CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028116	Escherichia coli O26 str. RM8426 chromosome, complete genome	2 crisprs	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	9	22	0
NZ_CP028115	Escherichia coli O26 str. RM8426 plasmid pRM8426, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028116_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028116_1

3728119-3728635

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP028116_1

>merge|NZ_CP028116|1|3728119-3728635|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCTATCAGCGACACTACCGGCAATAGCGACGGTTTATCCCCGCTGGCGCGGGGAACACGAGAGTGCTGACAGGTGTCTCGATTACCTGATCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAGTACGCGCCTCCGGACGTTTTTATGTCGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTCGCGGGTAATCAATGATGATTCAGTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGAACGCAATATCACGGCGTTCTGCGGCCTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAATATTACGAGCTTCGTCAGGCCATGGACCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGGGCCGGGTAAGTGAACCTGTCGGTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028116|1|1|3728119-3728635|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTACGCGCCTCCGGACGTTTTTATGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTCGCGGGTAATCAATGATGATTCAGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028116|1|1|3728119-3728635|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTACGCGCCTCCGGACGTTTTTATGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTCGCGGGTAATCAATGATGATTCAGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028116|1|1|3728119-3728635|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCTATCAGCGACACTACCGGCAATAGCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTACGCGCCTCCGGACGTTTTTATGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTCGCGGGTAATCAATGATGATTCAGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTACGAGCTTCGTCAGGCCATGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028116.1\|WP_000568946.1\|3720673_3721723_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP028116.1\|WP_000085068.1\|3730573_3731320_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP028116.1\|WP_001290688.1\|3738711_3740424_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP028116.1\|WP_000039843.1\|3737903_3738638_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP028116.1\|WP_000206431.1\|3731330_3732386_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP028116.1\|WP_000956458.1\|3737486_3737639_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP028116.1\|WP_000029342.1\|3732397_3732937_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP028116.1\|WP_000490429.1\|3726999_3728037_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP028116.1\|WP_000246138.1\|3722198_3722909_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP028116.1\|WP_001090394.1\|3724410_3725838_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP028116.1\|WP_000517476.1\|3722927_3723239_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP028116.1\|WP_000063176.1\|3728731_3729025_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP028116.1\|WP_001219242.1\|3721719_3722199_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP028116.1\|WP_000372108.1\|3725839_3726748_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP028116.1\|WP_001084096.1\|3732933_3734496_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP028116.1\|WP_001173673.1\|3723805_3724411_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP028116.1\|WP_000144863.1\|3729024_3729945_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028116.1\|WP_001295182.1\|3719931_3720693_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP028116.1\|WP_001246104.1\|3723432_3723756_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP028116.1\|WP_000281440.1\|3729941_3730592_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
NZ_CP028116.1\|WP_000568946.1\|3720673_3721723_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP028116.1\|WP_000085068.1\|3730573_3731320_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
NZ_CP028116.1\|WP_001290688.1\|3738711_3740424_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP028116.1\|WP_000039843.1\|3737903_3738638_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP028116.1\|WP_000206431.1\|3731330_3732386_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
NZ_CP028116.1\|WP_000956458.1\|3737486_3737639_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP028116.1\|WP_000029342.1\|3732397_3732937_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
NZ_CP028116.1\|WP_000490429.1\|3726999_3728037_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP028116.1\|WP_000246138.1\|3722198_3722909_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP028116.1\|WP_001090394.1\|3724410_3725838_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP028116.1\|WP_000517476.1\|3722927_3723239_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP028116.1\|WP_000063176.1\|3728731_3729025_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP028116.1\|WP_001219242.1\|3721719_3722199_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP028116.1\|WP_000372108.1\|3725839_3726748_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP028116.1\|WP_001084096.1\|3732933_3734496_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP028116.1\|WP_001173673.1\|3723805_3724411_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP028116.1\|WP_000144863.1\|3729024_3729945_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
NZ_CP028116.1\|WP_001295182.1\|3719931_3720693_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP028116.1\|WP_001246104.1\|3723432_3723756_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP028116.1\|WP_000281440.1\|3729941_3730592_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.38075e-91

>NZ_CP028116.1|WP_000490429.1|3726999_3728037_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP028116.1|WP_000372108.1|3725839_3726748_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP028116.1|WP_001090394.1|3724410_3725838_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGSKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP028116.1|WP_001173673.1|3723805_3724411_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP028116.1|WP_001246104.1|3723432_3723756_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP028116.1|WP_000517476.1|3722927_3723239_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP028116.1|WP_000246138.1|3722198_3722909_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP028116.1|WP_001219242.1|3721719_3722199_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP028116.1|WP_000568946.1|3720673_3721723_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP028116.1|WP_001295182.1|3719931_3720693_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP028116.1|WP_000063176.1|3728731_3729025_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP028116.1|WP_000144863.1|3729024_3729945_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP028116.1|WP_000281440.1|3729941_3730592_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGPAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP028116.1|WP_000085068.1|3730573_3731320_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP028116.1|WP_000206431.1|3731330_3732386_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP028116.1|WP_000029342.1|3732397_3732937_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP028116.1|WP_001084096.1|3732933_3734496_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP028116.1|WP_000956458.1|3737486_3737639_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP028116.1|WP_000039843.1|3737903_3738638_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP028116.1|WP_001290688.1|3738711_3740424_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDHEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: NZ_CP028116_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028116_2

3754336-3754913

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGA	CRT
CGGTTTATCCCCGCTGGCGCGGGGA	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP028116_2

>merge|NZ_CP028116|2|3754336-3754913|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAGCTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAGCTCTACGTGAAGAATATTTGCAACACCCGCAAGAACGGTTTATCCCCGCTGGCGCGGGGAGCTCGGCATAGCCAGGCTGATCCGGCGACGGCCTTACGGTTTATCCCCGCTGGCGCGGGGAACACAATCGTGTGTAAATTCGCGGCGGCTCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGTCGAAATATAGACAGCATGTTCCGTACCACGGTTTATCCCCGCTGGCGCGGGGAACACACACTATCCGGGCGGTATTACGCCCAAATATCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGCGGTTTATCCCCGCTGGCGCGGGGAACACACTACTGTCGGTAGCTGGGAGGATGAGGAGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028116|2|2|3754336-3754913|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAGCTC	AACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	TACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	GGCATAGCCAGGCTGATCCGGCGACGGCCTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCGTGTGTAAATTCGCGGCGGCTCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCGAAATATAGACAGCATGTTCCGTACCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTACTGTCGGTAGCTGGGAGGATGAGGAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028116|2|2|3754336-3754909|CRT
TGGTTTATCCCCGCTGGCGCGGGGA	GCTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTC
CGGTTTATCCCCGCTGGCGCGGGGA	ACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGA	GCTCTACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGA	GCTCGGCATAGCCAGGCTGATCCGGCGACGGCCTTA
CGGTTTATCCCCGCTGGCGCGGGGA	ACACAATCGTGTGTAAATTCGCGGCGGCTCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGA	ACACTGGTCGAAATATAGACAGCATGTTCCGTACCA
CGGTTTATCCCCGCTGGCGCGGGGA	ACACACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGA	ACACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGA	ACACACTACTGTCGGTAGCTGGGAGGATGAGGAGAT
CGGTTTATCCCCGCTGGCGCGGGGA

>NZ_CP028116|2|2|3754337-3754909|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAG	CTCAACATCGGAAACGGCTTCGCGGCGGCGGCGTCC
GGTTTATCCCCGCTGGCGCGGGGAA	CTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAG	CTCTACGTGAAGAATATTTGCAACACCCGCAAGAAC
GGTTTATCCCCGCTGGCGCGGGGAG	CTCGGCATAGCCAGGCTGATCCGGCGACGGCCTTAC
GGTTTATCCCCGCTGGCGCGGGGAA	CACAATCGTGTGTAAATTCGCGGCGGCTCCACTGGC
GGTTTATCCCCGCTGGCGCGGGGAA	CACTGGTCGAAATATAGACAGCATGTTCCGTACCAC
GGTTTATCCCCGCTGGCGCGGGGAA	CACACACTATCCGGGCGGTATTACGCCCAAATATCC
GGTTTATCCCCGCTGGCGCGGGGAA	CACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGC
GGTTTATCCCCGCTGGCGCGGGGAA	CACACTACTGTCGGTAGCTGGGAGGATGAGGAGATC
GGTTTATCCCCGCTGGCGCGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028116.1\|WP_001299098.1\|3742981_3744253_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP028116.1\|WP_000210878.1\|3758534_3760172_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP028116.1\|WP_001341835.1\|3746100_3746880_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP028116.1\|WP_001071648.1\|3760399_3761191_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP028116.1\|WP_000059323.1\|3748287_3749742_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP028116.1\|WP_001152074.1\|3749811_3750492_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP028116.1\|WP_001268451.1\|3756216_3757089_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP028116.1\|WP_000036723.1\|3757148_3758447_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP028116.1\|WP_001199970.1\|3755252_3755924_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP028116.1\|WP_000226815.1\|3761922_3764157_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP028116.1\|WP_000581937.1\|3761596_3761845_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP028116.1\|WP_000039758.1\|3752218_3753697_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP028116.1\|WP_001164569.1\|3750914_3752192_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP028116.1\|WP_000046800.1\|3764204_3765506_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP028116.1\|WP_001130266.1\|3744520_3745096_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP028116.1\|WP_000109366.1\|3744243_3744504_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP028116.1\|WP_000254745.1\|3761261_3761597_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP028116.1\|WP_001341834.1\|3745243_3746104_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP028116.1\|WP_000021313.1\|3750501_3750597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180761
NZ_CP028116.1\|WP_001288227.1\|3756062_3756203_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028116.1\|WP_001299098.1\|3742981_3744253_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.77152e-127
NZ_CP028116.1\|WP_000210878.1\|3758534_3760172_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP028116.1\|WP_001341835.1\|3746100_3746880_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.2021e-62
NZ_CP028116.1\|WP_001071648.1\|3760399_3761191_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP028116.1\|WP_000059323.1\|3748287_3749742_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.11123e-80
NZ_CP028116.1\|WP_001152074.1\|3749811_3750492_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.49633e-125
NZ_CP028116.1\|WP_001268451.1\|3756216_3757089_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.01855e-100
NZ_CP028116.1\|WP_000036723.1\|3757148_3758447_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP028116.1\|WP_001199970.1\|3755252_3755924_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
NZ_CP028116.1\|WP_000226815.1\|3761922_3764157_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP028116.1\|WP_000581937.1\|3761596_3761845_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP028116.1\|WP_000039758.1\|3752218_3753697_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.28272e-107
NZ_CP028116.1\|WP_001164569.1\|3750914_3752192_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.54023e-29
NZ_CP028116.1\|WP_000046800.1\|3764204_3765506_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP028116.1\|WP_001130266.1\|3744520_3745096_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP028116.1\|WP_000109366.1\|3744243_3744504_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.33712e-39
NZ_CP028116.1\|WP_000254745.1\|3761261_3761597_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP028116.1\|WP_001341834.1\|3745243_3746104_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.55254e-89
NZ_CP028116.1\|WP_000021313.1\|3750501_3750597_-\|hypothetical-protein	gnl\|CDD\|180761	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	9.20529e-11

>NZ_CP028116.1|WP_000039758.1|3752218_3753697_+|FGGY-family-carbohydrate-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGSVVCEGKGLLQPMHTPYADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP028116.1|WP_001164569.1|3750914_3752192_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEVRTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP028116.1|WP_000021313.1|3750501_3750597_-|hypothetical-protein
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLG
>NZ_CP028116.1|WP_001152074.1|3749811_3750492_-|SDR-family-oxidoreductase
MALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP028116.1|WP_000059323.1|3748287_3749742_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPQEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGTDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP028116.1|WP_001341835.1|3746100_3746880_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRIEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP028116.1|WP_001341834.1|3745243_3746104_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP028116.1|WP_001130266.1|3744520_3745096_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP028116.1|WP_000109366.1|3744243_3744504_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCCLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP028116.1|WP_001299098.1|3742981_3744253_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP028116.1|WP_001199970.1|3755252_3755924_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP028116.1|WP_001288227.1|3756062_3756203_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP028116.1|WP_001268451.1|3756216_3757089_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVYISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP028116.1|WP_000036723.1|3757148_3758447_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP028116.1|WP_000210878.1|3758534_3760172_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP028116.1|WP_001071648.1|3760399_3761191_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP028116.1|WP_000254745.1|3761261_3761597_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP028116.1|WP_000581937.1|3761596_3761845_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP028116.1|WP_000226815.1|3761922_3764157_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP028116.1|WP_000046800.1|3764204_3765506_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028116_1	1.1\|3728148\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728148-3728179	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NZ_CP028116_2	2.1\|3754365\|32\|NZ_CP028116\|CRISPRCasFinder	3754365-3754396	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
NZ_CP028116_1	1.5\|3728392\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728392-3728423	32	NZ_CP030355	Novosphingobium sp. P6W plasmid pP6W2, complete sequence	141173-141204	8	0.75
NZ_CP028116_2	2.1\|3754365\|32\|NZ_CP028116\|CRISPRCasFinder	3754365-3754396	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
NZ_CP028116_2	2.2\|3754426\|32\|NZ_CP028116\|CRISPRCasFinder	3754426-3754457	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	256608-256639	8	0.75
NZ_CP028116_1	1.3\|3728270\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728270-3728301	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
NZ_CP028116_1	1.6\|3728453\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728453-3728484	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	292180-292211	9	0.719
NZ_CP028116_1	1.6\|3728453\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728453-3728484	32	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	20747-20778	9	0.719
NZ_CP028116_2	2.1\|3754365\|32\|NZ_CP028116\|CRISPRCasFinder	3754365-3754396	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
NZ_CP028116_2	2.4\|3754548\|32\|NZ_CP028116\|CRISPRCasFinder	3754548-3754579	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	196778-196809	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP050101	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence	151768-151799	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	508685-508716	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	133778-133809	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	180274-180305	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	151061-151092	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	21422-21453	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	499023-499054	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	106143-106174	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	508869-508900	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	130036-130067	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	172635-172666	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	387130-387161	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	4795-4826	9	0.719
NZ_CP028116_2	2.9\|3754853\|32\|NZ_CP028116\|CRISPRCasFinder	3754853-3754884	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	158950-158981	9	0.719
NZ_CP028116_1	1.5\|3728392\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728392-3728423	32	MF417892	Uncultured Caudovirales phage clone 2F_2, partial genome	39822-39853	10	0.688
NZ_CP028116_1	1.7\|3728514\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728514-3728545	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	903982-904013	10	0.688
NZ_CP028116_2	2.1\|3754365\|32\|NZ_CP028116\|CRISPRCasFinder	3754365-3754396	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
NZ_CP028116_1	1.7\|3728514\|32\|NZ_CP028116\|PILER-CR,CRISPRCasFinder,CRT	3728514-3728545	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1467285-1467316	11	0.656

1. spacer 1.1|3728148|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

2. spacer 2.1|3754365|32|NZ_CP028116|CRISPRCasFinder matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

3. spacer 1.5|3728392|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 8, identity: 0.75

tcttcgcgggtaatcaatgatgattcagtttc	CRISPR spacer
tcttcgcggataatcaaagatgatcgtgaatt	Protospacer
*********.******* ******.  *  *.

4. spacer 2.1|3754365|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

5. spacer 2.2|3754426|32|NZ_CP028116|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

-gacagaacggcctcagtagtctcgtcaggctc	CRISPR spacer
ccaccg-ctggccccagtagcctcgtcaggctt	Protospacer
  ** *  .****.******.***********.

6. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.75

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggtgctgtcgggagcggggaggatgagagaat	Protospacer
. *.******* *** ***********...**

7. spacer 1.3|3728270|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

gagagtgctgacaggtgtctcgattacctgat	CRISPR spacer
ggctttgctggcaggtctctcgattaccttgg	Protospacer
*.   *****.***** ************ .

8. spacer 1.6|3728453|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
atcggcaatatcacggcgtttttcggcgccgc	Protospacer
.   ****************.* **** .**

9. spacer 1.6|3728453|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
accggcaacatcacggcgttcttcggcgccgc	Protospacer
.   ****.************* **** .**

10. spacer 2.1|3754365|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

11. spacer 2.4|3754548|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gcagcagaccggctgatccggcgacggccccg	Protospacer
*  ..** * *******************...

12. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

13. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

14. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

15. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

16. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

17. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

18. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

19. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

20. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

21. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

22. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

23. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

24. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

25. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

26. spacer 2.9|3754853|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

actactgtcggtagctgggaggatgaggagat	CRISPR spacer
ggcgctgtcgggagcggggaggatgagagaat	Protospacer
. ..******* *** ***********...**

27. spacer 1.5|3728392|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to MF417892 (Uncultured Caudovirales phage clone 2F_2, partial genome) position: , mismatch: 10, identity: 0.688

tcttcgcgggtaatcaatgatgattcagtttc	CRISPR spacer
cagttgcaggtaatcaatgatgatgcagccca	Protospacer
.  *.**.**************** ***...

28. spacer 1.7|3728514|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaatattacgagcttcgtcaggccatggac	CRISPR spacer
tcttgcatcacgagcttcgtcaggacatgcgc	Protospacer
.   ..**.*************** **** .*

29. spacer 2.1|3754365|32|NZ_CP028116|CRISPRCasFinder matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******

30. spacer 1.7|3728514|32|NZ_CP028116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

caaaatattacgagcttcgtcaggccatggac	CRISPR spacer
tcttgcatcacgagcttcgtcaggacatgcgg	Protospacer
.   ..**.*************** **** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

601768 : 670639

Enterobacteria_phage(57.89%)

lysis,protease,transposase,portal,tRNA,terminase,integrase,capsid,tail,head

attL 611929:611975|attR 662113:662159

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912342.1\|601768_603154_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.0e-45	34.8
WP_001143540.1\|603189_603711_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|603818_604031_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|604032_604899_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|605379_605922_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988363.1\|606141_606834_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000701359.1\|606864_609474_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001350487.1\|609452_610493_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001255226.1\|610503_611019_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|611021_611654_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
611929:611975	attL	NA	NA	NA	NA
WP_000051902.1\|611988_613152_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000446905.1\|613007_613379_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_000488407.1\|613350_613629_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763390.1\|613676_613895_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	4.9e-35	98.6
WP_001443983.1\|613993_614275_-	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000548537.1\|614285_614477_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|614449_614632_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000611716.1\|614628_615309_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000100847.1\|615305_616091_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|616096_616393_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000206913.1\|616468_616759_-	hypothetical protein	K7P6H3	Enterobacteria_phage	2.5e-26	82.4
WP_001444023.1\|617225_617546_-	hypothetical protein	NA	NA	NA	NA
WP_000066829.1\|617681_617945_-	hypothetical protein	A0A2H4FNC7	Salmonella_phage	4.2e-41	95.4
WP_000259990.1\|618026_618782_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_001067458.1\|618820_619051_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182773.1\|619120_619660_+	hypothetical protein	M9NZI6	Enterobacteria_phage	2.6e-61	66.1
WP_001342088.1\|619746_620676_+	replication protein	M1FN81	Enterobacteria_phage	4.4e-109	67.0
WP_000788789.1\|620672_621374_+	Replication protein P	M1FJ72	Enterobacteria_phage	3.8e-129	98.7
WP_000152742.1\|621578_621926_-	hypothetical protein	NA	NA	NA	NA
WP_001415151.1\|622678_623287_+	hypothetical protein	Q9T1Q5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	1.5e-33	67.3
WP_001038620.1\|623586_624003_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_000520500.1\|623981_624383_+	hypothetical protein	NA	NA	NA	NA
WP_072097617.1\|624506_624608_+	hypothetical protein	NA	NA	NA	NA
WP_001053023.1\|624604_625060_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.1e-60	67.5
WP_000224914.1\|625059_625230_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774477.1\|625222_625513_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.0e-49	96.9
WP_001099712.1\|625509_625872_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971074.1\|625868_626009_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001204791.1\|626094_626478_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737278.1\|626666_627749_-	porin OmpD	Q1MVN1	Enterobacteria_phage	7.8e-166	80.6
WP_000839596.1\|628337_628553_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135274.1\|628552_629050_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	3.2e-90	97.0
WP_000738423.1\|629538_629832_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001427981.1\|631502_631697_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.4e-27	95.3
WP_000453558.1\|632085_632631_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001027297.1\|632605_634531_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.8
WP_000198149.1\|634527_634734_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001375452.1\|634730_636332_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.0e-310	99.4
WP_000381395.1\|636804_638376_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|638395_638743_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001339397.1\|638742_639420_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000088640.1\|639460_640339_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.7e-147	99.0
WP_001345004.1\|640348_640681_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063244.1\|640736_641762_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
WP_000158868.1\|641803_642199_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752961.1\|642210_642585_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	8.0e-62	99.1
WP_000985132.1\|642575_643154_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683110.1\|643150_643546_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	2.9e-70	99.2
WP_001342267.1\|643553_644294_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.0e-129	98.0
WP_000479169.1\|644309_644732_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_000459457.1\|644713_645148_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840236.1\|645140_647702_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.1
WP_000847347.1\|647698_648028_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_001152557.1\|648027_648726_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.4e-130	96.6
WP_000090884.1\|649411_650044_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	99.0
WP_000515439.1\|650104_653518_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
WP_001230523.1\|653588_654188_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.8e-108	97.5
WP_000268807.1\|654252_657213_+	membrane protein	A0A2D1UII2	Escherichia_phage	6.6e-58	97.4
WP_000885569.1\|657212_657797_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.3
WP_000239881.1\|657851_658520_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937502.1\|658576_658882_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226384.1\|659065_660550_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|660736_661690_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177453.1\|662202_662964_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
662113:662159	attR	NA	NA	NA	NA
WP_001224569.1\|663146_664037_-	DUF4434 family protein	NA	NA	NA	NA
WP_001375368.1\|664037_667010_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383941.1\|666996_669234_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420938.1\|669502_670639_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

890167 : 940674

Enterobacteria_phage(51.61%)

lysis,protease,transposase,portal,holin,terminase,integrase,tail,head

attL 885915:885930|attR 892986:893001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
885915:885930	attL	NA	NA	NA	NA
WP_000533654.1\|890167_891238_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	5.6e-201	99.4
WP_001303849.1\|891215_891434_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_001281774.1\|891540_891885_-	hypothetical protein	K7PJY7	Enterobacterial_phage	4.5e-59	98.2
WP_000545733.1\|891913_892081_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	100.0
WP_000002107.1\|892153_892438_-	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	1.8e-50	100.0
WP_012817743.1\|892430_892733_-	restriction alleviation protein, Lar family	Q716F5	Shigella_phage	9.4e-53	97.0
WP_000104414.1\|892729_893347_-	hypothetical protein	Q716F4	Shigella_phage	5.6e-36	64.2
892986:893001	attR	NA	NA	NA	NA
WP_000034231.1\|893348_893906_-	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	4.6e-45	83.6
WP_000812206.1\|893902_894460_-	hypothetical protein	E7C9P6	Salmonella_phage	3.2e-62	64.3
WP_001214436.1\|894456_894621_-	DUF2737 family protein	K7P7R0	Enterobacteria_phage	4.2e-23	98.1
WP_001111278.1\|894631_894925_-	DUF2856 family protein	G8C7L1	Escherichia_phage	2.5e-50	99.0
WP_000951334.1\|894948_895332_-	hypothetical protein	K7P6P8	Enterobacteria_phage	2.5e-66	98.4
WP_000031370.1\|895331_895937_-	ERF family protein	Q9MCQ9	Enterobacteria_phage	4.1e-108	100.0
WP_000088311.1\|896126_896429_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|896464_897283_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_001243354.1\|897460_897613_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	1.5e-19	98.0
WP_000638547.1\|897597_897729_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_085947969.1\|898155_899369_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.7e-169	99.3
WP_000788880.1\|901671_902373_+	Replication protein P	K7P6G2	Enterobacteria_phage	3.8e-129	99.1
WP_000145926.1\|902369_902660_+	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000344573.1\|902956_903313_+	hypothetical protein	K7PHN9	Enterobacterial_phage	2.1e-59	97.3
WP_000814611.1\|903284_903695_+	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	2.1e-71	99.3
WP_001254255.1\|903691_903868_+	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_032341936.1\|903870_904269_+	hypothetical protein	Q9EYC4	Enterobacteria_phage	2.9e-70	99.2
WP_001341811.1\|904228_904438_+	protein ninF	G9L691	Escherichia_phage	2.6e-30	97.1
WP_001003989.1\|904430_905153_+	DNA-binding protein	K7P6K2	Enterobacteria_phage	5.4e-131	99.6
WP_000002261.1\|905152_905443_+	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	2.9e-51	97.9
WP_001008193.1\|905439_905802_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	2.7e-62	99.2
WP_000994516.1\|905798_905987_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_000750155.1\|906198_907158_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_032160865.1\|907496_907619_+	YlcG family protein	NA	NA	NA	NA
WP_001097238.1\|907633_908323_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_001302581.1\|908507_909251_+	hypothetical protein	NA	NA	NA	NA
WP_000499454.1\|909336_909495_+	DUF3927 family protein	NA	NA	NA	NA
WP_000411802.1\|912105_912312_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000075132.1\|912311_912809_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092330.1\|912805_913243_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	1.1e-70	97.2
WP_000881326.1\|913392_914010_+	hypothetical protein	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
WP_001307652.1\|914197_914392_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000235451.1\|914787_915297_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.2e-12	33.3
WP_009442816.1\|915268_917197_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.7e-262	66.4
WP_000259002.1\|917180_917387_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001432013.1\|917383_918976_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.2e-184	61.1
WP_001254029.1\|918965_919142_+	hypothetical protein	E4WL22	Enterobacteria_phage	1.1e-08	56.4
WP_000839179.1\|919219_919624_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_000612622.1\|919620_919968_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.7e-62	99.1
WP_000099160.1\|920016_921555_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_032284507.1\|921551_921920_+	hypothetical protein	A0A0K2FIF4	Enterobacteria_phage	2.4e-50	88.0
WP_001143027.1\|921927_922680_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.0e-128	94.0
WP_000479086.1\|922693_923125_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.1
WP_000533431.1\|923151_923565_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.0e-41	82.8
WP_000082320.1\|923545_926125_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.3
WP_000847304.1\|926121_926451_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
WP_001375577.1\|926450_927149_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	4.7e-132	98.7
WP_001429308.1\|927154_927898_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	98.4
WP_096844540.1\|927843_928476_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.5e-102	91.8
WP_000515142.1\|928721_932198_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.8
WP_001230449.1\|932265_932865_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	2.6e-110	98.5
WP_000268998.1\|932929_934144_+	short-chain dehydrogenase	B6DZB7	Enterobacteria_phage	6.6e-81	95.8
WP_001023459.1\|934145_934415_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	4.6e-43	96.6
WP_000950982.1\|934520_935402_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.9e-147	90.4
WP_000652081.1\|935625_936453_+	type III secretion system effector Cif	A5LH49	Enterobacteria_phage	3.1e-154	98.2
WP_021351651.1\|936576_936948_-	hypothetical protein	K7PH54	Enterobacteria_phage	1.1e-58	95.1
WP_000381395.1\|937422_938994_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|939013_939361_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001339397.1\|939360_940038_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_001448642.1\|940098_940674_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	1.6e-77	77.5

DBSCAN-SWA_3

1155779 : 1293594

163

Escherichia_phage(36.28%)

protease,transposase,portal,holin,terminase,integrase,capsid,tail,head

attL 1200540:1200555|attR 1299948:1299963

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156528.1\|1155779_1157540_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877167.1\|1157725_1158178_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1158252_1159293_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1159649_1160159_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1160377_1161007_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875023.1\|1160969_1163132_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1163141_1163588_-	YccF domain-containing protein	NA	NA	NA	NA
WP_001297106.1\|1163710_1165765_+	DNA helicase IV	A7KV33	Bacillus_phage	7.7e-21	27.9
WP_000424181.1\|1165796_1166255_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1166350_1167013_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1167185_1167599_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1167643_1167961_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116301.1\|1168018_1169209_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048244.1\|1169303_1169582_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1169578_1169908_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375138.1\|1169998_1170658_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
WP_001299351.1\|1171066_1172086_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.3e-85	49.7
WP_000273151.1\|1172063_1172306_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_106875240.1\|1172373_1174824_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.6
WP_001098307.1\|1174917_1175109_-	DUF1482 family protein	NA	NA	NA	NA
WP_000413705.1\|1175105_1175294_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001133037.1\|1175861_1176071_+	hypothetical protein	NA	NA	NA	NA
WP_000394543.1\|1176071_1176710_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	3.3e-07	41.9
WP_000380316.1\|1176721_1176874_-	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001303876.1\|1177150_1177438_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000536233.1\|1177437_1177629_-	hypothetical protein	NA	NA	NA	NA
WP_000986592.1\|1177656_1178058_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	7.4e-13	54.5
WP_000887453.1\|1178166_1178439_+	hypothetical protein	A0A0U2S629	Escherichia_phage	1.1e-12	45.8
WP_000693855.1\|1178422_1178848_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000273724.1\|1179054_1179510_-	hypothetical protein	NA	NA	NA	NA
WP_001205821.1\|1179588_1180704_+	hypothetical protein	V5URT9	Shigella_phage	3.4e-132	68.4
WP_000788742.1\|1180710_1181457_+	ATP-binding protein	A0A088CBP4	Shigella_phage	5.6e-115	84.6
WP_000451007.1\|1181478_1182249_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_001151233.1\|1182264_1182678_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	9.8e-61	89.1
WP_106875241.1\|1183268_1184482_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000955173.1\|1185480_1185618_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	5.4e-08	96.6
WP_001013636.1\|1185662_1185875_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
WP_001341388.1\|1186042_1186321_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_001265141.1\|1186322_1187372_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.5e-110	54.9
WP_001217436.1\|1187384_1187756_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_000090265.1\|1187745_1188117_+	antitermination protein	Q777W5	Enterobacteria_phage	1.0e-53	84.0
WP_000265267.1\|1188268_1189087_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917737.1\|1189373_1189571_+	hypothetical protein	S5MQK8	Escherichia_phage	2.6e-27	96.9
WP_000261902.1\|1189708_1190422_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000874350.1\|1191189_1193040_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_000411814.1\|1193487_1193694_+\|holin	holin	Q6H9V8	Enterobacteria_phage	5.3e-31	98.5
WP_000138558.1\|1193949_1194222_-	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|1194381_1194915_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675931.1\|1195135_1195249_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_012816791.1\|1195470_1195656_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|1196182_1196497_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001300236.1\|1196578_1196803_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.9e-19	88.7
WP_000453587.1\|1197199_1197745_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027379.1\|1197719_1199645_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000198153.1\|1199641_1199848_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001415980.1\|1199844_1201446_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.3e-307	98.5
1200540:1200555	attL	NA	NA	NA	NA
WP_000123251.1\|1201426_1202746_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.6e-232	97.9
WP_001365129.1\|1202755_1203088_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.5e-54	98.2
WP_000063258.1\|1203143_1204169_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_000158897.1\|1204209_1204605_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.9
WP_000752994.1\|1204616_1204970_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000975098.1\|1204981_1205560_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.0e-79	98.4
WP_000683137.1\|1205556_1205952_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	3.7e-65	92.4
WP_000235067.1\|1205959_1206712_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
WP_000479045.1\|1206725_1207148_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000533442.1\|1207174_1207588_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000847298.1\|1210175_1210505_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001443841.1\|1210504_1211203_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.4e-130	97.4
WP_000194707.1\|1211213_1211957_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.2e-149	99.2
WP_159032312.1\|1211902_1212535_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.4e-103	92.8
WP_106875222.1\|1212780_1216257_+	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	97.9
WP_106875243.1\|1216325_1216949_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	2.3e-69	60.9
WP_001023445.1\|1218327_1218597_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.1e-43	97.8
WP_012817749.1\|1218721_1219474_-	type III effector	NA	NA	NA	NA
WP_077630526.1\|1220277_1220904_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.2e-59	55.0
WP_085947969.1\|1220979_1222192_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.7e-169	99.3
WP_001232849.1\|1222232_1222493_-	hypothetical protein	NA	NA	NA	NA
WP_000273151.1\|1222587_1222830_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000048500.1\|1222897_1225348_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.6
WP_000199475.1\|1225442_1225631_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449175.1\|1225627_1225816_-	cell division inhibitor	NA	NA	NA	NA
WP_001331716.1\|1226216_1226381_+	hypothetical protein	NA	NA	NA	NA
WP_001171921.1\|1226384_1226603_-	hypothetical protein	NA	NA	NA	NA
WP_024182289.1\|1226695_1226896_+	hypothetical protein	NA	NA	NA	NA
WP_000692026.1\|1227309_1227612_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	3.7e-17	43.3
WP_001022415.1\|1227614_1227974_+	helix-turn-helix domain-containing protein	A0A222YXG1	Escherichia_phage	3.6e-59	93.3
WP_000578360.1\|1228020_1228413_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.7e-14	39.6
WP_001172789.1\|1228539_1228800_+	transcriptional regulator	H6WRX5	Salmonella_phage	4.8e-21	64.8
WP_000693932.1\|1228796_1229234_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.6e-29	55.0
WP_000729535.1\|1229320_1230331_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.9e-170	88.8
WP_072096947.1\|1230242_1230785_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.8e-78	89.5
WP_000450641.1\|1230818_1231544_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.2e-77	63.4
WP_001040234.1\|1231559_1231952_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.0e-38	62.6
WP_001266133.1\|1231948_1232245_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.8e-47	94.7
WP_001209480.1\|1232241_1232703_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.4e-38	92.9
WP_000403783.1\|1232680_1233037_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.6e-59	100.0
WP_000935422.1\|1233087_1233300_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	6.6e-37	100.0
WP_001224662.1\|1233333_1233516_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_001289353.1\|1233681_1234317_+	ead/Ea22-like family protein	A0A2R2Z315	Escherichia_phage	1.3e-115	100.0
WP_000209152.1\|1234404_1234623_+	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	6.6e-32	100.0
WP_001229296.1\|1234624_1234990_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	5.1e-69	100.0
WP_000206830.1\|1234986_1235331_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	1.7e-58	100.0
WP_000220601.1\|1235535_1235835_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	1.8e-51	100.0
WP_001260977.1\|1235840_1236098_-	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	1.5e-30	86.7
WP_001342259.1\|1236233_1236506_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.2e-10	47.5
WP_001265113.1\|1236507_1237554_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	54.5
WP_000904103.1\|1237566_1237926_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.8e-34	60.0
WP_000640048.1\|1237934_1238465_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
WP_000917770.1\|1238706_1238904_+	hypothetical protein	S5MQK8	Escherichia_phage	8.9e-28	96.9
WP_000301785.1\|1239038_1239752_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000466957.1\|1240201_1240633_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_032361126.1\|1241110_1243048_+	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	0.0e+00	97.1
WP_000143463.1\|1243183_1243363_+	DUF1378 family protein	Q5MBW3	Stx1-converting_phage	4.4e-26	100.0
WP_001290230.1\|1243403_1243649_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_001072901.1\|1243726_1243942_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_000087714.1\|1243946_1244480_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.0e-102	99.4
WP_001056882.1\|1244754_1245324_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	3.4e-104	98.9
WP_000455402.1\|1245323_1245473_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	9.1e-17	98.0
WP_001208680.1\|1245700_1245886_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	1.7e-20	80.3
WP_001302717.1\|1246411_1246726_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001448509.1\|1246807_1247032_-	YlcI/YnfO family protein	A0A0P0ZE23	Stx2-converting_phage	2.9e-19	76.1
WP_000279807.1\|1247073_1247439_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	5.4e-63	95.9
WP_000958380.1\|1247729_1248293_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
WP_001399867.1\|1248289_1249951_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.6
WP_000173071.1\|1250014_1251952_+\|capsid	phage major capsid protein	A0A0P0ZCT9	Stx2-converting_phage	0.0e+00	99.7
WP_001063025.1\|1251996_1252218_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|1254743_1255070_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007892.1\|1255080_1255431_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	3.5e-59	99.1
WP_000573391.1\|1255427_1255874_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1255870_1256215_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275459.1\|1256280_1256997_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	9.5e-128	99.2
WP_001030063.1\|1257002_1257377_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001513217.1\|1257472_1257682_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212962.1\|1257729_1260972_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	95.2
WP_000807964.1\|1260964_1261306_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_001448747.1\|1261305_1262004_+\|tail	phage minor tail protein L	Q6H9T5	Enterobacteria_phage	1.6e-132	99.1
WP_001302649.1\|1262020_1262341_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.0e-49	100.0
WP_001154345.1\|1262448_1262622_+	Arc family DNA-binding protein	A0A0P0ZC65	Stx2-converting_phage	3.4e-23	100.0
WP_001432327.1\|1262692_1263616_+	phage antirepressor Ant	A0A0N7KZK0	Stx2-converting_phage	6.6e-174	98.0
WP_001375566.1\|1263670_1264408_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	7.2e-147	98.8
WP_064721023.1\|1264353_1264986_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.6e-105	93.3
WP_032363152.1\|1265231_1268708_+	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	96.3
WP_001230400.1\|1268774_1269374_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.3e-109	98.5
WP_001023986.1\|1270751_1271021_+\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	4.2e-44	96.6
WP_122988840.1\|1271131_1271209_+	hypothetical protein	NA	NA	NA	NA
WP_001273658.1\|1272576_1272750_+	general stress protein	Q9KX95	Enterobacteria_phage	4.9e-06	96.3
WP_001240628.1\|1272832_1274161_-	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	1.0e-231	98.4
WP_001028095.1\|1274181_1274676_-	pyrimidine utilization flavin reductase protein F	Q9KX93	Enterobacteria_phage	5.0e-51	97.9
WP_001001171.1\|1274686_1275277_-	malonic semialdehyde reductase	NA	NA	NA	NA
WP_001341462.1\|1275286_1276087_-	pyrimidine utilization protein D	NA	NA	NA	NA
WP_001126777.1\|1276094_1276481_-	pyrimidine utilization protein C	NA	NA	NA	NA
WP_001307708.1\|1276492_1277185_-	peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA
WP_001297176.1\|1277184_1278276_-	pyrimidine utilization protein A	NA	NA	NA	NA
WP_000191700.1\|1278563_1279202_+	HTH-type transcriptional regulator RutR	NA	NA	NA	NA
WP_001341463.1\|1279241_1283204_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000979516.1\|1283258_1283468_+	hypothetical protein	NA	NA	NA	NA
WP_001018496.1\|1283626_1285135_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000497942.1\|1285800_1286631_+	FTR1 family protein	NA	NA	NA	NA
WP_000154411.1\|1286688_1287816_+	iron uptake system protein EfeO	NA	NA	NA	NA
WP_001199164.1\|1287821_1289093_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_001307105.1\|1289576_1290500_+	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	9.2e-91	76.7
WP_001297190.1\|1291311_1291767_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000279869.1\|1292391_1293594_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	3.8e-44	34.4
1299948:1299963	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1474492 : 1639742

202

Escherichia_phage(29.08%)

protease,transposase,holin,tRNA,terminase,integrase,capsid,tail,head

attL 1591284:1591300|attR 1626482:1626498

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001113310.1\|1474492_1474960_+	DUF2335 domain-containing protein	A0A1B0YZW3	Pseudomonas_phage	4.4e-09	35.0
WP_000074974.1\|1475036_1476155_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	2.6e-84	44.4
WP_000003742.1\|1476123_1476393_-	excisionase	NA	NA	NA	NA
WP_000048520.1\|1476454_1478926_-	exonuclease	K7PLW7	Enterobacteria_phage	8.5e-59	60.3
WP_001090200.1\|1479018_1479210_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1479206_1479395_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000088311.1\|1479748_1480051_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|1480086_1480905_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000367376.1\|1481151_1481304_-	DUF1391 family protein	M4QQ57	Salicola_phage	8.7e-07	53.2
WP_000444615.1\|1481579_1482224_-	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	2.8e-06	24.9
WP_001261752.1\|1482321_1482549_+	cell division protein	NA	NA	NA	NA
WP_000693816.1\|1482545_1482971_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262408.1\|1483039_1484077_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.7e-85	67.1
WP_000373320.1\|1484108_1484531_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	5.0e-76	96.4
WP_000450612.1\|1484565_1485264_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.7e-71	59.1
WP_000702797.1\|1485285_1485510_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.6e-09	42.3
WP_001290006.1\|1485506_1485863_+	hypothetical protein	A0A222YY85	Escherichia_phage	3.1e-15	65.8
WP_001375713.1\|1485895_1486048_+	hypothetical protein	NA	NA	NA	NA
WP_001273106.1\|1486044_1486356_+	hypothetical protein	A0A222YY67	Escherichia_phage	2.4e-51	83.5
WP_000137957.1\|1486482_1487046_+	hypothetical protein	H6WZG0	Escherichia_phage	2.9e-47	93.9
WP_001278460.1\|1487155_1487260_+	hypothetical protein	NA	NA	NA	NA
WP_000902687.1\|1487446_1487659_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	7.6e-25	90.0
WP_001341382.1\|1487826_1488105_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-11	46.9
WP_001265089.1\|1488106_1489162_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-89	47.8
WP_000140011.1\|1489162_1489528_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.7e-37	63.5
WP_000640023.1\|1489536_1490079_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.4e-67	69.3
WP_000917767.1\|1490391_1490589_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_000611213.1\|1490739_1491789_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	4.0e-183	88.5
WP_000466957.1\|1492260_1492692_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_000143031.1\|1493262_1495113_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.9
WP_000411804.1\|1495403_1495610_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.3e-31	98.5
WP_000138558.1\|1495865_1496138_-	hypothetical protein	NA	NA	NA	NA
WP_001003112.1\|1496297_1496831_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	2.1e-100	95.5
WP_001208682.1\|1497477_1497684_+	hypothetical protein	H6WRZ6	Salmonella_phage	7.1e-12	64.7
WP_000735655.1\|1497748_1497973_+	hypothetical protein	NA	NA	NA	NA
WP_000347013.1\|1498329_1498470_+	hypothetical protein	NA	NA	NA	NA
WP_001341372.1\|1498599_1498785_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	6.4e-20	88.5
WP_001303046.1\|1498826_1499192_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
WP_000958402.1\|1499481_1500045_+\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	4.0e-89	98.4
WP_001341975.1\|1500041_1501703_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.5
WP_000173033.1\|1501766_1503704_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.5
WP_001063025.1\|1503748_1503970_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|1506496_1506823_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007892.1\|1506833_1507184_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	3.5e-59	99.1
WP_000573391.1\|1507180_1507627_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1507623_1507968_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275459.1\|1508033_1508750_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	9.5e-128	99.2
WP_001030060.1\|1508755_1509130_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
WP_001513217.1\|1509225_1509435_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212983.1\|1509482_1512725_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	90.6
WP_000807940.1\|1512717_1513059_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	4.7e-61	97.3
WP_001335877.1\|1513058_1513757_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	1.7e-129	96.6
WP_001429308.1\|1513767_1514511_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	98.4
WP_122993493.1\|1514456_1515089_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	7.1e-103	92.3
WP_000515075.1\|1515334_1518808_+	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	97.8
WP_001230532.1\|1518874_1519474_+	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	4.4e-110	99.0
WP_000279108.1\|1519538_1520852_+\|tail	tail fiber protein	H6WZM9	Escherichia_phage	1.2e-72	96.3
WP_001339397.1\|1520907_1521585_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|1521584_1521932_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381371.1\|1521951_1523523_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.4e-168	58.3
WP_001023483.1\|1523560_1523830_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	1.2e-43	96.6
WP_000938122.1\|1524284_1525646_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	4.4e-49	39.8
WP_095585410.1\|1526022_1526175_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	4.3e-14	84.4
WP_001058323.1\|1526770_1527889_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000107384.1\|1527885_1529679_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186421.1\|1529697_1530405_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|1530401_1530989_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_000063971.1\|1530985_1531384_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
WP_000004899.1\|1531380_1532238_+	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_000460810.1\|1533928_1535065_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000270305.1\|1535077_1535170_+	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA
WP_001300464.1\|1535249_1536548_+	bifunctional acid phosphatase/4-phytase	NA	NA	NA	NA
WP_000208650.1\|1536662_1538843_-	tyrosine-protein kinase	NA	NA	NA	NA
WP_000057871.1\|1538862_1539309_-	protein-tyrosine-phosphatase Etp	NA	NA	NA	NA
WP_001295357.1\|1539296_1540436_-	polysaccharide export protein	NA	NA	NA	NA
WP_000742348.1\|1540481_1542578_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_001038062.1\|1542577_1543324_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_001247610.1\|1543320_1543965_-	lipoprotein GfcB	NA	NA	NA	NA
WP_001295358.1\|1544071_1544377_-	threonine-rich inner membrane protein GfcA	NA	NA	NA	NA
WP_000087763.1\|1544818_1545031_-	cold shock-like protein CspH	NA	NA	NA	NA
WP_000066490.1\|1545316_1545529_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	7.8e-22	71.4
WP_071524879.1\|1545539_1545728_+	cold-shock protein	NA	NA	NA	NA
WP_001316982.1\|1545702_1545933_+	protein YmcE	NA	NA	NA	NA
WP_001019197.1\|1545922_1546096_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000818472.1\|1546143_1547217_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_001444338.1\|1547288_1550033_-	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	1.0e-36	31.9
WP_001264955.1\|1550115_1551144_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA
WP_001120112.1\|1551116_1551809_-	two-component system response regulator TorR	W8CYM9	Bacillus_phage	4.5e-18	28.0
WP_001230242.1\|1551938_1553111_+	pentaheme c-type cytochrome TorC	NA	NA	NA	NA
WP_001062101.1\|1553110_1555657_+	trimethylamine-N-oxide reductase TorA	A0A077SK27	Escherichia_phage	1.0e-70	29.2
WP_000209869.1\|1555653_1556253_+	molecular chaperone TorD	NA	NA	NA	NA
WP_000024561.1\|1556345_1556651_-	chaperone modulator CbpM	NA	NA	NA	NA
WP_000420629.1\|1556650_1557571_-	curved DNA-binding protein	A0A1V0SIM1	Klosneuvirus	3.2e-11	43.0
WP_000097601.1\|1557830_1559090_+	YccE family protein	NA	NA	NA	NA
WP_001044313.1\|1559381_1560623_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
WP_001143120.1\|1560660_1560888_-	hypothetical protein	NA	NA	NA	NA
WP_000607021.1\|1560908_1561487_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_000013656.1\|1561483_1562794_-\|integrase	site-specific integrase	A0A0P0ZGA8	Escherichia_phage	6.0e-253	99.5
WP_001208773.1\|1562846_1563131_-	excisionase family protein	G9L654	Escherichia_phage	9.1e-50	100.0
WP_000497812.1\|1563176_1563428_-	DUF4222 domain-containing protein	G3CFG8	Escherichia_phage	2.9e-39	100.0
WP_021351637.1\|1563415_1563649_-	hypothetical protein	G3CFG9	Escherichia_phage	2.3e-35	100.0
WP_000994787.1\|1563792_1564155_-	DUF1627 domain-containing protein	A0A0P0ZH73	Escherichia_phage	1.7e-56	96.7
WP_042357761.1\|1564190_1564406_-	DUF1382 family protein	G3CFH1	Escherichia_phage	6.7e-29	100.0
WP_000628762.1\|1564338_1565250_-	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	3.6e-164	94.4
WP_000224734.1\|1565763_1565961_-	hypothetical protein	A0A222YWL3	Escherichia_phage	3.2e-25	93.4
WP_000206782.1\|1565966_1566425_-	hypothetical protein	V5UT79	Shigella_phage	7.1e-20	54.5
WP_001014298.1\|1566427_1566619_-	hypothetical protein	A0A0P0ZG45	Escherichia_phage	3.3e-27	100.0
WP_000034212.1\|1566620_1567028_-	ead/Ea22-like family protein	A0A125RPT9	Escherichia_phage	1.3e-70	100.0
WP_000812200.1\|1567024_1567654_-	hypothetical protein	A0A0P0ZFU9	Escherichia_phage	3.1e-58	73.9
WP_001214439.1\|1567650_1567815_-	DUF2737 family protein	K7P7R0	Enterobacteria_phage	9.3e-23	98.1
WP_001111290.1\|1567825_1568122_-	DUF2856 family protein	G9L665	Escherichia_phage	2.3e-48	98.0
WP_000073098.1\|1568145_1568733_-	hypothetical protein	G9L666	Escherichia_phage	4.9e-106	99.5
WP_000536228.1\|1568729_1569410_-	AAA family ATPase	G9L667	Escherichia_phage	3.4e-127	100.0
WP_000613346.1\|1569418_1569607_-	hypothetical protein	G9L668	Escherichia_phage	2.2e-28	100.0
WP_000361831.1\|1569603_1569717_-	host cell division inhibitory peptide Kil	G9L669	Escherichia_phage	2.7e-13	100.0
WP_001198866.1\|1569709_1569850_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q9AZ26	Salmonella_phage	3.3e-21	100.0
WP_000167595.1\|1570043_1570514_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_000198444.1\|1570572_1570956_-	hypothetical protein	G9L671	Escherichia_phage	3.9e-64	100.0
WP_000687675.1\|1571463_1571868_-	hypothetical protein	A0A0P0ZDD3	Stx2-converting_phage	1.6e-68	100.0
WP_001082382.1\|1571864_1572521_-	transcriptional regulator	A0A0P0ZCT8	Stx2-converting_phage	2.6e-116	100.0
WP_000866443.1\|1572517_1572805_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.6e-49	100.0
WP_000428098.1\|1572941_1573646_-	helix-turn-helix transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	1.1e-133	100.0
WP_000064148.1\|1573759_1573993_+	hypothetical protein	A0A0P0ZDD7	Stx2-converting_phage	8.0e-36	100.0
WP_000438542.1\|1574131_1574428_+	hypothetical protein	Q6H9X8	Enterobacteria_phage	5.2e-48	100.0
WP_000788927.1\|1575394_1576096_+	Replication protein P	C1JJ58	Enterobacteria_phage	1.3e-129	99.6
WP_000145907.1\|1576092_1576383_+	protein ren	A0A0N6WES4	Escherichia_phage	1.6e-46	99.0
WP_001000127.1\|1576453_1576732_+	hypothetical protein	Q9ZWY1	Enterobacteria_phage	3.4e-49	100.0
WP_000103679.1\|1576864_1577080_+	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	1.3e-32	100.0
WP_001281772.1\|1577090_1577327_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
WP_000814576.1\|1577283_1577730_+	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
WP_000153280.1\|1577726_1578254_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_001254256.1\|1578250_1578433_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000211422.1\|1578707_1579442_+	phage antirepressor Ant	A0A0N7C203	Escherichia_phage	1.9e-123	100.0
WP_001004024.1\|1579516_1580239_+	DNA-binding protein	A0A0N7C231	Escherichia_phage	7.8e-130	100.0
WP_001107963.1\|1580238_1580844_+	recombination protein NinG	A0A0P0ZCS9	Stx2-converting_phage	1.7e-98	100.0
WP_000144759.1\|1580840_1581035_+	protein ninH	Q6H9W6	Enterobacteria_phage	8.4e-31	100.0
WP_000088311.1\|1581353_1581656_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|1581691_1582510_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_106875221.1\|1582537_1582729_+	Q protein	Q777W5	Enterobacteria_phage	4.3e-27	93.7
WP_000691354.1\|1583235_1584183_+	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_000752026.1\|1584192_1584462_+	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_000142998.1\|1584961_1586899_+	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	0.0e+00	100.0
WP_000143462.1\|1587034_1587214_+	DUF1378 family protein	A0A0P0ZCJ7	Stx2-converting_phage	3.7e-25	100.0
WP_001290217.1\|1587254_1587527_+	DUF826 domain-containing protein	A0A0P0ZC09	Stx2-converting_phage	4.8e-24	100.0
WP_000284518.1\|1587603_1587819_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_000731236.1\|1587823_1588168_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_001092890.1\|1588218_1588752_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.6e-103	100.0
WP_001056806.1\|1589022_1589592_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|1589591_1589738_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|1589965_1590151_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095749.1\|1590575_1590803_-	DUF3950 domain-containing protein	A0A0P0ZCA1	Stx2-converting_phage	3.9e-35	100.0
WP_001303046.1\|1590844_1591210_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
1591284:1591300	attL	NA	NA	NA	NA
WP_000958402.1\|1591499_1592063_+\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	4.0e-89	98.4
WP_001341975.1\|1592059_1593721_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.5
WP_000173033.1\|1593784_1595722_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.5
WP_001063025.1\|1595766_1595988_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000125984.1\|1598514_1598841_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007892.1\|1598851_1599202_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	3.5e-59	99.1
WP_000573391.1\|1599198_1599645_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1599641_1599986_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275459.1\|1600051_1600768_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	9.5e-128	99.2
WP_001030060.1\|1600773_1601148_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
WP_001513217.1\|1601243_1601453_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212983.1\|1601500_1604743_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	90.6
WP_000807940.1\|1604735_1605077_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	4.7e-61	97.3
WP_001429308.1\|1605784_1606528_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	98.4
WP_122993493.1\|1606473_1607106_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	7.1e-103	92.3
WP_001216290.1\|1610895_1611519_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.1e-68	60.4
WP_044723507.1\|1611584_1612898_+\|tail	tail fiber protein	H6WZM9	Escherichia_phage	2.8e-77	98.2
WP_001023435.1\|1612899_1613169_+\|tail	phage tail protein	Q9EYE9	Enterobacteria_phage	2.4e-44	97.8
WP_001131642.1\|1613282_1613858_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-57	60.5
WP_001118085.1\|1614148_1614730_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.7e-48	54.8
WP_012816780.1\|1614797_1615433_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	3.7e-75	92.0
WP_001299273.1\|1615560_1616619_-	T3SS effector EspW	NA	NA	NA	NA
WP_001144080.1\|1616693_1617344_-	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001132165.1\|1617526_1618117_+	bfpT-regulated chaperone	NA	NA	NA	NA
WP_000799399.1\|1618390_1619254_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531601.1\|1619237_1620374_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359438.1\|1620623_1621853_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1621998_1623120_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000085258.1\|1623368_1624598_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	8.4e-132	55.9
WP_000953272.1\|1624963_1625152_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.0e-13	66.0
WP_012816761.1\|1625209_1626238_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000336167.1\|1626227_1626692_+	hypothetical protein	NA	NA	NA	NA
1626482:1626498	attR	NA	NA	NA	NA
WP_001204981.1\|1626684_1626918_+	hypothetical protein	NA	NA	NA	NA
WP_000770175.1\|1626923_1627223_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833619.1\|1627219_1628620_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.2e-115	49.6
WP_000192401.1\|1628820_1629072_+	hypothetical protein	NA	NA	NA	NA
WP_000126687.1\|1629068_1629479_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233304.1\|1629489_1629762_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001132079.1\|1629888_1630113_+	hypothetical protein	NA	NA	NA	NA
WP_000796958.1\|1630364_1630571_+	hypothetical protein	NA	NA	NA	NA
WP_000907455.1\|1630570_1631626_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.5e-70	43.7
WP_000380886.1\|1631638_1631974_+\|head	head decoration protein	NA	NA	NA	NA
WP_000224599.1\|1631986_1632400_+	hypothetical protein	NA	NA	NA	NA
WP_001432354.1\|1632604_1633147_+\|terminase	terminase	O64316	Escherichia_phage	5.1e-33	44.2
WP_000133424.1\|1633402_1633684_+	hypothetical protein	NA	NA	NA	NA
WP_000735412.1\|1634285_1635746_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1635745_1636417_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1636584_1637955_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1637958_1638600_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1638635_1639742_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_5

1743826 : 1792226

Escherichia_phage(29.17%)

protease,transposase,holin,integrase,tail

attL 1743663:1743690|attR 1778421:1778448

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1743663:1743690	attL	NA	NA	NA	NA
WP_000113674.1\|1743826_1744957_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|1744934_1745183_-	excisionase	NA	NA	NA	NA
WP_000199480.1\|1747813_1748002_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449172.1\|1747998_1748187_-	cell division inhibitor	NA	NA	NA	NA
WP_001342117.1\|1748586_1748754_+	hypothetical protein	NA	NA	NA	NA
WP_000920491.1\|1748747_1748981_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|1748958_1749366_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_001171903.1\|1749388_1749607_-	hypothetical protein	NA	NA	NA	NA
WP_001240336.1\|1749679_1749979_-	hypothetical protein	NA	NA	NA	NA
WP_000787428.1\|1750243_1750651_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000912298.1\|1750727_1750955_+	transcriptional regulator	NA	NA	NA	NA
WP_000705622.1\|1750938_1751490_+	hypothetical protein	NA	NA	NA	NA
WP_000020556.1\|1751461_1752502_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_157825328.1\|1752413_1752956_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.5e-85	98.7
WP_001505071.1\|1753719_1753884_+	hypothetical protein	NA	NA	NA	NA
WP_001449026.1\|1754582_1755341_+	AcfC family adhesin Paa	NA	NA	NA	NA
WP_000961821.1\|1755619_1755832_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.3e-16	72.9
WP_001217394.1\|1756052_1756310_+	hypothetical protein	NA	NA	NA	NA
WP_010917803.1\|1756379_1756658_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	48.4
WP_001265290.1\|1756659_1757715_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.9e-88	47.6
WP_000140002.1\|1757715_1758081_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	67.5
WP_001059384.1\|1758077_1758767_+	antiterminator	I6PDF8	Cronobacter_phage	4.0e-59	51.1
WP_000023141.1\|1760291_1762145_+	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	96.6
WP_000284522.1\|1762294_1762510_+\|holin	holin	Q6H9V8	Enterobacteria_phage	1.3e-32	97.2
WP_000731221.1\|1762514_1762859_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.8e-55	95.6
WP_000992088.1\|1762909_1763443_+	lysozyme	B6DZ92	Enterobacteria_phage	5.6e-101	98.3
WP_001056807.1\|1763713_1764232_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	1.0e-94	100.0
WP_000088311.1\|1764288_1764591_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|1764626_1765445_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_001023357.1\|1765547_1765817_+\|tail	phage tail protein	A0A2R2Z347	Escherichia_phage	3.8e-45	100.0
WP_106409364.1\|1769762_1769885_+	hypothetical protein	Q687E5	Enterobacteria_phage	3.8e-05	91.3
WP_000950979.1\|1769991_1770903_+	type III secretion system effector kinase NleH1-2	A5LH48	Enterobacteria_phage	3.0e-134	82.2
WP_000938103.1\|1770968_1771538_+	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
WP_001303943.1\|1772705_1772984_-	hypothetical protein	NA	NA	NA	NA
WP_001414184.1\|1773411_1773558_+	hypothetical protein	NA	NA	NA	NA
WP_001303944.1\|1773694_1774342_-	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_001144877.1\|1774525_1775116_+	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_000147167.1\|1777878_1778097_-	hypothetical protein	NA	NA	NA	NA
WP_001079509.1\|1778598_1779105_-	ferritin-like domain-containing protein	NA	NA	NA	NA
1778421:1778448	attR	NA	NA	NA	NA
WP_001056491.1\|1779150_1779651_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1779736_1779916_-	general stress protein	NA	NA	NA	NA
WP_000443067.1\|1780296_1781103_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1781102_1782296_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001342102.1\|1782307_1783666_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.5e-36	40.3
WP_000763511.1\|1783669_1785265_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194584.1\|1785264_1786827_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1786918_1786963_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1787100_1787982_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001342101.1\|1787978_1788599_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1788699_1789572_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|1789611_1790202_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559253.1\|1790198_1790957_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	2.2e-05	23.9
WP_000422045.1\|1791176_1792226_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_6

1868767 : 1924958

Escherichia_phage(44.62%)

lysis,transposase,portal,holin,tRNA,terminase,integrase,capsid,tail,head

attL 1868401:1868416|attR 1883888:1883903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1868401:1868416	attL	NA	NA	NA	NA
WP_000628065.1\|1868767_1870000_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|1870254_1871238_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123745.1\|1871715_1873089_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157407.1\|1873217_1874153_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040851.1\|1874204_1875440_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.0e-238	98.3
WP_000079604.1\|1875441_1875657_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001302840.1\|1875756_1875945_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_001443846.1\|1875982_1876132_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	2.5e-22	95.9
WP_000166313.1\|1876187_1876997_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
WP_000105151.1\|1876989_1879590_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	2.6e-247	63.2
WP_000632297.1\|1879691_1879967_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_001352098.1\|1880041_1880212_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560223.1\|1880211_1880433_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001427316.1\|1880853_1881006_-	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	55.3
WP_000233320.1\|1881304_1881724_-	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_001072343.1\|1881803_1882058_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
WP_000693802.1\|1882054_1882477_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	6.9e-70	95.7
WP_001432368.1\|1882540_1883020_+	YdaU family protein	A0A0U2RT81	Escherichia_phage	3.2e-63	82.4
WP_085947969.1\|1883022_1884236_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.7e-169	99.3
1883888:1883903	attR	NA	NA	NA	NA
WP_000788968.1\|1884666_1885413_+	ATP-binding protein	V5UQI5	Shigella_phage	2.4e-110	78.5
WP_000450672.1\|1885435_1886197_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.8e-119	89.7
WP_001151124.1\|1886212_1886635_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.0e-64	92.8
WP_001266134.1\|1886631_1886928_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	3.4e-47	94.7
WP_001209480.1\|1886924_1887386_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.4e-38	92.9
WP_000403777.1\|1887363_1887720_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.0e-58	98.3
WP_000935420.1\|1887770_1887983_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
WP_000224233.1\|1888234_1888498_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_000207986.1\|1888508_1889378_+	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	5.2e-120	76.8
WP_001278454.1\|1889493_1889598_+	hypothetical protein	NA	NA	NA	NA
WP_000018421.1\|1889787_1890000_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.1e-27	92.9
WP_001265080.1\|1890446_1891496_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.4e-110	54.6
WP_001217413.1\|1891508_1891883_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.4e-34	63.6
WP_000762928.1\|1891879_1892701_+	antitermination protein	K7P7B9	Enterobacteria_phage	4.1e-82	61.2
WP_000143049.1\|1893870_1895721_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.2
WP_000411802.1\|1896168_1896375_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000075132.1\|1896374_1896872_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092325.1\|1896868_1897306_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	1.7e-71	98.6
WP_000881326.1\|1897455_1898073_+	hypothetical protein	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
WP_001307652.1\|1898260_1898455_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000453587.1\|1898843_1899389_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027379.1\|1899363_1901289_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000198153.1\|1901285_1901492_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001415980.1\|1901488_1903090_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.3e-307	98.5
WP_000123251.1\|1903070_1904390_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.6e-232	97.9
WP_001365129.1\|1904399_1904732_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.5e-54	98.2
WP_000063258.1\|1904787_1905813_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_000158897.1\|1905854_1906250_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.9
WP_000752994.1\|1906261_1906615_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000975098.1\|1906626_1907205_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.0e-79	98.4
WP_000683137.1\|1907201_1907597_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	3.7e-65	92.4
WP_000235067.1\|1907604_1908357_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
WP_000479086.1\|1908370_1908802_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.1
WP_000533431.1\|1908828_1909242_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.0e-41	82.8
WP_000082321.1\|1909222_1911802_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.2
WP_000847304.1\|1911798_1912128_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
WP_001443841.1\|1912127_1912826_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.4e-130	97.4
WP_000194707.1\|1912836_1913580_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.2e-149	99.2
WP_141079530.1\|1913525_1914158_+\|tail	tail assembly protein	A0A0P0ZDX8	Stx2-converting_phage	4.2e-95	90.9
WP_000515144.1\|1914403_1917880_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
WP_001233130.1\|1917947_1918547_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	1.8e-108	97.5
WP_000268927.1\|1918611_1919925_+\|tail	tail fiber protein	Q9EYE8	Enterobacteria_phage	2.8e-77	99.3
WP_001023379.1\|1919926_1920196_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	8.7e-42	95.5
WP_001131657.1\|1920308_1920884_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	1.8e-89	88.9
WP_001443810.1\|1920956_1921586_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001143784.1\|1921667_1922309_+	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001295593.1\|1923249_1923684_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000837943.1\|1923824_1924958_-	porin OmpN	Q1MVN1	Enterobacteria_phage	4.1e-117	58.5

DBSCAN-SWA_7

2126318 : 2226097

126

Enterobacteria_phage(46.32%)

lysis,protease,transposase,portal,holin,head,terminase,integrase,capsid,tail

attL 2175579:2175598|attR 2223161:2223180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_120795384.1\|2126318_2126432_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|2126500_2126734_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086514.1\|2127050_2127641_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000885616.1\|2127738_2128314_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_001448491.1\|2128313_2131274_-	membrane protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	54.1
WP_001233114.1\|2131338_2131938_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.5e-105	93.5
WP_000515505.1\|2132008_2135422_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.0
WP_000741589.1\|2135482_2136130_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.9e-111	97.2
WP_000140707.1\|2136027_2136771_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	95.9
WP_001152371.1\|2136775_2137474_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.9e-133	98.7
WP_000447251.1\|2137483_2137813_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.0e-60	99.1
WP_000372024.1\|2137812_2140878_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.9
WP_001161009.1\|2140849_2141179_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001341514.1\|2141187_2141574_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	5.2e-64	97.7
WP_000211132.1\|2141634_2142378_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	8.1e-130	97.2
WP_001079398.1\|2142388_2142790_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677128.1\|2142786_2143365_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.0e-100	98.4
WP_001283148.1\|2143376_2143652_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	1.1e-44	98.9
WP_001097041.1\|2143644_2143968_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	5.5e-51	98.1
WP_001136588.1\|2144054_2146082_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_000985929.1\|2146026_2147535_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.5e-289	99.6
WP_001072975.1\|2147534_2147747_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000507036.1\|2147743_2149843_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.6
WP_000421825.1\|2149851_2150391_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
WP_001031435.1\|2150951_2151158_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.9e-26	91.2
WP_000035577.1\|2151458_2151869_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
WP_001019606.1\|2152020_2152194_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|2152365_2152521_-	hypothetical protein	NA	NA	NA	NA
WP_122134696.1\|2152600_2152666_-	hypothetical protein	NA	NA	NA	NA
WP_071524604.1\|2152668_2152857_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|2152867_2153080_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|2153442_2153940_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_001092971.1\|2153936_2154470_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189915.1\|2154466_2154778_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|2154782_2154998_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066483.1\|2155751_2155967_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	4.5e-25	76.5
WP_106875218.1\|2156267_2156480_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|2156534_2156624_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_001047133.1\|2156901_2157654_-	antitermination protein	Q8SBE4	Shigella_phage	1.3e-130	94.8
WP_001265198.1\|2157667_2158717_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
WP_012304870.1\|2158718_2158997_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|2159063_2159315_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|2159531_2159687_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|2159758_2160046_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|2160045_2160285_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_001326990.1\|2160309_2160615_+	hypothetical protein	NA	NA	NA	NA
WP_001317460.1\|2160817_2161150_+	protein flxA	NA	NA	NA	NA
WP_000589012.1\|2161586_2162927_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001151195.1\|2162960_2163380_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-55	93.4
WP_000054507.1\|2163420_2164386_-	hypothetical protein	U5P0A0	Shigella_phage	6.5e-55	61.3
WP_000705349.1\|2164366_2164888_-	hypothetical protein	NA	NA	NA	NA
WP_000476993.1\|2164871_2165099_-	transcriptional regulator	NA	NA	NA	NA
WP_001003381.1\|2165176_2165584_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000379589.1\|2165776_2165932_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000347171.1\|2165933_2166509_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|2166995_2167184_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083280.1\|2167180_2167372_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000048369.1\|2167465_2169937_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_000381395.1\|2170132_2171704_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|2171723_2172071_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001339397.1\|2172070_2172748_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000877010.1\|2173002_2174067_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	8.6e-117	60.1
WP_000336726.1\|2174063_2174882_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000088311.1\|2174917_2175220_-\|transposase	transposase	NA	NA	NA	NA
2175579:2175598	attL	NA	NA	NA	NA
WP_016241229.1\|2175655_2175970_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_122993102.1\|2176340_2177354_-	peptidase M85	NA	NA	NA	NA
WP_122988840.1\|2177568_2177646_-	hypothetical protein	NA	NA	NA	NA
WP_001023433.1\|2177756_2178026_-\|tail	phage tail protein	Q9EYE9	Enterobacteria_phage	6.4e-45	98.9
WP_000279009.1\|2178027_2179341_-\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	7.4e-78	98.9
WP_001456919.1\|2179405_2180029_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	5.1e-69	60.9
WP_000515131.1\|2180097_2183574_-	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	95.9
WP_133253573.1\|2183819_2184452_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.1e-106	95.2
WP_000194802.1\|2184397_2185141_-\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	2.4e-150	99.6
WP_001357740.1\|2185151_2185850_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.7
WP_000847298.1\|2185849_2186179_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_106875217.1\|2186175_2188788_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	96.1
WP_000533440.1\|2188768_2189182_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479045.1\|2189208_2189631_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000235099.1\|2189644_2190397_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.8e-135	99.6
WP_000975020.1\|2190795_2191329_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-58	66.7
WP_000752969.1\|2191343_2191697_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.5e-57	92.3
WP_000158901.1\|2191708_2192104_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	7.2e-53	90.2
WP_000063258.1\|2192145_2193171_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_001295978.1\|2193226_2193559_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123254.1\|2193568_2194888_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001301524.1\|2194868_2196470_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
WP_000198153.1\|2196466_2196673_-\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001027230.1\|2196669_2198595_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.1
WP_000867498.1\|2198569_2199115_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	9.6e-80	83.3
WP_001431375.1\|2199501_2199726_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	5.9e-20	92.5
WP_001303878.1\|2199807_2200122_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001208680.1\|2200649_2200835_-	membrane protein	A0A1U9AJA4	Stx1_converting_phage	1.7e-20	80.3
WP_000992045.1\|2201386_2201920_-	lysozyme	B6DZ92	Enterobacteria_phage	8.1e-100	96.6
WP_001041949.1\|2202431_2203223_-	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_000411809.1\|2203226_2203433_-\|holin	holin	Q6H9V8	Enterobacteria_phage	2.4e-31	100.0
WP_000023191.1\|2203880_2205731_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.9
WP_001299632.1\|2206209_2206641_-	tellurite resistance protein	H6WZJ6	Escherichia_phage	7.8e-69	98.6
WP_000498121.1\|2206830_2207040_-	hypothetical protein	K7PJU3	Enterobacteria_phage	2.5e-20	65.2
WP_000735807.1\|2207092_2207317_-	hypothetical protein	NA	NA	NA	NA
WP_001047111.1\|2208161_2208914_-	antitermination protein	K7PGU5	Enterobacteria_phage	2.6e-136	98.8
WP_001375683.1\|2208927_2209977_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.6e-115	57.6
WP_012817785.1\|2209978_2210248_-	hypothetical protein	I6PCV7	Cronobacter_phage	3.0e-10	49.2
WP_001452497.1\|2210301_2210529_-	hypothetical protein	NA	NA	NA	NA
WP_001217944.1\|2210752_2211124_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000042395.1\|2211116_2211434_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000882662.1\|2211536_2211749_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_000211993.1\|2211963_2212515_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000215512.1\|2212866_2213052_-	hypothetical protein	NA	NA	NA	NA
WP_000450895.1\|2213111_2213873_-	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	2.4e-73	63.6
WP_000790460.1\|2213902_2214643_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.7e-114	83.1
WP_000054520.1\|2214649_2215615_-	hypothetical protein	U5P0A0	Shigella_phage	5.0e-55	61.2
WP_000705368.1\|2215595_2216117_-	hypothetical protein	NA	NA	NA	NA
WP_000920571.1\|2216100_2216331_-	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000379972.1\|2216414_2216822_+	helix-turn-helix domain-containing protein	B1B6L9	Salmonella_phage	3.1e-14	58.7
WP_000380321.1\|2216988_2217141_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.9e-06	53.2
WP_000394548.1\|2217152_2217791_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_032102321.1\|2217791_2217974_-	hypothetical protein	NA	NA	NA	NA
WP_000449175.1\|2218564_2218753_+	cell division inhibitor	NA	NA	NA	NA
WP_000199475.1\|2218749_2218938_+	DUF1482 family protein	NA	NA	NA	NA
WP_000102117.1\|2219030_2221493_+	exonuclease	V5UQJ3	Shigella_phage	4.0e-125	47.7
WP_001368608.1\|2221580_2221817_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_001206147.1\|2221836_2223132_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.3e-154	62.2
WP_072095801.1\|2223151_2223262_-	transporter	NA	NA	NA	NA
2223161:2223180	attR	NA	NA	NA	NA
WP_000836079.1\|2223319_2224339_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_001295394.1\|2224350_2225565_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|2225770_2226097_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6

DBSCAN-SWA_8

2242382 : 2255555

uncultured_Caudovirales_phage(88.89%)

protease,portal,terminase,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260840.1\|2242382_2243204_+\|protease	serine protease	NA	NA	NA	NA
WP_000046661.1\|2243242_2243572_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000276149.1\|2243558_2243924_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_000133423.1\|2245237_2245519_-	hypothetical protein	NA	NA	NA	NA
WP_000127891.1\|2245532_2247194_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	2.0e-277	81.6
WP_000113645.1\|2247177_2247534_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_001145905.1\|2247822_2248263_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
WP_000134113.1\|2248262_2248559_-	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
WP_001020674.1\|2248555_2248894_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	8.7e-31	52.7
WP_000267608.1\|2248890_2250102_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.9e-189	79.5
WP_000504055.1\|2250103_2250676_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.7e-61	63.0
WP_001137345.1\|2250715_2251873_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.8e-137	64.9
WP_001132080.1\|2252164_2252389_-	hypothetical protein	NA	NA	NA	NA
WP_000233310.1\|2252514_2252787_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_000126691.1\|2252797_2253208_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000125509.1\|2253204_2253450_-	hypothetical protein	NA	NA	NA	NA
WP_000710169.1\|2253737_2255555_-	DNA primase	Q7M2A8	Enterobacteria_phage	7.5e-129	48.3

DBSCAN-SWA_9

2377922 : 2422782

Enterobacteria_phage(86.36%)

portal,holin,tRNA,terminase,integrase,plate,capsid,tail,head

attL 2380325:2380349|attR 2415423:2415447

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000029479.1\|2377922_2378672_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.6e-08	28.3
WP_001154187.1\|2378671_2379223_-	bifunctional thioredoxin/glutathione peroxidase	NA	NA	NA	NA
WP_000956529.1\|2379285_2380266_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
2380325:2380349	attL	NA	NA	NA	NA
WP_005142454.1\|2380458_2380896_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_000403440.1\|2380996_2381497_-	hypothetical protein	NA	NA	NA	NA
WP_001247212.1\|2381499_2382438_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	5.1e-81	51.5
WP_000021112.1\|2382526_2382838_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	8.3e-20	49.5
WP_001151412.1\|2382933_2383212_+	hypothetical protein	NA	NA	NA	NA
WP_000917795.1\|2383226_2383565_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.9e-52	86.2
WP_044711780.1\|2383575_2383863_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	2.3e-32	76.8
WP_000514277.1\|2383874_2384117_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021668.1\|2384113_2384227_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.2e-08	91.9
WP_000985159.1\|2384313_2384517_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.0e-26	88.1
WP_000153690.1\|2384513_2384759_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	1.0e-33	86.4
WP_000599382.1\|2384900_2385266_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_136748941.1\|2385272_2388095_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.2
WP_000686521.1\|2388171_2389131_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	2.9e-180	99.7
WP_000211274.1\|2389135_2389447_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	1.0e-46	94.2
WP_001080493.1\|2389545_2389953_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	4.0e-22	91.7
WP_000236497.1\|2390512_2391037_+	hypothetical protein	NA	NA	NA	NA
WP_000087814.1\|2391051_2392098_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000613766.1\|2392097_2393849_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	99.5
WP_001262673.1\|2394003_2394840_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
WP_106875224.1\|2394862_2395915_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	5.4e-196	98.3
WP_000632311.1\|2395960_2396761_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.5e-126	89.1
WP_000063100.1\|2396862_2397357_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000864911.1\|2397356_2397557_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	7.9e-32	98.5
WP_000104350.1\|2397559_2397883_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|2397879_2398272_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780572.1\|2398268_2398676_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	9.0e-67	99.3
WP_000920603.1\|2398813_2399281_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.9e-85	98.7
WP_000356339.1\|2399273_2399909_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_001271894.1\|2399905_2400487_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.0e-100	96.9
WP_000213447.1\|2400483_2400834_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001111942.1\|2400837_2401734_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.1e-154	98.0
WP_000071739.1\|2401726_2402257_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.1e-93	99.4
WP_106875225.1\|2402259_2404392_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	4.2e-131	66.7
WP_000144023.1\|2404391_2404970_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.9e-96	89.0
WP_000954196.1\|2405013_2405586_-	serine acetyltransferase	NA	NA	NA	NA
WP_000979950.1\|2405742_2406231_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	7.5e-84	98.1
WP_000853434.1\|2406243_2409051_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	94.9
WP_000333503.1\|2409037_2409193_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651572.1\|2409201_2409576_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.0e-37	73.2
WP_000290462.1\|2409631_2410144_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005384.1\|2410143_2411328_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.7e-225	99.0
WP_106875226.1\|2411485_2412595_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	5.7e-204	98.6
WP_106875227.1\|2412820_2414323_+	DNA-binding protein	NA	NA	NA	NA
WP_000488103.1\|2414566_2414827_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078923.1\|2415017_2415158_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	4.5e-18	95.7
WP_001229265.1\|2415464_2415764_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
2415423:2415447	attR	NA	NA	NA	NA
WP_000672359.1\|2415768_2418156_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018596.1\|2418170_2419154_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_001386830.1\|2419437_2419482_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|2419604_2419961_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2420013_2420211_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|2420307_2420850_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144192.1\|2420853_2422782_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.2e-130	37.4

DBSCAN-SWA_10

2491906 : 2589153

111

Escherichia_phage(30.3%)

lysis,protease,transposase,portal,holin,tRNA,head,terminase,integrase,capsid,tail

attL 2531470:2531484|attR 2590600:2590614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088311.1\|2491906_2492209_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|2492244_2493063_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000604932.1\|2493179_2493611_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	4.8e-42	58.4
WP_000513743.1\|2493626_2493815_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_000939317.1\|2493818_2494178_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457202.1\|2494350_2494989_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_001061578.1\|2495115_2496039_-	DNA-binding transcriptional regulator DmlR	NA	NA	NA	NA
WP_000978494.1\|2496141_2497227_+	multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase	NA	NA	NA	NA
WP_000987525.1\|2497477_2499088_+	BCCT family transporter YeaV	NA	NA	NA	NA
WP_032341932.1\|2499119_2500244_+	carnitine monooxygenase subunit YeaW	NA	NA	NA	NA
WP_001287005.1\|2500299_2501265_+	carnitine monooxygenase subunit YeaX	NA	NA	NA	NA
WP_001342154.1\|2501318_2502434_-	ribonuclease D	NA	NA	NA	NA
WP_000758422.1\|2502515_2504201_-	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	1.5e-35	26.0
WP_000290576.1\|2504405_2504987_-	Slp family lipoprotein YeaY	NA	NA	NA	NA
WP_001221003.1\|2505026_2505722_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000128847.1\|2505779_2507690_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	31.9
WP_001295493.1\|2507821_2508166_+	RidA family protein	NA	NA	NA	NA
WP_001307845.1\|2508528_2508888_+	DUF1889 family protein	NA	NA	NA	NA
WP_000457334.1\|2509007_2509187_-	YoaH family protein	NA	NA	NA	NA
WP_000854972.1\|2509260_2510622_+	aminodeoxychorismate synthase component 1	S4VT78	Pandoravirus	3.4e-41	33.4
WP_000456725.1\|2510625_2511204_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_000624298.1\|2511387_2512752_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_001295494.1\|2512882_2514481_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000394983.1\|2514484_2516041_-	CNNM family cation transport protein YoaE	A0A0R6PEZ3	Moraxella_phage	1.7e-41	45.4
WP_000150551.1\|2516503_2517475_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_000406926.1\|2517537_2518338_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_000228655.1\|2518350_2519202_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_000156255.1\|2519256_2519715_+	DUF986 domain-containing protein	NA	NA	NA	NA
WP_001296134.1\|2520143_2520710_+	manganese efflux pump MntP	NA	NA	NA	NA
WP_000010107.1\|2520706_2521516_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_001062678.1\|2521681_2521891_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
WP_001295496.1\|2521903_2522047_-	YobF family protein	NA	NA	NA	NA
WP_001006866.1\|2522715_2523003_-	hypothetical protein	NA	NA	NA	NA
WP_000714550.1\|2523077_2523221_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
WP_001211011.1\|2523379_2523619_+	hypothetical protein	NA	NA	NA	NA
WP_001262174.1\|2523761_2524553_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_001127210.1\|2524729_2526103_+	MFS transporter	NA	NA	NA	NA
WP_000984517.1\|2526148_2527030_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001431407.1\|2527221_2529270_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.4e-86	33.5
WP_000431370.1\|2529289_2529988_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043882.1\|2530084_2530582_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_001207284.1\|2530711_2531995_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
2531470:2531484	attL	NA	NA	NA	NA
WP_001299674.1\|2531963_2534597_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_000057024.1\|2534676_2536116_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001295499.1\|2536233_2536470_+	DUF1480 family protein	NA	NA	NA	NA
WP_000929530.1\|2536490_2536766_+	YebW family protein	NA	NA	NA	NA
WP_000812724.1\|2536766_2537423_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.1e-56	50.2
WP_001121225.1\|2538377_2539028_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_000491545.1\|2539252_2540128_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	7.2e-162	99.7
WP_001023379.1\|2540268_2540538_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	8.7e-42	95.5
WP_000268926.1\|2540539_2541853_-\|tail	tail fiber protein	Q9EYE8	Enterobacteria_phage	2.8e-77	99.3
WP_000099160.1\|2542571_2544110_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_000612626.1\|2544158_2544506_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839165.1\|2544502_2544907_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.5e-69	99.3
WP_000514713.1\|2545045_2548441_-	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	83.6
WP_050439450.1\|2548783_2549416_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.9e-101	97.1
WP_000194723.1\|2549361_2550105_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_001357740.1\|2550115_2550814_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.7
WP_000847298.1\|2550813_2551143_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000081762.1\|2551139_2553752_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	91.9
WP_000533440.1\|2553732_2554146_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479045.1\|2554172_2554595_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000235098.1\|2554608_2555361_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.9e-135	99.2
WP_000683137.1\|2555368_2555764_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	3.7e-65	92.4
WP_000975096.1\|2555760_2556339_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
WP_000752994.1\|2556350_2556704_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000158897.1\|2556715_2557111_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.9
WP_000063258.1\|2557152_2558178_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_001365129.1\|2558233_2558566_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.5e-54	98.2
WP_000123251.1\|2558575_2559895_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.6e-232	97.9
WP_001443752.1\|2559875_2561477_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.6e-308	98.7
WP_000198153.1\|2561473_2561680_-\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001027379.1\|2561676_2563602_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000453587.1\|2563576_2564122_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001307652.1\|2564510_2564705_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000881326.1\|2564892_2565510_-	hypothetical protein	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
WP_000092325.1\|2565659_2566097_-\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	1.7e-71	98.6
WP_000075132.1\|2566093_2566591_-	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000411802.1\|2566590_2566797_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000143049.1\|2567244_2569095_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.2
WP_000762928.1\|2570265_2571087_-	antitermination protein	K7P7B9	Enterobacteria_phage	4.1e-82	61.2
WP_001217413.1\|2571083_2571458_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.4e-34	63.6
WP_001265229.1\|2571470_2572520_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.6
WP_000191872.1\|2572521_2572794_-	hypothetical protein	S4TNP0	Salmonella_phage	1.1e-12	53.0
WP_000756596.1\|2572915_2573260_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
WP_000935259.1\|2573379_2573592_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000104474.1\|2573825_2574383_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
WP_000683609.1\|2574384_2574603_-	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
WP_001289673.1\|2574730_2575042_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	7.2e-56	92.2
WP_000699809.1\|2575034_2575262_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
WP_000603384.1\|2575258_2575540_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
WP_001444941.1\|2577106_2578069_-	DNA-binding protein	U5P0A0	Shigella_phage	2.7e-69	51.5
WP_000693943.1\|2578091_2578517_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000172738.1\|2578513_2578816_-	transcriptional regulator	K7PHA1	Enterobacteria_phage	8.6e-06	34.8
WP_001169687.1\|2578913_2579285_+	hypothetical protein	NA	NA	NA	NA
WP_001302048.1\|2579305_2579497_+	hypothetical protein	NA	NA	NA	NA
WP_001448501.1\|2579498_2579777_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001427316.1\|2580063_2580216_+	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	55.3
WP_000560218.1\|2580636_2580858_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	1.8e-37	98.6
WP_000245534.1\|2580851_2581028_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	4.1e-24	89.7
WP_001307773.1\|2581101_2581377_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	3.0e-42	96.7
WP_000105101.1\|2581475_2584127_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	77.6
WP_000166317.1\|2584119_2584929_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	6.8e-106	71.5
WP_042853000.1\|2584985_2585180_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	7.6e-32	96.9
WP_001356607.1\|2585172_2585361_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.6e-18	97.9
WP_001443927.1\|2585467_2585749_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.7e-11	41.2
WP_001189089.1\|2585714_2586830_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.6e-97	51.8
WP_000976492.1\|2587182_2587524_-	YebY family protein	NA	NA	NA	NA
WP_032341845.1\|2587536_2588406_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000204699.1\|2588409_2588784_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|2588922_2589153_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
2590600:2590614	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2791739 : 2797057

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000099148.1\|2791739_2793278_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-295	99.6
WP_000612626.1\|2793326_2793674_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839179.1\|2793670_2794075_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_000378676.1\|2794073_2794505_+	hypothetical protein	NA	NA	NA	NA
WP_001119729.1\|2794583_2794817_+	DUF905 family protein	NA	NA	NA	NA
WP_001234620.1\|2794916_2795735_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-44	38.2
WP_000849582.1\|2795789_2796275_+	antirestriction protein	A9J566	Pseudomonas_phage	2.6e-12	31.5
WP_001186725.1\|2796290_2796767_+	RadC family protein	NA	NA	NA	NA
WP_000692323.1\|2796835_2797057_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8

DBSCAN-SWA_12

2830693 : 2836995

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100797.1\|2830693_2831236_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.9e-51	57.3
WP_000857547.1\|2831240_2832119_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.5e-106	64.1
WP_001023633.1\|2832176_2833076_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.7e-29	34.8
WP_000699427.1\|2833075_2834161_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-101	54.5
WP_000183038.1\|2834532_2835426_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.9e-46	42.0
WP_001116073.1\|2835600_2836995_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.2e-19	32.3

DBSCAN-SWA_13

2928437 : 2938365

Enterobacteria_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2928437_2929574_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001342301.1\|2929570_2931571_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.0
WP_001171523.1\|2931902_2932283_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612591.1\|2932279_2932627_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998019.1\|2932676_2934062_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3
WP_000950404.1\|2934493_2934964_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.0e-81	99.4
WP_000598641.1\|2935010_2935730_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2935726_2937412_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|2937633_2938365_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5

DBSCAN-SWA_14

3009192 : 3111372

114

Enterobacteria_phage(35.44%)

lysis,protease,transposase,holin,head,terminase,integrase,tail

attL 3046338:3046356|attR 3120588:3120606

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000101718.1\|3009192_3010434_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.2e-98	43.1
WP_000387479.1\|3010930_3011137_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001443784.1\|3011820_3012381_+	host cell division inhibitor Icd-like protein	Q8SBF3	Shigella_phage	9.0e-17	45.5
WP_001342316.1\|3012370_3012613_+	hypothetical protein	NA	NA	NA	NA
WP_001204070.1\|3012585_3012807_+	hypothetical protein	NA	NA	NA	NA
WP_001204970.1\|3012808_3013042_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|3013047_3013347_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833625.1\|3013343_3014744_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.6e-115	60.1
WP_001080641.1\|3014943_3015189_+	hypothetical protein	NA	NA	NA	NA
WP_000391151.1\|3015319_3015514_+	hypothetical protein	NA	NA	NA	NA
WP_001018604.1\|3015517_3015679_+	hypothetical protein	NA	NA	NA	NA
WP_001229487.1\|3015806_3016295_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	4.6e-25	42.3
WP_000624042.1\|3016457_3017381_+	hypothetical protein	A0A0R6PHC6	Moraxella_phage	6.9e-14	24.9
WP_001113637.1\|3020757_3021405_+	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_001211567.1\|3021439_3022492_-	cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH	NA	NA	NA	NA
WP_000824439.1\|3022488_3023046_-	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_032344719.1\|3023042_3024986_-	cytochrome c-type biogenesis heme lyase CcmF	NA	NA	NA	NA
WP_001026418.1\|3024982_3025462_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000186540.1\|3025458_3025668_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_001295447.1\|3025664_3026402_-	heme exporter protein CcmC	NA	NA	NA	NA
WP_000971723.1\|3026443_3027106_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_000888560.1\|3027102_3027720_-	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	1.9e-12	25.5
WP_000528376.1\|3027738_3028341_-	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000835177.1\|3028350_3028800_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000013509.1\|3028796_3029660_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000091291.1\|3029646_3030342_-	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000778069.1\|3030348_3032835_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000557378.1\|3032831_3033095_-	chaperone NapD	NA	NA	NA	NA
WP_000686723.1\|3033084_3033579_-	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_000849214.1\|3033987_3034476_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000758074.1\|3034624_3036271_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_000422231.1\|3036488_3038132_-	microcin J25 efflux ABC transporter YojI	W8CYL7	Bacillus_phage	9.5e-14	24.0
WP_000884922.1\|3038207_3038858_-	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	1.4e-05	31.7
WP_000786386.1\|3038857_3039922_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.8e-18	50.5
WP_000406116.1\|3039995_3041051_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_000865576.1\|3041162_3042254_-	porin OmpC	Q1MVN1	Enterobacteria_phage	9.4e-119	60.1
WP_001249127.1\|3042992_3045665_+	phosphotransferase RcsD	NA	NA	NA	NA
WP_001061917.1\|3045681_3046332_+	transcriptional regulator RcsB	NA	NA	NA	NA
3046338:3046356	attL	NA	NA	NA	NA
WP_000876007.1\|3046417_3049267_-	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	1.7e-42	27.0
WP_001225855.1\|3049541_3050318_-	YfaP family protein	NA	NA	NA	NA
WP_001104541.1\|3050322_3051972_-	DUF2300 domain-containing protein	NA	NA	NA	NA
WP_001676637.1\|3051972_3056367_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_001025664.1\|3057168_3058491_+	type III secretion system effector NleA	H6WZN2	Escherichia_phage	2.5e-227	85.7
WP_001448330.1\|3059184_3059832_-	T3SS effector NleG family protein	B6DZC0	Enterobacteria_phage	2.4e-37	43.3
WP_001023380.1\|3060041_3060311_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	7.3e-41	94.4
WP_000279018.1\|3060312_3061626_-\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	2.8e-77	97.3
WP_001228241.1\|3061690_3062290_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.4e-100	91.0
WP_001230644.1\|3062357_3062573_-	hypothetical protein	Q9LA64	Enterobacterial_phage	2.9e-32	95.8
WP_000099160.1\|3062635_3064174_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-296	99.8
WP_000612626.1\|3064222_3064570_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839165.1\|3064566_3064971_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.5e-69	99.3
WP_001375477.1\|3064999_3068299_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	95.2
WP_000090884.1\|3068359_3068992_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	99.0
WP_012817801.1\|3068928_3069672_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-145	94.3
WP_001152619.1\|3069677_3070376_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.3e-133	99.1
WP_000847413.1\|3070375_3070705_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.3e-52	91.7
WP_000082375.1\|3070701_3073263_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	95.0
WP_000533403.1\|3073243_3073657_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479086.1\|3073683_3074115_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.1
WP_000683071.1\|3074887_3075283_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	4.2e-61	87.0
WP_000975037.1\|3075279_3075855_-\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	7.5e-51	58.7
WP_001204544.1\|3075869_3076223_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000201528.1\|3076215_3076590_-	hypothetical protein	NA	NA	NA	NA
WP_000522643.1\|3076641_3077526_-	hypothetical protein	C6ZCY2	Enterobacteria_phage	6.5e-94	54.1
WP_000256849.1\|3077583_3077931_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.5e-22	58.1
WP_001254039.1\|3077967_3079473_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_000258991.1\|3081050_3081257_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	4.2e-12	60.0
WP_001238637.1\|3081240_3081447_-\|terminase	terminase	A0A2I6TC92	Escherichia_phage	1.1e-12	59.4
WP_024262528.1\|3081459_3083169_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	4.9e-239	67.3
WP_000235436.1\|3083140_3083650_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001427981.1\|3084044_3084239_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.4e-27	95.3
WP_000738423.1\|3084598_3084892_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001228695.1\|3084982_3085165_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000075153.1\|3085381_3085879_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	1.6e-89	96.4
WP_000284524.1\|3085878_3086094_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_012578864.1\|3086236_3086635_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|3086715_3086874_-	DUF3927 family protein	NA	NA	NA	NA
WP_001235460.1\|3087954_3088578_-	antitermination protein	K7PM87	Enterobacteria_phage	9.8e-113	98.6
WP_001028854.1\|3088574_3089240_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001223927.1\|3089236_3089839_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	1.6e-91	94.6
WP_001108084.1\|3089813_3090380_-	endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
WP_001429269.1\|3090909_3092745_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	0.0e+00	99.7
WP_001254228.1\|3093248_3093431_-	NinE family protein	A0A1U9AJF6	Stx1_converting_phage	1.1e-29	100.0
WP_000153270.1\|3093427_3093955_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	9.5e-101	100.0
WP_000810176.1\|3093951_3094398_-	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	3.4e-75	92.6
WP_000229807.1\|3094405_3094612_-	hypothetical protein	G8C7M4	Escherichia_phage	1.8e-26	97.1
WP_000145926.1\|3094684_3094975_-	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000788878.1\|3094971_3095673_-	Replication protein 14	K7P6G2	Enterobacteria_phage	1.7e-129	99.6
WP_000185462.1\|3095669_3096608_-	replication protein	C1JJ53	Enterobacteria_phage	1.1e-171	99.4
WP_000035947.1\|3096640_3096937_-	hypothetical protein	A0A0N7C1W0	Escherichia_phage	1.3e-46	96.9
WP_000276885.1\|3097046_3097232_-	hypothetical protein	K7PHK4	Enterobacteria_phage	1.2e-26	100.0
WP_001095982.1\|3097312_3097963_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	4.9e-123	100.0
WP_000256573.1\|3098277_3098583_+	hypothetical protein	K7PJM7	Enterobacteria_phage	7.0e-48	99.0
WP_000930321.1\|3098585_3098924_+	hypothetical protein	K7PJW2	Enterobacteria_phage	5.8e-59	99.1
WP_000167595.1\|3099057_3099528_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_000065385.1\|3099677_3100046_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	3.8e-64	97.5
WP_001198860.1\|3100118_3100283_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000372926.1\|3100251_3100416_+	host cell division inhibitory peptide Kil	A0A0P0ZC96	Stx2-converting_phage	3.2e-23	98.1
WP_000995439.1\|3100470_3100767_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|3100772_3101558_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186740.1\|3101554_3102232_+	YqaJ viral recombinase family protein	A0A1I9LJM9	Stx_converting_phage	4.6e-132	100.0
WP_001303590.1\|3102231_3102414_+	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	7.4e-29	100.0
WP_000548547.1\|3102386_3102578_+	DUF1382 family protein	A0A1I9LJM8	Stx_converting_phage	1.9e-27	100.0
WP_001444000.1\|3102588_3102870_+	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000763358.1\|3102968_3103190_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.6e-33	95.9
WP_001289868.1\|3103186_3103792_+	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	1.7e-45	96.9
WP_001345188.1\|3103788_3104139_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.3e-33	80.2
WP_000457736.1\|3104213_3104456_+	DUF4222 domain-containing protein	H6WZF9	Escherichia_phage	3.7e-36	96.2
WP_001281192.1\|3104574_3104919_+	hypothetical protein	K7PJY7	Enterobacterial_phage	5.3e-60	100.0
WP_001444001.1\|3105024_3105243_+	excisionase	K7PKU2	Enterobacteria_phage	2.4e-34	98.6
WP_000533670.1\|3105220_3106291_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	1.1e-196	98.0
WP_001215756.1\|3106305_3106911_-	DUF1175 domain-containing protein	NA	NA	NA	NA
WP_000012302.1\|3106907_3108596_-	DUF2138 domain-containing protein	NA	NA	NA	NA
WP_001281242.1\|3108744_3111372_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	8.1e-92	30.4
3120588:3120606	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3200045 : 3273559

Enterobacteria_phage(50.0%)

lysis,transposase,portal,holin,tRNA,terminase,integrase,capsid,head

attL 3225898:3225913|attR 3246058:3246073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001283577.1\|3200045_3200858_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289165.1\|3200857_3201871_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000699121.1\|3201936_3203073_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.9e-23	29.1
WP_000615813.1\|3203171_3204167_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000127749.1\|3204163_3205342_-	MFS transporter	NA	NA	NA	NA
WP_000817178.1\|3205625_3206846_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_000683823.1\|3207004_3209011_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_000559764.1\|3209131_3209410_-	YfcL family protein	NA	NA	NA	NA
WP_001089232.1\|3209443_3209992_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000447359.1\|3209991_3210801_-	TSUP family transporter	NA	NA	NA	NA
WP_032341809.1\|3210800_3211625_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000918470.1\|3211628_3212714_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	48.4
WP_001295704.1\|3212748_3213681_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000730806.1\|3213846_3214398_+	endonuclease SmrB	NA	NA	NA	NA
WP_001315753.1\|3214470_3215322_-	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_000844750.1\|3215323_3215863_-	fimbrial protein	NA	NA	NA	NA
WP_000714139.1\|3215859_3216348_-	fimbrial protein	NA	NA	NA	NA
WP_000018471.1\|3216344_3216854_-	fimbrial protein	NA	NA	NA	NA
WP_000482751.1\|3216869_3217622_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001375769.1\|3217641_3220287_-	fimbrial usher protein YfcU	NA	NA	NA	NA
WP_000033328.1\|3220368_3220932_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001195819.1\|3221615_3222101_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000426169.1\|3222303_3224448_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_000531954.1\|3224447_3225758_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
3225898:3225913	attL	NA	NA	NA	NA
WP_001296869.1\|3225937_3226222_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_001296861.1\|3226593_3227934_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000937833.1\|3228298_3229357_+	hypothetical protein	NA	NA	NA	NA
WP_000776768.1\|3229538_3230294_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368131.1\|3230587_3231520_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
WP_000958687.1\|3231831_3232989_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	1.1e-221	99.2
WP_000440209.1\|3233233_3234376_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	9.2e-24	28.9
WP_001280420.1\|3234446_3236570_-	hypothetical protein	A0A2D1GLP5	Escherichia_phage	2.5e-59	36.7
WP_000287055.1\|3236691_3236958_+	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	9.5e-33	90.5
WP_000749290.1\|3237028_3237514_+	hypothetical protein	NA	NA	NA	NA
WP_000868968.1\|3237528_3239373_-	hypothetical protein	A0A192Y934	Salmonella_phage	4.0e-239	72.1
WP_000246938.1\|3239372_3240779_-	phage DNA ejection protein	I6RSG0	Salmonella_phage	1.1e-127	55.8
WP_000964882.1\|3240788_3241481_-	DNA transfer protein	G5DA80	Enterobacteria_phage	9.2e-112	100.0
WP_000614047.1\|3241483_3241939_-	DUF2824 family protein	Q716G5	Shigella_phage	3.3e-86	98.0
WP_000785546.1\|3241938_3242787_-	Packaged DNA stabilization protein gp26	Q716G6	Shigella_phage	1.5e-100	97.9
WP_001122374.1\|3242786_3244205_-	Packaged DNA stabilization protein gp10	Q716G7	Shigella_phage	2.3e-274	99.2
WP_000246750.1\|3244213_3244696_-	packaged DNA stabilization protein p27	Q716G8	Shigella_phage	3.8e-88	100.0
WP_000375639.1\|3244670_3244856_-	hypothetical protein	Q716G9	Shigella_phage	4.6e-26	98.4
WP_001133481.1\|3244898_3246170_-\|head	head protein	Q716H0	Shigella_phage	6.6e-241	99.8
3246058:3246073	attR	NA	NA	NA	NA
WP_032341807.1\|3246181_3247066_-\|capsid	phage capsid scaffolding protein	Q716H1	Shigella_phage	9.9e-143	98.3
WP_000852339.1\|3247079_3249206_-\|portal	portal protein	Q9AYZ9	Salmonella_phage	0.0e+00	99.3
WP_000200776.1\|3249208_3250621_-\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	2.2e-277	99.6
WP_000179910.1\|3250617_3251043_-	hypothetical protein	Q716H4	Shigella_phage	1.8e-65	87.9
WP_000807788.1\|3251122_3251365_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_000999682.1\|3251468_3251840_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.2e-55	88.6
WP_085947969.1\|3252229_3253443_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.7e-169	99.3
WP_106875231.1\|3253448_3253955_-	Rha family transcriptional regulator	A0A2D1GLJ3	Escherichia_phage	1.1e-82	100.0
WP_000092296.1\|3254160_3254598_-\|lysis	lysis protein	K7P710	Enterobacteria_phage	1.1e-70	97.2
WP_000229392.1\|3254594_3255071_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
WP_000783734.1\|3255054_3255378_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_032344729.1\|3256450_3257074_-	antitermination protein	K7PM87	Enterobacteria_phage	2.0e-113	99.5
WP_001271146.1\|3257070_3257736_-	serine/threonine protein phosphatase	K7P721	Enterobacteria_phage	1.6e-129	97.7
WP_000144614.1\|3257713_3257920_-	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
WP_001107956.1\|3257916_3258522_-	recombination protein NinG	A0A1I9LJQ2	Stx_converting_phage	5.6e-97	98.0
WP_072189684.1\|3258514_3258724_-	protein ninF	G9L691	Escherichia_phage	2.2e-29	95.6
WP_000924601.1\|3258683_3259085_-	hypothetical protein	Q9EYC4	Enterobacteria_phage	1.4e-72	100.0
WP_001254255.1\|3259087_3259264_-	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_000814611.1\|3259260_3259671_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	2.1e-71	99.3
WP_000344573.1\|3259642_3259999_-	hypothetical protein	K7PHN9	Enterobacterial_phage	2.1e-59	97.3
WP_000103674.1\|3260464_3260680_-	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	2.2e-32	98.6
WP_001248395.1\|3260766_3262143_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	5.3e-252	99.1
WP_000539347.1\|3262139_3262961_-	replication protein	K7PJZ3	Enterobacterial_phage	1.7e-152	99.3
WP_001375758.1\|3263144_3263423_-	transcriptional regulator	K7P7A2	Enterobacteria_phage	1.5e-41	96.7
WP_001054987.1\|3263532_3263757_-	helix-turn-helix domain-containing protein	A0A0N7C1T6	Escherichia_phage	1.4e-29	86.3
WP_000092874.1\|3263901_3264576_+	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	1.2e-103	83.9
WP_000394868.1\|3264616_3264913_+	hypothetical protein	NA	NA	NA	NA
WP_012817806.1\|3265346_3265619_+	hypothetical protein	K7PH69	Enterobacterial_phage	1.0e-26	98.9
WP_001430488.1\|3265621_3265984_+	hypothetical protein	K7P6R2	Enterobacteria_phage	6.2e-59	100.0
WP_000382838.1\|3266014_3266509_-	hypothetical protein	K7PK22	Enterobacteria_phage	1.6e-89	99.4
WP_000167585.1\|3266709_3267180_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	1.1e-87	99.4
WP_000776959.1\|3267323_3267635_+	superinfection exclusion protein	O48416	Enterobacteria_phage	9.3e-56	99.0
WP_000972063.1\|3267710_3267845_+	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
WP_001243355.1\|3267829_3267982_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000050554.1\|3268057_3268228_+	hypothetical protein	K7PJW0	Enterobacteria_phage	3.0e-24	100.0
WP_000031004.1\|3268238_3268844_+	ERF family protein	O48415	Enterobacteria_phage	2.4e-108	100.0
WP_000951323.1\|3268843_3269227_+	hypothetical protein	K7P6P8	Enterobacteria_phage	8.5e-67	99.2
WP_001111303.1\|3269250_3269544_+	DUF2856 family protein	K7P7E6	Enterobacteria_phage	5.0e-51	100.0
WP_000812180.1\|3269715_3270303_+	hypothetical protein	K7PGR4	Enterobacteria_phage	5.0e-58	97.5
WP_000052365.1\|3270299_3270968_+	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	9.3e-69	79.7
WP_000060377.1\|3270969_3271158_+	hypothetical protein	Q9G079	Enterobacteria_phage	1.7e-28	100.0
WP_001375782.1\|3271161_3271779_+	hypothetical protein	Q9G078	Enterobacteria_phage	3.7e-112	100.0
WP_000156090.1\|3271775_3272363_+	DUF551 domain-containing protein	Q9G077	Enterobacteria_phage	7.5e-115	100.0
WP_000376716.1\|3272362_3272641_+	DUF4752 family protein	K7P6P7	Enterobacteria_phage	5.4e-47	98.9
WP_001368678.1\|3272798_3273098_+	hypothetical protein	Q9G076	Enterobacteria_phage	2.4e-53	100.0
WP_000545713.1\|3273133_3273301_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.2e-25	96.4
WP_001163428.1\|3273358_3273559_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0

DBSCAN-SWA_16

3528273 : 3633146

101

Stx2-converting_phage(27.69%)

transposase,holin,tRNA,terminase,integrase,capsid,tail,head

attL 3609630:3609645|attR 3639898:3639913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298974.1\|3528273_3529011_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3529142_3530477_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_001341633.1\|3530685_3531567_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000189207.1\|3531669_3532257_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|3532312_3532696_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|3533000_3533690_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997403.1\|3533737_3534775_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3534981_3535401_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001341635.1\|3535469_3536168_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000083007.1\|3536199_3538860_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3538973_3540329_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000464877.1\|3540353_3540698_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3540694_3541993_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001235102.1\|3547846_3550420_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_032344751.1\|3550549_3551281_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079094.1\|3551277_3552258_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3552392_3553130_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|3553400_3553742_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|3553845_3553893_+	hypothetical protein	NA	NA	NA	NA
WP_000200116.1\|3553991_3555152_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225221.1\|3555194_3556316_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168054.1\|3556326_3557397_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.2
WP_000976004.1\|3557606_3557972_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|3558121_3558640_+	YfiR family protein	NA	NA	NA	NA
WP_000969036.1\|3558629_3559856_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589828.1\|3559871_3560354_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|3560430_3560778_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264777.1\|3560819_3561587_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3561617_3562166_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3562184_3562433_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460032.1\|3562681_3564043_-	signal recognition particle protein	NA	NA	NA	NA
WP_001189257.1\|3564134_3565001_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|3565021_3566308_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3566362_3566956_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|3567078_3567957_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|3568042_3569704_+	DNA repair protein RecN	NA	NA	NA	NA
WP_032344749.1\|3569852_3570194_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|3570255_3570546_-	RnfH family protein	NA	NA	NA	NA
WP_000600190.1\|3570535_3571012_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3571143_3571626_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000938109.1\|3573380_3574742_+	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	1.2e-51	29.6
WP_001370486.1\|3575118_3578520_-	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.3e-219	39.3
WP_001301673.1\|3579111_3581460_-	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_115801847.1\|3581479_3581569_-	hypothetical protein	NA	NA	NA	NA
WP_001023420.1\|3581675_3581945_-\|tail	phage tail protein	H6WZN0	Escherichia_phage	3.8e-45	100.0
WP_000268987.1\|3581946_3583260_-\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	4.8e-77	98.6
WP_001427270.1\|3583324_3583924_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.7e-109	98.5
WP_000514836.1\|3583991_3587465_-	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	97.4
WP_122996338.1\|3587703_3588336_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	4.9e-104	97.1
WP_001341641.1\|3589034_3589733_-\|tail	phage minor tail protein L	Q9EYE3	Enterobacteria_phage	7.6e-130	97.4
WP_000807927.1\|3589732_3590074_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	4.3e-62	98.2
WP_106875234.1\|3590066_3593309_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	95.8
WP_001513217.1\|3593356_3593566_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_001030067.1\|3593661_3594036_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	1.7e-64	99.2
WP_001275471.1\|3594041_3594758_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	3.9e-129	99.6
WP_000133388.1\|3594823_3595168_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|3595164_3595611_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|3595607_3595958_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125984.1\|3595968_3596295_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001063025.1\|3598821_3599043_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173032.1\|3599087_3601025_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.5
WP_001341975.1\|3601088_3602750_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.5
WP_000958402.1\|3602746_3603310_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	4.0e-89	98.4
WP_001375434.1\|3603601_3603967_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	5.3e-66	99.2
WP_032321890.1\|3604008_3604233_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.8e-20	90.6
WP_001303878.1\|3604314_3604629_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001208681.1\|3605156_3605342_-	membrane protein	A0A1U9AJA4	Stx1_converting_phage	2.9e-20	78.7
WP_000075132.1\|3605558_3606056_-	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000411802.1\|3606055_3606262_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000874350.1\|3606709_3608560_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_001339373.1\|3609377_3609530_-	restriction endonuclease subunit M	A0A2R2Z327	Escherichia_phage	3.4e-19	98.0
3609630:3609645	attL	NA	NA	NA	NA
WP_001047129.1\|3609839_3610592_-	antitermination protein	K7PGU5	Enterobacteria_phage	7.6e-136	98.8
WP_001428967.1\|3610605_3611595_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-192	98.8
WP_001061413.1\|3611602_3612400_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.2
WP_000767136.1\|3612419_3612809_-	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.6e-68	99.2
WP_000210170.1\|3612805_3613132_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_001341555.1\|3613128_3613782_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_001447903.1\|3613781_3614276_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.3e-83	96.3
WP_000061518.1\|3614272_3615091_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	1.1e-122	99.3
WP_000620696.1\|3615087_3615312_-	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_001087342.1\|3615308_3616460_-	peptidase	K7PLX4	Enterobacteria_phage	6.9e-205	96.3
WP_000521508.1\|3616456_3617008_-	hypothetical protein	A0A291AWW8	Escherichia_phage	4.5e-101	100.0
WP_000649477.1\|3617051_3617252_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000859462.1\|3617342_3618017_+	LexA family transcriptional repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
WP_000135680.1\|3618683_3619046_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081319.1\|3619111_3619936_+	YfdQ family protein	Q8SBF9	Shigella_phage	5.0e-149	98.9
WP_000008174.1\|3620064_3620601_+	5'-deoxynucleotidase	A5LH62	Enterobacteria_phage	2.8e-100	99.4
WP_000335005.1\|3620591_3621470_+	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	1.9e-170	94.9
WP_000158004.1\|3621466_3621670_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.2e-31	95.5
WP_000476199.1\|3621662_3621902_+	hypothetical protein	S5MQM0	Escherichia_phage	3.7e-36	96.2
WP_000034210.1\|3621898_3622228_+	ead/Ea22-like family protein	A0A0H4ISY5	Shigella_phage	1.1e-25	37.5
WP_000206753.1\|3622229_3623093_+	DUF551 domain-containing protein	A0A088CE95	Shigella_phage	3.2e-69	53.6
WP_000457722.1\|3623177_3623420_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	1.8e-30	82.5
WP_000557643.1\|3623423_3623570_+	hypothetical protein	A0A0P0ZDP5	Stx2-converting_phage	1.7e-20	90.9
WP_000516611.1\|3623742_3624918_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	4.6e-204	91.2
WP_001431537.1\|3625400_3626309_+	DUF4760 domain-containing protein	A0A1B5FPC5	Escherichia_phage	2.3e-171	100.0
WP_001341819.1\|3626607_3627837_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.5e-234	100.0
WP_000448925.1\|3627875_3628292_+	hypothetical protein	A0A1B5FPM5	Escherichia_phage	1.1e-72	100.0
WP_000214985.1\|3628363_3630112_-	hypothetical protein	A0A1B5FPH1	Escherichia_phage	0.0e+00	100.0
WP_000577251.1\|3630113_3631832_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	6.5e-308	100.0
WP_000169527.1\|3632846_3633146_-\|transposase	transposase	NA	NA	NA	NA
3639898:3639913	attR	NA	NA	NA	NA

DBSCAN-SWA_17

3704623 : 3711763

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3704623_3707185_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141347.1\|3707290_3707947_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.6e-50	47.2
WP_001272549.1\|3707997_3708795_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.9e-70	56.3
WP_000847985.1\|3708960_3709869_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|3709865_3711128_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3711124_3711763_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_18

3863817 : 3871766

Stx2-converting_phage(42.86%)

integrase,transposase

attL 3861774:3861790|attR 3870859:3870875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3861774:3861790	attL	NA	NA	NA	NA
WP_000381395.1\|3863817_3865389_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|3865408_3865756_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001339397.1\|3865755_3866433_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000082600.1\|3866827_3867556_-	Rha family transcriptional regulator	B5AX29	Iodobacteriophage	7.1e-14	41.2
WP_000852869.1\|3868464_3869124_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	3.6e-33	33.9
WP_000935135.1\|3869116_3870724_-\|integrase	site-specific integrase	A0A059XK29	uncultured_phage	4.3e-11	28.0
WP_001272558.1\|3871010_3871766_-	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.1e-12	36.8
3870859:3870875	attR	NA	NA	NA	NA

DBSCAN-SWA_19

4920371 : 4933704

Enterobacteria_phage(66.67%)

integrase,transposase

attL 4919865:4919887|attR 4933865:4933887

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4919865:4919887	attL	NA	NA	NA	NA
WP_000783645.1\|4920371_4922705_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.6
WP_000856729.1\|4922719_4923040_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001339397.1\|4923195_4923873_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|4923872_4924220_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|4924239_4925811_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000459320.1\|4925886_4926342_-	hypothetical protein	Q7M298	Enterobacteria_phage	6.1e-64	98.2
WP_001244665.1\|4926334_4926622_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000980227.1\|4926614_4927214_-	ash family protein	Q7M2A7	Enterobacteria_phage	6.0e-51	81.8
WP_001149160.1\|4927210_4927477_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_001283024.1\|4928028_4928763_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	5.7e-128	98.0
WP_000638629.1\|4928759_4929260_+	transactivation protein	NA	NA	NA	NA
WP_000446132.1\|4929333_4929906_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3
WP_000186475.1\|4930233_4930659_-	hypothetical protein	NA	NA	NA	NA
WP_000119815.1\|4930655_4932515_-	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	1.8e-13	22.4
WP_001218979.1\|4932534_4933704_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.7e-198	88.1
4933865:4933887	attR	NA	NA	NA	NA

DBSCAN-SWA_20

5350068 : 5397991

Vibrio_phage(20.0%)

integrase,tRNA,transposase,protease

attL 5331039:5331053|attR 5357385:5357399

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5331039:5331053	attL	NA	NA	NA	NA
WP_001375513.1\|5350068_5351688_+\|transposase	ISL3-like element ISEc38 family transposase	NA	NA	NA	NA
WP_000704132.1\|5351684_5353256_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.8e-295	98.6
WP_001218841.1\|5353372_5354638_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.7e-77	38.3
WP_001188520.1\|5355017_5355593_-	transcriptional regulator	NA	NA	NA	NA
WP_000068905.1\|5355629_5357327_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_000883338.1\|5357302_5357641_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
5357385:5357399	attR	NA	NA	NA	NA
WP_000961959.1\|5357756_5359058_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000069437.1\|5359175_5360612_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_001267448.1\|5360948_5361425_+	membrane protein FxsA	NA	NA	NA	NA
WP_000015837.1\|5361440_5362697_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001026276.1\|5362972_5363266_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000729117.1\|5363309_5364956_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_000558209.1\|5365093_5365447_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_000399685.1\|5365699_5366680_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001008073.1\|5366928_5367798_-	hypothetical protein	NA	NA	NA	NA
WP_000940530.1\|5368187_5369216_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000257278.1\|5369257_5369824_+	elongation factor P	NA	NA	NA	NA
WP_000977757.1\|5369875_5370001_+	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000239596.1\|5370111_5370258_+	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000118482.1\|5370439_5370757_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_001238378.1\|5370753_5371287_-	lipocalin Blc	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_001299193.1\|5371375_5372509_-	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_001299198.1\|5372571_5372931_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000208757.1\|5372941_5373337_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_000829498.1\|5373347_5374082_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_001192991.1\|5374074_5375883_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000004771.1\|5376207_5377185_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001346081.1\|5377403_5378906_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_000342867.1\|5378957_5379272_+	hypothetical protein	NA	NA	NA	NA
WP_001276180.1\|5379268_5379583_+	YjeO family protein	NA	NA	NA	NA
WP_001236850.1\|5379611_5382935_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_000934920.1\|5382956_5383925_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_000041970.1\|5384021_5385074_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_001295188.1\|5385168_5385714_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_100699686.1\|5386577_5386631_+	hypothetical protein	NA	NA	NA	NA
WP_001294203.1\|5386613_5387753_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_001307537.1\|5387751_5389299_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_000981977.1\|5389270_5389732_+\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_000990321.1\|5389750_5391088_+	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_001122519.1\|5391097_5392945_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.3
WP_001280349.1\|5392937_5393888_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051883.1\|5393973_5394282_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460361.1\|5394358_5395639_+	GTPase HflX	NA	NA	NA	NA
WP_000312488.1\|5395724_5396984_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|5396986_5397991_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_21

5409703 : 5470142

Stx2-converting_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000811566.1\|5409703_5409979_-\|protease	protease activator YjfN	NA	NA	NA	NA
WP_000254642.1\|5410127_5410457_-	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000569731.1\|5410638_5411388_+	esterase	NA	NA	NA	NA
WP_000133631.1\|5411384_5412140_-	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_001295191.1\|5412247_5413312_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_001341647.1\|5413666_5415064_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000218360.1\|5415079_5415385_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_000056760.1\|5415872_5416523_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000949511.1\|5416532_5417387_+	L-ribulose-5-phosphate 3-epimerase UlaE	NA	NA	NA	NA
WP_001170812.1\|5417386_5418073_+	L-ribulose-5-phosphate 4-epimerase UlaF	NA	NA	NA	NA
WP_000492914.1\|5418201_5418477_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001216676.1\|5418803_5419199_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_001296681.1\|5419205_5419520_+	primosomal replication protein N	NA	NA	NA	NA
WP_000135199.1\|5419524_5419752_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_001196062.1\|5419793_5420243_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_001341645.1\|5420313_5421108_-	DUF2686 family protein	NA	NA	NA	NA
WP_072097616.1\|5421547_5422162_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.8e-42	59.1
WP_000440544.1\|5422169_5423378_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	6.4e-209	93.8
WP_001119478.1\|5423512_5424151_-	cell division protein YtfB	NA	NA	NA	NA
WP_000211225.1\|5424369_5424990_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_000228344.1\|5425298_5426702_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_001062220.1\|5426968_5427403_+	hypothetical protein	NA	NA	NA	NA
WP_001345317.1\|5427501_5428569_+	hypothetical protein	NA	NA	NA	NA
WP_000331456.1\|5428815_5429478_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_001296686.1\|5429585_5430551_-	DMT family transporter	NA	NA	NA	NA
WP_000560553.1\|5430658_5431519_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_000084622.1\|5431607_5431988_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000589460.1\|5432116_5434060_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000886909.1\|5434249_5434990_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000175289.1\|5434979_5435537_-	YtfJ family protein	NA	NA	NA	NA
WP_000689228.1\|5435861_5436068_+	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000935042.1\|5436129_5437473_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001295196.1\|5437795_5438434_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_001269327.1\|5438639_5440373_+	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_000060926.1\|5440369_5444149_+	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001219160.1\|5444151_5444493_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_001223208.1\|5444704_5444956_+	type II toxin-antitoxin system antitoxin ChpS	NA	NA	NA	NA
WP_000239579.1\|5444949_5445300_+	endoribonuclease toxin ChpB	NA	NA	NA	NA
WP_000055075.1\|5445379_5445910_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.2e-55	63.3
WP_000265933.1\|5446219_5447176_+	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000205813.1\|5447315_5448818_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	30.3
WP_001296689.1\|5448831_5449854_+	ABC transporter permease	NA	NA	NA	NA
WP_000596015.1\|5449840_5450836_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_000853753.1\|5450868_5451867_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_001219792.1\|5452042_5453416_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000166267.1\|5453503_5454055_-	ribosome-associated protein	NA	NA	NA	NA
WP_001162171.1\|5454148_5455501_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_000099148.1\|5455805_5457344_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-295	99.6
WP_000612626.1\|5457392_5457740_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839179.1\|5457736_5458141_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_001106238.1\|5458576_5459041_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	K4F9T1	Cronobacter_phage	1.1e-52	57.1
WP_000187778.1\|5459199_5461338_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.5e-266	64.5
WP_001341327.1\|5461731_5463387_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_001181312.1\|5464911_5465859_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001387276.1\|5466043_5466097_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471889.1\|5466237_5468934_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_000399685.1\|5469161_5470142_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

5480591 : 5526961

Stx2-converting_phage(28.57%)

integrase,tRNA,transposase

attL 5477949:5477964|attR 5515664:5515679

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5477949:5477964	attL	NA	NA	NA	NA
WP_000416407.1\|5480591_5483447_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_000786398.1\|5483446_5483890_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|5484244_5485756_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584109.1\|5486022_5487123_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|5487122_5488205_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_001332879.1\|5488323_5489826_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	2.1e-84	44.8
WP_000061768.1\|5489955_5490975_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.9e-44	30.4
WP_000772685.1\|5491418_5492681_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.8e-74	40.3
WP_000356577.1\|5492924_5493764_-	hypothetical protein	NA	NA	NA	NA
WP_032344740.1\|5493902_5495489_-	hypothetical protein	NA	NA	NA	NA
WP_001339397.1\|5495778_5496456_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|5496455_5496803_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|5496822_5498394_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_001185332.1\|5498703_5498976_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	8.3e-08	46.9
WP_000991130.1\|5498977_5499532_-	hypothetical protein	NA	NA	NA	NA
WP_000214377.1\|5499528_5500281_-	hypothetical protein	NA	NA	NA	NA
WP_001084853.1\|5501195_5501456_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.6e-24	67.5
WP_000761643.1\|5501452_5502001_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.9e-29	64.8
WP_001014979.1\|5502000_5502225_+	hypothetical protein	NA	NA	NA	NA
WP_000842358.1\|5502221_5502545_+	DUF5375 family protein	NA	NA	NA	NA
WP_000016235.1\|5502559_5504893_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	72.8
WP_000594911.1\|5505798_5506623_+	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5
WP_000916596.1\|5506671_5507052_-	hypothetical protein	Q858R9	Enterobacteria_phage	1.1e-37	60.8
WP_000336726.1\|5507185_5508004_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000088311.1\|5508039_5508342_-\|transposase	transposase	NA	NA	NA	NA
WP_000177060.1\|5509864_5510122_+	hypothetical protein	NA	NA	NA	NA
WP_000175457.1\|5510679_5511447_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000684856.1\|5511447_5512404_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000125190.1\|5512400_5513399_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000879164.1\|5513395_5514298_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000188267.1\|5514342_5516667_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
5515664:5515679	attR	NA	NA	NA	NA
WP_001068910.1\|5516753_5517707_-	fec operon regulator FecR	NA	NA	NA	NA
WP_001283626.1\|5517703_5518225_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_000555341.1\|5519975_5520233_+	hypothetical protein	NA	NA	NA	NA
WP_000823243.1\|5520965_5522324_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000998019.1\|5522562_5523948_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3
WP_000612591.1\|5523997_5524345_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171523.1\|5524341_5524722_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_001221615.1\|5525076_5525511_-	hypothetical protein	NA	NA	NA	NA
WP_000088311.1\|5525804_5526107_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|5526142_5526961_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028115

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8065 : 82357

Stx2-converting_phage(44.44%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001164205.1\|8065_8848_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.2e-54	97.3
WP_000465041.1\|8849_9263_-	hypothetical protein	NA	NA	NA	NA
WP_001261287.1\|9822_10053_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044768.1\|10049_10466_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001165114.1\|10627_11173_-	hypothetical protein	NA	NA	NA	NA
WP_000088311.1\|11240_11543_+\|transposase	transposase	Q716C1	Shigella_phage	1.1e-05	31.3
WP_000336726.1\|11578_12397_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000704534.1\|13201_14062_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	1.3e-09	23.5
WP_001066949.1\|14189_14576_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001341423.1\|14629_15304_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.7e-12	30.8
WP_000631725.1\|15300_15648_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.2e-44	72.9
WP_012917687.1\|15651_17220_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-158	56.0
WP_000154135.1\|17879_18545_-	hypothetical protein	NA	NA	NA	NA
WP_000335839.1\|18685_19327_-	transcription termination factor NusG	NA	NA	NA	NA
WP_000907857.1\|20035_21067_+	replication initiation protein	NA	NA	NA	NA
WP_000581688.1\|22026_31527_-	toxin B	NA	NA	NA	NA
WP_001443774.1\|31641_31872_-\|transposase	transposase	NA	NA	NA	NA
WP_000422675.1\|34998_35475_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.0e-45	90.7
WP_000937603.1\|39454_40642_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000091308.1\|40641_41007_-	hypothetical protein	NA	NA	NA	NA
WP_012917687.1\|41830_43399_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-158	56.0
WP_000631725.1\|43402_43750_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.2e-44	72.9
WP_001341423.1\|43746_44421_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.7e-12	30.8
WP_001341442.1\|44474_44702_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	6.2e-33	100.0
WP_000361610.1\|44864_45842_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.4e-100	59.2
WP_085953785.1\|46647_47860_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.5e-168	99.7
WP_086163899.1\|47826_47925_+	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	2.5e-07	100.0
WP_101981703.1\|48033_48246_+	hypothetical protein	NA	NA	NA	NA
WP_000387727.1\|48233_50243_+	catalase/peroxidase KatP	NA	NA	NA	NA
WP_001172748.1\|50286_50676_+	cytochrome b562 family protein	NA	NA	NA	NA
WP_000445934.1\|51636_52032_-	plasmid stabilization protein	NA	NA	NA	NA
WP_000921957.1\|52031_52991_-	plasmid stabilization protein	A0A222YXF2	Escherichia_phage	5.4e-62	40.9
WP_077249722.1\|53263_54166_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_012680995.1\|54162_54474_+	hypothetical protein	NA	NA	NA	NA
WP_000086167.1\|54549_55233_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.3e-28	37.4
WP_001443814.1\|55232_55451_+	hypothetical protein	NA	NA	NA	NA
WP_000274418.1\|55462_55897_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001341455.1\|55941_56424_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276261.1\|56420_57140_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_032313270.1\|57416_57734_+	hypothetical protein	A0A0N7KZV3	Escherichia_phage	4.5e-05	55.8
WP_000117628.1\|58195_58696_+	antirestriction protein ArdA	NA	NA	NA	NA
WP_162137195.1\|58697_59318_-	hypothetical protein	NA	NA	NA	NA
WP_000218854.1\|59423_59858_+	hypothetical protein	NA	NA	NA	NA
WP_001247865.1\|59950_60217_+	hypothetical protein	NA	NA	NA	NA
WP_000038351.1\|60281_61172_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	4.4e-66	53.8
WP_077776889.1\|61195_61417_+	hypothetical protein	NA	NA	NA	NA
WP_000148286.1\|61447_61699_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001341408.1\|62277_63126_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000157095.1\|63211_63547_-	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
WP_001291056.1\|63778_64111_+	hypothetical protein	NA	NA	NA	NA
WP_000991399.1\|64122_66843_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_001341409.1\|67063_67384_-	hypothetical protein	NA	NA	NA	NA
WP_000088311.1\|67422_67725_+\|transposase	transposase	Q716C1	Shigella_phage	1.1e-05	31.3
WP_106875247.1\|68151_69365_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	4.6e-167	99.0
WP_136138333.1\|69363_69777_+	DUF1449 family protein	NA	NA	NA	NA
WP_000114001.1\|70075_70333_+	hypothetical protein	NA	NA	NA	NA
WP_001034100.1\|70580_74483_-\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	9.5e-238	40.4
WP_136139077.1\|75420_75840_-	DUF1449 family protein	NA	NA	NA	NA
WP_001341423.1\|75770_76445_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.7e-12	30.8
WP_000631725.1\|76441_76789_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.2e-44	72.9
WP_012917687.1\|76792_78361_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-158	56.0
WP_000937603.1\|78639_79827_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001344870.1\|79777_80191_-	hypothetical protein	NA	NA	NA	NA
WP_000612591.1\|80427_80775_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000997978.1\|80824_82357_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	4.6e-297	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028116

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028115

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection