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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028343 Vibrio parahaemolyticus isolate R13 chromosome 2, complete sequence 2 crisprs cas3,DEDDh,WYL,csa3 0 0 143 0
NZ_CP028346 Vibrio parahaemolyticus isolate R13 plasmid pVpR13_71Kb, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP028342 Vibrio parahaemolyticus isolate R13 chromosome 1, complete sequence 0 crisprs DEDDh,DinG,cas3,csx1,csa3 0 0 3 0
NZ_CP028344 Vibrio parahaemolyticus isolate R13 plasmid pVpR13_19Kb, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP028345 Vibrio parahaemolyticus isolate R13 plasmid pVpR13_55Kb, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP028343
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028343_1 705205-705302 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028343_2 1243459-1243592 Unclear NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 5754 3 Monodon_slow_growth-associated_virus(100.0%) NA NA
DBSCAN-SWA_2 10209 : 12567 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_3 18459 : 32547 12 Tupanvirus(20.0%) holin NA
DBSCAN-SWA_4 40435 : 48581 5 Pike_perch_iridovirus(33.33%) NA NA
DBSCAN-SWA_5 66272 : 67094 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_6 72376 : 73177 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_7 76974 : 80104 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 83964 : 85376 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_9 90791 : 93728 3 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_10 97817 : 114980 12 Bacillus_phage(16.67%) tRNA NA
DBSCAN-SWA_11 119784 : 120249 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_12 134100 : 137448 4 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_13 141829 : 142453 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_14 147611 : 154925 7 Hokovirus(33.33%) transposase NA
DBSCAN-SWA_15 168568 : 169891 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_16 176040 : 177363 1 Ostreococcus_tauri_virus(100.0%) NA NA
DBSCAN-SWA_17 182903 : 188052 5 Golden_Marseillevirus(33.33%) NA NA
DBSCAN-SWA_18 191387 : 194284 3 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_19 205382 : 211738 7 Morganella_phage(25.0%) protease NA
DBSCAN-SWA_20 230281 : 231400 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_21 247088 : 249532 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_22 264755 : 271645 5 Bacillus_phage(75.0%) NA NA
DBSCAN-SWA_23 293546 : 300118 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_24 307406 : 315388 6 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_25 321967 : 329645 6 Organic_Lake_phycodnavirus(25.0%) NA NA
DBSCAN-SWA_26 334863 : 340835 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_27 347966 : 349595 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_28 352964 : 356866 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_29 369592 : 371983 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_30 377464 : 380137 3 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_31 389954 : 390992 1 Neodiprion_lecontei_nucleopolyhedrovirus(100.0%) protease NA
DBSCAN-SWA_32 415078 : 415456 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_33 419928 : 424173 3 Providencia_phage(33.33%) NA NA
DBSCAN-SWA_34 446381 : 447539 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_35 451546 : 453010 1 Apis_mellifera_filamentous_virus(100.0%) NA NA
DBSCAN-SWA_36 468902 : 469277 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_37 481228 : 483682 1 Iris_mild_mosaic_virus(100.0%) NA NA
DBSCAN-SWA_38 490574 : 490871 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_39 506842 : 508459 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_40 516856 : 527646 7 Salmonella_phage(20.0%) NA NA
DBSCAN-SWA_41 541264 : 552985 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_42 563577 : 565146 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_43 568505 : 572197 4 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_44 576440 : 577679 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_45 583287 : 584751 1 Ostreococcus_tauri_virus(100.0%) NA NA
DBSCAN-SWA_46 592536 : 597888 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_47 605293 : 607664 2 Bordetella_phage(50.0%) NA NA
DBSCAN-SWA_48 616200 : 618315 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_49 628186 : 636354 6 Burkholderia_virus(20.0%) tRNA NA
DBSCAN-SWA_50 640331 : 646812 6 Planktothrix_phage(25.0%) NA NA
DBSCAN-SWA_51 650266 : 650965 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_52 654360 : 659274 5 Enterobacteria_phage(25.0%) NA NA
DBSCAN-SWA_53 664268 : 665126 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_54 674693 : 675176 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_55 682216 : 687874 5 Orgyia_leucostigma_nucleopolyhedrovirus(50.0%) NA NA
DBSCAN-SWA_56 692298 : 706163 14 Diadromus_pulchellus_ascovirus(20.0%) NA NA
DBSCAN-SWA_57 721026 : 722205 1 Agrotis_ipsilon_multiple_nucleopolyhedrovirus(100.0%) NA NA
DBSCAN-SWA_58 733660 : 740553 9 Infectious_spleen_and_kidney_necrosis_virus(33.33%) NA NA
DBSCAN-SWA_59 746227 : 748897 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_60 752671 : 757763 4 Diadromus_pulchellus_ascovirus(50.0%) NA NA
DBSCAN-SWA_61 762676 : 763435 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_62 775847 : 781703 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_63 793045 : 802063 7 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_64 806948 : 807839 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_65 832577 : 844519 9 Pacmanvirus(14.29%) NA NA
DBSCAN-SWA_66 853918 : 854605 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_67 861495 : 864637 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_68 867881 : 869915 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_69 879126 : 880245 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_70 888680 : 889658 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_71 898808 : 900560 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_72 919785 : 927770 9 Hokovirus(20.0%) NA NA
DBSCAN-SWA_73 952043 : 960663 9 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_74 967507 : 969532 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_75 981033 : 984192 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_76 988293 : 989313 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_77 993942 : 995526 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_78 999825 : 1000842 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_79 1010043 : 1019653 7 Yersinia_phage(33.33%) tRNA NA
DBSCAN-SWA_80 1024926 : 1027304 3 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_81 1034355 : 1035924 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_82 1054921 : 1055752 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_83 1061732 : 1062515 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_84 1069786 : 1070701 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_85 1077981 : 1079904 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_86 1085173 : 1085644 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_87 1099015 : 1100587 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_88 1112104 : 1114326 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_89 1130990 : 1136288 4 Cedratvirus(33.33%) transposase NA
DBSCAN-SWA_90 1153471 : 1155343 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_91 1159762 : 1162919 2 Arthrobacter_phage(50.0%) NA NA
DBSCAN-SWA_92 1166267 : 1166882 1 Cronobacter_phage(100.0%) NA NA
DBSCAN-SWA_93 1175081 : 1179904 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_94 1188734 : 1192895 4 Lactococcus_phage(33.33%) NA NA
DBSCAN-SWA_95 1196252 : 1201017 4 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_96 1210968 : 1219044 8 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_97 1224267 : 1225560 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_98 1232366 : 1235624 2 Amsacta_moorei_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_99 1239404 : 1253634 10 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_100 1261472 : 1263209 2 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_101 1270725 : 1272111 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_102 1276602 : 1281126 6 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_103 1295059 : 1297696 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_104 1301854 : 1302106 1 Salicola_phage(100.0%) NA NA
DBSCAN-SWA_105 1324785 : 1331511 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_106 1334868 : 1338273 2 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_107 1341733 : 1345745 3 Tetraselmis_virus(50.0%) NA NA
DBSCAN-SWA_108 1351447 : 1353861 3 Indivirus(50.0%) NA NA
DBSCAN-SWA_109 1364868 : 1372425 6 Lactococcus_phage(33.33%) NA NA
DBSCAN-SWA_110 1383383 : 1384292 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_111 1398211 : 1404996 4 Hokovirus(50.0%) NA NA
DBSCAN-SWA_112 1409503 : 1410478 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_113 1433084 : 1434935 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_114 1440901 : 1441438 1 Ochrobactrum_phage(100.0%) NA NA
DBSCAN-SWA_115 1444704 : 1445211 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_116 1450154 : 1452703 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_117 1458254 : 1466033 6 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_118 1471505 : 1474565 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_119 1486133 : 1486868 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_120 1498814 : 1503302 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_121 1507081 : 1507555 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_122 1511561 : 1515498 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_123 1526740 : 1527760 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_124 1539322 : 1540162 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_125 1546753 : 1547446 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_126 1554390 : 1557420 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_127 1572483 : 1573146 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_128 1579066 : 1584121 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_129 1592987 : 1601291 5 Vibrio_phage(66.67%) NA NA
DBSCAN-SWA_130 1608393 : 1609347 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_131 1635067 : 1639996 7 Salmonella_phage(25.0%) NA NA
DBSCAN-SWA_132 1649461 : 1650382 1 Vibrio_phage(100.0%) transposase NA
DBSCAN-SWA_133 1668170 : 1669433 1 Archaeal_BJ1_virus(100.0%) NA NA
DBSCAN-SWA_134 1674123 : 1674558 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_135 1708805 : 1710437 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_136 1718263 : 1720710 2 Aphanizomenon_phage(50.0%) NA NA
DBSCAN-SWA_137 1727146 : 1728808 2 Morganella_phage(50.0%) NA NA
DBSCAN-SWA_138 1732729 : 1740252 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_139 1758694 : 1760836 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_140 1769998 : 1770835 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_141 1782782 : 1784696 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_142 1791414 : 1802266 12 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_143 1812160 : 1812736 1 Clostridioides_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP028342
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 252261 : 340326 59 uncultured_Mediterranean_phage(20.0%) transposase,integrase,protease,tRNA attL 277793:277809|attR 305314:305330
DBSCAN-SWA_2 468545 : 483216 13 uncultured_Mediterranean_phage(20.0%) tRNA NA
DBSCAN-SWA_3 2499207 : 2505909 7 Staphylococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage