CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP029233	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence	0 crisprs	RT	10
NZ_CP029231	Sinorhizobium fredii CCBAU 45436 chromosome, complete genome	1 crisprs	csa3,WYL,cas3,DEDDh	5
NZ_CP029235	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436e, complete sequence	0 crisprs	NA	1
NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	0 crisprs	NA	1
NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	0 crisprs	csa3,PD-DExK	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029231_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029231_1

834164-834273

Orphan

Consensus_repeat	Method
GCGGCGCGGACGGTCGTCACGATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029231_1

>merge|NZ_CP029231|1|834164-834273|CRISPRCasFinder
GCGGCGCGGACGGTCGTCACGATCGCCACGGTCCGGGCGCGGACCACGGTCACCGAAACCACCACGATCCGGACGGTCGCCGTCGCGGCGCGGACGGTCGTCACGGTCGC

>NZ_CP029231|1|1|834164-834273|CRISPRCasFinder
GCGGCGCGGACGGTCGTCACGATCGC	CACGGTCCGGGCGCGGACCACGGTCACCGAAACCACCACGATCCGGACGGTCGCCGTC
GCGGCGCGGACGGTCGTCACGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029231.1\|WP_014327824.1\|832112_832688_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP029231.1\|WP_014327828.1\|836702_837647_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP029231.1\|WP_037449800.1\|842146_843034_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|224477
NZ_CP029231.1\|WP_037449794.1\|844103_844928_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP029231.1\|WP_014327818.1\|825236_826640_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP029231.1\|WP_037449797.1\|843037_843697_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP029231.1\|WP_014327823.1\|830185_831685_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_CP029231.1\|WP_037449806.1\|839202_840468_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|235987
NZ_CP029231.1\|WP_014327822.1\|829673_829979_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226916
NZ_CP029231.1\|WP_014327819.1\|826767_827907_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NZ_CP029231.1\|WP_048655341.1\|829023_829677_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP029231.1\|WP_014327825.1\|832723_833677_-\|membrane-protein	unknown	unknown	unknown
NZ_CP029231.1\|WP_014327820.1\|828049_828907_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP029231.1\|WP_012707461.1\|833868_834117_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP029231.1\|WP_014327826.1\|834960_835293_+\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP029231.1\|WP_014327827.1\|835328_836372_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP029231.1\|WP_014327829.1\|837673_838411_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|171820
NZ_CP029231.1\|WP_037449803.1\|840754_841942_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|224475
NZ_CP029231.1\|WP_003531676.1\|838750_838987_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP029231.1\|WP_109023308.1\|831750_831981_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029231.1\|WP_014327824.1\|832112_832688_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.2943e-64
NZ_CP029231.1\|WP_014327828.1\|836702_837647_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.9533e-133
NZ_CP029231.1\|WP_037449800.1\|842146_843034_+\|YicC-family-protein	gnl\|CDD\|224477	COG1561, COG1561, Uncharacterized stress-induced protein [Function unknown].	2.3986e-112
NZ_CP029231.1\|WP_037449794.1\|844103_844928_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.16869e-132
NZ_CP029231.1\|WP_014327818.1\|825236_826640_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP029231.1\|WP_037449797.1\|843037_843697_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.77841e-116
NZ_CP029231.1\|WP_014327823.1\|830185_831685_-\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_CP029231.1\|WP_037449806.1\|839202_840468_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0
NZ_CP029231.1\|WP_014327822.1\|829673_829979_+\|membrane-protein	gnl\|CDD\|226916	COG4541, COG4541, Predicted membrane protein [Function unknown].	1.37585e-16
NZ_CP029231.1\|WP_014327819.1\|826767_827907_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	6.26298e-151
NZ_CP029231.1\|WP_048655341.1\|829023_829677_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	6.88305e-58
NZ_CP029231.1\|WP_014327827.1\|835328_836372_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	3.13474e-171
NZ_CP029231.1\|WP_014327820.1\|828049_828907_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.11141e-30
NZ_CP029231.1\|WP_012707461.1\|833868_834117_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.52598e-37
NZ_CP029231.1\|WP_014327826.1\|834960_835293_+\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	1.83116e-22
NZ_CP029231.1\|WP_037449803.1\|840754_841942_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	6.62617e-147
NZ_CP029231.1\|WP_003531676.1\|838750_838987_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	3.25258e-33
NZ_CP029231.1\|WP_014327829.1\|837673_838411_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|171820	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed.	3.47459e-169

>NZ_CP029231.1|WP_012707461.1|833868_834117_-|30S-ribosomal-protein-S18
MAEVSSAPVRRPFHRRRKTCPFSGANAPRIDYKDVRLLQRYISERGKIVPSRITAVSQKKQRELAQAIKRARFLGLLPYVVS
>NZ_CP029231.1|WP_014327825.1|832723_833677_-|membrane-protein
MQNWNRTSLITGALAGIAAALLSMGANTQSSLAIVLYAASALPILIAGLGWGNAAAVTAIIAAGVTAASLVSSYFALLILVVTLVPAGWLSHLANLARPAPELGGPEGALAWYPLSDILGHLAGLVTLGMIIVATIVGYDSSVSDLMVDMVVEAVKAQEPLYNPDAAAIAQLKSMFTLALPLVQGAIWVVMLFAAYYIATRIVQMSGRSVRPREDIPSSLRMHRNAIFVFLAGLILTFLGGAPAAIGALVCGTFGAGFLLSGFASFHFRTRGKSWRLPVLWIAYLSVLVFTIPAVFFLLSGLTDTRRTIAVTPAGKS
>NZ_CP029231.1|WP_014327824.1|832112_832688_-|50S-ribosomal-protein-L9
MEVILLERIAKLGQMGETVKVRDGFARNYLLPLGKALRANAANKARFDSERATLEARNLERKSEAQTVAEKLDGKSFVIVRTAGETGQLYGSVAARDIVDVLAAEGFNINRNQVNLNQPIKSIGVHKVTLHLHAEVDVVVELNVARSAEEAERQAKGESLTSAEAIYGVDEDALKPEDFFNPEAEFAAEEE
>NZ_CP029231.1|WP_109023308.1|831750_831981_-|hypothetical-protein
MVLQRRASFHAHKGRCSTLNCCMFLSLNRHDSRKHAGAQCPAWHVSGPPAPPVNQCEQPPKFAGGVASYGTVAQLH
>NZ_CP029231.1|WP_014327823.1|830185_831685_-|replicative-DNA-helicase
MNDAARKLAPLPKDQADQHYREAPNNLEAEQALLGAILVNNDAFYRVSDFLKPVHLYEPLHRKIFEVAGEIIRMGKTANPVTVKTFLKADDKVGDLTVAQYLARLAAEAVSIINAEDYGRAIYDLALRRSLITIGEDMVNIAFDAPLDMPPQSQIEDAERRLFELAETGRYDGGFQSFNDAVALAIDMAGQAFERDGHLSGISTGIHSLDGKMGGLQRSDLIILAGRPGMGKTSLATNIAYNIAASYEPEVQPDGSFKARNGGVVGFYSLEMSSEQLATRIISEQTEVSSSKIRRGDISEADFEKLVACSQMMQKVPLYIDQTGGISIAQLAARARRLKRQRGLDVLVVDYVQLMSGSKKSGENRVQEITEITTGLKALGKELNVPIIALSQLSRAVESREDKRPQLSDLRESGSIEQDADVVLFVFREEYYVKNMEPRDELDPKYEEWKMQMERVKGTADVIIAKQRHGPTGTVKLAFQSEFTRFSDLADPSFTQYEH
>NZ_CP029231.1|WP_014327822.1|829673_829979_+|membrane-protein
MTLDLDTFLAIVAMAVATVLTRMAGLLVIRFVAIGPQQKRALEAIPPAVLMAVIAPTALATGPAETLATVATALAAMRLPLLAAVAIGVFVVAVARALIGA
>NZ_CP029231.1|WP_048655341.1|829023_829677_+|AzlC-family-ABC-transporter-permease
MAPLTVAVIPIGLVFGAVAASKGLSSFEATLMSVLVFAGGSQFVAMDIWTHPASWGALAFSALLVNIRHVLMSASIGTKMPAFSGPAKYAAMLLLADEIWAMAEVRAGENRLTPAWYAGLAVPFYCVWVLASLAGAAAGAFLGDPEAIGLDFAFPAVFTVLVMGFWKGRDTGAVLAASATAAVLAHQFLPGVWYIAAGAAAGVAATLVTNRHQEACA
>NZ_CP029231.1|WP_014327820.1|828049_828907_+|AraC-family-transcriptional-regulator
MHTISQEEAIEAMPLKGAEQTRFWRDARFNGMECLSATFITHEFAPHAHDTFSIGAIEAGSQISTIKGERSQTGPGDLYLINPDEVHDGHPGNDGYRYRMIYPSAALFVEILEDITGRPFRGTPCFSRQWLTDTELAAAFRRAHQLLEGKTGALEADEGMFGFLATLFERHGSAIIVPVRTRESSAVHRARDYLLENYSSDIGLDELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVREARTLLRQGWSPADTAYHCGFADQAHFTRHFKARTGVTPGAFRAG
>NZ_CP029231.1|WP_014327819.1|826767_827907_-|alanine-racemase
MHSPEFLAASNRLTIDLTALADNWRAMNERSGKARAAAVLKANAYGIGVAHAAPTLYAAGARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEELFFANDLVPIINSEEQLAVFMAALSERGDHPCVLHVDTGMNRLGLSVEEAIALAHDPARPASFSPVLVMSHLACGDDPRHPMNLYQLQRFREVTAAFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVNGALNPMKPVVTAEARILQLRTIPSGGTASYGASARFARDSRIATVAIGYADGYHRSVSGGGVTLRQATPSGAYGFLHGKKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGPNVAIDEVARAGGTIGYELLTSLGQRYCRTYVGGV
>NZ_CP029231.1|WP_014327818.1|825236_826640_-|DNA-repair-protein-RadA
MAKARTQFVCQNCGTLHSRWAGKCEGCGEWNTIIEEDPTGGIGGGPTRAPKKGRPVALTTLSGEIEDAPRIETGISELDRVTGGGFVRGSALLVGGDPGIGKSTVLMQAAAALSRRKHRVIYVSGEEAIAQVRLRAQRLGAADSDVLLAAETNVEDILATLSEGKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGTAVVLVGHVTKEGQIAGPRVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDRGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPLLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNVAGGYRISEPAADLAVASALVSSLAGLALPADCVYFGEVSLSGAVRPVAHTAQRLKEAEKLGFSQAVLPSATTDLPKNGNGRWSEMESLPDLVARIAGSRRALQQSDEAE
>NZ_CP029231.1|WP_014327826.1|834960_835293_+|four-helix-bundle-copper-binding-protein
MHHIDPKMQECIENCLACYRACLSTAMNHCLEAGGKHTEPDHFRLMMACAEICRTSAHFMLIGTPHHRHVCGECAEICAECAADCERIGGMAECVDACQRCAESCRQMAA
>NZ_CP029231.1|WP_014327827.1|835328_836372_-|NADP-dependent-oxidoreductase
MRYNTLGRTGIKVSEICLGTMTWGSQNTPIEAHGQLDYAFECGVNFIDTAELYPTTPLSAETYGNTERIIGDWLAGRRRRDDVVLATKVAGPGRPYIRNGGPMTPEGIAEALDASLTRLKTDYVDLYQLHWPNRGHYHFRNAWSYDPSRQDKAHVAADLRAILDKLGDLVKAGKIRAIGLSNDTAWGAMKMLDLSEKHGLPRVATVQNEYNLLYRAYDLDLAELSHHEDVGLLAYSPLAAGLLTGKYLDGARPAGSRLSINGDLGGRFTPHQEPAVAAYVALAREHGLDPAQMALAFCLTRPFMASVIIGATSIKQLKTDISAADIALSQDVLNGIRRLHRLYPAPI
>NZ_CP029231.1|WP_014327828.1|836702_837647_+|ACP-S-malonyltransferase
MSIAFTFPGQGSQAVGMGKDLADAFPEAAAVFAEVDDALGEKLSDTIWNGPEETLILTANAQPALMAVSIAVIRVLEARGLDLGSKVSFVAGHSLGEYSALCAAGTFSLADTARLLGIRGNAMQAAVPVGKGAMAAIIGLEHDDVEAVCREASSLGACQIANDNGGGQLVISGEKQAVEKAAALATEKGAKRALMLPVSAPFHSSLMAPAAEAMREALAKVEKRDPVVPVVANVLAAPVSDAGEVARLLVEQVTGQVRWRETVQWFAANDVTTLYEIGSGKVLTGLARRIDKTVNGIAVNTPADIDAALAALLA
>NZ_CP029231.1|WP_014327829.1|837673_838411_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MFDLSGRKALITGASGGIGEEIARMLHAQGAIVGLHGTRVEKLEALANSLGERVQIFPANLSDRAEVKALGEKAETELGGVDILVNNAGITKDGLFVRMSDEDWDNVLEVNLTAVFRLTRELTHPMMRRRFGRIVNITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEGIMAAIPMRRMGSGAEVASAVAYLASNEAGYVTGQTIHVNGGMAMI
>NZ_CP029231.1|WP_003531676.1|838750_838987_+|acyl-carrier-protein
MSDIAERVKKIVIDHLGVDAEKVSEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAADSILTVGDAVKFIEKAQA
>NZ_CP029231.1|WP_037449806.1|839202_840468_+|beta-ketoacyl-ACP-synthase-II
MRRVVITGTGMVSPLGCGTEVSWSRLLAGGNAARKVTEFEVEDLPAKIACRIPFGDGSDGTFHADDWMEPKEQRKVDPFITYAMAAADMALADAGWKPESDEDQISTGVLIGSGIGGLEGIVEGGYTLRDKGPRRLSPFFIPGRLINLASGQVSIRHKLRGPNHSVVTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDDPQKASRPYDADRDGFVMGEGAGIVILEELEHAKARGAKIYAEVVGYGLSGDAFHITAPSEDGDGAYRCMQMALKRAGLTAADVDYINAHGTSTMADTIELGAVERLVGDSASRISMSSTKSAIGHLLGAAGAVEAIFSALAIRDNVAPPTLNLDNPSVETKIDLVPHVARKREINVALSNSFGFGGTNASLVLRRYKAD
>NZ_CP029231.1|WP_037449803.1|840754_841942_+|endolytic-transglycosylase-MltG
MSDSNENSAAQFGRNETGSNGPIIPKSANEALRPERVPEPPKRSRKARSQVVIFLNFLMTVVVFVALAAAGAVYYAMHAYEKPGPLEANQNFIVRSGAGIIEIAEGLERNNIITDSRVFRFVSEAYLDNETLKAGEYEIKAHASMQEIMELLKSGKSILYAVSLPEGLTVKQMFRKLSDDPVLVGDLPADLPAEGTLKPDTYKFTRGTKRAEIVQQMVSAQKALVEQIWEKRDPELPVTSVEEFVTLASIVEKETGRADERPRVASVFINRLEKGMRLQSDPTIIYGIFGGEGKPADRAILKSDLEKETPYNTYLIKGLPPTPIANPGRAALEAVANPSRTPELYFVADGTGGHVFAATLDEHNANVRRWRKLEAEKAAEAAKAPADAATAPEAQ
>NZ_CP029231.1|WP_037449800.1|842146_843034_+|YicC-family-protein
MPLQSMTGFARREGSSGRYRWAWELRSVNGKGLDVRLRLPQGLERFEPDCRRLAPQYFSRGNLQIALSVSGGETAVEAVINRGALDAVLKLREQLGDLVDPTPLRFDTLLSLRGIIDLREPEESETERSARDADIVKGLELSLADLMAMRKDEGTALEKVLLAQVERIEELTATVENDPSRSPSAIAARLAQQVALIMDNASSIDRERLHAEVALLATKADLREEVDRLRSHIAAARELLTKGGPVGRKLDFLAQEFNRESNTICSKSNAAAVSAAGIELKVVIDQFREQVQNLE
>NZ_CP029231.1|WP_037449797.1|843037_843697_+|guanylate-kinase
MKSAAASPIKIARRGLMLVISSPSGAGKSTIARNLLEADPELSISVSVTTRAKRSSEIEGRHYHFKTVREFEALRATDSLLEWAEVHGNFYGTPRDAVEAAMAEGRDMLFDIDWQGAQQLQEKMAGDVVSIFILPPSMAELQSRLHRRAEDTEEVIATRLANSRAEIEHWREYDYIVLNDDLDRAFSSVRAIIEAERLRRDRRPGLFEFVNGLLTENPF
>NZ_CP029231.1|WP_037449794.1|844103_844928_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLDGITVIEVGPGPGGLTRAILALGAKKVVAIERDPRCLPALAEISGHYPGRLDVVEGDALKVDFESLGEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMFQREVALRIVAGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVVHLEPTDNPTPCAVSALEKVTQAAFGQRRKMLRQSLKPLGGEALLGKAGIDPQRRAETLTVEEFCRLANCL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1274319 : 1288407

uncultured_Mediterranean_phage(81.82%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086018602.1\|1274319_1275138_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.0e-32	35.3
WP_014328223.1\|1275130_1275856_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.7e-39	45.2
WP_014328224.1\|1275928_1277038_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-10	33.7
WP_014328225.1\|1277130_1277337_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.8e-08	68.2
WP_014328226.1\|1277414_1278128_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_014328227.1\|1278124_1278967_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.7e-44	41.4
WP_037393416.1\|1279006_1280290_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.2e-102	46.7
WP_037393414.1\|1280315_1281086_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-25	33.6
WP_037393412.1\|1281082_1281736_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-15	34.0
WP_014328231.1\|1281895_1282546_+	hypothetical protein	NA	NA	NA	NA
WP_037393411.1\|1282710_1284252_+	LysM peptidoglycan-binding domain-containing protein	Q8SBN9	Clostridium_phage	5.6e-16	35.9
WP_037393410.1\|1284284_1285160_-	ATP-binding protein	NA	NA	NA	NA
WP_037435264.1\|1285459_1285792_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	38.8
WP_037393390.1\|1285836_1288407_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.3e-53	44.0

DBSCAN-SWA_2

1443638 : 1479472

Sinorhizobium_phage(82.86%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014328363.1\|1443638_1444679_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	2.4e-47	38.7
WP_014328364.1\|1444992_1445841_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014328365.1\|1445828_1446155_-	multidrug transporter	NA	NA	NA	NA
WP_037392795.1\|1446151_1446508_-	multidrug transporter	NA	NA	NA	NA
WP_080579535.1\|1446792_1447038_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_037449049.1\|1447034_1447232_-	hypothetical protein	NA	NA	NA	NA
WP_037449046.1\|1447235_1447607_-	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	1.7e-43	65.0
WP_037449043.1\|1447603_1448143_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	1.3e-23	42.3
WP_037449040.1\|1448139_1448772_-	hypothetical protein	A0A219YFC7	Ochrobactrum_phage	2.0e-49	52.0
WP_037449037.1\|1448768_1449077_-	hypothetical protein	NA	NA	NA	NA
WP_037449035.1\|1449073_1450183_-	phage Gp37/Gp68 family protein	A0A291AUR0	Sinorhizobium_phage	7.8e-113	54.9
WP_050991498.1\|1450175_1450781_-	hypothetical protein	A0A291AUC8	Sinorhizobium_phage	3.1e-95	84.4
WP_050991497.1\|1450773_1450992_-	hypothetical protein	A0A291AUC9	Sinorhizobium_phage	5.2e-13	65.5
WP_037449032.1\|1451096_1451585_-	hypothetical protein	NA	NA	NA	NA
WP_037449029.1\|1451581_1451884_-	hypothetical protein	A0A291AUJ8	Sinorhizobium_phage	1.2e-12	42.9
WP_037449085.1\|1451894_1452146_-	hypothetical protein	NA	NA	NA	NA
WP_050991496.1\|1452645_1452900_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_050988296.1\|1453265_1453652_-	hypothetical protein	NA	NA	NA	NA
WP_037449026.1\|1453738_1453987_+	hypothetical protein	A0A0A8IN86	Aurantimonas_phage	3.7e-07	39.4
WP_037449023.1\|1454217_1454715_+	hypothetical protein	A0A291AUJ7	Sinorhizobium_phage	3.0e-72	88.8
WP_050991495.1\|1454714_1454957_+	hypothetical protein	NA	NA	NA	NA
WP_157784509.1\|1455151_1456003_+	hypothetical protein	NA	NA	NA	NA
WP_080579537.1\|1456020_1456362_+	DUF2312 domain-containing protein	Q8W6H2	Sinorhizobium_phage	9.4e-25	65.5
WP_037449020.1\|1459158_1460286_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	3.0e-27	31.0
WP_037449016.1\|1460282_1460603_+	hypothetical protein	A0A291AUT2	Sinorhizobium_phage	9.4e-19	58.9
WP_037449013.1\|1460580_1460790_+	hypothetical protein	NA	NA	NA	NA
WP_050991500.1\|1460801_1462088_+	helix-turn-helix domain-containing protein	A0A068CE61	Rhizobium_phage	5.2e-76	41.7
WP_037449068.1\|1462071_1462719_+	antitermination protein NusG	A0A291AUL3	Sinorhizobium_phage	4.5e-76	64.0
WP_157784508.1\|1462921_1463704_+	hypothetical protein	A0A291AUT0	Sinorhizobium_phage	2.6e-126	86.3
WP_050991493.1\|1463874_1464531_+	hypothetical protein	A0A291AUT3	Sinorhizobium_phage	5.7e-95	78.9
WP_109023313.1\|1464523_1466122_+	hypothetical protein	A0A291AUS9	Sinorhizobium_phage	5.6e-261	78.2
WP_109023314.1\|1465866_1466646_+	hypothetical protein	A0A291AUS9	Sinorhizobium_phage	2.0e-75	76.4
WP_037449003.1\|1466646_1466871_+	hypothetical protein	A0A291AUT6	Sinorhizobium_phage	9.5e-26	82.4
WP_050991492.1\|1466867_1468433_+\|portal	phage portal protein	A0A291AUT1	Sinorhizobium_phage	1.1e-210	77.5
WP_037449001.1\|1468429_1469791_+	S49 family peptidase	A0A291AUT8	Sinorhizobium_phage	6.3e-197	78.6
WP_037448998.1\|1469826_1470066_+	hypothetical protein	M4MB75	Vibrio_phage	3.3e-08	57.9
WP_037448997.1\|1470132_1470558_+	hypothetical protein	A0A291AUU1	Sinorhizobium_phage	9.4e-67	93.6
WP_037448995.1\|1470625_1471558_+	hypothetical protein	A0A291AUU5	Sinorhizobium_phage	1.8e-134	76.1
WP_157784507.1\|1471631_1472096_+	hypothetical protein	A0A291AUU4	Sinorhizobium_phage	1.7e-24	48.8
WP_157784506.1\|1472098_1472431_+	hypothetical protein	A0A291AUT4	Sinorhizobium_phage	2.5e-38	70.0
WP_037448987.1\|1472433_1472874_+	hypothetical protein	A0A291AUT7	Sinorhizobium_phage	3.9e-55	75.0
WP_037448984.1\|1472883_1473276_+	hypothetical protein	A0A291AUU2	Sinorhizobium_phage	2.1e-60	87.6
WP_037448981.1\|1473275_1473650_+	hypothetical protein	A0A291AUT9	Sinorhizobium_phage	1.2e-44	69.7
WP_037448978.1\|1473821_1475600_+	hypothetical protein	A0A291AUU3	Sinorhizobium_phage	1.2e-200	69.4
WP_080579536.1\|1475617_1476322_+	hypothetical protein	A0A291AUU7	Sinorhizobium_phage	3.8e-105	76.5
WP_037448972.1\|1476337_1476922_+	hypothetical protein	A0A291AUU9	Sinorhizobium_phage	6.4e-106	93.3
WP_037448969.1\|1476911_1477313_+	hypothetical protein	A0A291AUV2	Sinorhizobium_phage	4.4e-50	71.9
WP_037448966.1\|1477309_1479472_+	hypothetical protein	A0A291AUU6	Sinorhizobium_phage	0.0e+00	74.3

DBSCAN-SWA_3

1602283 : 1611533

Klosneuvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014328461.1\|1602283_1603834_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.3e-101	37.8
WP_014328462.1\|1604010_1604316_+	pyrophosphatase	NA	NA	NA	NA
WP_014328463.1\|1604310_1605342_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	1.8e-10	29.4
WP_037396478.1\|1605338_1606040_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.9e-36	39.0
WP_014328465.1\|1606096_1607251_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	9.2e-48	34.5
WP_037396470.1\|1607317_1608349_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.4e-17	51.1
WP_037396481.1\|1608646_1608976_+	hypothetical protein	NA	NA	NA	NA
WP_037396473.1\|1609370_1609685_-	DUF1476 family protein	NA	NA	NA	NA
WP_012708153.1\|1609909_1610674_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.1e-44	43.5
WP_012708154.1\|1610709_1610952_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_037396499.1\|1610975_1611533_+	RNA 2'-phosphotransferase	A0A2H4UTN1	Bodo_saltans_virus	6.0e-29	42.0

DBSCAN-SWA_4

1884708 : 1956326

Sulfitobacter_phage(38.46%)

tail,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014330937.1\|1884708_1886346_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_100209413.1\|1886339_1886954_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330935.1\|1886983_1887274_+	hypothetical protein	NA	NA	NA	NA
WP_014328774.1\|1888153_1889512_-\|tail	tail fiber domain-containing protein	M4NM77	Sulfitobacter_phage	2.6e-41	33.1
WP_014328775.1\|1889571_1890024_-	GNAT family N-acetyltransferase	X2CY06	Brucella_phage	4.9e-37	53.6
WP_037435746.1\|1890020_1891631_-	hypothetical protein	A0A088F6U1	Sulfitobacter_phage	3.6e-82	38.1
WP_014328778.1\|1892230_1892827_-	hypothetical protein	A0A2K9VHC9	Pseudomonas_phage	5.7e-09	25.4
WP_014328779.1\|1892823_1893147_-	hypothetical protein	F8TUS1	EBPR_podovirus	3.7e-23	49.5
WP_014328781.1\|1893386_1894382_-	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	4.4e-131	71.9
WP_014328782.1\|1894543_1895497_-	hypothetical protein	A0A088F6W8	Sulfitobacter_phage	3.3e-35	38.5
WP_014328783.1\|1895656_1895893_-	hypothetical protein	NA	NA	NA	NA
WP_014328784.1\|1896441_1898496_-\|portal	phage portal protein	A0A088F830	Sulfitobacter_phage	6.6e-198	58.7
WP_014328786.1\|1900101_1900443_+	GFA family protein	NA	NA	NA	NA
WP_014328787.1\|1900587_1900743_-	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_014328788.1\|1901065_1901470_+	hypothetical protein	NA	NA	NA	NA
WP_080577610.1\|1902105_1902555_+	hypothetical protein	NA	NA	NA	NA
WP_014328791.1\|1902681_1903122_+	hypothetical protein	NA	NA	NA	NA
WP_012708439.1\|1904187_1904460_+	hypothetical protein	NA	NA	NA	NA
WP_014328794.1\|1904666_1904846_+	hypothetical protein	NA	NA	NA	NA
WP_080579515.1\|1904874_1905279_-	BA14K family protein	NA	NA	NA	NA
WP_014328799.1\|1906348_1907746_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_080579514.1\|1908440_1909196_-	hypothetical protein	NA	NA	NA	NA
WP_014328802.1\|1909210_1909930_+	helix-turn-helix transcriptional regulator	A0A141GF24	Brucella_phage	4.3e-11	47.2
WP_014328803.1\|1910103_1910430_+	hypothetical protein	A0A076GCZ5	Sinorhizobium_phage	7.3e-19	61.4
WP_037397205.1\|1910426_1910705_+	hypothetical protein	NA	NA	NA	NA
WP_080579513.1\|1910712_1911234_+	hypothetical protein	NA	NA	NA	NA
WP_014328806.1\|1911247_1912000_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_080579516.1\|1912143_1913136_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_080579512.1\|1913264_1914209_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014328809.1\|1914446_1915217_-	nodulation protein	NA	NA	NA	NA
WP_037448330.1\|1915766_1916684_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_037448328.1\|1916911_1917640_-	DNA mismatch repair protein MutT	NA	NA	NA	NA
WP_037448325.1\|1917641_1918748_-	endonuclease	NA	NA	NA	NA
WP_014328813.1\|1918965_1919409_-	TIGR02594 family protein	NA	NA	NA	NA
WP_037448323.1\|1920085_1920661_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_141321965.1\|1920874_1921087_-	DUF1176 domain-containing protein	NA	NA	NA	NA
WP_037448321.1\|1921976_1924946_-	hemolysin	NA	NA	NA	NA
WP_037448319.1\|1925076_1927992_-	calcium-binding protein	NA	NA	NA	NA
WP_080577603.1\|1928093_1928300_+	hypothetical protein	NA	NA	NA	NA
WP_109023324.1\|1928495_1930520_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014328821.1\|1930998_1932123_+	hypothetical protein	NA	NA	NA	NA
WP_014328822.1\|1932169_1932472_-	hypothetical protein	NA	NA	NA	NA
WP_100209366.1\|1932544_1932910_-	hypothetical protein	NA	NA	NA	NA
WP_157750304.1\|1933038_1933545_-	hypothetical protein	NA	NA	NA	NA
WP_080577612.1\|1933591_1934761_+	hypothetical protein	NA	NA	NA	NA
WP_037397179.1\|1936956_1937625_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_014328827.1\|1937702_1938845_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_014328828.1\|1939100_1940441_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_014328829.1\|1940666_1942439_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014328830.1\|1942861_1943899_-	cell division protein FtsZ	NA	NA	NA	NA
WP_014328831.1\|1944213_1944408_+	hypothetical protein	NA	NA	NA	NA
WP_037448307.1\|1944438_1946151_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_037397160.1\|1946338_1946947_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_037448298.1\|1948348_1950382_-	iron ABC transporter permease	NA	NA	NA	NA
WP_037448296.1\|1950389_1951370_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_037448294.1\|1951553_1953866_-	SIR2 family protein	NA	NA	NA	NA
WP_037448292.1\|1953935_1955528_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.8e-54	32.6
WP_037448290.1\|1955601_1955946_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.1e-09	30.6
WP_100209418.1\|1955942_1956326_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2318395 : 2374232

Paenibacillus_phage(16.67%)

protease,tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037437113.1\|2318395_2319115_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_037400814.1\|2319298_2319511_-	hypothetical protein	NA	NA	NA	NA
WP_109023335.1\|2319590_2322620_-	calcium-binding protein	NA	NA	NA	NA
WP_037447792.1\|2322883_2325922_-	hypothetical protein	NA	NA	NA	NA
WP_037447789.1\|2326476_2327577_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012708843.1\|2327632_2327944_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_037447786.1\|2328120_2329224_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_014329133.1\|2329263_2329719_+	MaoC family dehydratase	NA	NA	NA	NA
WP_014329134.1\|2329715_2330186_+	MaoC family dehydratase	NA	NA	NA	NA
WP_014328393.1\|2330563_2331586_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086021277.1\|2331688_2332448_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.2e-25	43.9
WP_037400797.1\|2332462_2333005_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.2e-36	44.8
WP_012708848.1\|2333302_2333488_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_014329136.1\|2333503_2334763_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	3.6e-53	43.4
WP_014329137.1\|2334759_2335392_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_014329138.1\|2335388_2336012_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_037400794.1\|2336278_2337292_+	MoxR family ATPase	NA	NA	NA	NA
WP_014329140.1\|2337295_2338216_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_014329141.1\|2338212_2341026_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_037447768.1\|2341033_2343103_+	membrane protein	NA	NA	NA	NA
WP_037447765.1\|2343577_2344138_-	N-acetyltransferase	NA	NA	NA	NA
WP_037447762.1\|2344393_2345371_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_037447758.1\|2345375_2345864_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_014329147.1\|2346357_2347266_+	metallophosphoesterase	NA	NA	NA	NA
WP_037447740.1\|2347437_2347983_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014329149.1\|2348162_2348681_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_037447737.1\|2348684_2349512_+	anti-sigma factor	NA	NA	NA	NA
WP_037447733.1\|2349711_2351421_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_037447748.1\|2351848_2352436_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.3e-29	37.3
WP_014329154.1\|2352667_2353246_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_014329155.1\|2353397_2353862_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.0e-29	48.6
WP_014329156.1\|2353891_2354809_-	cation transporter	NA	NA	NA	NA
WP_014329157.1\|2354988_2357178_-	anthranilate synthase	NA	NA	NA	NA
WP_037447730.1\|2357470_2359576_-	TonB-dependent receptor	NA	NA	NA	NA
WP_037428990.1\|2359837_2360653_+	extensin	NA	NA	NA	NA
WP_037447727.1\|2360653_2361112_-	thioesterase	NA	NA	NA	NA
WP_037447725.1\|2361266_2361776_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_037428995.1\|2361797_2363477_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_037447722.1\|2363564_2364785_-	DUF2333 family protein	NA	NA	NA	NA
WP_037396098.1\|2364788_2366078_-	hypothetical protein	NA	NA	NA	NA
WP_014329165.1\|2366270_2366678_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_037429004.1\|2368863_2370012_-	hypothetical protein	NA	NA	NA	NA
WP_037396079.1\|2370073_2371162_-	hypothetical protein	NA	NA	NA	NA
WP_014329169.1\|2371376_2371964_-	thymidine kinase	A0A1Z1LYD5	Serratia_phage	9.1e-52	53.2
WP_037447718.1\|2372247_2373204_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_037396090.1\|2373386_2374232_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029233

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 66432

Burkholderia_phage(15.38%)

integrase,transposase

attL 30063:30122|attR 62613:63745

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014858028.1\|1242_2223_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	7.5e-59	39.1
WP_014858027.1\|2377_3592_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.2e-15	26.2
WP_158499791.1\|5738_6314_+	hypothetical protein	NA	NA	NA	NA
WP_034859522.1\|6313_6520_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-10	47.1
WP_015633599.1\|6667_7585_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	5.6e-32	51.7
WP_158499787.1\|8461_8812_+	hypothetical protein	NA	NA	NA	NA
WP_014330933.1\|8595_9267_-	hypothetical protein	NA	NA	NA	NA
WP_014330219.1\|9487_10405_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.4e-06	25.1
WP_014330217.1\|12047_12644_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-39	49.5
WP_014330934.1\|13114_14110_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014330935.1\|14118_14409_-	hypothetical protein	NA	NA	NA	NA
WP_100209413.1\|14438_15053_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330937.1\|15046_16684_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_014330938.1\|16729_17077_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_014330939.1\|17073_17466_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014857770.1\|17874_19113_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014857769.1\|19131_20736_-	hypothetical protein	NA	NA	NA	NA
WP_100209377.1\|20766_21663_-	agmatinase family protein	NA	NA	NA	NA
WP_014857767.1\|21714_22911_-	radical SAM protein	NA	NA	NA	NA
WP_014857764.1\|24116_27620_-	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|27741_28821_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_034859931.1\|29136_29709_+	hypothetical protein	NA	NA	NA	NA
30063:30122	attL	NA	NA	NA	NA
WP_085939171.1\|30082_31143_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_037437088.1\|31545_32721_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_014857771.1\|32730_33600_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-33	34.3
WP_015633366.1\|35099_36797_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_015633367.1\|37083_37356_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_037457247.1\|37355_37916_+	cytochrome b561	NA	NA	NA	NA
WP_014858088.1\|37930_38605_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-19	28.3
WP_015633368.1\|38853_39105_-	WGR domain-containing protein	NA	NA	NA	NA
WP_015633369.1\|39406_39901_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_153458762.1\|40018_40279_+	hypothetical protein	NA	NA	NA	NA
WP_015633371.1\|40516_40957_-	hypothetical protein	NA	NA	NA	NA
WP_034859607.1\|40949_41663_-	ParA family protein	A0A2H4JGZ2	uncultured_Caudovirales_phage	8.0e-10	27.6
WP_034859608.1\|42307_42709_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_034859609.1\|42712_45214_+	hypothetical protein	NA	NA	NA	NA
WP_034859612.1\|45219_45432_+	hypothetical protein	NA	NA	NA	NA
WP_034859614.1\|45764_46205_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_014329692.1\|46201_46633_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_109023434.1\|46746_47463_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_050991653.1\|47736_48393_+	hypothetical protein	NA	NA	NA	NA
WP_034859668.1\|51618_52944_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.4e-29	30.5
WP_014330950.1\|53134_53440_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_014857518.1\|53439_53790_-\|transposase	transposase	NA	NA	NA	NA
WP_034859669.1\|54207_54387_-	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|55139_55856_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014330959.1\|60488_61094_-	DUF1419 domain-containing protein	NA	NA	NA	NA
WP_085939171.1\|61591_62651_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014330962.1\|62652_63351_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_014330963.1\|63347_63557_-	hypothetical protein	NA	NA	NA	NA
WP_100209375.1\|63991_64969_-	AraC family transcriptional regulator	NA	NA	NA	NA
62613:63745	attR	NA	NA	NA	NA
WP_014330966.1\|65035_65236_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_014857732.1\|65628_66432_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-30	37.9

DBSCAN-SWA_2

73666 : 165066

Stx2-converting_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014330974.1\|73666_74560_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.3e-21	28.2
WP_100209376.1\|74758_75682_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014330978.1\|76638_76839_-	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|76822_77539_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014330979.1\|77888_79634_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_014857719.1\|81132_81618_+	NTPase KAP	NA	NA	NA	NA
WP_014857718.1\|81643_82012_-	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|83343_84060_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_015633430.1\|84414_85386_-	hypothetical protein	NA	NA	NA	NA
WP_015633429.1\|85473_86445_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014328393.1\|86861_87884_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_083846302.1\|89786_90770_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014328473.1\|90868_91789_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-29	34.3
WP_014331811.1\|91785_93300_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_015633423.1\|99420_99867_-	hypothetical protein	NA	NA	NA	NA
WP_015633422.1\|99863_100124_-	hypothetical protein	NA	NA	NA	NA
WP_015633421.1\|101014_101821_+	hypothetical protein	NA	NA	NA	NA
WP_034859947.1\|103264_103729_+	phasin	NA	NA	NA	NA
WP_014857788.1\|104958_107139_-	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	1.1e-41	32.8
WP_014328799.1\|111335_112733_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_153297037.1\|113769_114075_+	hypothetical protein	NA	NA	NA	NA
WP_080579325.1\|115560_116253_+	hypothetical protein	NA	NA	NA	NA
WP_041409929.1\|116774_118319_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_085939171.1\|118408_119468_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_100209425.1\|122059_122410_+	hypothetical protein	NA	NA	NA	NA
WP_014857794.1\|122489_123347_+	hypothetical protein	NA	NA	NA	NA
WP_015633362.1\|123440_123719_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014857792.1\|123715_124243_+	hypothetical protein	NA	NA	NA	NA
WP_037403046.1\|124366_126214_-	AAA family ATPase	NA	NA	NA	NA
WP_015633363.1\|126213_126702_-	hypothetical protein	NA	NA	NA	NA
WP_014857789.1\|126689_127721_-	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|127799_128879_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_085939171.1\|129252_130313_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_080582764.1\|130507_131368_-	hypothetical protein	NA	NA	NA	NA
WP_014857716.1\|131369_132251_-	AAA family ATPase	NA	NA	NA	NA
WP_015633573.1\|134018_134165_+	family 16 glycosylhydrolase	NA	NA	NA	NA
WP_014328799.1\|135112_136510_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_014857807.1\|137304_138456_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_037456790.1\|138855_139299_+	hypothetical protein	NA	NA	NA	NA
WP_014330939.1\|139362_139755_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014330938.1\|139751_140099_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_014330937.1\|140144_141782_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_100209413.1\|141775_142390_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330935.1\|142419_142710_+	hypothetical protein	NA	NA	NA	NA
WP_034859923.1\|142748_143900_+	carbamoyltransferase	E3SK81	Synechococcus_phage	5.4e-24	34.8
WP_014327878.1\|145062_145896_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014858061.1\|147651_148101_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	5.2e-07	40.4
WP_015633495.1\|148081_148435_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.5e-20	48.4
WP_085939171.1\|149555_150615_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014858057.1\|153071_154283_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_014858053.1\|155866_156610_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014328799.1\|158490_159888_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_014858072.1\|160205_160985_+	radical SAM protein	NA	NA	NA	NA
WP_015633488.1\|161392_161983_+	nodulation N-acyltransferase NodA	NA	NA	NA	NA
WP_010875356.1\|161979_162627_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_014858070.1\|162641_163883_+	chitooligosaccharide synthase NodC	M1HPL2	Paramecium_bursaria_Chlorella_virus	2.5e-11	26.7
WP_015633486.1\|164034_165066_+	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	9.4e-28	29.5

DBSCAN-SWA_3

168183 : 168909

Tetraselmis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014858065.1\|168183_168909_+	2-O-methyltransferase NoeI	A0A2P0VP97	Tetraselmis_virus	3.3e-11	28.3

DBSCAN-SWA_4

173449 : 234454

Stx2-converting_phage(40.0%)

integrase,transposase

attL 193212:193271|attR 223739:224677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037446536.1\|173449_174529_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_109023435.1\|174896_176261_+	cytochrome P450	NA	NA	NA	NA
WP_034859623.1\|176206_176515_+	ferredoxin	NA	NA	NA	NA
WP_034859625.1\|177866_178847_+	farnesyl-diphosphate synthase	NA	NA	NA	NA
WP_014857759.1\|178982_180533_+	hypothetical protein	NA	NA	NA	NA
WP_014857758.1\|180529_181432_+	hypothetical protein	NA	NA	NA	NA
WP_015633476.1\|181517_182567_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_015633473.1\|183853_184855_+\|integrase	site-specific integrase	S5M9V8	Brevibacillus_phage	4.1e-12	23.6
WP_014327878.1\|186684_187518_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014858092.1\|188299_188704_+	hypothetical protein	NA	NA	NA	NA
WP_014330863.1\|189446_189680_+	hypothetical protein	NA	NA	NA	NA
WP_014330862.1\|189660_191361_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_080577875.1\|191406_191745_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330860.1\|191756_192128_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_034859935.1\|192206_193037_+	glycoside hydrolase family 16 protein	M1HRU7	Paramecium_bursaria_Chlorella_virus	1.0e-16	26.3
193212:193271	attL	NA	NA	NA	NA
WP_014327878.1\|193292_194126_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_034859708.1\|194145_194631_-	hypothetical protein	NA	NA	NA	NA
WP_014858080.1\|195351_196389_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.9e-13	43.0
WP_014328393.1\|200912_201935_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015633467.1\|202087_202351_-	hypothetical protein	NA	NA	NA	NA
WP_014330935.1\|204297_204588_-	hypothetical protein	NA	NA	NA	NA
WP_100209413.1\|204617_205232_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330937.1\|205225_206863_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_014330938.1\|206908_207256_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_014330939.1\|207252_207645_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014857776.1\|207694_207862_-	hypothetical protein	NA	NA	NA	NA
WP_014857771.1\|208961_209831_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-33	34.3
WP_037437088.1\|209840_211016_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_086018849.1\|211414_212368_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014857748.1\|212432_214544_-	hypothetical protein	NA	NA	NA	NA
WP_014857747.1\|214592_216383_-	hypothetical protein	NA	NA	NA	NA
WP_014857746.1\|216435_216834_-	hypothetical protein	NA	NA	NA	NA
WP_014857744.1\|217070_217985_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014328473.1\|218848_219769_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-29	34.3
WP_014331811.1\|219765_221280_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_080577877.1\|222264_223680_-	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA
WP_014327878.1\|223819_224653_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_037462953.1\|224792_225170_-	hypothetical protein	NA	NA	NA	NA
223739:224677	attR	NA	NA	NA	NA
WP_014857676.1\|225809_226262_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA
WP_014857675.1\|226425_227589_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	9.6e-37	36.4
WP_015633453.1\|228586_230455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014857671.1\|230778_231150_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_014857667.1\|233325_233550_+	hypothetical protein	NA	NA	NA	NA
WP_014327878.1\|233620_234454_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

245388 : 246949

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857651.1\|245388_245709_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	2.9e-12	37.6
WP_014857650.1\|246382_246949_-	peroxiredoxin	M1TUY3	Synechococcus_phage	9.1e-49	54.0

DBSCAN-SWA_6

251746 : 253393

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034859517.1\|251746_253393_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.7e-15	35.5

DBSCAN-SWA_7

266398 : 270191

Acanthamoeba_polyphaga_moumouvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857633.1\|266398_267937_+	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	1.2e-23	29.3
WP_014857632.1\|267933_269277_+	insulinase family protein	G3MBJ8	Bacillus_virus	7.7e-14	22.2
WP_014857631.1\|269759_270191_+	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	4.8e-26	47.1

DBSCAN-SWA_8

275712 : 308838

Stx2-converting_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041415762.1\|275712_276792_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014857619.1\|279005_279263_-	hypothetical protein	A0A2I7REY7	Vibrio_phage	4.9e-10	49.2
WP_048655403.1\|279725_281294_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_080577876.1\|281555_281774_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	2.4e-10	51.4
WP_078070821.1\|282323_282506_+	hypothetical protein	NA	NA	NA	NA
WP_034859779.1\|283227_284778_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.2e-113	46.1
WP_014330860.1\|285475_285847_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080577875.1\|285858_286197_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330862.1\|286242_287943_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_014330863.1\|287923_288157_-	hypothetical protein	NA	NA	NA	NA
WP_085939171.1\|289599_290660_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_048655401.1\|290992_291457_+	hypothetical protein	NA	NA	NA	NA
WP_015633375.1\|291482_291953_+	hypothetical protein	NA	NA	NA	NA
WP_109023438.1\|294002_295062_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015633378.1\|295117_295483_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015633379.1\|295479_296349_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	2.8e-25	29.3
WP_014857614.1\|298986_299997_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_014857613.1\|300203_300749_-	hypothetical protein	NA	NA	NA	NA
WP_080577842.1\|300748_301072_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014857607.1\|303234_303852_-	hypothetical protein	NA	NA	NA	NA
WP_014857606.1\|303982_304429_-\|transposase	transposase	NA	NA	NA	NA
WP_015633385.1\|304574_305006_-	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	2.9e-23	46.3
WP_014857603.1\|305605_306571_-	transcriptional regulator NodD1	NA	NA	NA	NA
WP_015633387.1\|307299_308838_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.1e-51	28.0

DBSCAN-SWA_9

311843 : 313852

Acanthocystis_turfacea_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857595.1\|311843_312899_+	GDP-mannose 4,6-dehydratase	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	4.5e-126	64.3
WP_014857594.1\|312907_313852_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	3.6e-90	50.6

DBSCAN-SWA_10

327152 : 387198

uncultured_virus(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014330283.1\|327152_327614_-	Hsp20 family protein	C7BV44	Synechococcus_phage	5.2e-18	37.4
WP_014330282.1\|327977_328292_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.1e-22	60.9
WP_014330281.1\|328346_329975_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.3e-177	60.7
WP_080579830.1\|330120_331512_+\|protease	DegQ family serine endoprotease	NA	NA	NA	NA
WP_014330279.1\|331567_331879_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_014330278.1\|331899_332232_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_014330914.1\|332236_332443_+	hypothetical protein	NA	NA	NA	NA
WP_034859270.1\|332685_333330_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	6.3e-14	33.3
WP_014330276.1\|333426_336324_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.8e-184	37.8
WP_014857579.1\|338151_338367_-	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|338773_339853_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_034859779.1\|341860_343411_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.2e-113	46.1
WP_014330860.1\|343977_344349_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080577875.1\|344360_344699_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330862.1\|344744_346445_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_014330863.1\|346425_346659_-	hypothetical protein	NA	NA	NA	NA
WP_015633401.1\|347654_348203_-	hypothetical protein	NA	NA	NA	NA
WP_014857573.1\|348219_350313_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_014857572.1\|350501_351392_-	hypothetical protein	NA	NA	NA	NA
WP_034859385.1\|351498_351714_-	nodulation protein NopA	NA	NA	NA	NA
WP_010875097.1\|351784_352081_-	nodulation protein NopC	NA	NA	NA	NA
WP_037457110.1\|352782_353595_-	effector protein NopP	NA	NA	NA	NA
WP_014857567.1\|354390_355428_-	translocation protein	NA	NA	NA	NA
WP_034859387.1\|355424_356243_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_010875101.1\|356251_356527_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_014857564.1\|356526_357195_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_080577801.1\|357187_358264_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA
WP_014857562.1\|358289_358826_-	hypothetical protein	NA	NA	NA	NA
WP_015633405.1\|358801_360157_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA
WP_014857560.1\|360153_360780_-	nodulation protein NolV	NA	NA	NA	NA
WP_015633406.1\|360781_361420_-	nodulation protein NolU	NA	NA	NA	NA
WP_014857558.1\|361416_362286_-	nodulation protein NolT	NA	NA	NA	NA
WP_014857557.1\|362295_362790_-	nodulation protein NolB	NA	NA	NA	NA
WP_032490256.1\|362945_363650_+	nodulation protein NolW	NA	NA	NA	NA
WP_014857555.1\|363931_365722_+	type II secretion system effector nodulation protein NopX	NA	NA	NA	NA
WP_078070819.1\|365870_366335_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_014857550.1\|367686_368697_+	cysteine synthase family protein	NA	NA	NA	NA
WP_014857549.1\|368693_369833_+	hypothetical protein	NA	NA	NA	NA
WP_014857548.1\|369832_371719_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
WP_014857547.1\|371715_372930_+	MFS transporter	NA	NA	NA	NA
WP_014857546.1\|373187_374204_+	type II secretion system effector nodulation protein NopL	NA	NA	NA	NA
WP_014328393.1\|374753_375776_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014857545.1\|375994_376561_-	hypothetical protein	NA	NA	NA	NA
WP_078070767.1\|376570_377842_-	type II and III secretion system protein family protein	NA	NA	NA	NA
WP_014857543.1\|378021_378702_-	response regulator	W8CYM9	Bacillus_phage	3.8e-17	26.5
WP_014857541.1\|379870_380077_-	hypothetical protein	NA	NA	NA	NA
WP_014857540.1\|380396_381335_+	transcriptional regulator NodD2	NA	NA	NA	NA
WP_086018076.1\|382279_383469_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.0e-51	43.3
WP_014857536.1\|384459_385203_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.5e-56	46.1
WP_014327878.1\|386364_387198_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP029235

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4740 : 87642

Burkholderia_phage(22.22%)

transposase,tRNA,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037456609.1\|4740_5916_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_037456648.1\|5984_6263_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_037456613.1\|6249_6681_+	mRNA interferase PemK	NA	NA	NA	NA
WP_158499787.1\|7273_7624_+	hypothetical protein	NA	NA	NA	NA
WP_014330933.1\|7407_8079_-	hypothetical protein	NA	NA	NA	NA
WP_014330219.1\|8299_9217_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.4e-06	25.1
WP_014330217.1\|10860_11457_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-39	49.5
WP_085939171.1\|11749_12810_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014330214.1\|12892_14251_-\|transposase	ISKra4-like element ISSfr3 family transposase	NA	NA	NA	NA
WP_037457133.1\|14759_16709_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003532611.1\|16736_17129_+	hypothetical protein	NA	NA	NA	NA
WP_014330212.1\|17192_18803_+	tyrosinase family protein	NA	NA	NA	NA
WP_037457137.1\|18933_19263_+	hypothetical protein	NA	NA	NA	NA
WP_037457139.1\|19801_20632_-	oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.9e-05	22.2
WP_014330209.1\|20786_22007_-	hypothetical protein	NA	NA	NA	NA
WP_014330208.1\|22063_23449_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_014330207.1\|23731_25123_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_014330206.1\|25161_26691_+	membrane protein	NA	NA	NA	NA
WP_014330205.1\|26687_27119_+	hypothetical protein	NA	NA	NA	NA
WP_014330204.1\|27115_28600_+	cytochrome c	NA	NA	NA	NA
WP_014330203.1\|28622_31397_+	cytochrome c	NA	NA	NA	NA
WP_037457145.1\|31399_33202_+	FAD-binding protein	A0A1V0SI18	Klosneuvirus	4.3e-36	28.1
WP_109023440.1\|36763_37927_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_003532643.1\|39156_39453_-	hypothetical protein	NA	NA	NA	NA
WP_014330197.1\|39502_39727_-	hypothetical protein	NA	NA	NA	NA
WP_003532639.1\|39853_40063_-	cold-shock protein	A0A218MMZ6	uncultured_virus	1.2e-09	52.8
WP_080579793.1\|41788_42253_+	hypothetical protein	NA	NA	NA	NA
WP_086023320.1\|43607_43775_-	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|43824_44541_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_080579795.1\|44744_44927_-	protein usg	NA	NA	NA	NA
WP_037456347.1\|44944_45232_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_037456350.1\|45825_46188_-	SPW repeat protein	NA	NA	NA	NA
WP_014330926.1\|46914_47217_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_109023441.1\|47828_48149_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_037456357.1\|48893_49979_+	AAA family ATPase	M4QMW8	Micromonas_pusilla_virus	2.3e-16	35.3
WP_014330863.1\|51228_51462_+	hypothetical protein	NA	NA	NA	NA
WP_014330862.1\|51442_53143_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_080577875.1\|53188_53527_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330860.1\|53538_53910_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_050991633.1\|54010_55165_+	S8 family serine peptidase	NA	NA	NA	NA
WP_037456362.1\|55719_57057_-	adenylosuccinate lyase family protein	NA	NA	NA	NA
WP_037456364.1\|57137_58109_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_050991632.1\|58277_59369_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_037456366.1\|59424_59901_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_037456369.1\|59911_61414_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_037456384.1\|61597_62494_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_037456390.1\|62642_63698_-	nitronate monooxygenase	NA	NA	NA	NA
WP_109023442.1\|64026_73209_-	hypothetical protein	NA	NA	NA	NA
WP_109023443.1\|73208_73805_-	hypothetical protein	NA	NA	NA	NA
WP_109023444.1\|74062_81820_-	toxin	NA	NA	NA	NA
WP_080579797.1\|82741_83158_-	hypothetical protein	NA	NA	NA	NA
WP_109023448.1\|83373_84270_+	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	2.6e-127	75.0
WP_157784547.1\|84495_84765_-	hypothetical protein	NA	NA	NA	NA
WP_037456425.1\|86254_86857_+	hypothetical protein	NA	NA	NA	NA
WP_037456429.1\|87186_87642_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP029234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5584 : 59509

uncultured_virus(18.18%)

transposase,protease,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857974.1\|5584_5851_-\|integrase	integrase	NA	NA	NA	NA
WP_014857977.1\|7660_8365_-	hypothetical protein	A0A1B1IPD9	uncultured_Mediterranean_phage	1.9e-19	40.6
WP_014857978.1\|8379_11883_-	DEAD/DEAH box helicase	A0A2H4UVG1	Bodo_saltans_virus	1.5e-13	24.0
WP_014857979.1\|11869_12652_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_014857980.1\|12667_13687_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_014857981.1\|13679_14273_-	hypothetical protein	NA	NA	NA	NA
WP_014330276.1\|14455_17353_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.8e-184	37.8
WP_034859270.1\|17449_18094_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	6.3e-14	33.3
WP_014330914.1\|18336_18543_-	hypothetical protein	NA	NA	NA	NA
WP_014330278.1\|18547_18880_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_014330279.1\|18900_19212_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_080579830.1\|19267_20659_-\|protease	DegQ family serine endoprotease	NA	NA	NA	NA
WP_014330281.1\|20804_22433_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.3e-177	60.7
WP_109023439.1\|22504_23265_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.5e-25	43.0
WP_014330282.1\|23333_23648_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.1e-22	60.9
WP_014330283.1\|24011_24473_+	Hsp20 family protein	C7BV44	Synechococcus_phage	5.2e-18	37.4
WP_034859295.1\|24571_25081_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_014330285.1\|25146_25518_+	NADH dehydrogenase	NA	NA	NA	NA
WP_014330287.1\|26010_26292_-	hypothetical protein	NA	NA	NA	NA
WP_014330289.1\|26760_27081_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_015633557.1\|27844_28786_+	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	1.4e-17	40.5
WP_015633558.1\|28870_29137_+	hypothetical protein	NA	NA	NA	NA
WP_014857681.1\|29133_29532_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_014857684.1\|30147_30471_+	DUF736 family protein	NA	NA	NA	NA
WP_014857686.1\|31054_31363_-	WGR domain-containing protein	NA	NA	NA	NA
WP_014857689.1\|32148_34068_-	Ti-type conjugative transfer system protein TraG	NA	NA	NA	NA
WP_014857690.1\|34058_34298_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_015633561.1\|34287_34575_-	hypothetical protein	NA	NA	NA	NA
WP_015633563.1\|34799_39419_+	Ti-type conjugative transfer relaxase TraA	W5S5P4	Pithovirus	7.0e-06	24.2
WP_014857693.1\|39449_39719_+	hypothetical protein	NA	NA	NA	NA
WP_014857694.1\|39721_42196_+	AAA family ATPase	NA	NA	NA	NA
WP_014857695.1\|42230_42563_-	hypothetical protein	NA	NA	NA	NA
WP_015633565.1\|43201_44815_+	hypothetical protein	NA	NA	NA	NA
WP_015633567.1\|46222_47164_+	sensor histidine kinase	NA	NA	NA	NA
WP_015633568.1\|47919_48309_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_015633569.1\|48395_49091_-	VIT family protein	NA	NA	NA	NA
WP_014857705.1\|49653_50040_+	DUF1515 family protein	A0A291AUW4	Sinorhizobium_phage	1.1e-08	54.9
WP_014857707.1\|50953_51304_-	hypothetical protein	NA	NA	NA	NA
WP_014857710.1\|53592_53736_-	hypothetical protein	NA	NA	NA	NA
WP_014328799.1\|54275_55673_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_157783890.1\|56703_56946_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015633503.1\|57358_57907_-	VOC family protein	NA	NA	NA	NA
WP_100209355.1\|58186_59509_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP029232

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

535138 : 542690

Sinorhizobium_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109023394.1\|535138_535492_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.4e-31	54.8
WP_109023395.1\|535537_537238_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-89	40.9
WP_018237844.1\|537218_537452_-	hypothetical protein	NA	NA	NA	NA
WP_080579725.1\|537581_538013_+	hypothetical protein	NA	NA	NA	NA
WP_037454304.1\|538258_538723_+	lysozyme	A0A1L2BWX1	Bacteriophage	2.2e-24	45.9
WP_037454302.1\|538719_539136_+	hypothetical protein	A0A0F6YQP1	Sinorhizobium_phage	6.7e-41	58.5
WP_157784534.1\|539249_539705_-	hypothetical protein	NA	NA	NA	NA
WP_037454296.1\|539921_540371_-	hypothetical protein	NA	NA	NA	NA
WP_037454294.1\|540518_540995_-	hypothetical protein	A0A0F6R5Y6	Sinorhizobium_phage	1.3e-32	46.8
WP_037454291.1\|540998_542690_-	hypothetical protein	A0A0F6TGS7	Sinorhizobium_phage	1.6e-61	48.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029231

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029233

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP029235

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP029234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

5. NZ_CP029232

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection