtcaaggtcgtggtca	Protospacer
.  ******** ** ***********  .* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2528633 : 2536818 9 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage