CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP029361	Streptomyces globisporus strain TFH56 chromosome, complete genome	11 crisprs	csa3,DEDDh,DinG,cas3,c2c9_V-U4,WYL,cas4	2	9	1
NZ_CP029363	Streptomyces globisporus strain TFH56 plasmid pTFSG2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP029362	Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029361_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_1

413472-413629

Orphan

Consensus_repeat	Method
CCTCGGTGAGGGGTGCCGTGGCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP029361_1

>merge|NZ_CP029361|1|413472-413629|CRISPRCasFinder
CCTCGGTGAGGGGTGCCGTGGCGGGGGACTCCTCGGCCGGGTGTACCTCGGTGGTGAGTGCCGTTACGGGGATCCCCTCGGTGAAGGGTGCCGTGGCGAGGGGTGCCTCGGCCCGGGGTGCGTCGGCCGGCCCGGCACCCGTGAGGGGTGCGGTCACG

>NZ_CP029361|1|1|413472-413629|CRISPRCasFinder
CCTCGGTGAGGGGTGCCGTGGCG	GGGGACTCCTCGGCCGGGTGTA
CCTCGGTGGTGAGTGCCGTTACG	GGGATCCCCTCGGTGAAGGGTG
CCGTGGCGAGGGGTGCCTCGGCC	CGGGGTGCGTCGGCCGGCCCGG
CACCCGTGAGGGGTGCGGTCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_030800340.1\|407161_407332_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NZ_CP029361.1\|WP_044369059.1\|402281_403568_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP029361.1\|WP_044369070.1\|417548_422729_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030800344.1\|408797_409442_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029361.1\|WP_044369073.1\|425577_427053_+\|tetracycline-resistance-MFS-efflux-pump	unknown	unknown	gnl\|CDD\|129794
NZ_CP029361.1\|WP_030800374.1\|432479_432878_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NZ_CP029361.1\|WP_030716979.1\|423833_424613_-\|serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP029361.1\|WP_044369076.1\|428304_429468_-\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_CP029361.1\|WP_044369071.1\|422725_423586_-\|DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP029361.1\|WP_044369067.1\|416316_417552_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|336785
NZ_CP029361.1\|WP_044369074.1\|427049_428267_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_CP029361.1\|WP_030800326.1\|400991_401804_+\|amidinotransferase	unknown	unknown	gnl\|CDD\|224747
NZ_CP029361.1\|WP_078955498.1\|403771_406198_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|276938
NZ_CP029361.1\|WP_030800329.1\|401864_402278_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223556
NZ_CP029361.1\|WP_044369062.1\|407431_408259_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP029361.1\|WP_044369065.1\|410353_412333_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP029361.1\|WP_030800360.1\|424769_425417_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP029361.1\|WP_030800345.1\|409767_410322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044369061.1\|406338_407040_+\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|377205
NZ_CP029361.1\|WP_078955500.1\|430907_432353_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_030800340.1\|407161_407332_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	8.1456e-13
NZ_CP029361.1\|WP_044369059.1\|402281_403568_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.25221e-46
NZ_CP029361.1\|WP_030800344.1\|408797_409442_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.04087e-11
NZ_CP029361.1\|WP_044369073.1\|425577_427053_+\|tetracycline-resistance-MFS-efflux-pump	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.27633e-47
NZ_CP029361.1\|WP_030800374.1\|432479_432878_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	5.22382e-35
NZ_CP029361.1\|WP_030716979.1\|423833_424613_-\|serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	2.63811e-71
NZ_CP029361.1\|WP_044369076.1\|428304_429468_-\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP029361.1\|WP_044369067.1\|416316_417552_-\|AAA-family-ATPase	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	5.49861e-42
NZ_CP029361.1\|WP_044369074.1\|427049_428267_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP029361.1\|WP_044369071.1\|422725_423586_-\|DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	4.05001e-33
NZ_CP029361.1\|WP_078955498.1\|403771_406198_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	1.50905e-31
NZ_CP029361.1\|WP_030800329.1\|401864_402278_+\|hypothetical-protein	gnl\|CDD\|223556	COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis].	1.59191e-08
NZ_CP029361.1\|WP_044369062.1\|407431_408259_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.83366e-14
NZ_CP029361.1\|WP_044369065.1\|410353_412333_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	2.00625e-07
NZ_CP029361.1\|WP_030800360.1\|424769_425417_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.88904e-07
NZ_CP029361.1\|WP_030800326.1\|400991_401804_+\|amidinotransferase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	3.3519e-69
NZ_CP029361.1\|WP_044369061.1\|406338_407040_+\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|377205	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyze 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family.	3.07993e-35
NZ_CP029361.1\|WP_078955500.1\|430907_432353_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	8.60721e-116

>NZ_CP029361.1|WP_044369065.1|410353_412333_-|hypothetical-protein
MNAARLPSVAPEVTATLVEGLSPRLRKRLDAAVTKLAARPTHRDGDTTTIDVDDETELRLHAPGGVVARVEDITCRCLLAPACVHRAAAACAAPAADLAPEPAEQATPEAPGPASATPPAAMLGPDAARSLGLDVAPASGPGTAPAPTTDTAANAALGLAPQATPNPAPDLASSPETASPDQRAAADVLWAAGAAVLEAGVDGAGAVTQSALLRAAHTARLRHLPRAAGAALSVVTLLRAARAGDPSYRTADLVTALAELLGTAHRVGTASGAEMAAIRGRVRRPYSPDGSLRLYGLFTEPVVTDSGHGGVRTWVAGADGRLFTVGDVAPGGAGRALGVADRAVRLGDSALTHRELGRAGLAVSGATVSPDGRLGAGKAVKAVTARGVAWTEPPLAALWETPPAEQAARALRSTSRYADRDGTGSDLLFLHVELLGAVREPGGTCLLALCEGGVRVRLTVSDDDPALAHRDNLALLAAAPGARLRIIGRLIPATHPRLTLLACTHPTGEGTVDLGLDRLRRADLPDPSASAHFAPPQTAGPGGSSPLYLLERRVEQTVAAGRAALGLLGDVTAETRRIRRGGLPTAAALLTALSASAAQRERDLFGRLLPADTDGFAAYWLAAARYTAAVSESLCAAAWNPMDEDPAAVPPVPVHGAAG
>NZ_CP029361.1|WP_030800345.1|409767_410322_+|hypothetical-protein
MTLHADMTELLAAAGILGVDVDNAVADEHVRWSAYRRVVLVIASSPSRDRDRAIVATLLRDPVEMVAKSAVVALVDEIAMRAAGPAEFREWASGLLPEIDGLEAEGHRDFIRRRIRDWLFHLSVQDGHVPTTAELAEVTDWMQRTLAEGSRSPAVLALLAESGRRKKTRNVAENRARSRELKPR
>NZ_CP029361.1|WP_030800344.1|408797_409442_-|TetR/AcrR-family-transcriptional-regulator
MTQDRGEQTFQRIVQAAGIVIDRDGYAGASTPAILRLANVSRSGFYHHFASKEDLGDEILARQHTYFQQVSEQMAAGPAPELWLQALVDISHHYTAGLLEDPVLRAAVRLSIEPGPYQTAESYAGSLGAVTGALESAREAEELQDHVEPVETARTLVGCYSGVQMLSLALAERDALHQQVSAMWSLVMPGIARPEIFARLRLGPPRSMGTSPPR
>NZ_CP029361.1|WP_044369062.1|407431_408259_+|pentapeptide-repeat-containing-protein
MSERTSYAAQPGLQSDCGNCFGLCCVALPFSRSSDFPVDKSAGTPCGSLQEDFRCGIHRRLRDQGYNGCTVFDCFGAGQKVSQVTFKGVSWREEPDSARAMYEVFPVVRQLHELLKYVAQALDLSAAGPVHGELRRAYERLDALTRDTAEVLLAVDVDALRGEVNPLLLRASELARAAVPGRKKNHRGAHLMGSRLRGAKLRGASLRGALLIAADLSGSDLRDADLIGADMRDTNLCGADLRGALFLTQPQLNAARGDARTKVPQSLQRPPHWAD
>NZ_CP029361.1|WP_030800340.1|407161_407332_+|50S-ribosomal-protein-L32
MAVPKRKMSRSNTRHRRAQWKATTPQLVPVTIDGTVHQVPQRLVKAYERGLLRPES
>NZ_CP029361.1|WP_044369061.1|406338_407040_+|2-phosphosulfolactate-phosphatase
MDSRFLGIPELTETPSVAVVVDVMRACTVAAWAFARGAEKIVLAESLDDALALKARRPEWVALKDGAPAPGFDAVNSPGLLRSTYLGGRTVIQKTTAGTVGALAVKEASLVLCAGFVVAEATAGFLRQRGCEDVTFVVTGEDGRAEEDLACAQYIAGRVTGAAADATAFVRRAAESRAATELTEGVREGAHRDDLALCLEVDRFPFAMVATLEDSLMVLRPRGVSASTGGTSA
>NZ_CP029361.1|WP_078955498.1|403771_406198_-|helix-turn-helix-domain-containing-protein
MSDTASATADPQGGPGHEDERGTVGPRIQSFRRRAGLSQEAAASRAGISTRALRDIERGRARRPRVHTLRSLAGTLGLSDDELAGLLADARTGPPRDTGLPSLLILGPLVLRRGRTPVPVAGPMLRRLLGLLALKHPEPATQQEITDILWPSGPPRSHPSLIHTYVTQTRRLLGPCGPRSARPPTVVRTPTGYRLEASRNRVDLGHFDELLARAERLHDASDLEARYASLTEALRCWRGPVLADADPVLRRHPAAVAADERRVRAALLHADTALLLRRSGEAVPLLADLVNTEPLHEGLHARLILALAGSGEQAAALQVFTRLRDRLDEELGIEPGTEIRAAHLRVRPRQPVPRRTAHEAPAHREPAHRTESHPTESHPTESHPTESHPTENHPTENHPTENHPTENHPTESHLTEIRRTPADGTAPAGPTPQPAQLPLGARSFVGRRPQMRVLDTLVASDPARRPHIAVVVGAPGVGKTALATHWAHARRDHFPDGQLYVDLRGHSRPPALRPGDVLTQFLRALGAPPHALPAHSPGEDEAAALYRTLLAGKRLLIVLDNARDAEQVRPLLPGARGCAVVVTSRSRLAGLVSSDGARRIALDVLDPDEGRRLLGSIAGSCNVAAEEAAARSLVELCGGLPLAIRIAGANLVARNANIAAHCAELAGAGDGILDRLRIEGDRRSAVRSAFELSYRTLPDEARRMFRLLGQLPGPDLTVDAAAALAGTTPADSAALLARIADAHLVRERAGRFGLDVLLRSYARELIGTDEAHTARRRLMLSRAQGPARRDSGQANCPGSYASSAGSRA
>NZ_CP029361.1|WP_044369059.1|402281_403568_-|MFS-transporter
MEEHRAEHATAVASPPARDGSGGPSSSPGEPAIWSRNFRYYFVARSAGLLSWAMLPVAVAAGLLIDGYGLDTAGYSMAFLVAPFAGLVLFGGVLADRFTARRMMIVADLANLAAHVLLALLFLHGIDHLWQLYALLVVAGTANALFQPGASSTVPLVSRDVQGANGVLRTSEAITGLGGPALAGVLVGFGSTGWVMVISAVAYGASAVCLYVLRLGTVPAPPPGESLWRNLAVGWREFRARSWLWGVIVIWMFYAVLSWGPQLSVAAGVIVPEHGARSFGLINAALGAGTVVGGLLAIRYKPERPLAAGAVAMLAYPLYPLGIVLGLPVWALAAAQVVVGAGIGVWGVMWATSVQTQVPGEMLNRIHAYEVAGSVGMYPIGSALAGPAVGAFGTDQVLLTGVVVSFLTTTALLAARPIRTLRRVPDRR
>NZ_CP029361.1|WP_030800329.1|401864_402278_+|hypothetical-protein
MGRMTTEPRTFPPRALRDVRATYVRQGGCPSFFAQVVADFEPWEQGVEFEVAVTRAVPGWSSEEVSDLHEAFGSGVREELAALGPGTTVAVAVVLRSIKVHEVDSNALAFRHSGRLAVRNALIEAYGPPPRPRRMRP
>NZ_CP029361.1|WP_030800326.1|400991_401804_+|amidinotransferase
MRTARARHYLMCRPTYFDVVYSINPWMDPAKPVDTPLAIAQWERLREVYLSLGHTVDTIDPVPSLPDMVFAANGATVVDGRALVARFRDAERIAEGPAYHNWLRDNGFPELRTAAFVNEGEGDYLLAGDWLLAGTGFRSDPRSHDEAQEYFGRPVIGLTLVDPDYYHLDTALTVLDEKTVAYYPAAFSPGSRSVLERLFPDALLATPADAEVFGLNATSDGYNVVLPQNATELAAQLRERGFNPVGVDLSELLKAGGSVKCCTLELRRDA
>NZ_CP029361.1|WP_044369067.1|416316_417552_-|AAA-family-ATPase
MTNDTTTTPDSSTPDSTTGGVPGQAAAPGHEPRQITPPEDRYATELAFLAAHDSGPRPPGWLLTPRAVVTFVMGSAGDALALPKGARPGAGVPRRLVIEQKFVGERALVERCVVTLAGERGLLLVGEPGTAKSMLSELLSAAVCGTSALTVQGTAGTTEDQLKYGWNYALLLAQGPTEQALVPSPVLTAMTRGAVARVEEVTRCLPEVQDALVSLLSDRRIAVPELAGGDGAQVHAAPGFTLIATANLRDKGVSEMSAALKRRFNFETVGPIGDVDAETALVRRQSRAAVERVGAAYQVDDAVLEALVTAFRDLRDGRSVEGWEVERPSTVMSTAEAVSVAGSLGLAAAYFPGDRDVLSLLPGHLLGVVRKDDPADAARLLGYWDGPVRRRAEQGSATWRALWDLRSVLES
>NZ_CP029361.1|WP_044369070.1|417548_422729_-|hypothetical-protein
MSNTTNTEVNTAAPGSTALPAQNRGRNASALAAEARAASLLDAGAILPAGTTDRDDADHLTARTYTHTALGDRPVVRLVPGTLGEAEDLALEFLGLARTAEAPVVGQVRRETLGFPAWALVNDPANGHHALALVKDIERLGRQAKTRAGAAKEGFDELGTRLGRAVPHFLPTYYEQVARLFLQAENATYAASFFGKAREAERVHGLVVDEDRQRAVFLEFALAGALTVKALRQYVRDLVARLAPADAWGQFRRLLVERCAAGMPPYAALPQDVRTLVKAAGLDRESAERELVADLIGSPGVVRAPASFWATYGSALTGLARADASVRARLLGFFPETFSENGRDTDGESGWLALLADSGAEELLTALPASSDSADPAVSPADWLARWEAYRRRNRATSGRSPRTLDLTARMTDRLRADGRPVELFQGRWQPTADLDLLDLCLASGVPVAEPDDADTGRGHGRSNGFALGQWLADDEPGQRDLAAVAGHPGFRDLLRRNVGGLGDGRGQRLSDAGMAKTAAHPVLSVLLREWLTGCAEEYTAARGLPGLRIALNKLSPFRAVVADVAPEAARLLEEHDVVPLLASTLRTGVFDELGWPALDETYTELAAEAATASRRANNRSQNVGVTDAWPALILSTQERAVVVGPEGVLLRHTLRLPPSTDQWRTPAFRFVDGELLVIWWEDGKQHGYWSHRPAEVFTVGGEQIPRWGRPGLTDEVSVPLPGGGTATGGKALHAGDTTLPPQRAVLADGTGHWREGHQGTQRVWLEYDPVSGTHGRASLPAFLRSGVRDGTRLLAEHCQVLPLQPGLETTPFGTDGTVLGRWVRRTATDPGTAAPADGDRTVAGTPDGHTVALPHPLPDGATVVPLGALTLPGGSRPAVVLRHRSVEAHPEDTDGTGGGLWSVGTDSSGGNDAAGTPYVPPAVYWHALRPRDEQGSGILRKLTEARAHELFDEVAAAVVRHLKAFRAVEEYTGPSSQEMSQEAVARILPEVSDVRLLAGVTAIVRNAVDRAVAVTQYLEPPAPAQPATPRNTARTQGMFFDHEPEHGDDTTLRAATAWGAEKARGSWYGGGSRWTAIRQILAVNHVLGGEPAFGPATPSKVPFTPVDGWQRDAYTVPGESLAWTPLLDKLPELAYRAASEATSAEHRAGLLVLLEALAAGPLADPAGTVRRVELVEPLDAAAPGRTGRPEAVHRLGQVLRKGARTVVILANHGRNSRDDAARWLALDHDPTGAFGPVPGFTLDREHVYRQGIARERLTRLTALVRDKGPAPWRPEAAEAFHTATGIGPLQATALLSAAVEEPGAEALALLGTKTRAFETAQDRLDALPRDERHTVLRALLPADPAELWATGPDVRAAAETWGELLGSLVRVPEELDLDLSGATAASVDLILNAGTRSWLAHGTPVPDGSARPALHRVSARGAVANALTALRTLAYTLPHGHPLRAHLPVGLAALRSRLADPGLVLDLGLDWTESGTSLGTAIRAAHALPESGGAEADGLVRAGTALLLAPGYGDSERLLIRPAGLEGPDDPVFGLVEGTVGPHRTGDLLALRALLGEETDALASSGAPDGFAHHPAQDPTRTVPDLVAEAAASLALSEDAAALYLMLLALPDPTDRNCVRWTEWKPGRIKKARAELAATDLVVEAKRSRAGRTLFLPCGWLERGAPGLPLETWKEGLYPVAGSARTLPHLPVPALYAAAWARVRGGDAPAFEELNTRATRKGRRR
>NZ_CP029361.1|WP_044369071.1|422725_423586_-|DUF4132-domain-containing-protein
MGWVPAGDYEVALEAGKVVCRNGKGRRLKSVPAKLKDDPAVVGLRQLTEWLERHEQRCLSDVEQWMVRSLPVPTAVLARVWPDPAWQAALRDVVVTGADGGVAGFLRDVDPERGLGLVDLDGDTVRITPDIVHVPHPVLLEDLDELREFAVELEVRQNVEQLFREVWHRPVGLAPDATSVDTYAGGVFKELRFLHSRVTQLGYRSRGGYAVCPVVEDGVGVEARIWIGEHDGYDAYGTETGPLGWTDASGRALTAAEVGRVAWSEGMRMAAALYAGRDVEDEERAA
>NZ_CP029361.1|WP_030716979.1|423833_424613_-|serine-protease
MKQLLRALKRCSVVVATVAIAVVGLQPVTASAAPNPVVGGTRAAQGEFPFMVRLSMGCGGALYAKDIVLTAAHCVNGSGNNTSITATAGVVDLQSSSAIKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRRDNANEWVQVGIVSWGYGCARPGYPGVYAEVSTFASAIASAARTL
>NZ_CP029361.1|WP_030800360.1|424769_425417_-|TetR/AcrR-family-transcriptional-regulator
MESVLTEAVALLDEAGPSALTFRALAQRLGGGVASIYWYVASKDELLDRATDHVIGGVLAEIEAIEPGDDPIDDLRAMSLTLFDAILVRPWLGNYFMRNTDVQGNALRLYEKLGQPTLRLKLTARQRFHAVSAITTVVVGSAVDLGQEPPQEVLDGALGRDEFLGRFAATWRELDAQDFPFVHEIVDEFDGHDDIEQFRAALDLTLTGLRLQAGA
>NZ_CP029361.1|WP_044369073.1|425577_427053_+|tetracycline-resistance-MFS-efflux-pump
MTTAILKPPASRTYPSLRAAWIPLAALCLAFFVEMVDNTLLSIALPTIGRDLGGGTTALQWVTGAYSLTFGGLLLTAGSMADRLGRRRVLLVGLAVFGALSLCAVWVTTAGELIALRALLGIAAAAMAPITNSLVFRLFDDKALRMRAMTVMIVVGMSGFILGPLIGGTALAHVRWEWLLVVNAPIAVIAWIGVRLGVSADRPEDLTRDRLDVPGATLSVATIGLACYALTSGVENGWLSVLTLGSIVGAAVAAIAFVLHERRSPAPMLDLRLFSNGTVRGAAVAQIGTSIAMAGVMFGLILHFQYAYGWSPVRAGLANLPLIVTMLLATPLSEGLARRYGHRVACLVGAACLAVALAGLSWGVEHGYLVIALCMVIMTIGLRTVMTICAVALVDAMPANRTSMGTALNDTAQEVGTSVGTAAVGTLIAALVTTQLPAGLWSSDLVASFFHGERIAYAVLAVAVGVIATVGALSLTDSRSVEEAAPAEATS
>NZ_CP029361.1|WP_044369074.1|427049_428267_-|glucose-1-phosphate-adenylyltransferase
MRAGPSVLGIVLAGGEGKRLMPLTADRAKPAVTFGGTYRLVDFVLSNLVNADIMRICVLTQYKSHSLDRHVTTTWRMSSLLGNYVTPVPAQQRLGPRWYLGSADAILQSLNLVHDEQPDYIAVFGADHVYRMDARQMLERHIESGAGVTVAGIKVPRAEASAFGVITPASDGSRVKRFLEKPSDPPGLPDDPTKVFASMGNYVFSTKVLVDALHQDAEDENSVHDMGGSILPMLTERGTAHVYDFDDNHVPGETQRERGYWRDVGSLDSYYEAHMDLISEQPLFSLYNQRWPMYTHASHQAPARFVSGGIAGESIVSPGCVIRGQVTGSVLSPGVIVEQGAVVQGSVLHHGVRVGRGAVVRNAILDKNVDVPPGATIGVNPERDRELYTVSRNGVIALGKGRVVS
>NZ_CP029361.1|WP_044369076.1|428304_429468_-|glycogen-synthase
MKVGLLSREYPPDVYGGAGVHVEFLAQELRALTDLQVHSWGEGASNGVVRHRPGRELDGANDALRAFSVDLSIAAALEGRDLVHSHTWYANLAGHLAGLLHGIPHVMTAHSLEPLRPWKAEQLGGGYALSSWAERTAVESADAVIAVSHGMRADILGCYPQLDPDRVKVVHNGIDTRLYRPVPGVDVLRRLGVDPDRPFVLFVGRITRQKGVPHLLRAAHALDASAQLVLCAGAPDTPEIEAEFRELVGELKRSRDGVHWIPDMLPRPVVIQLLSRAAVFVCPSVYEPLGIVNLEAMACGTPVVASAVGGIPEVVSDGGTGVLVPYEADEPVRFEADLAEAINQVLADPSAARRMGEAGRERAVREFGWDMVARRTLEVYEETVKKV
>NZ_CP029361.1|WP_078955500.1|430907_432353_-|NAD(P)/FAD-dependent-oxidoreductase
MTDAGKISEGSLYDVVVMGAGPVGENVADRARAAGLTTAVVESELVGGECSYWACMPSKALLRPVVARADARRVPGLSAAVQGPLDVGAVLAKRDEETSHWKDDGQVAWLESAGADVYRGTGRLTGPREVTVTAPDGTEHRLTARHAVAVSTGTRAVVPALPGIEEARPWTSREATSAKEAPARLVVVGGGVVGVEMATAWQALGSEVTLLIRGGGLLPKMEPFAGELVADALTEAGATIRTGVSVTAVRRPAPDGPVTVELDDGGRVEADEILFATGRAPRTDDLGLETVGLEPGSWLTVDDSCLVEGTDWLYAVGDVNHRALLTHQGKYQARIAGAAIAARAAKDPVDTAPWGAHAATADHAAVPQVVFTDPEAASVGLTLAEAERAGHRVRAVDYDLASVAGSGLYADGYRGRARMIVDLDREILLGVTFVGPGIGELLHSATVAVAGEVPIARLWHAVPAYPTISEVWLRLLETLRG
>NZ_CP029361.1|WP_030800374.1|432479_432878_+|thioredoxin
MSTVELTKENFDQVVSDNDFVLIDFWASWCGPCRQFAPVYDSASERHPDLVFAKVDTEAQQELAAAFDIRSIPTLMIVRDNVAVFAQPGALPEAALEDVIGQARNLDMDEVRQSVEEQKRAAEAGQSQPEAE

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Crispr_ID: NZ_CP029361_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_2

2329710-2329802

Orphan

Consensus_repeat	Method
TCCTCAAGCGCCGGACGGGCTTGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_2

>merge|NZ_CP029361|2|2329710-2329802|CRISPRCasFinder
TCCTCAAGCGCCGGACGGGCTTGATTTTGCGCGGCCCGGCCGGCCCGCCCGGCGCCGGGAAAAAGATGTCCTCAATCGCCGGACGGGCTTGAT

>NZ_CP029361|2|2|2329710-2329802|CRISPRCasFinder
TCCTCAAGCGCCGGACGGGCTTGAT	TTTGCGCGGCCCGGCCGGCCCGCCCGGCGCCGGGAAAAAGATG
TCCTCAATCGCCGGACGGGCTTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_030810471.1\|2325543_2326209_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP029361.1\|WP_030716865.1\|2333124_2333592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044376054.1\|2328239_2328695_-\|cell-division-protein-DivIVA	unknown	unknown	unknown
NZ_CP029361.1\|WP_030810469.1\|2326826_2327639_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236163
NZ_CP029361.1\|WP_044371282.1\|2333690_2334785_-\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236119
NZ_CP029361.1\|WP_030810444.1\|2337583_2338189_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP029361.1\|WP_030810466.1\|2327646_2328243_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP029361.1\|WP_073774991.1\|2324604_2325294_-\|RNA-polymerase-sigma-factor-SigE	unknown	unknown	gnl\|CDD\|236606
NZ_CP029361.1\|WP_030810441.1\|2338157_2340014_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP029361.1\|WP_044376049.1\|2323537_2324608_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP029361.1\|WP_030810461.1\|2329887_2330673_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP029361.1\|WP_030810446.1\|2336399_2337281_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372582
NZ_CP029361.1\|WP_044376059.1\|2330766_2331846_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237264
NZ_CP029361.1\|WP_003966501.1\|2334895_2335216_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP029361.1\|WP_044371279.1\|2335333_2336329_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029361.1\|WP_003966491.1\|2326342_2326510_-\|DUF3117-domain-containing-protein	unknown	unknown	gnl\|CDD\|371461
NZ_CP029361.1\|WP_044376046.1\|2321462_2323445_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP029361.1\|WP_044376061.1\|2331967_2332834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030810480.1\|2320830_2321331_-\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179287
NZ_CP029361.1\|WP_044376056.1\|2328782_2329655_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_030810471.1\|2325543_2326209_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	7.57847e-46
NZ_CP029361.1\|WP_044371282.1\|2333690_2334785_-\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236119	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed.	0
NZ_CP029361.1\|WP_030810461.1\|2329887_2330673_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.33593e-53
NZ_CP029361.1\|WP_030810469.1\|2326826_2327639_+\|enoyl-CoA-hydratase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	5.33892e-73
NZ_CP029361.1\|WP_030810466.1\|2327646_2328243_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	1.0779e-99
NZ_CP029361.1\|WP_073774991.1\|2324604_2325294_-\|RNA-polymerase-sigma-factor-SigE	gnl\|CDD\|236606	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed.	1.31656e-126
NZ_CP029361.1\|WP_030810441.1\|2338157_2340014_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.12912e-68
NZ_CP029361.1\|WP_044376049.1\|2323537_2324608_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	5.16485e-07
NZ_CP029361.1\|WP_030810446.1\|2336399_2337281_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372582	pfam13369, Transglut_core2, Transglutaminase-like superfamily.	4.07032e-39
NZ_CP029361.1\|WP_044376059.1\|2330766_2331846_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP029361.1\|WP_003966501.1\|2334895_2335216_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	1.44531e-11
NZ_CP029361.1\|WP_044371279.1\|2335333_2336329_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.38315e-10
NZ_CP029361.1\|WP_003966491.1\|2326342_2326510_-\|DUF3117-domain-containing-protein	gnl\|CDD\|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.05791e-23
NZ_CP029361.1\|WP_044376046.1\|2321462_2323445_-\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.08067e-89
NZ_CP029361.1\|WP_030810444.1\|2337583_2338189_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.02127e-32
NZ_CP029361.1\|WP_030810480.1\|2320830_2321331_-\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|179287	PRK01371, PRK01371, Sec-independent protein translocase protein TatB.	3.47423e-52
NZ_CP029361.1\|WP_044376056.1\|2328782_2329655_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.76982e-91

>NZ_CP029361.1|WP_044376056.1|2328782_2329655_+|dihydropteroate-synthase
MRSGALRLGRREFGPHEPVIMAIVNRTPDSFYDQGATFRDEPALARVEQAVAEGAAIIDIGGVKAGPGEEVTAEEEARRTVGFVAEVRRRHPDVVISVDTWRHDVGAAVCEAGADVLNDAWGGVDPKLAEVAARYGAGLVCTHAGGAEPRTRPHRIAYDDVMADILRVTVGLAERAVELGVRPDGIMIDPGHDFGKNTRHSLEATRRLEEMAGTGWPVLVSLSNKDFVGETLDRPVKERVIGTLATTAVSAWLGARVYRVHEVAETRQVLDMVASIAGHRPPAVARRGLA
>NZ_CP029361.1|WP_044376054.1|2328239_2328695_-|cell-division-protein-DivIVA
MARSEPDEVSAPGEMRVFWFLLLTMVVVVTAVTLAVVGGGGSAVLQDVPPERFTDPLPAARPVGRADVEALRLPMALRGYRMVDVDEALSRLGAELAERDARIAELESTLAGDRAAAVTTGADLFKQPGDRPAAEPADRADGADGTEEDGR
>NZ_CP029361.1|WP_030810466.1|2327646_2328243_-|DNA-3-methyladenine-glycosylase-I
MSGGAVAAPDGKPRCPWGLSTEDYLAYHDTEWGRPVHGDDALFERLCLEAFQSGLSWLTILRRRETFRTAFEGFRIEAVAKFTGTDRERLLADPGIIRNKAKVDATLANAKVLAGWPAGELDELIWSYAPDPAGRPAPRTLSDVPAVTPESTALAKELKKRSIRFVGPTTAYALMQACGLVDDHLADCVARGGGSASS
>NZ_CP029361.1|WP_030810469.1|2326826_2327639_+|enoyl-CoA-hydratase
MADEQANTVLYDVSEGLATITLNRPDAMNALSTAAKVALRDALLEASADPEVRAVLLTATGRAFCVGQDLKEHIATLAATRDAGGGNALSTVREHYNPIVRAITEMAKPVVAGVNGVAAGAGFGFALAADYRVVADTASFNTSFAGVALTADSGVSWTLPRLIGQSRAADLLLFPRSISAQDALELGIVNRVVPADELPEQAAAVARTLAAGPTVAYAALKESMAYGAGHTLAETLEKEDELQTRAGASQDHTIAVEAFLAKEKPVYLGK
>NZ_CP029361.1|WP_003966491.1|2326342_2326510_-|DUF3117-domain-containing-protein
MAAMKPRTGDGPLEVTKEGRGIVMRVPLEGGGRLVVELTPDEADALGDALKKVVG
>NZ_CP029361.1|WP_030810471.1|2325543_2326209_+|O-methyltransferase
MRQLRGQERVITANRQTSWAFADAFVAEDEALHVARERARELGLRPVSPGTGAALRLLAAAADAKAVAEIGTGTGVSGIYLLHGMRPDGVLTTVDPEPERQQFAREAFRAAGFATNRARFIPGRALDVLPRLADGGYDLVFCDGDRLESLDVLAESLRLLRPGGLVCFEGVFADGRTVDSAAQPAEVLRLRELLRAARESQELMSTLLPVGDGLLCAVRRG
>NZ_CP029361.1|WP_073774991.1|2324604_2325294_-|RNA-polymerase-sigma-factor-SigE
MLRRLLRSAGEPKSVTNIADRSSEDSAPTATFASDADSQAWTPPSWEEIVSTHSGRVYRLAYRLTGNQHDAEDLTQEVFVRVFRSLSTYTPGTFEGWLHRITTNLFLDMVRRKQRIRFDSLGDDAAERLPSREPSPQQIFNDTHFDADVQQALDTLAPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRSHLRKALKHRSPEARAEQRSLADAVLAGEGGLA
>NZ_CP029361.1|WP_044376049.1|2323537_2324608_-|zf-HC2-domain-containing-protein
MSGTGPTGPTPAEAHLGDRLAALVDGELKHDARERVLAHLATCAKCKAEADAQRRLKSAFAMSASPSPSEGFLARLQGLPGGPGGDGTGSGGPFGGRGPFADEFFPGLRPSGADTRADTAPSPLDGFGYLPATHGSPAVLRGGAASGSAFRIHEVGREADRSPWRGRRFAFAAASAVSLAAIALGGTLPLDSGPESSLRAEGAGNNVTPLDAETRAENGATAVSRRGGGALAVTGDGRAAEQPGTGSAGTGTKAVPPSLTGTTPVVPVVTPPVNRQGPPTAPPLFGASASGGHPFMLPVLNVSVPPLIRPAASGTPLLAAALGSGAVPKTVPSSLPSEPPPGSPANDLASPLSPRP
>NZ_CP029361.1|WP_044376046.1|2321462_2323445_-|PDZ-domain-containing-protein
MDDGKPTGPQAKWWSRPTARRADHPEPVGGPAPTGAPEPEGPARASAVPDQAPTPAPSSPAPVAPDSASASAAAAEVRESAPAAPDQAPPAPVPAAQDQAPAPAARGQVSAPGSPSAAADEPGGQEIPRPRPSGQPLHEPDEYSTPPYGGPGPWAPAPPVQRPTPAHGTVVPPGAGGPTPQYPATNGAGIPAPAPHPAPTDGHTPPHAQPAGGFAAPQPGPTDAFPPPHPAPIDTYAPPPQAHANAQQPAHSAPGQQHQQTQWLQYDPWGAPGQPFTRPGPPEGAEPGRKKKRRGGAFVGVLLLALVASGIGGGVGAYIERNGGLTTVELPQAGRDNGDRAPDSVAGIAASALPSVVTLHVSGTAESGTGTGFVLDGQGHILTNNHVVAPAGSSGDITVTFSTGETASAELVGKDSGYDLAVVRVRGVSGLKPLPLGNSDNVRVGDPVVAIGAPFDLSNTVTSGIISAKQRPITAGGEKGDGSDISYVDALQTDAPINPGNSGGPLVDSKAHVIGINSAIRAADSGGGPESGGQSGSIGLGFAIPINQGKRVAEELISTGKATHPVIGVTLDMKYTGDGAKVGTKDADGGPAVAKDGPADKAGIKSGDVITQVEGQRVHSGEELIVKIRAHRPGDDLDLKLTRGGEERTVTLKLGSASGT
>NZ_CP029361.1|WP_030810480.1|2320830_2321331_-|Sec-independent-protein-translocase-subunit-TatB
MFNDIGALELLTLGVLAVLVFGPDKLPKLIQDVTRTIRKIREFSDSAKEDIRTELGPQFKDFEFEDLNPKTFVRKQLMDGNDDLGLKEIRESFDLRKDLADVTDAVNGRTPAASDTANSAANGSAGASAGAPSTSLTKTGDTAPDLLKKAPSPAQPERPPFDSDAT
>NZ_CP029361.1|WP_030810461.1|2329887_2330673_-|TIGR00730-family-Rossman-fold-protein
MGNAEDARIPEGAEVPEGAVSPGEQWLGPVLRRREQVQPGTTDQRLLDSEGDSEWVHTDPWRVMRIQSEFVEGFGALAELPSAISVFGSARTPAGSPEYEAGVAIGKALVDAGFAVITGGGPGAMEAANKGARESKGVSVGLGIELPFESGLNPHVDIGVNFRYFFVRKTMFVKYAQGFVVLPGGLGTLDELFEALTLVQTGKVTRFPIVLFGTAYWGGLIDWLRDTVVAQGKASEKDLLLFHVTDDVEEAVMLVTKEVGR
>NZ_CP029361.1|WP_044376059.1|2330766_2331846_-|succinyl-diaminopimelate-desuccinylase
MADSTLDLTLDGPALTARLVDFPSVSGEEKALADAIESALRALPHLTVDRYGNNVVARTNLGRAERVVLAGHIDTVPIADNVPSRLDADGILWGCGTSDMKSGVAVQLRIAATVPAPNRDLTFIFYDNEEVAAHLNGLGHIADAHPEWLAGDFAVLLEPSDGEVEGGCQGTLRVHLRTAGERAHSARSWMGSNAVHAAAPILAALAAYEPRRPVIDGLEYHEGLNAVGIEGGVATNVIPDACTVVVNYRYAPDRTEEEAVAHVREVFADCGVAEIVIDDHSGAAMPGLSHPAAQAFMTAVGGTARPKFGWTDVSRFGGLGVPAVNYGPGDPMYAHKRDEHVAVDKITHCEERLRSWLTD
>NZ_CP029361.1|WP_044376061.1|2331967_2332834_+|hypothetical-protein
MLAALGGYLAVQYDSSGSKNPPRCVVEAKDGDEGETQRYEMSLAQAVNAATISAVGTTRGMPERAVTIALATALQESTLRNIDYGDRDSLGLFQQRPSQGWGKPAQLMDPVYSAGEFYDHLAEVPGYSRLPLTVAAQRVQRSGFPQAYAKHEPDAALLAAALTGRRPASLNCTPSTATAEGPGDAGQVRAELVRAFGKDVLPTAKAAGASAASTVSVPVPATSARAEDKASPRRGWELAHWAVAQSEALRIERVSYADRVWDAGTGWRTEDAKGEETGTTAVRIQVVQ
>NZ_CP029361.1|WP_030716865.1|2333124_2333592_+|hypothetical-protein
MSLPLTRRIARAALLIAAGATPVVGAAGAASAADLPAAPELGGLTALDGANVGNTLDSTAQQGTQAAGETGGRLVGTALPAAGETVGKSAKVAVPAAQETAGQAAGNAGEAVGGVADAAGGGLPTDGLGGGLPTDSLGKGGLPTDALPLNGLPIG
>NZ_CP029361.1|WP_044371282.1|2333690_2334785_-|succinyldiaminopimelate-transaminase
MSAVSSRLPVFPWDKLAPYKSTAQAHPDGIVDLSVGTPVDPVPELIQRALVAAADSPGYPTVWGTEALRDALTGWVERRLGAAGVTHANVLPVVGSKELVAWLPTQLGLGTGDRVAYPRLAYPTYEVGARLCGAEPVVYDDPTELDPAGLKLLWLNSPSNPTGKVLSKDELTRIVAWAREHGVLVFSDECYLELGWDAEPVSVLHPDVCGGHYDGIVAVHSLSKRSNLAGYRAAFIAGDAAVLGELLLIRKHGGMMTAAPVQAATVAALGDDVHVSEQRARYADRRLALRAALEAHGFRIEHSEASLYLWASRDEPCWDTVAYLAERGILVAPGDFYGPAGASFVRVAFTATDERVAAAVKRLS
>NZ_CP029361.1|WP_003966501.1|2334895_2335216_-|ferredoxin-family-protein
MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDTPEEWKDYYKANVEFFDDLGSPGGASKLGLIERDHAFVAGLPPQNQ
>NZ_CP029361.1|WP_044371279.1|2335333_2336329_+|GNAT-family-N-acetyltransferase
MEFTIGGRLEVRITPADVGKRVSVRRRTDSGGTGAEFTDVVGVLTSWNDGVVSITRKSGESVHIVESSLVAGKVVPAAPARRRGPAASFEELAAVTARAWQPVESEALGDWRLRAAGGFTRRANSVLPLGDPGLPLGEAFGRVRRWYEERGLPAYVQTATGAEGTQELLCAELEEHGWRCEVSAEVRIASLTPVGDREAEVSAVRLTREPDAAWLARYQRFSTPGPHVLRVLGSGPSVWFATVPGSGDAPDAIGRCVVDGRWAGFMAVEVAPEQRRRGLATTVMTALARRALDEGASAAWLQVEEDNEGARALYDGMGFAGHHRYHHYRSA
>NZ_CP029361.1|WP_030810446.1|2336399_2337281_+|tetratricopeptide-repeat-protein
MSGLDSGAAERRRQFAEEARSERPDLALLCLLLGAEAGPVGPAEVVPVTPGEPVPDPYGIDAAQIELDRLAGLLPYGSRSPAGWASALAELLGERCGFGGSSADYQRLDSSLLQQVLRRRRGLPILLSVVWIEVARRAGAPVYGVALPGHFVVGFGDREHPVLADPFAGGAPLTGQDAELLVTGATGAALEPSMMVPARPLEIVLRILNNIRAWAAARPERTDVALWAVELSLLLPSHPARLRYEHAQLLVQRGEFLRGAAEMEEYAAILAEIEPTTAENIRRKAHAARALLN
>NZ_CP029361.1|WP_030810444.1|2337583_2338189_+|response-regulator-transcription-factor
MTTVLLVHTVPLWRASLASLLGTGQGIEVRTAERGAIRAALSGGCPDVLLTDLDCPGARDVLDEVRTVTAPHGGTYPLAVLTRSDQPRGLRRAYEAGALGYIDKYRPVDDLSEVMHKLADGGRHIDESLAFSLLQVADMPLSPRELSVLSMAEEGDNVAGIAARLHLTPGTVRNYLAAAIRKSGARNRLDAIRRAKEAGWI
>NZ_CP029361.1|WP_030810441.1|2338157_2340014_-|ABC-transporter-ATP-binding-protein
MKPGHDPAHPPRDTALRRVAREARPFLRARTGAILRLSGWSLLEFAQTFLSGYGVARALDDGFLAGRPATGLLWLAVAAVAVLPSVLAARGVFGRLADLVEPLRDGLVRRAVARALSGALGRSGDVSTRSLSQVTHQSEIARDGWAGLVLTLRSFVFTAAGAVTGLLALSPALLLIVLPPLVLGAALFLGTLPPMAARQRAYLAADEAYAAHAGELAASVRDIAAAGTAGRTVAESRALADAQLAASRSLARWSAVRVVALAVCGRFPPLLLLLGAPWLLRNGLTPGGLVGALTYLTQALAPAVQALMTMLGTAGGRLVVVLDRFTDAPPPPADEPAREAAPPASRSAAREATPVAELHEVTFAYGPRAHPVLDRLSLAVGAGEHLAVVGPSGSGKSTLAAVLAGTERPTGGAVRWRGRPARPADATSVRVLLPQHAYVFSGSLRDNLRYLRPDARDREIAAMADAVGLEALLSRLGSLDTAVEPDRLSQGERQLVALGRAYLAAPPLLILDEATSRLDPAAETRAELAFATLPGALVVVAHRLSSARRADRTLVMDGPRTRCGTPAELLRSSALYRDLSGLWEPEEADTVPEPEAPEEAPRRGEERAIRSTPPPSPV

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Crispr_ID: NZ_CP029361_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_3

2963768-2963862

Orphan

Consensus_repeat	Method
AAGGGTTCCGTCCTCAATCGCCGGACGGGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_3

>merge|NZ_CP029361|3|2963768-2963862|CRISPRCasFinder
AAGGGTTCCGTCCTCAATCGCCGGACGGGCTGGAATCACGCAGCCTCGCCGCCCTCCCGAGGAAGGGTTCCGTCCTCAAACGCCGGACGGGCTGG

>NZ_CP029361|3|3|2963768-2963862|CRISPRCasFinder
AAGGGTTCCGTCCTCAATCGCCGGACGGGCTGG	AATCACGCAGCCTCGCCGCCCTCCCGAGG
AAGGGTTCCGTCCTCAAACGCCGGACGGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_044376646.1\|2958248_2959817_-\|fatty-acid--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|236072
NZ_CP029361.1\|WP_006126763.1\|2967725_2968373_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029361.1\|WP_044376642.1\|2957336_2957615_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044370592.1\|2972264_2972951_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP029361.1\|WP_044370584.1\|2968483_2968969_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP029361.1\|WP_044370682.1\|2971518_2971899_-\|twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|350299
NZ_CP029361.1\|WP_044370684.1\|2971915_2972194_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP029361.1\|WP_044376644.1\|2957611_2958010_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|350222
NZ_CP029361.1\|WP_030799108.1\|2962332_2962869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044376649.1\|2959916_2961065_+\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181147
NZ_CP029361.1\|WP_044370588.1\|2968965_2970171_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP029361.1\|WP_158100817.1\|2958037_2958211_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044376651.1\|2961539_2962316_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP029361.1\|WP_044370580.1\|2966544_2967354_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP029361.1\|WP_044376654.1\|2963066_2963753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP029361.1\|WP_032793397.1\|2963920_2966332_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029361.1\|WP_044370590.1\|2970333_2971506_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180434
NZ_CP029361.1\|WP_167393094.1\|2957011_2957173_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044370594.1\|2973030_2973939_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|179418
NZ_CP029361.1\|WP_030799104.1\|2961080_2961536_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224462

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_006126763.1\|2967725_2968373_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.86316e-09
NZ_CP029361.1\|WP_044370592.1\|2972264_2972951_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	1.05812e-56
NZ_CP029361.1\|WP_044370584.1\|2968483_2968969_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	1.08435e-17
NZ_CP029361.1\|WP_044370682.1\|2971518_2971899_-\|twitching-motility-protein-PilT	gnl\|CDD\|350299	cd18732, PIN_MtVapC4-C5_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 toxin of the VapBC toxin/antitoxin (TA) system. This family belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. M. tuberculosis VapC4 interacts with, and cleaves tRNA44Cys-GCA. M. tuberculosis VapC5 has endonucleolytic activity with RNA, this activity is low with dsRNA, and no activity has been demonstrated on dsDNA. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.37612e-40
NZ_CP029361.1\|WP_044370684.1\|2971915_2972194_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.10243e-06
NZ_CP029361.1\|WP_044376644.1\|2957611_2958010_+\|DNA-binding-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.73614e-06
NZ_CP029361.1\|WP_044370590.1\|2970333_2971506_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180434	PRK06158, PRK06158, thiolase; Provisional.	6.32946e-132
NZ_CP029361.1\|WP_044376649.1\|2959916_2961065_+\|lipid-transfer-protein	gnl\|CDD\|181147	PRK07855, PRK07855, lipid-transfer protein; Provisional.	0
NZ_CP029361.1\|WP_044370588.1\|2968965_2970171_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.27818e-38
NZ_CP029361.1\|WP_044376646.1\|2958248_2959817_-\|fatty-acid--CoA-ligase-family-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP029361.1\|WP_044376651.1\|2961539_2962316_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	7.42184e-36
NZ_CP029361.1\|WP_044370580.1\|2966544_2967354_-\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	2.34867e-26
NZ_CP029361.1\|WP_044376654.1\|2963066_2963753_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.00521305
NZ_CP029361.1\|WP_032793397.1\|2963920_2966332_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.81371e-74
NZ_CP029361.1\|WP_044370594.1\|2973030_2973939_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|179418	PRK02391, PRK02391, heat shock protein HtpX; Provisional.	7.3786e-174
NZ_CP029361.1\|WP_030799104.1\|2961080_2961536_+\|hypothetical-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	7.25749e-20

>NZ_CP029361.1|WP_044376654.1|2963066_2963753_+|hypothetical-protein
MIRNILGSVVALAGAASAVLSPFRDWYGGRAGHDYRVRDLFEGITPVESGVLVSILLPFLAAALLVVLGVVLRSRLVVALAGLVVLGFTILWMVRQGQAAGSLVVGGDGAGLQVGVVNALAGGVLMLIGALLMSGRRSRRERRVVREREPVEPFAVPAADQVDTWPPTQEPGMSVQTSPWPEPEVEPYTGPDPRDARTRSYPQAAPHPEDDPRDPVHPPHRPPPPPQG
>NZ_CP029361.1|WP_030799108.1|2962332_2962869_-|hypothetical-protein
MMRRQMKLAAVLVVVVLALTGFSTSSSGGKGRSGKSSSSDGGGCSSSKKSNNGYRDTDYDDDDYGDSSSSSGSSGASPTPTPTASDEALDIRVIRCAAPRKGKRKAVTSSLIEVQANDRYTQDYEIDVRFVDARGNTVDTAEATTTLDSGDFTTLTVRMDSPGKVSRVDRCEVTAKVV
>NZ_CP029361.1|WP_044376651.1|2961539_2962316_+|enoyl-CoA-hydratase/isomerase-family-protein
MALRIEREAAAGVVLVTLDRPAKLNAIDLETAAELASLWQELRYDESIRAAVLTGAGTRAFCTGIDRGIEVPQPSSPYAVDDPLLRIGPKANDLWKPVIAAVEGMACGGAFYLLGEAEFVVASREATFFDPHTTYGMVSAYEAIAMAQRMPYGEVARMSLMGTAERVSAERAYAVGLVSEVTEPGGTVAAALRSAAVIAGYPTDAVQGTVRAVWSAKEAARTQAMAQAPALIALGNLPPDRQAELFGARGGGGEPRVR
>NZ_CP029361.1|WP_030799104.1|2961080_2961536_+|hypothetical-protein
MSDADSLLLPVVDEDGAPFWEYTARGELRVQACASPACGELRFPPRPCCPHCGSFTSEWRLMSGRGRLWSYVIPHPPLLPAYAEQAPYNAVLVELADAPQIRLAGNVVASPDAPLNSVDPARLRIGAPVRAAFCPAGPSGSVTLVRWLLER
>NZ_CP029361.1|WP_044376649.1|2959916_2961065_+|lipid-transfer-protein
MATLKDATAIAGIGQTAFAKRLPESEKTLACRAILAALDDAGIAPSEVDGFASYTMEETDEVEVAKAVGAGDVTFFSKVGYGGGGSCATLGHLAAAIATGQASVGVAWRSRKRGSGPRPWKNTTVQLPTPAQWTRPYGLLRPADEIGMLARRYMHEYGATRDHLFNVALACRNRANQNPDAIMYDRPLTREMYMTSRWISEPLCLFDNCLETDGALACVIVSAERARDCRQKPVYLHSVAQGLPAQHHGMVNYWNDDPLTGPAWAAARQLWKQADFGPDDVHVAQIYDAFTPLVPLSLEGYGFCARGEGGAFTEGGALESGGRLPVNTGGGGLSEAYVHGFNLITEGVKQLRGTSTAQVPDAATCLVTAGEGVPTSAVLLRS
>NZ_CP029361.1|WP_044376646.1|2958248_2959817_-|fatty-acid--CoA-ligase-family-protein
MRGDEEWGSIPGLVRAAAERYGPAEAVADGRTRLSYAELGDRVERAAAACMAAGVEPGDRVAIWAPNTTEWIVAALGAVSAGAVLVPLNTRFKGTEAAYILRRSRARLLFVTGTFLGTSYVASLRRAEVKLPDLERVVVLADTAPEDYTGWPDFLAAGEGVEPSAVRDRGAAIAPSSPSDIIYTSGTTGAPKGAVITHAQTLRAYEIWSDLAGLREGDRYLIVNPFFHTFGYKAGIIACLMRGATMVPQPVFNVDTVLANIAAERISVLPGPPTLHQSLLDHPAREAHDLSALRLVVTGAAVVPLQLVERLRNELHIATVLTAYGLSEASGIVTMCRRGDAPETVATTSGRAIPGTEIRVLADPGAPGEVQVRGFTVMSGYFEDPDTTAATMTEDGWLRTGDVGVLDAAGNLRITDRIKDMFIVGGFNAYPAEIEQLLGLHPDVADVAVIGVPDPRLGEVGKAYAVRRRGATLTADDLIAWSRREMANFKVPRTVEFVPELPRNASGKVVKGELRGSPDGRK
>NZ_CP029361.1|WP_158100817.1|2958037_2958211_-|hypothetical-protein
MPTKKYTVTLPEKPAEETLAEVGPGGLSAYATRVVERRREQDRPGELVAPVGGPGRE
>NZ_CP029361.1|WP_044376644.1|2957611_2958010_+|DNA-binding-protein
MSGALVLDSEGLAQAVRRNREVQEWLEAARDADIPVITSAVVLVEVIHPRIDSAALSWTLSRLRVEPVSQILAHTAASLLRNAGLHGHEYAIDALLCATALAHPGRVTILTSDVEDIGLLTADHPRVTAEKI
>NZ_CP029361.1|WP_044376642.1|2957336_2957615_+|hypothetical-protein
MAEAPDFPPGDGPSSGISVSLTAGTLHAIRERVGKRGVSAYLEMAAQRQIERDGLNELLADFEATNGPPDPGAVADKRAKLTSNPSEAGAAG
>NZ_CP029361.1|WP_167393094.1|2957011_2957173_+|hypothetical-protein
MSDINKPTIKPKPLDDHMSGGDKGVVRPQDDHMSGADKNIAKPQDDHMSGEQP
>NZ_CP029361.1|WP_032793397.1|2963920_2966332_-|serine/threonine-protein-kinase
MEQLTQHDPRRIGPFEVLGRLGAGGMGLVYLARSASGRRVAIKTVRTELAEDQLFRVRFTREVEAARAVSGFYTAAVVDADPRAAVPWLATAYVPAPSLEEIVNECGPMPTQAVRWLAAGIAEALQSIHGAGLVHRDMKPSNVLVVEDGPRVIDFGIASGVSNTRLTMTNVAVGTPAYMSPEQARDSRSVTGASDIFSLGSTLVFAATGHAPFHGANPVETVFMLLREGPDLEGLPDDLRPLIESCMQMDATQRPSPADLQAQLAPHLFASGGDDSGTASAWLPSRATAMIEARRGGGRTAPPAAPVSPPPPPRQPPRAPERDTAWRSGADLRSPSPLASPSPMSGGPAPSAGPSAAPDSGPVRLPGAKVPIGPGPRAGDGRGAAAAHPAPATGWVRPPAGVNGSPATAAVPPPGPAPDAAAPAPDRWRPWRFRMSNDVWGTPVVSGDLLYVTSFEVHALDVGNGRRQFKTRDVAWAMAVEGGRIHASDGPSLYALDATTGAEQWRLSTDAWVYALKADRGTVLTATRGGGVQGWEASSGEKLWEVTGAQSDFETAEAGPVIHDGTVYVWQDARLRALDARTGLERWSYPIGDAASCGGVPVRVTPATDGYVYIAAGTRVLAVETGSGRVRWHFEAPAVFLSPPAFAPGPAVTGGGVYLADYLGTVYALDATTGKDRWRIATEARSSIEPVLVAVGNVHVGSGSALYTLDAVTGTPKWRFAAGGDVVGAPVVADGRVHFGSADHVLYTLDAAGGQLRWKLATGGEITGSPVAQGGVVYACSKDRCVYALDALKGTGTGNRART
>NZ_CP029361.1|WP_044370580.1|2966544_2967354_-|VOC-family-protein
MAAFAHSAPCWADVQLSDLEAGKRFYGGLFGWTFRAGDGMPVADALSDGRLVAALAAKKDGRMPTAWGVYFSTDDIRATVASIREHGGQIITDPVRAGAAGIVAEAADPGGAVFGLWQPEERAGFEKQNDPGSFCWTEVYTRQPDRVDPFYEKVFGFHGTDLDETGHDVSDDAEALVDFRMWSPEGVEPGPDTAVGGRSVITDAFPAEMPSYFLIYFAVADCDAAAELAVQLGGRVAQPPFDIPYGRMAVLHDDQGAAFAVLQPGELLP
>NZ_CP029361.1|WP_006126763.1|2967725_2968373_+|TetR/AcrR-family-transcriptional-regulator
MTGQVRTVDGRVAGRRGQATRQKLLDCLSEMLSSSPYRDVKVIDVARKAGTSPATFYQYFPDVEGAVLEIAEEVAKEGAGLTELVAGRSWVGKAGWTTSEQLVEGFLDFWRHNDAILRVIDLGAAEGDKRFYKIRMKILNSVTNSLTDSVKELQSKGKVDKDVSPAAMAGSLVAMLAAVASHQKGFTTWGVKQAELRPNLALLVHLGITGKKPTK
>NZ_CP029361.1|WP_044370584.1|2968483_2968969_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MTGARGARLVQRVSSTRAFALFAPYVVPVLDRAVHRLTRGRVLLSARMLPGLVLTVPGARTGRPRTTPLACMPEGEVEGSWILVGSNFGRPGHPAWTANLLARGGEAVVNWRGRDIPVRATLLEGEERARVWEAALAFWPPYAAYQRRVERQIRLFRLERR
>NZ_CP029361.1|WP_044370588.1|2968965_2970171_-|acyl-CoA/acyl-ACP-dehydrogenase
MDTALTAEQHEIRRTLRDLLARHTGPDAIPAAVGTAEGYDPALWRRLAGDLGLPGLALGEEYGGAGCTATELALACEETGRALLPSPLLATAALAAPLIAALGTPDQRAALLPRIADGTLTAALALPGGSLATALGLTGDNLDGTWAGGGRAGGVQAHGEAGERRLYGEADRVLDGHSAGLLLVAAHAGGYPRSRTQLFLVPGDAPHLVRTRLTALDETRPLARVELRDTPAELLGPDDTADAAAALADAGRTAAAILAAEAVGTAASALERTVEYVKTREQFGRAVGSFQAVKHRLADLYVRVEAARSAAYHAAREPEAGPLALAQALEAARVTTGEAVQLHGGIGFTWEHEAHRYLKRAAGDELLFGPVHRLRDHAAHRAGLFGPATAASGVLHGAGVR
>NZ_CP029361.1|WP_044370590.1|2970333_2971506_+|acetyl-CoA-acetyltransferase
MSASRPRRVAVVGVALADCGRVDDATPYALHAQAARRALADSGLDRSVVDGFASAGLGTLAPVEVAEYLGLRPTWVDSTAVGGATWEVMAAHAADAIAAGRARAVLLVYGSTARADIRAGRRTSNLSFGARGPAQFEVSYGHSLIAKYAMAARRHMHAYGTTLEQLAEVAVTARANAAANPEAMFREPITVEDVLSGPMIADPFTKLHCCIRSDGGCAVLLAAEEYVPDTAKAPVWILGTGEHTSHATMSEWEDFTVSPAAVSGRLAFERAGVRPADIDLAEIYDAFTYMTLVTLEDLGFCAKGEGGAFVEKGRTGLRGELPVNTDGGGLSACHPGMRGLFLLVEAVRQLRGEAGLRQVIRAGGGLPELAVASGTGGWFCSSGTVVLGRG
>NZ_CP029361.1|WP_044370682.1|2971518_2971899_-|twitching-motility-protein-PilT
MLDTCTYIDLDLLEPERLPMLPALTAISLAELQHGVAMAKDPLVRAARMEKLGAAVADFEPLPFDGDAAARYGTLVALVLAARRDPRPRRMDLMIASIASVRGLPLFTRNADDFKGLESAVTVVGL
>NZ_CP029361.1|WP_044370684.1|2971915_2972194_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKTITQREFRNNSAEVMDAVESGETFHITRNGTEVAELRPLSRKRQLSAEELVARHRRLPRVDGDLLRREADEFFGAEDRVGDDDVWERNGG
>NZ_CP029361.1|WP_044370592.1|2972264_2972951_+|pyridoxamine-5'-phosphate-oxidase
MTDDTAQRSFRDLLHAQRVWDTELPAFDPETAPPAPLTLFHAWFAEAVAAGQPEPHAMALATADAEGLPDVRTLLLHDADERGLHFASHATSAKGHQLAARPHAALGFYWPAQGRQVRVRGPVVRCTPAESHADLHARSTGALAAALTGTQSEVVGSVAELHRTADAARDRAMAEPDAEAPTWTRYVVEPTEVEFFQGDARRRHIRLRYRRAEGGGTDGDWTRELLWP
>NZ_CP029361.1|WP_044370594.1|2973030_2973939_+|zinc-metalloprotease-HtpX
MPRARSRYAPDRGLTGRMVTTMFLIGLLYVVFVGVLLAALRGSWPIILIITGGMFIAQFWFSDRIAAYGMGAREVTPEQAPELHGTIDRICALADMPKPKVAIAESDVPNAFATGRSEKTALVCATTGLLRRLEPEELEGVLAHEMSHVAHRDVAVMTIASFLGVLAGIITRIALWGGFARSRPGNDPAGILLLLIPLISAVVYAISFLLTRLLSRYRELSADRAAALLTGRPSALASALTKVSGQMARIPTEDLRKAEPYNAFYFMPAFSAKESLGRLFSSHPTLEQRLDQLSRISTELSR

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Crispr_ID: NZ_CP029361_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_4

3184736-3184898

Orphan

Consensus_repeat	Method
CGTACGGCGGGCCTCCGCC	CRT

3 spacers

The CRISPR arrays of NZ_CP029361_4

>merge|NZ_CP029361|4|3184736-3184898|CRT
GGTACGGCGGGCCTCCGCCTGAAGCAGGTCCGGCCCCGCGCAGCCGTACGGCGGGCCTCCGCCCGAAGCGAGGCCGCCCCGGGGTCCGGCCCCGCGCACGCGTACGGCGGGCCCCCACCCGAAGCTGGTCCGGCCCCGCGCGAACGTACGGCGGGCCTCCGCC

>NZ_CP029361|4|1|3184736-3184898|CRT
GGTACGGCGGGCCTCCGCC	TGAAGCAGGTCCGGCCCCGCGCAGC
CGTACGGCGGGCCTCCGCC	CGAAGCGAGGCCGCCCCGGGGTCCGGCCCCGCGCACG
CGTACGGCGGGCCCCCACC	CGAAGCTGGTCCGGCCCCGCGCGAA
CGTACGGCGGGCCTCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_063837837.1\|3198186_3198816_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044375544.1\|3184958_3187784_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|227785
NZ_CP029361.1\|WP_044375556.1\|3177474_3178086_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP029361.1\|WP_030815409.1\|3190432_3191347_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP029361.1\|WP_030815411.1\|3189455_3190436_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP029361.1\|WP_044375559.1\|3176841_3177462_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224996
NZ_CP029361.1\|WP_030815418.1\|3183118_3183472_+\|PRC-barrel-domain-containing-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044375549.1\|3180530_3182942_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP029361.1\|WP_044375554.1\|3178316_3180119_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP029361.1\|WP_030815403.1\|3193399_3193972_+\|DUF417-family-protein	unknown	unknown	gnl\|CDD\|225601
NZ_CP029361.1\|WP_030815388.1\|3196994_3197438_-\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP029361.1\|WP_044375563.1\|3174074_3175055_+\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP029361.1\|WP_044375541.1\|3188019_3189324_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP029361.1\|WP_044376680.1\|3194502_3194730_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044376678.1\|3194077_3194503_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044375561.1\|3175100_3176654_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|181971
NZ_CP029361.1\|WP_044375552.1\|3180115_3180565_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_CP029361.1\|WP_044376682.1\|3194726_3195209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_006126530.1\|3172592_3172964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030815439.1\|3173092_3174010_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_044375544.1\|3184958_3187784_-\|glycoside-hydrolase	gnl\|CDD\|227785	COG5498, ACF2, Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane].	1.56515e-79
NZ_CP029361.1\|WP_044375556.1\|3177474_3178086_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.45535e-24
NZ_CP029361.1\|WP_030815409.1\|3190432_3191347_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.87467e-85
NZ_CP029361.1\|WP_030815411.1\|3189455_3190436_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.49019e-82
NZ_CP029361.1\|WP_044375559.1\|3176841_3177462_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	8.90296e-20
NZ_CP029361.1\|WP_044375549.1\|3180530_3182942_-\|GAF-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	0
NZ_CP029361.1\|WP_044375554.1\|3178316_3180119_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.61435e-40
NZ_CP029361.1\|WP_030815403.1\|3193399_3193972_+\|DUF417-family-protein	gnl\|CDD\|225601	COG3059, COG3059, Predicted membrane protein [Function unknown].	9.74449e-07
NZ_CP029361.1\|WP_044375563.1\|3174074_3175055_+\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	3.16315e-158
NZ_CP029361.1\|WP_044375541.1\|3188019_3189324_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.5459e-33
NZ_CP029361.1\|WP_030815388.1\|3196994_3197438_-\|SnoaL-like-domain-containing-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	5.21094e-08
NZ_CP029361.1\|WP_044375561.1\|3175100_3176654_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|181971	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed.	6.20274e-116
NZ_CP029361.1\|WP_044375552.1\|3180115_3180565_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.06579e-35
NZ_CP029361.1\|WP_030815439.1\|3173092_3174010_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.25767e-66

>NZ_CP029361.1|WP_030815418.1|3183118_3183472_+|PRC-barrel-domain-containing-protein
MSDSLWGYQPSSGHTAGVDLTGYSVEATDGSIGKVDKYSDEVGSAYLLVDIGVWIFGKDVLLPAGTVKRIDTEDRKVYVDLTKEQVKDSPEFDRHQQTEDPAYHEQLSAYYTAYRIL
>NZ_CP029361.1|WP_044375549.1|3180530_3182942_-|GAF-domain-containing-protein
MPDDVQGWLTPRAVAAEAGVSQEFDLSQCVREPIHLLGGVQSYGALIAARWDDAAVDTVSENAAEVLGRAAGELLGRPVTELIGDEQWAQARESAEAVTDSGAAAPQEGPASSGVLPLTLEGEGGPRLFDVTVHRNGDLLVLEFEPRAEGGPFVFQNFYPRVRRALQKLQGATDVTECCAAAVREIRTLTGYDRVVAYRFDGRDGPGQVIAEDRSEGREPWLDLWFPASDIPPQARRLYARNWIRVIGDVADRTAGLVPERRADTGEPLDLSASVLRTVSGYHLEYLRNIGVASSMSVSLLHEGDLWGLIACHGDEPRRLSPEVRAACEFFGIALSLQLAAVAGREEADELARSRRALASVLARLTSGAPDDWMRPGSGLVELLDADGAVLLRGTETLTAGAPLPDALPGLPARLAQDGSVRGVWSSDRLPEVLGLEPEEAEAEGIPAGLLLLPFNRDGDLLAWWRREQPAPREWAADPSRPVRTGPGGERLTPRGSAAVYRATVRGRSAPWSPAQRAVAGELWREVSGLLTRQVVALEARNTELARTNEDLDSFAHAAAHDLKEPLRGISNAAAFIVEDAGTVLDATSLRRLTTVRRLAERMDGLLDSLLHFSRLGQVGLEREALSVDEVLDDALVVAGGRLAEQGVTLVRPAALPRLRADRERLREVLENLLVNAAKYAADEGAGERRVWVEAVRVAAPGRAPEEGGADGGTVTALVVRDNGIGIPPGQQEDVLQLFRRLHRRDERGGGSGVGLAVVKRIVERHGGRLWLESPAVAPDADCGGGPGTAVWFTLEEPPEARP
>NZ_CP029361.1|WP_044375552.1|3180115_3180565_+|response-regulator
MTGGGLILVVEDSEEDTEAIQRALSRSHPFLDLEFAPRSEDVLPRLLDPAARTPDLVLLDLNMPGIGGLALLSSLRAHPACASLTVVVFTSSTASAEEDSCYAAGADSYIYKPVNFELFQTVLRGAVDFWLPRAADGAVTAVPPAAPPA
>NZ_CP029361.1|WP_044375554.1|3178316_3180119_+|SpoIIE-family-protein-phosphatase
MVDDDTWSGALHRLWQAASRAEEVGALADDVYAPLLATPGVHLVVGTRWDEDATLRYMRALGADGDAPVIVATARSMPGAAVREPDGEPVVTRSPVDELDDAVWPEAEFLRQVPGASVVGCTFRLDRSGWAGLSVAMDTSADTEGVARRLAQAVDVIVACHTGILQRGREARRGADDALLAEASLQMDSSLDVEDTLRRVARIAVPAVADGCLVHLLRKDGPEFVAATHVAVQQQRALEEAGRDDPWLAALLAQRDDGDQALFLSGAALDGSPFAGPGPTGGGRHPTVVSVSTLHARGRVVGSITFVYQRPEDRLPDSAFLDSLATRAALAIDNALLYELRRHAVLSLQEHLLPSQLPAAAGWDLSASYEVGDPMLDVGGDFYDAVPRPDGSIALLIGDVCGRGAEAAALTGLARHTLRTLLEEGTDPGTALSRLNRALRQEGASRFLTAVVVTMTPRADGTVLLTTCSAGHPRPLVLRADGSIGEVVSGGLLLGILDDVSYESHEDSLAPGDTLVLFTDGLTESREADGTYFESVLPGRLSALRGSDAAQVAESLARQARAFRASGQDDIALLVARWNGITPSDGLLPLETWLEQAALR
>NZ_CP029361.1|WP_044375556.1|3177474_3178086_-|Uma2-family-endonuclease
MTAAFVENGQASDGRAWDYLLQTWRELDVPEGWRAEIDEGQIVLVPPPHAHHNGIAARVQRKLYTTLPEDLEIYQTLGIHIAPLGKLYVPDLVVMPTELIAAADPETSDPMDASEALLVVEITSRGNAREDRTKKYRAYARAGVPMYLLIDRFDTRGPMVTLFTEPNEDGTYKHTDAVPFGKPLTVPSPFDVQLATEEFPGAS
>NZ_CP029361.1|WP_044375559.1|3176841_3177462_+|NAD(P)-binding-domain-containing-protein
MRIGLLGTGNVARALATGWRAAGHDVLLGSRHPKERTDLGLPVAGLDGTAAHAEVLVNATPGGVSVDLLRSIGAPALAGTLLIDVGVGLSDDFSALTHPNSSLGELIQEAFPLTPVVKTLCTMDSTTMVAPGELTEPGTVFLSGEDPEAKATTGRLLTDLGWPAASQLDIGGITTARGQEHFAFLFMGIAGGVNSHTFNIKVVTRP
>NZ_CP029361.1|WP_044375561.1|3175100_3176654_+|PTS-transporter-subunit-EIIC
MATEDKNRATAAAILPLVGGAANVASIAHCMTRLRLGLHDRSLVDDEALKALPAVMGVVEDDTYQIVLGPGTVARVTPEFEQLVEEGRETAPTPVTVSADDLAAQGAAIKAQQKAKNATPFKLFLRKIANIFVPLIPALIGCGIIAGLNGLLVNLGWLPAVTPALAAMASGFMALIAVFVGYNTAKEFGGTPILGGAVAAIIVFPGVANIDAFGQTLSPGQGGVLGALGAAVLAVYVEKWCRRWVPEALDVLVTPTLTVLISGLVTIFGLMFVAGEISSAIGTFADWLLSNGGAGAGFVLGGLFLPLVMLGLHQALIPIHTTLIEQQGYTVLLPILAMAGAGQVGAAMAVYFRFPRNESIRRTIKSALPAGLLGVGEPLIYGVSLPLGRPFITACVGGAFGGGFVGLFNQLGDTVGSTAIGPSGWALFPLLDGNHGLGSTIAIYAGGLLVGYVAGFVATYFFGFSKDLLTEFNVSQEPTASTIAATGGAAPSTTPPAAGGPDTPDPGTDPAKAPAGV
>NZ_CP029361.1|WP_044375563.1|3174074_3175055_+|N-acetylmuramic-acid-6-phosphate-etherase
MTSTTDANTDTPGATGTPGTYGELRAQLATLTTEAFRPELAEIDRLSTEEIARIMNGEDATVPAAVAARLPQIAAAIDATAERMARGGRLIYAGAGTAGRLGVLDASECPPTFNTDPAEVVGLIAGGPSAMVTAVEGAEDSKELAAADLDALKLTADDTVVGISASGRTPYAIGAVEHARAQGALTIGLSCNADSALAAAAEHGLEVVTGPELLTGSTRLKAGTAQKLVLNMISTVTMIRLGKTYGNLMVDVRASNEKLRARSRHIVSLATGASDAAIEAALAATDGEVKNAILVVLGQVDGPTAARLLTESDGHLRAALAAVRTT
>NZ_CP029361.1|WP_030815439.1|3173092_3174010_+|MurR/RpiR-family-transcriptional-regulator
MTSDVKEIFSSGSPPAPAALAAKVRTLAPSMTRSMQLVAEAVAGDPAGCAALTVTGLAERTGTSEATVVRTARLLGYPGYRDLRLALAGLAAHQESGRAPAVTADIAVDDPIADVVAKLAYDEQQTLADTAAGLDTVQLGAAVAAASTARRIDIYGVGASSLVGQDLAQKLLRIGLIAHAHMDPHLAVTNAVQLRSGDVAIAITHSGSTGDVIEPLRVAFDRGATTIAITGRPDGPVSQYADHVLTTSTARESELRPAAMSSRTSQLLVVDCLFIGVAQRTYETAAPALAASYEALAHRHTPRTR
>NZ_CP029361.1|WP_006126530.1|3172592_3172964_-|hypothetical-protein
MELNALEQSLHTARALVMADLAAADVAEADIVSLVEDAVTHRRWWVEQWPEGAEFVAGLVAQDVQDALLERYGRWPLCPACSPEDEPHALDVEPELGPDPHWVCTKAAVAVAPVGALGEVLRR
>NZ_CP029361.1|WP_044375544.1|3184958_3187784_-|glycoside-hydrolase
MIEVLLVLTSLSGLVSRVTPRPAAATLLAIAVAAVGLGPAASPAAAATIPAGAGSYTDARPAGTQGPTTNTGAPVTPKLTTAARSKPVPTNDWWSSLAFQRYGDNPYSTPMYGHPLTYQAKASGLEVGYPTTPAIVGDGRQYEYAHKADLTVGLSGLNSPDTKADAWSDWTVTPYWADGSRTFRATIGHGMPFVYAKGSGGDARITTASAPTVFSDQGNVLGITVAGHHYALFAPTGSDWNISGSTITAGLGSKDYFSLAVLPSTDALATYRKYAFSFVTGSQVAWQTTGGNVRATYSLTTEAKEGTERGTLQALYRHQWLHTSDALTPYTYVSPRGTMKVRESATFTTSQKNNGVVPALPASSGVDKARLTGYLNEVANASDPFSGATDTYWTGKALGRLAQLVPVADQIGQTATRDKLLGLMKGRLQEWFTAGGASEFSYDKDWKTLTGYPASYGSDTELNDHHFHYSYYVYAAAIIAQYDQAWVADSAWGTMIKHLIRDTANASRTDSAYPFLRGFDVYAGHSWASGHQGFAAGNNQESSSESINLSAALVLFGSATGDNALRDLGSYLLTTESEAITQYWFDASQQVFPASFGHDTVGMVWGSGGAYSTWWTANPEEIHGINVLPVTGGSLHLAREKAAIKRNIAEMERENGGPAQEWRDLLWEFESLSDPASAKAKWDGVNGNYTPEQGESKAHTYHWINTLAAVGAPDMTVSGDIPTSAVFSKNGTRTYTAHNHGSTARTVTFSDGKTLSVPARSTATSTGPGGSDPDPEEPGEPGNGNTFRLKTGGVLTTATTDPAGADTIASADGVNRDGTPYRPTVYEVKKVNGKVTAGAATAFRLRVDAGTKVGLAPQVRVSYDLTGDGTFDRIETFRYFATDPVAGWEEYTQAVGAQATTGSLGELKNGTVRLEIWNALGNGTSQVQTGTDAAVLRIPYQ
>NZ_CP029361.1|WP_044375541.1|3188019_3189324_+|extracellular-solute-binding-protein
MPIARAAKRATARLGAVVLAGALLAACGSSDSSDSSDSAGGKVTLNVDLFGSFGFKEAGLYEEYQKLNPNITIKQSDTQDEADYWKSLQTRLAGGGGLADVQGVEVGRIASVTQQQSDKFQDLKEFGADKLKGEFAEAKWSAATTKDGKILGLGTDVGPEAMCYRTDLFKQAGLPTDREELAKKWATWDGYLELGKEYKKKAPAKSAWLDSVGSLHGIMIGQEKERYYDASGELIYDKNPAVKEAWDTSVEAAEAGLSAKLDQWSPQWNQAFSAGSFATIPCPAWMLGYVKGQAGDAGKGKWDIAKLPGGAGNWGGSYLSIPRAAKHKEEAYKLIEWLTAPEQQAKVFQKQGNFPSSTGAIETIAGAKDEYFSGAPIGQIFGDAAKESPVQVLGVHDQNVMQQITNALSEVERKGVSSDKAWGTAKKGVDNVIG
>NZ_CP029361.1|WP_030815411.1|3189455_3190436_+|sugar-ABC-transporter-permease
MSLTATAKAGPRSPAGTGPGPDDGRAAALRRTWRKASPYAYIAPFFTLFLAFGLFPLVYTAFVSLYRVELQTSGEMEWRGIANYTALFTDEYFWTSLRNTFTIGVLSTVPQLAMALGLAHLLNYKLRGRTFIRTAILLPYATSVAAATLVFAQLFGKDFGLINYAIGLVGFDPVDWQTGTVASQIAVSSIVVWRWTGYNALIYLAGMQSIPHELYEAAEMDGASRWRQFVHVTLPGLRPTIVFTVIISTIGATQLFGEPLLFEGSISGGISHQYQTLGLYMYEQGWGFFHLGRAAAIAWVMFVLIVVLVGVNALIARRRARKEAGR
>NZ_CP029361.1|WP_030815409.1|3190432_3191347_+|carbohydrate-ABC-transporter-permease
MTALAAPPTAPEKGDPPQTPPPGRRIGKGGAGRTMKGGWLSYLILGFALLISAFPFYWTIVAASRSNADMAKVPPSLLPGPNLIKNFEQVLEEADIGKALLNSLIVSGSITIGTVLCCTLAGFAFAKLKFKGRNALLTLTIGTMMIPPQLGVIPLFMLIAELQWVNQLQAVILPGLVSAFGVFFMRQYLVQSLPDELIEAARVDGASTARIFWSIVIPIARPGMAVLGMLTFMTAWNDFFWPIIALSSQEPTVQVALRQLGGGYVNDQSVIMAGTLLGTLPVLLVFGLLGRQIVGGIMQGAVKG
>NZ_CP029361.1|WP_030815403.1|3193399_3193972_+|DUF417-family-protein
MSSHTVEPSLPPTSGNPESPLAGTQLERTARPPAARFPRRLAELVDTHALTLLRATVGIVFVGFGVLKLFPSASPAEQLAVDAATKMTLGLVPETVLLLSLAALETAIGIGLITGRRLLRPALVAFFLHMGGVFSTLFLLPDAMWQPHSPAPTMEGQYVVKNVVLVAVCLVVAAHEWSREHRSRRPDGVG
>NZ_CP029361.1|WP_044376678.1|3194077_3194503_+|hypothetical-protein
MTKEPAAGTGDEPLPFAPLPPGARGPLDPPPLETPPPGFGPRLVIAEGVLTKAAGAADKVFDDFHKPARSVDEPTGKAARELAGWESAAALRTSLKNWQNQSKAAETWLIRIAESLRSSSHAYTSTSQTVDQQFSVLRTYG
>NZ_CP029361.1|WP_044376680.1|3194502_3194730_+|hypothetical-protein
MPAFYRELLDTDLSVLDALADTWRDAHTATEKLPKRMMDDVLRPLRDKGYWEGAAAPHARSLIDWTERIPSGRDK
>NZ_CP029361.1|WP_044376682.1|3194726_3195209_+|hypothetical-protein
MTGAGRPTVRHLAAASALAAVSLSLTTGCSDAALCGPPPLDEVSQMDLYGTYAGPHGSRLTLTNIGGTTVTFTARDWPAENGVGILAEDAPSFDGEGTWSLVNDPGEAGLIRLSFENRDAGSSGTPLQQLEVGKGEGDAKPLLFAKLGDPDACRVYELER
>NZ_CP029361.1|WP_030815388.1|3196994_3197438_-|SnoaL-like-domain-containing-protein
MSIATPANTRTVVEELLRRIGEGNPERIAEMYAEQGDWKLDWPEAEHGRTATPWIRHRSTRADAAAHYRELAEHHVPEHVATEVERILVDGSDAVVLGEIRQTARPTGRAYKARFALHITVADGLVTRHHVYEDSLAIAQAFEAKDQ
>NZ_CP029361.1|WP_063837837.1|3198186_3198816_+|hypothetical-protein
MTEHGGAADQPQNTPRSRLADYAEMSGPGRSVPASREAVGETAGGGGEPAPLARQEPALEAPSAEVDDPGALLDDPEVVSRKREFARLLGEFRRTAVLVPLGDEPGPEEERGMLTADFNGIRFILAFSDEQALARYAQARGEFAREWSYRTVLGARLLDVAVPAAAVPCGVALDCADGTDGMVFPPVTGIVPDAAAVDREVGGEARVGR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029361_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_5

3393271-3393381

Orphan

Consensus_repeat	Method
GTGGGAGCGGAGGCGTACGGGCCCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_5

>merge|NZ_CP029361|5|3393271-3393381|CRISPRCasFinder
GTGGGAGCGGAGGCGTACGGGCCCGTGCGCGCCGGGACCGCCGTGGGAGCGGAGGCGTACGGGCCCGTGCGCGCCGGGACCGCCGTGGGAGCGGAGGCGTACGAGCCCGTG

>NZ_CP029361|5|4|3393271-3393381|CRISPRCasFinder
GTGGGAGCGGAGGCGTACGGGCCCGTG	CGCGCCGGGACCGCCGTGGGAGCGGAGGCGTACGGGCCCGTGCGCGCCGGGACCGCC
GTGGGAGCGGAGGCGTACGAGCCCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_044377240.1\|3387354_3387756_+\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP029361.1\|WP_044377256.1\|3399356_3400436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044377254.1\|3396985_3397993_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375425
NZ_CP029361.1\|WP_162648879.1\|3394735_3396133_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP029361.1\|WP_003967571.1\|3387869_3388190_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239551
NZ_CP029361.1\|WP_044375126.1\|3382654_3383821_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|236095
NZ_CP029361.1\|WP_044377247.1\|3392127_3393162_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP029361.1\|WP_052807838.1\|3396146_3396980_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP029361.1\|WP_044377242.1\|3390552_3391299_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP029361.1\|WP_078942440.1\|3388186_3388489_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_078942452.1\|3388701_3389601_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP029361.1\|WP_010063176.1\|3401190_3401406_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030812805.1\|3383898_3384444_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|371210
NZ_CP029361.1\|WP_032794671.1\|3391291_3392005_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP029361.1\|WP_030812765.1\|3403523_3404057_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030812803.1\|3384602_3387194_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP029361.1\|WP_044377259.1\|3400432_3401095_-\|phosphopantothenoylcysteine-decarboxylase	unknown	unknown	gnl\|CDD\|235513
NZ_CP029361.1\|WP_044374884.1\|3404175_3404457_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP029361.1\|WP_044374844.1\|3405747_3405990_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_052807841.1\|3397989_3399360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223584

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_044377240.1\|3387354_3387756_+\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	3.53872e-19
NZ_CP029361.1\|WP_044377254.1\|3396985_3397993_-\|hypothetical-protein	gnl\|CDD\|375425	pfam17914, HopA1, HopA1 effector protein family. This family includes the HopA1 effector protein from Pseudomonas syringae. Structurally this protein has an alpha + beta fold. The effector protein HopA1 was shown to affect the EDS1 complex by binding EDS1 directly and activating the immune response signaling pathway.	8.61885e-47
NZ_CP029361.1\|WP_162648879.1\|3394735_3396133_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.52254e-35
NZ_CP029361.1\|WP_052807838.1\|3396146_3396980_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.50821e-14
NZ_CP029361.1\|WP_044375126.1\|3382654_3383821_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|236095	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC.	0
NZ_CP029361.1\|WP_044377247.1\|3392127_3393162_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	1.08887e-29
NZ_CP029361.1\|WP_003967571.1\|3387869_3388190_-\|hypothetical-protein	gnl\|CDD\|239551	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation.	1.96422e-06
NZ_CP029361.1\|WP_078942452.1\|3388701_3389601_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	9.90159e-06
NZ_CP029361.1\|WP_030812805.1\|3383898_3384444_-\|YbjN-domain-containing-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	8.82713e-11
NZ_CP029361.1\|WP_032794671.1\|3391291_3392005_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.96394e-84
NZ_CP029361.1\|WP_030812803.1\|3384602_3387194_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP029361.1\|WP_044377259.1\|3400432_3401095_-\|phosphopantothenoylcysteine-decarboxylase	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	3.99547e-22
NZ_CP029361.1\|WP_044374884.1\|3404175_3404457_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.61645e-17
NZ_CP029361.1\|WP_052807841.1\|3397989_3399360_-\|hypothetical-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.32998e-08

>NZ_CP029361.1|WP_044377247.1|3392127_3393162_-|LLM-class-flavin-dependent-oxidoreductase
MNPAVLYPLQPDHPELVAPFAALVRRTGARRLWMCQSFQAETHQVLAYLAGAGHTVPVGTSVTLLPLRHPYEAALQARSLALLTGEPVVAGFGIGNPDFVAGLTGRPYDSPRTAVRDYLRSVRALLDGERVEAGGPYHHLDGALPLLPHAPRVEVGAGVLRPGMARTAGEAADVAITWMTPPGYVAGTLRPALEEGAAAAGRSRAPRIATAVHVVLDRPGRDVRALALAATAGHREAPHYAAMLRAAGLTLDPHDPAGSADALLRHRVVVAGSAQEIAGALDAYRRSGVDEVLLNPTGVLLGEGVHAAVEDLEEILAACRSFLPGDRQEAASVEPGERPGRLVG
>NZ_CP029361.1|WP_032794671.1|3391291_3392005_-|ATP-binding-cassette-domain-containing-protein
MSKRFGDHQALDDVSFALRPGKVTGLLGPNGAGKSTLLRILLGLARPDAGSAEVLGGEPLSAPERAQRVGVVMDAIGFHPRVTVRRQLEISARSLGLPSSRIAEVIGQVGLDGAERKRVKACSTGMRQRLALAVALLPDPELLILDEPLNGLDPDGIRWMRRLVERSADEGRTVLIASHMLSEVEQSVDDVVVLRRSVLFTGSLQELVRRGGGRLEDAYFALVEGADAAPRPEVTRA
>NZ_CP029361.1|WP_044377242.1|3390552_3391299_-|ABC-transporter-permease
MPEVLRNQLSAELLKLRTGLALPALLLVALAFCALGQLGLVYAESDPASAGAELTANIVGLGASAALFATLLGALHVTGEFSSGSIGRTVLYAPGRSAVVGAKLLATTVSGLVFGVAAVACSLAVGYAALAAKDSGLTVDGSTWTTAAAVLTICTLAGPWGAAIGFVVRNRLAAVLGLVVWGTLGQVLVLGQLPELGRFLPEGAQFALLGDASGFPDALAAPYGLLLLVGWTAAMSLAGTRLFTHRDV
>NZ_CP029361.1|WP_078942452.1|3388701_3389601_+|helix-turn-helix-transcriptional-regulator
MRSGRIARAEVAPAPCLMEFALLHPDPDDPEWLRPVPPSAALAQHLHPIEREIQERRRHSVELTESFEPFMDISAQDPPTTHAITVLEGVNRINAALDLATAECRTEVLTVQPGGGRSEDRLSEALERGMSVVDRGVSIRTLYQHTVRHSPGTLAYAERMADTHVEIRTLEELIERLIIFDRTVAFIPAQDDRQVALELRHPGLVEYLVKVFEQLWTRAAPLMEEVKYDPTPQGVSGVQRSIAQLLVEGHVDDSIARRLGMNVRTCRAHVAKLSAALGSSSRAQLGYLIARSGILESDS
>NZ_CP029361.1|WP_078942440.1|3388186_3388489_-|hypothetical-protein
MYKRMLRSALAASFVAAVAFGALGGSGIASSAEAVSVPGDIAWGVEVAAAPGDIAWGAEGAAAPGDIAWVVPAAAPSDIAWSMSPADGDIAWVAPARTVA
>NZ_CP029361.1|WP_003967571.1|3387869_3388190_-|hypothetical-protein
MSTPPDDRTFRREMATAYRSGWHFIDLLTALPRRGDSLMVTLFGEPIVVVMEEDEDVRAYRCLRRPRGAPQPVRCAVRYGMIFVNLDQRDHELFDAEPLSATPRSA
>NZ_CP029361.1|WP_044377240.1|3387354_3387756_+|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase
MADVRNPSPEYVAFWRESHLSTLTTPRPDGTPHVVPVCVTYDPEAGIARVITDGGSRKVAHIRAAGPDGARVAVCQIDRARWATLEGRAVIRTEPETVRDAEARHEERYGRPPRINPTRVVIEITLDRALGKA
>NZ_CP029361.1|WP_030812803.1|3384602_3387194_-|ATP-dependent-chaperone-ClpB
MDAELTNKSRDAINAATDRAVKDGHPDLTPAHLLLALLEGRDNENVTDLLAAVEADQALVRGETERLLGGLPSVTGSTVAPPQPNREMLAVIQDAAQRAKELGDDYISTEHLLIGVAAKGGRAGEILDGQGAGAKKLLAAFETSRGGRRVTTPDPEGQYKALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVSLDLGAMVAGAKYRGEFEERLKTVLSEIKESDGRIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPLEIDELQRSVDRLRMEELALKNESDPASKQRLEKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKERLDELRGQAERAQRDGDFDAASKLLYGEIPGLERELEEAAEAEQEASKDKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGETQKLLRMESELGKRLIGQTEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFLMDPLVKPEVKKQQVLDVVRASFKPEFINRLDDLVVFSALSGDELAHIAGLQIDRLAARLADRQLTLDVTPEALAWLAQEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEVRDGDTVRVDRAEDGLIVGPAS
>NZ_CP029361.1|WP_030812805.1|3383898_3384444_-|YbjN-domain-containing-protein
MSIDPSSIPNFGGQPEPQAAGPEGPVVPDQDLVKQLLDQMELKYVVDDEGDLAAPWEEFRTYFMFRGEAEQQVFSVRTFYDRPHDLDQRPVLLDAIDDWNRRTLWPKVYTHAHEGEEGETGSVRLIGEAQMLIGTGVSLEHFVSSTVSWVRASIEFDKWLIERLGIQPAEGKTDGEEPAGA
>NZ_CP029361.1|WP_044375126.1|3382654_3383821_+|pyridoxal-phosphate-dependent-aminotransferase
MTQGRPLLNRRLAAFGTTIFAEMSALAVRTGSINLGQGFPDTDGPEEIREAAVRALRAGHGNQYPPGPGVPELRNAVAAHQERFYGLTWSPETEVLVTTGATEAIAASLLALLEPDDEVIAFEPYYDSYAACIAMAGARRVPLTLRAPGFRLDLDELRTLITPRTRLLLLNTPHNPTGTVLTPDELAGIAALAVEHDLLVVTDEVYEHLVFTGAHHPIAALPGMRERTVSISSSGKTFSYTGWKIGWVTGDAPLVAAVRSAKQYLTFVSGGPFQYAIAEALALPDTFFTGFRADMHRKRDLLAKGLRAAGFRVYEPEGTYFITTDISPFGDEDAYAFCRALPERCGVAAVPVSVFYDDPEAGRSQVRFTFCKRDDVLEEAVERLARLG
>NZ_CP029361.1|WP_162648879.1|3394735_3396133_-|insulinase-family-protein
MSVLPGGLRVCVESVPQYGRGLAAVALTVAAGGDDDPAGRHGTAHLVEHLMFPRSGGGSADPTGEGYAALVAGAGGVCNAETHRDHTVFHTTVPAESLPDALAWEARRLLGFAPTEDVIRTETDVIGEEIRGAGDAGRSWESALGALYPGSRDSFGTAAELAGITAGEVEAFFRAHYTARRMVLSVVGDVDPAGVMAVVRAVFAGVGVIRVAGEAGAAEGIRAAGEARTAREIRTAPLPSGRPGVAVGHPLPDPVADRPAYLAQAVLAQVLGRSRLPALARSARDGHRLTSATVTCGYHGQWLASAAPDLTLAVLGRAPGTEVDAAVGIWRSVLRAVAEGPLPEAEHRRAVNSLLVAWHRQADSLPTRAVALGRDALLLPGSAGPDALPAELRRTTPAEVAAAARALLEGPATVTELAPQARTVPTARAHTVLTARAGTELAPQARTVPIARAGTELAPQKGTVG
>NZ_CP029361.1|WP_052807838.1|3396146_3396980_-|class-I-SAM-dependent-methyltransferase
MTTTTETTENPETVATTEVPEAAGGFGAAITVAYSDALAGVYDDIYPSTPDLDDIATYLLTLAEPGASVLELGVGTGRVALPLAERGFDVSGVESSEGMLARLAEKDPEGRITPVHGDFAGLDLGRSFDVVLAPFNVLCCAMAVDEQIALMHAMARHVTSEGHVVIETFDPSDYHVQKKNEVNTYPIGARGALIESVGVLPASQNMMLQSTLFLDGDAPKSATTVMRYVWPGELDLLGAIAGLELVGRYAGWREQPFDGGDSRKMCVSVFRPLNQAG
>NZ_CP029361.1|WP_044377254.1|3396985_3397993_-|hypothetical-protein
MTLTPAPARPAGLAPRLAAALDLVDVRADGLEARVAGRTLTADSPRDLRGRLTNALYEEFHAGNGAHRRDADAAPRRTLRDSALERRLAAAVPHPTTPVTGRLLEVGEGGELVVRLPEITARIAADRLIGPAAPVPGELVQVALEAARPALSPGFFYVMGSRPLPVPAGPVRRLFLHARDAAAAVGLWAVALAALEDAGARYHAKVLSDEDDYPRRDSVVVYLHGDHAPAERAVAAAVRDLPGLGGDTSLFTARLAPGVAAAWDPRDPRPGRDGMSFGQHRSFALATALVDHAQGAGPGGGLADHVVRAFRAAGIDPEHPENNLAGTPSTATAGV
>NZ_CP029361.1|WP_052807841.1|3397989_3399360_-|hypothetical-protein
MTTTTSTTAAPTEAVATASTAATASTADAPALIRFRPTGLDTAPEVNALLERLGLGPFAPDGLTAFGGRNDNWAGTTTRGRQVFVKTVARAADGSRPEIDRALAFEATAARLPAGSPLRTPEHLGTDRESAVSAFRLLPGSRSGSEVALDGDFDEALCREAGRAVATLHTLGTAGGASGGEAPDPASAPAIDTGEAPLPPMRWLRAFPWSEVQDRSMAQIAAWKLVQDDTEVVAALHRLRERERTAPHTPAHCDLRFDQFLVHDGQLFLCDWEEFRLADPARDVGAFVGEWLFQATYSVFAPTGEPTSAKDAVAPGFDLSHEEIVERGAAGLRHHIPRIAAFWQGYTECRTPDPELAERAVGFAGWHLYDRLIATAQAHAVLNPVARAAAGIGRTLLLNPAGAVATLRLADPAVPHPAVTPAAVTPAAVVPAAVLPTAVAHPAQPHPADAPSGSPR
>NZ_CP029361.1|WP_044377256.1|3399356_3400436_-|hypothetical-protein
MNVASPATELGVPVAAYGTGLQVTRVHRGADGDLGGAGDFLWWLGPGPRRGGPLRVPARSAALVPDLGSAEGAALLATGTPYGDGLLHRAAGSASAAAWLRDPRPQAGRLVAHSLAAAARALRTLHGVPLPSGPQPLPPPGVRRLREWAAGTAPLAPAAARLRRRAREMWGEGRTERLLGWADEAVRASGAGAPVVPLHGWASTGSLVPPRSRGRVVLLTGEDLGAGRRELDLGWMLGDLVELAWSSPLHRAAAESPGLLSVTDLQRVFLGAYEADGSDTDGREGGGHDAGVREDGDHGPAGPVYDPVAVGRCAVLRVVTHMRDFATYCEWSDELLDYLAFTAELIDEEGRRAVPRGVS
>NZ_CP029361.1|WP_044377259.1|3400432_3401095_-|phosphopantothenoylcysteine-decarboxylase
MEEQQRDFERILVVGTGALGVAFLPFWINWLGNSFPDMEKRFALTRSACRFVSPDAVAVLSGKEVFIDDWNAFSGVDVPHVDIAEWADLILVHPATLNFVGRFALGVADTPLMVALQTTRALVGVAPSLPPGALGSPVVQGHLAALRERPGVVLAPTIPARSARTGEVEDGGSAPLNELYDLCVAYRKGDAGVGTDGARSRVGAGVAGDRVGTGVAGGSS
>NZ_CP029361.1|WP_010063176.1|3401190_3401406_-|hypothetical-protein
MQNVTEKDLFDGYTAYTSAEELGLHDGQEAAPAFSPTIPWAIRATIITARSSQQCAAALGSLAAKTVENKC
>NZ_CP029361.1|WP_030812765.1|3403523_3404057_+|hypothetical-protein
MTDTTSRPLPASTEDDHYGEISVELLGENREKLVVSGERIPTVTIVRAPEAEVDDHIVIGTRDPRHLTITVDGEDATIKPGKGKLRRQTYRVDVHHGGIHYRLVPNSIPFSKLTRDGKHLGDFSSDGDRRVIAEWQEEAGTPEPLDAAIGYALSAAFGTGGQPMWMMLVDAVSAALP
>NZ_CP029361.1|WP_044374884.1|3404175_3404457_-|response-regulator-transcription-factor
MRTGGRAGAADGGRPEMDFATLTERELEVLVLLASGEQNRWLARRLGITERTVRAHTTSIVRKLNLKSRFEAAIVSYLHAEDIRGHQGAASVI
>NZ_CP029361.1|WP_044374844.1|3405747_3405990_-|hypothetical-protein
MEITVARVATDAAPAGIAVLRLIGMLPAEWECGQRIEDDRITVLVRGSGRDAGDVTGVRERCAEALRDRTLDGWVLEGAG

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Crispr_ID: NZ_CP029361_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_6

3784146-3784251

Orphan

Consensus_repeat	Method
CCAGCCCGTCCGGCGCGTGAGGACGGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_6

>merge|NZ_CP029361|6|3784146-3784251|CRISPRCasFinder
CCAGCCCGTCCGGCGCGTGAGGACGGAACCCTTGCGGTGGTGGGCCCGCGCTTGCTGTGGGCCGGGGCCCGGCGAACCAGCCCGTCCGGCGCTTGAGGACGGAACC

>NZ_CP029361|6|5|3784146-3784251|CRISPRCasFinder
CCAGCCCGTCCGGCGCGTGAGGACGGAACC	CTTGCGGTGGTGGGCCCGCGCTTGCTGTGGGCCGGGGCCCGGCGAA
CCAGCCCGTCCGGCGCTTGAGGACGGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_044372247.1\|3782039_3782996_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP029361.1\|WP_044374674.1\|3791944_3793216_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP029361.1\|WP_030707566.1\|3777621_3777843_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376437
NZ_CP029361.1\|WP_030806924.1\|3786589_3788383_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP029361.1\|WP_044372245.1\|3781393_3781861_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP029361.1\|WP_030707581.1\|3797691_3797937_-\|DUF2630-family-protein	unknown	unknown	gnl\|CDD\|378515
NZ_CP029361.1\|WP_044372243.1\|3779398_3781225_-\|butyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP029361.1\|WP_044372241.1\|3775756_3777574_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|271321
NZ_CP029361.1\|WP_032752670.1\|3791294_3791948_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP029361.1\|WP_030806906.1\|3797244_3797646_+\|RNA-binding-protein-S4	unknown	unknown	gnl\|CDD\|224109
NZ_CP029361.1\|WP_044372237.1\|3771945_3773253_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP029361.1\|WP_030806941.1\|3775200_3775692_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NZ_CP029361.1\|WP_078955622.1\|3793149_3794739_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378410
NZ_CP029361.1\|WP_030806918.1\|3789498_3791112_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP029361.1\|WP_030806946.1\|3773299_3774124_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NZ_CP029361.1\|WP_044374675.1\|3788620_3789412_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP029361.1\|WP_044374676.1\|3784306_3786424_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP029361.1\|WP_044372239.1\|3774325_3775117_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP029361.1\|WP_010060297.1\|3777946_3779245_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP029361.1\|WP_044374672.1\|3795033_3797103_+\|PhoX-family-protein	unknown	unknown	gnl\|CDD\|253386

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_044372247.1\|3782039_3782996_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.23248e-66
NZ_CP029361.1\|WP_044374674.1\|3791944_3793216_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.43214e-42
NZ_CP029361.1\|WP_030707566.1\|3777621_3777843_-\|hypothetical-protein	gnl\|CDD\|376437	pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1. Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localized to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localize predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition.	0.00689367
NZ_CP029361.1\|WP_030806924.1\|3786589_3788383_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP029361.1\|WP_044372245.1\|3781393_3781861_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.0014028
NZ_CP029361.1\|WP_030707581.1\|3797691_3797937_-\|DUF2630-family-protein	gnl\|CDD\|378515	pfam10944, DUF2630, Protein of unknown function (DUF2630). This bacterial family of proteins have no known function.	1.19441e-31
NZ_CP029361.1\|WP_044372243.1\|3779398_3781225_-\|butyryl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0
NZ_CP029361.1\|WP_044372241.1\|3775756_3777574_+\|redoxin-domain-containing-protein	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	6.44684e-165
NZ_CP029361.1\|WP_032752670.1\|3791294_3791948_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.05991e-65
NZ_CP029361.1\|WP_030806906.1\|3797244_3797646_+\|RNA-binding-protein-S4	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	4.67997e-22
NZ_CP029361.1\|WP_044372237.1\|3771945_3773253_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	5.8333e-33
NZ_CP029361.1\|WP_030806941.1\|3775200_3775692_-\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	1.57308e-31
NZ_CP029361.1\|WP_078955622.1\|3793149_3794739_-\|hypothetical-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	3.53725e-59
NZ_CP029361.1\|WP_030806918.1\|3789498_3791112_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP029361.1\|WP_030806946.1\|3773299_3774124_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	2.85268e-26
NZ_CP029361.1\|WP_044374675.1\|3788620_3789412_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	4.68794e-12
NZ_CP029361.1\|WP_044374676.1\|3784306_3786424_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.9573e-52
NZ_CP029361.1\|WP_044372239.1\|3774325_3775117_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	7.55695e-116
NZ_CP029361.1\|WP_010060297.1\|3777946_3779245_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP029361.1\|WP_044374672.1\|3795033_3797103_+\|PhoX-family-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	0

>NZ_CP029361.1|WP_044372247.1|3782039_3782996_+|pirin-family-protein
MPAVTVDNPLTLPKVAASGDAVARPVLAVTTAPSGFEGEGFPVRRAFAGINYRHLDPFIMMDQMGEVEYAAGEPKGTPWHPHRGFETVTYLIDGTFIHQDSNGGGGTIENGDTQWMTAGSGLLHIEAPPESLVQSGGLFHGLQLWVNLPKADKMMDPRYQDIRGGEVQLLASPDGGALLRVIAGELDGHQGPGITHTPITMIHATVRPGAEVTLPWREDFNGLAYVLAGRGTVGAERRPIAMGQTAVFGAGGSLTVRADERQDGHTPDLEVVLLGGRPIREPMAHYGPFVMNSQAELKQAFEDFQAGRLGTVPAVHGM
>NZ_CP029361.1|WP_044372245.1|3781393_3781861_+|SseB-family-protein
MYGYDQNPGAQQQMGQMGQMGRMGGGYGEQPLYPEPSPPSLADAVRAFTTGSLSAEDFQQIFATSKVYCPRGDNPGFLALHNTQQPVIPMFTTLKELRRYAGKESKYFVITGAEVIDLLPTGYGFVLDMEGDHRMVFDAKAVEQMVDFAMRRMYG
>NZ_CP029361.1|WP_044372243.1|3779398_3781225_-|butyryl-CoA-dehydrogenase
MGHYKSNLRDIEFNLFEVLGRDKVYGAGPFGEMDVDTAKSILDEVARLAENELADSFADADRNPPVFDPETKTAPVPASFKKSYQAFMDSEYWRLGLPEEIGGTTSPRSLIWGYAELLLGSNPAVWMYSSGPAFAGILFDEGNEDQKKIAEIAVEKQWGSTMVLTEPDAGSDVGAGRTKAVQQEDGSWHIEGVKRFITSGEHDMSENIIHYVLARPEGAGPGTKGLSLFMVPKFHFDWTTGELGERNGVYATNVEHKMGLKASNTCEMTFGDQHPAKGWLIGDKHDGIRQMFRIIEFARMMVGTKAIATLSTGYLNALEYAKERVQGPDLANFMDKTAPKVTITHHPDVRRSLMTQKAYAEGMRSLVLYTASVQDAIQEQEAAGEDAKALNGLNDLLLPIVKGYGSEKSYEQLAQSLQTFGGSGYLQEYPVEQYIRDAKIDTLYEGTTAIQGQDFFFRKIVRDQGASLNTLSEEIKKFLAGAQGNEELAPALDSLAKAAVDLEAIVGTMITDLTATGEDVKNIYKVGLNTTRLLMASGDVVVGYLLLKGAAVATEKLPTASAKDVPFYQGKIAAAKFFAANVLPGVSTERALAESIDNSLMELDEAAF
>NZ_CP029361.1|WP_010060297.1|3777946_3779245_-|M18-family-aminopeptidase
MSSPLRFDRAHTDDLMTFLAASPSPYHAVANAAARLAEAGFRQVEETAAWDGSAGGKYVLRGGAIVAWYVPEGAEAHTPFRIAGAHTDSPNLRVKPLPDTGAHGWRQIAVEVYGGTLLNTWLDRDLGLAGRISLRDGTHRLVNIDRALLRVPQLAVHLDRSANTEGLKLDRQKHMQPIWGLGDVEEGDLIRFVAEEAGVDAEDVTGWDLMPHAIEPPSYLGRDRELVAGPRMDNLLSVHAATAALAAVAGLPDADIPYIPVFAAFDHEENGSQSDTGADGPLLGSVLERSVFARGGTYEDRARAFAGTVCLSSDTGHAVHPNYAERHDPTHHPVANGGPILKVNVNMRYATDGSGRAVFAAACEKAGVPWQSFVSNNAMPCGTTIGPITAARHGIQTVDIGVAILSMHSARELCGADDPYLLANALTAFLAG
>NZ_CP029361.1|WP_030707566.1|3777621_3777843_-|hypothetical-protein
MGLGGCILLIGAGAILAFATDWKMDTVNVDLVGWIMMLVGLVGVFVYMSIARRRRMVVPPTTTVVQDDQQRYQ
>NZ_CP029361.1|WP_044372241.1|3775756_3777574_+|redoxin-domain-containing-protein
MATRARVRAPELIGKGGWLNTGDQQYTLADLRGRIVILDFWTFCCVNCLHVLDELRELEEKHRDTVVIIGVHSPKFVHEAEHQAVVDAVERYEVHHPVLDDPELATWKQYAVRAWPTLVVIDPEGYVVAQHAGEGHAHAIEKLVEELEAEHGAKGTLRRGDGPYVAPEPVATHLRFPGKALLLPDGGFLVSDTTRHRLVELDADGETVRRHFGTGERGLSDGGPDEARFSEPQGLAVLPDGRVAVADTVNHALRALDLTTGVTSTLAGTGRQWWQGTPTSGPAREVDLSSPWDLAWFGDRLWIAMAGVHQLWTYDPGSATVRVAAGTTNEGLVDGPAAEAWFAQPSGLAVSADGERLWVADSETSALRWVDRDEHVHTAVGTGLFDFGHRDGAADQALLQHPIGVTALPDGSVAISDTYNHALRRYDPASGEVTTLATDVREPSDAVLVDGDLVVVESARHRLTRLRLPEEAVRVADQAHRTQRAATEIAPGTLRLDVVFQAPAGQKLDTRYGPSTRLLVSATPPELLADGSGAGTDLGRDLVLADGVTEGVLHVSAMAASCDDDPANEYPACHVHQQDWGVPVRVTAAGASRLALVLAGMDEQG
>NZ_CP029361.1|WP_030806941.1|3775200_3775692_-|hypothetical-protein
MRLLVRERLFAIGDDYWIEDDGGRKVFLVDGKAMRLRDTFELKDTDGRVLVELRQKLISLRDTMLIERGGEELAKVKRKRLSLLRNHYRVTLVDGTELDVSGKILDREFAIEYDGELLAQISRRWLTLRDTYGIDVVRDDADTALLIAVAMCVIVLADKESEG
>NZ_CP029361.1|WP_044372239.1|3774325_3775117_+|carbon-nitrogen-family-hydrolase
MRASLIQIAVDPDESVEARRVRAASLVVAQRGADLVVLPELWPVGAFAYTAFEAEAEPLEGPTHEAMAKAAAEAGVWLHAGSFVERADDGTLYNTSLVFSPEGERTAAYRKIHRFGFDQGEAVMMGAGEELVTVALPDTTLGLATCYDLRFPEQFRGLVDAGAETLVVAAGWPERRRSHWTLLAQARAVENQAYVLAVGTAGTHGDIQQAGHSIVVDPWGEVLAQAGADEEVLTVELDADKVRATREQFPALKDRRLGLTSPL
>NZ_CP029361.1|WP_030806946.1|3773299_3774124_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTVHPSLQPYTDAATHSIEAIAELVKPLPESEWNRRTPCPGWSVRDIVSHVIGMECEMLGDPRPIHTLPRDLYHVQSDFARYMEMQVDVRRHHTSPEITAELEYVLIRRARQIRNESRSPETKVRAPLGAEQTLETALNLRAFDVWVHEQDLRTTLGQPGNLDSPGALITRDMLLLGLPKVVAKGAGAPANSAVVFDVHGPVEFLRTVRVDAEGRGSIDGAPSLGPAVTLSLDWETYVRLACGRVRHAAVADRIKVEGDQELATAILDNFTVTP
>NZ_CP029361.1|WP_044372237.1|3771945_3773253_+|MFS-transporter
MSSAAPTLSLPGDPPGGRRAAWVWGVGVAVYFVAIIFRTSLGVAGLDAADRFDVNASALSTFSILQLLVYAGMQIPVGLMVDRLGTKKVLTIGVVLFTVGQLGFALSPSYGMALAARALLGCGDAMTFISVLRLGSRWFPARRGPLIGQVAALFGMAGNLVSTLFIARALHSYGWTTTFVGSSLAGVVVLVLLLLFLKDHPEGHEPPPAEHAGAAYVRRQIAAAWREPGTRLGMWVHFTTQFPAMVFLLLWGMPFLVEAQELSRGTAGALLTLVVLSNMVVGLVYGQIIARHHEARTPIALGTVATTALLWASAIFYPADHTPMWLLVVLCLVLGACGPASMVGFDFARPANPPERQGTASGIVNMGGFVASMTTLLAVGFLLDATGDNYRVAFASVFVLEAFGVAQILRLRRRAALREREHHVVSRVEAVHVPA
>NZ_CP029361.1|WP_044374676.1|3784306_3786424_-|SpoIIE-family-protein-phosphatase
MRTEEVLAAIATGLWRWDNAAGTVTLDAEAARLLGLPPEPSSYREAAVRSRFHPVDWNEIYGVVNLAVAEGSLAEARLRIVDERGQVLRTVRSRSKPVFRTDEDADSEAYVLYGTLQEVAEPQPGATDAAHTPITGDWRRSREAFLLDAGRALAEARSTAEVLRVAGSLSMPGFSPDGLAVFGSAGERLTIIGHHGHNIGDEEPFTDMPLDTDYPAAEVVRTGRAIYLPSPDEYRRRYPATWPLARRFGRQSWAFLPLVSSGRTMGAWMAGFQHPVGFSPDERAVLSTVARMLAQALARAGVAETERELSLGLQRSMMPTLGPEIPGMTVAARYVPTGGGLQVGGDWYDMIPLPNGRIALVIGDVQGHDVRAAGLMGQLRIALRAYASEGHRPDAVLARASRFLSGLTDAYESVEGDKEPAAPRFATCLYAEVDPEAGTLDIARAGHPDPVVISADGTAVIRQTAGGLPLGIETDSDYPTTRVVLEPGETIMLCTDGLIETGGHDMATGWTRLRPVLEKPVEDLEQLADALVQAVHGPTSHYTTGPLADRREDDIAVLVLRRESAPAPETAARRSVLTIAQAEPERISVGRQLVRELLHDWSDPEQVDSAVLMVSEMATNVLVHTDGDALMVAEVSGEQGERRLRVEVADASDELPHKRRPGEMASSGRGLVLMEMLADAWGVDPRGEGKSIWFELYESDEPGVF
>NZ_CP029361.1|WP_030806924.1|3786589_3788383_+|aspartate--tRNA-ligase
MHRYRSHTCGELRASDVGTDVRLSGWLHNRRDLGGILFIDLRDHYGLVQLVARPGTPGNEALAKLTKETVVRIDGKVSARGADNVNPELPTGEIEIEVSEVEVLGEAAPLPFTINTEDGVNEERRLEYRFLDLRRERMHRNIMLRSAVIASIRSKMVALGFNEMATPILTATSPEGARDFVVPSRLNPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDVEMSFVEQEDVFQPIEKLMTELFTEFGNGREVTSPFPRIPFRESMLKYGNDKPDLRAKLELVDISDVFADSGFKAFAGKHVRALPVPDTAGQSRKFFDGLGEYAVEHGAKGLAWVRVGEDGTLAGPIAKFLTETDVKTLTERLSLVPGHAVFFGAGEFDEVSKIMSAVRVEAAKRAGHFEEGVFRFCWIVDFPMYERDEETGKIDFSHNPFSMPQGGLADLEEKDPLDILAWQYDIVCNGIELSSGAIRNHEPELMLKAFEIAGYDRETVEHEFAGMLRAFRLGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPTELDETRLRELNIQLRKPVAAKGASEKPADQ
>NZ_CP029361.1|WP_044374675.1|3788620_3789412_+|L,D-transpeptidase-family-protein
MSLPRRPPALLTAPLLALALLLTGCSSGAAPEKAPVGVPGQGAAGPQSDAASALRSSPSPVPAPSPAEIPDLGPETLAQIPDEARQAFVVTGEEADSYRSSAVLYSRADPAQGWEPVAGPWPAHNGMEGWTDHHVAGDRRSPTGVYTLTDAGGRLPDPGALLPYDEHPRFAVDGEGFFGEPLEGSFDYVVAINYNRTEGVSPLNRTRPLGLERGGGIWIHVDHDGPTQGCVSVPEERMEELLRTLDPAMNPVIVMGDAESLAR
>NZ_CP029361.1|WP_030806918.1|3789498_3791112_-|methionine--tRNA-ligase
MAATGSEKQGATAYYVSTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANDVTPQAWADKLVEEAWKPLWEHLNIANDDFIRTTEKRHTDRVQEFVQDLYDKGEIYKGGYEGPYCVGCEEYKLPGDLIDGEGEFAGQKLCPIHKKPVELLKEENYFFKLSEYGPKLLEFYAANPDFIQPESARNEVVNFVEQGLQDLSISRSTFDWGVPVPWDDKHVIYVWVDALLNYATAVGYGANQEKFDSTFPANVHLIGKDILRFHSVIWPAMLMAQGLPLPGKVVANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAISYGSDGSFSWEDFSARYTSELANDYGNLASRVAAMVGKYFGGALPEETAAGDAEQAVRDGLAKAVATADRKIGEELDFQGGILAIFDFVKQVNGYITEQEPWKVAKDTTPEGQARLATILYTAAESLRGVAVLLNSVMPETSQKLWESLGAEESLGALADQKVQDAGAWGILPAGATVTKGAVLFPRLEEKPA
>NZ_CP029361.1|WP_032752670.1|3791294_3791948_+|response-regulator-transcription-factor
MRVLVAEDEEILAELVATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGDDVARRLVASGSRTRILMLTASGTMEDRVAGLDLGADDYVAKPFEFPELVSRVRALRRRSARPVPPQLERHGIRLDTVRRSALRDGRDLDLSPKEFTVLQLLLEADGGTVSAEELLERAWDANADPFTGAVRVCMSKLRAKLGEPALIRTVQGVGYAL
>NZ_CP029361.1|WP_044374674.1|3791944_3793216_+|HAMP-domain-containing-histidine-kinase
MKRPSPLRRLADASKLPHSTIRTRIALVYGGVFLVLGTALLATVNLASRAGTETEARAIASTAVVVVPPGYTVNGPFIARSSTGSPTAYELTDHVSDAAGKQLLNWSFAALLVMTAGAVGVGWWIAGRVLRPVHAMTAKARRLSEKTLHERIASSGPDDELKELGETLDALLGRLEKAFDSQRRFIANASHELRTPLATQRAAIQIGLDDPSPEDLVRTRQTLLDTNRRSERLIEGLLVLARSERGLATDEREVVRLDHVVREETARYPAARSEGAGGGGPEVNVSVAACSVRGNRLLLAQLVANLLANAVTYNVPGGSVQVALSKEGALLVRNTGPVVSEADVPGFFEPFRRGEGRDRMGPGSGLGLSIVRSIAVAHGGTVTAVPGPEGGGLAVTVRLPVDQAPEPASRAAVQSGSPARISR
>NZ_CP029361.1|WP_078955622.1|3793149_3794739_-|hypothetical-protein
MGIRSLLRKVFGRTEQDEPTTATVPPQAERTQPKETEPETTSAAEPAAEPKASIPAPASPSSPVAGPTDRAGSPASDLVAEAFDKAAAAPASPTVPAQGSAPEDALDDAPADAPKDSPKAEKHEEPVAAEPVVVEEPVKAEAPESTPEPITIDLDLDEAAKAAPAQESTPAPAEAPESAPEVPQAAAEAPKATEAPGTSRASETPEAPEAAAAPEPAEAPLVVETLEPAETPVLAETPAPAKTPVVVETPAVVEAPPVVETPAVAETPVAPAAPEPTAPAAAEEPAPAASEPALSEPAPGKPATTLARVKSRAPQLAAPYKAAQAALKAHGLTGLRARVYLVLDRSGSMRPFYKDGSAQHLGDRTLALAAHLDEDPTVQVVFFSTDIDGTGSLELSGHEGRVDELNAGLGRLGRTHYHRAVEEVVADYEKAEATGPALVIFQTDGPPDAKQAARQALTDAARLPLFFQFVAFGEQDAKGFDFLRKLDAPNAGFFHAGPAPREIADAELYREILAGLPDWTAAREAGSGA
>NZ_CP029361.1|WP_044374672.1|3795033_3797103_+|PhoX-family-protein
MRNLLPFISSHPGGRSALTCRFRCGDACFKETPNNSDNEYAGDIIAGAVSRRSMMRAAAVVTVATAAGTAALTGPSAPQAEAAALAGHGNKPGRPQKPGASGARGLRFSPVAPNKDDKVTVPDGYAQNVVIRWGEPILRGAPAFDPDKQTAKAQAGQFGYNNDFLSLLPLRGERGRQVMVANHEYTDEILMFRGYDPANPTREQVKIAWAAHGLSVVVVQEEHRTGKLGPVNRHPLNRRLTATSEFRMTGPAAGSTLLRTSADRTGRKVLGTLNNCAGGTTPWGTTLHGEENFNQYFANGTTAMHKRYGIGTSASERKWERFDRRFDLAKEPNEANRFGWVVELDPYDPDSTPRKRTALGRFKHEAAQPRLTSDGRPVVYMGDDEKFDYLYKFVSSKRMKKGNSRAAREHNLTLLDEGTLYVAKLTGDSPVNEIDGTGKLPNDGEFDGSGVWIPLATGTTSHVPGMTAEEVYVYTRLAGDKVGATKMDRPEDVEPSPRTGRVYVALTNNSDRGKEGKPGADEANPRNANKHGQILELAENWDDPTSDGFAWRLFLVAGDPDDPATYFAGFPKSSVSPISCPDNVAFDAHGNLWISTDGNALGSHDGLFGVATHGDRRGELKQFLTVPTGAETCGPVIQDRRVLVAVQHPGEIDGASVEKPASVWPDGPGKIVRPSVVAVWRKDGRDIGV
>NZ_CP029361.1|WP_030806906.1|3797244_3797646_+|RNA-binding-protein-S4
MVSGDAPQAEGSVRVDVWIWSVRLTKTRAQAAAACRAGHVKVGGDRAKPAQAVRVGDEVRLRHAGRDRVVVVSKIVKKRVGPPVAVECFVDNSPPPPPREIAIQVPVRDRGAGRPTKRDRREMERLQGRSPES
>NZ_CP029361.1|WP_030707581.1|3797691_3797937_-|DUF2630-family-protein
MADSDIFENIDELVSEERDLRDRSVAKMGLSTDEKARLRAVEVQLDQCWDLLRRRRALSEYGEDPSTAKVRPADEVEGYQS

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Crispr_ID: NZ_CP029361_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_7

4235758-4235820

Orphan

Consensus_repeat	Method
CGGACTGCTGATGCGGACTGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_7

>merge|NZ_CP029361|7|4235758-4235820|CRISPRCasFinder
CGGACTGCTGATGCGGACTGCTGACGCGGAACGCTGCTGCGTGCTGCTGATGCGGACTGCTGA

>NZ_CP029361|7|6|4235758-4235820|CRISPRCasFinder
CGGACTGCTGATGCGGACTGCTGA	CGCGGAACGCTGCTG
CGTGCTGCTGATGCGGACTGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_030803938.1\|4231943_4232822_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224098
NZ_CP029361.1\|WP_032793850.1\|4228010_4228661_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP029361.1\|WP_044376884.1\|4238358_4238955_+\|TIGR03086-family-protein	unknown	unknown	gnl\|CDD\|274424
NZ_CP029361.1\|WP_030803971.1\|4225920_4227114_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP029361.1\|WP_044376892.1\|4229845_4230994_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NZ_CP029361.1\|WP_030803927.1\|4235898_4236606_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
NZ_CP029361.1\|WP_044376880.1\|4241576_4242305_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP029361.1\|WP_006125428.1\|4236618_4237353_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376668
NZ_CP029361.1\|WP_030803933.1\|4233911_4234910_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP029361.1\|WP_030803940.1\|4231065_4231956_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616
NZ_CP029361.1\|WP_073780093.1\|4239391_4239976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030803907.1\|4244303_4244906_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP029361.1\|WP_044376878.1\|4242979_4244236_+\|lipoprotein	unknown	unknown	gnl\|CDD\|200598
NZ_CP029361.1\|WP_044376895.1\|4227162_4227837_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_078955710.1\|4240308_4241580_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP029361.1\|WP_030803931.1\|4234984_4235743_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP029361.1\|WP_030803957.1\|4228777_4229518_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP029361.1\|WP_044376888.1\|4232818_4233892_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP029361.1\|WP_044376883.1\|4238869_4239211_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044376885.1\|4237440_4238262_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_030803938.1\|4231943_4232822_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	5.60022e-33
NZ_CP029361.1\|WP_032793850.1\|4228010_4228661_-\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.07992e-38
NZ_CP029361.1\|WP_044376884.1\|4238358_4238955_+\|TIGR03086-family-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	4.44116e-29
NZ_CP029361.1\|WP_030803971.1\|4225920_4227114_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	2.16566e-176
NZ_CP029361.1\|WP_044376892.1\|4229845_4230994_+\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.67775e-51
NZ_CP029361.1\|WP_030803927.1\|4235898_4236606_+\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	1.04352e-60
NZ_CP029361.1\|WP_044376880.1\|4241576_4242305_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.76558e-40
NZ_CP029361.1\|WP_006125428.1\|4236618_4237353_-\|hypothetical-protein	gnl\|CDD\|376668	pfam01927, Mut7-C, Mut7-C RNAse domain. RNAse domain of the PIN fold with an inserted Zinc Ribbon at the C-terminus.	3.9305e-57
NZ_CP029361.1\|WP_030803933.1\|4233911_4234910_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	1.41387e-11
NZ_CP029361.1\|WP_030803940.1\|4231065_4231956_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.36213e-62
NZ_CP029361.1\|WP_030803907.1\|4244303_4244906_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.35769e-43
NZ_CP029361.1\|WP_078955710.1\|4240308_4241580_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP029361.1\|WP_030803931.1\|4234984_4235743_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	2.83345e-85
NZ_CP029361.1\|WP_030803957.1\|4228777_4229518_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.02202e-53
NZ_CP029361.1\|WP_044376888.1\|4232818_4233892_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.42981e-154
NZ_CP029361.1\|WP_044376878.1\|4242979_4244236_+\|lipoprotein	gnl\|CDD\|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	5.39403e-122
NZ_CP029361.1\|WP_044376885.1\|4237440_4238262_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	7.32152e-16

>NZ_CP029361.1|WP_030803931.1|4234984_4235743_-|SDR-family-oxidoreductase
MAATPIAVVTGASSGIGAATARTLAAEGFRVVLTARRTDRIEALAAELNEAGHQATAYALDVTDRAAVDEFATAFRSLAVLVNNAGGALGADPVATGDPADWRQMYETNVIGTLNVTQALLPALTASGDGTIVILSSTAALSSYEGGGGYVAAKHGEHVLAETLRLEIVGTPVRVIEVAPGMVRTEEFATTRFRGDTEKAAKVYAGVDAPLTAEDVADTIGWAVTRPSHVNIDLLVVRPRAQASNTKVHRTL
>NZ_CP029361.1|WP_030803933.1|4233911_4234910_+|endonuclease/exonuclease/phosphatase-family-protein
MSAKRRVFLSATGAAVALAATAAVAVAGPVAKSDGPPESPKPGKPAAASELRVMTLNLWHGGAKVDDGLAKQLAVIEKHRPDVVGLQETSGHSAKEIAEELGWDHWQSDADLGIISRFPFTSEVETSQAAAGVRIRIDEATGQEVELWTAHLGYDPYGPYDACFDGMAVEDIFQREAQSGRTPQAEAIAKDLAPKIAAADETPVLLVGDFNTPSHLDWTEATKDSHCGYGQVDWPVTKIFEGAGLKDSFREANPDPAAVPGNTWSPVYPKHEGSTGVAEPQDRIDFIDYAGDKLTVKDSVSFVEGDPKPVPDQAGNVWPTDHAAVLTTFTVG
>NZ_CP029361.1|WP_044376888.1|4232818_4233892_+|ABC-transporter-ATP-binding-protein
MTVSVHLKNLRREFGSTVALDGLDLDIAPGELVALLGPSGCGKTTALRIVAGFETADGGELLMDGEDVTSVPANRRDIGMVFQSYSLFPNMTAAENIAYGLRVRGRGAAERKARAGELLELVGLPGREGDYPHQLSGGQQQRVALARALAISPKVLLLDEPLSALDAKVRLTLREEIRRIQLELGITTVFVTHDQEEALSMADRVAVMKDGRLEQCAAPGELYDRPATPFVAEFVGTMNRLPGTVRDGGVVELFGRRLPIHGDRPAPGAEVDVLLRPEGLAVGAADDGTGAPATVRVATFLGATTRLHLTTDSGAACKADLPSWEATALAPGTRCTITPHENPVLVAERAGAPSLKV
>NZ_CP029361.1|WP_030803938.1|4231943_4232822_+|ABC-transporter-permease-subunit
MARMKFTSRAVVLPLAALYFLVPIGASIWFSVNEVEGVSFDAYTQGLGTEGLTTSLMLSVRLGLATIVCGLLLMVPTLVAVALYLPGLRRTVEVLCMMPLVVPPIALVAGVTTVLSWEQDLADTPFYMTFQMLRDESFPLVLVLVYTVMSLPFLYRSLDAGLRAVDLRTLVEAARSLGASRLQTLWQVIVPNLRTAVVGGAVLSLAMVLGEYTVASVLSYRPFSVWMVEIKDSEAQLSVAAAMLSLLITWGLLLLLTTLAGGRGRRRRTPVDSGREDREDRESRDDRKKTVS
>NZ_CP029361.1|WP_030803940.1|4231065_4231956_+|ABC-transporter-permease-subunit
MPPAPDVRGGGAPRRRGARRHRWPVVVPFFAFLAVCFGLPAGTMVYGAFTVLDPESGASRFSTENVSGSLSGAYATGLTGSVELSLFTALLATVIGTLIAQAVVTSPRPVLRGIVVSASGVLANFSGAPLAFAFIATLGTTGTVTQLFHLDRTGFSLYSFTGLVLAYLYFMVPLMVVTVLPALDGLRSQWQEAAASCGATRGQYWRHVGIPVLTPSLLGGAVLMFGTAFASHATAAVMVGSSQPLITIQIANALNGNVLVGQENLALAMSLNMVVIALLVMAVQIPLQRRSARWLG
>NZ_CP029361.1|WP_044376892.1|4229845_4230994_+|extracellular-solute-binding-protein
MKAHHPRRVLTAAALAGLTALVATGCGSAPDNAGGQNSKAAKAESAADLGGMEKLVAAAEKEGKLNVYALAPDWANYGEMIAAFEKKYAIEVNNEDPGGSSQGALNAAAKRKGQARAVDALDLGTSYMQDAKKQGLLAPYRVAGWDAIPDAQKQPDASFMNNYGGYISIGCDAKAVKNCPETFKDLLKPEYRNKVALNGDPTESSSALAAVVAASLASGGSLDDAQPGLDFFQQLKKKGNFVPAKSTLATIQQGETPISIDWDYLNLGYGEKLKPKGVDWQVAVPADGLYSRYYNQGVNKHAPHPAAARLWLEFVYSPEGQNIWLKGFSRPALLDAMKKDGTADKAAVAAIPEVDGVPEEPTVEQEAKAKETVVQGWGKAVS
>NZ_CP029361.1|WP_030803957.1|4228777_4229518_-|GntR-family-transcriptional-regulator
MTRRHQQIAEELRRAIADGTHPVGSELPSESELALVHGVSRGTLRQAFGTLQSEGLIGSRQGARRTVLSTTPSQSFTELRSFAQWARAGDRAPGGLVLRSHRARATEAQASQLQLVPGEMVLNVLRLRTLDGEAALLERTVYAGWAAAAVEALPDDCESVTQSLYETAGVVMSHGEHHLDAVAAGTTDARELGVRRGSPLLRVRRTTTTSEGRPVETSDDRYRPGSVVFTVRNSVQANPLVRTAAD
>NZ_CP029361.1|WP_032793850.1|4228010_4228661_-|HAD-family-phosphatase
MPPLPRPAALLCDMDGTLVDTEHAWLDTVAGFLRTQGSPAGATTLAPFAGAALADAADRLVRDGLTALSPEETLARLDQEFTARVAAGVAVQPGALRLLDRARALGVPTALVTASERHVADLVLDTLGRHRFDTSVASGETTRGKPHPDPYLAAAAALGVAPQDCLAVEDTPTGASAALAAGCRLLAVPSVPGIEPGPRTVLVASLTEADLVDAVG
>NZ_CP029361.1|WP_044376895.1|4227162_4227837_-|hypothetical-protein
MAEHDTNAPPLFELGDVSPAPPTAPAIWTLCDREARATVNGLGLPYGRKSRKITPPRVEFSRRDYLRGVIDADGSVGHTGQGLPFVSLTTASAPVGAYLCRYAKAVTGSARQIGRNARDGIYNVVYTKEAAVRLAGHLYYPGCLSLARKQTSATALASWERPADMPVRSPGRRWKPWEDRALLAHDDAASAAAELGRSAASCSVRLWRLKTGKVRRPEDGPADT
>NZ_CP029361.1|WP_030803971.1|4225920_4227114_+|RtcB-family-protein
MSYVEVPGAKVPIRMWTDPASVEDVAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVIAMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHGDAVDPGRLHGFPTAGWDDFWGRFGGIAEAVKFRQERATKQMGTLGSGNHMIEFCLDSGGAVWLMLHSGSRNIGKELAEHHIGIAQKLPHNQGLVDRDLAVFVSDTPQMADYRNDLYWAQEYAKYNRAIMMALFKDVVRREFKKAKPVFDQEISCHHNYVAEERYDGADLLVTRKGAIRAGSGEYGIIPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTVRDLEEQTRGVECRKDSGVLDEIPAAYKPIDQVMEQQRDLVEVVAKLKQVICIKG
>NZ_CP029361.1|WP_030803927.1|4235898_4236606_+|AAA-family-ATPase
MIVERAYAHVYDPDPDAWPWTVPGVRQFLAEGLRFRAPVTFLVGENGSGKSTLVEAMAEGFGLDSYGGSADWKYATSRGKSVLGERVRFDSAPRGRRMIGSRAARKGFFLRAETALDALERESLDPDSRSHGEGFLAAFREKFTVPGLYVLDEPEAALSFASCLELLGHLDQLVKAGGQVVCATHSPLLTALPGADIVQLGEGGMERVRWADLELVDHWRRYLADPQAYLRHILG
>NZ_CP029361.1|WP_006125428.1|4236618_4237353_-|hypothetical-protein
MNGPEITLEVAPELRLFVPHDRRGGPTPLVTDGSSTLGHVIESLGVPLTEAGTLLVNGAPVARSHVPGPGEHVDVRAVERPQRVPGAPLRFLLDVHLGTLARRLRLLGVDAAYESEDIGDPALAALSARERRVLLSRDRGLLRRREIWAGAYVYSDRPKEQLRDVLGRFAPALDPWSRCTACNGTLAGAAKDSVSGLLEHGTQEAYDVFAQCTECSRVYWRGAHHGHLETIVSEAVREFGGTPA
>NZ_CP029361.1|WP_044376885.1|4237440_4238262_-|AraC-family-transcriptional-regulator
MAAGPRRDTRGIVDAPDLFAHVRFRRREPAAALRPYLEHYWLIDWDLAEPYAAHVVPHPSVNLVCQRYEAGDSPRERSGYAEVAGVDPGLFTRKLAGRGRVCGVQFRPGGFRPFAPGHPVSAWTGLHADAAEVLRLPPPLDAVLGPDDEDARVAALDAFLLALQPRPDPRAALAMAAVDRVRTDRTVRRVDGLARDTGLSARSLQRLFSAYVGVGPKWVILRYRIHEALEAAESGPEVDWARLAADLGYSDQAHLVRDFTATVGVPPTAFAPH
>NZ_CP029361.1|WP_044376884.1|4238358_4238955_+|TIGR03086-family-protein
MTQTIGELLETAADRALPVVRGIDDGQLGGPTPCAEYDVRALLNHLFLVVVNFQALAAREDVDFTQEPDFVADGDWRGRFGDETARLVEAWSVPGVEEGTTGQMGLPARTVGLMVLGDLTVHAWDLARATGTDFVPERSVLDEVGPGLAAMAPQAREMKVFGEPFPVPGSSTAFERLLAVTGRDPGWTPGGTAGATGS
>NZ_CP029361.1|WP_044376883.1|4238869_4239211_-|hypothetical-protein
MGDVLLALSIPVLVFGGGIYAACDCWWRRRHPAPPSPYTHRAARLAEQDMLLLAEEIVDGAYAAFGPFYDAPEPGPAEPPTEPAALSSRSPRPSRPASTPDRAPSPPAAVQKP
>NZ_CP029361.1|WP_073780093.1|4239391_4239976_-|hypothetical-protein
MHRGGGVGEGTDDLGPEPARRGRHRRRAERAQSRGAESTPPPGTRSGGGMGVTYKYFGAPDGATAARVPISMRPEELGGDELGMGGMFTKIKPETVAAMVLTGIQGIPLHKVPPLELVVLHPDYAVVKLPMTVVDPLRGVGEESVGAAAFIWSTVPDRGGPRDAFNVYQLLHEWQDFSHRLHDAGHQAYCLVWP
>NZ_CP029361.1|WP_078955710.1|4240308_4241580_+|glutamate-1-semialdehyde-2,1-aminomutase
MFDRASVVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHSHPEVIAAVQDAVSRGTSFGTPGEGEVALAEEIVARIEPVEQVRLVSSGTEATMSAIRLARGFTGRAKVVKFAGCYHGHVDALLAAAGSGVATFGLPDTPGVTGATAGDTVVLPYNDLDAVRAAFAAHPGEIACVITEASPGNMGVVPPADGFNAGLKELCAANGALYISDEVMTGFRTSKAGWYGVDGVRPDLMTFGKVMGGGFPAAAFGGRGDVMAHLAPAGPVYQAGTLSGNPVATAAGLAQLRLLDDAAYAKIDAVSAELRSLVGDALTKEGVAHTVSAASNMFSVFFTDRPVRDYEDAKKQDAFRFTAFFHSMLEQGVYLPPSAFESWFVSTAHDERAVERIAAALPAAARAASEATA
>NZ_CP029361.1|WP_044376880.1|4241576_4242305_+|histidine-phosphatase-family-protein
MSEKSTGSEGVDRDEQLTVVHVVRHGEVHNPDGVLYGRRPGYHLSDLGRKMADRVAEHLEKRDITHVVASPLERAQETADPIAQAHGLDLATDARLIEAANVFEGKTFGVGDGALRKPDNWKHLTNPFKPSWGEPYIEQVVRMMGAIDSARDAARGHEAVCVSHQLPIWILRSFVERRRLWHDPRKRQCTLASLTSFTYRGDTIVSVGYSEPARDLVPVHLLAGAKPVKGKAAKGQSKAFGA
>NZ_CP029361.1|WP_044376878.1|4242979_4244236_+|lipoprotein
MRDINRRGLLGAGLGAAAAIGLAGCGTSGSSGDGGPGRGGKGDSGTGGNGRGNGSPKNKVRLIGDGSTADTGKQPHQPEAPVPLEPGQKPPQFVIFSWDGAGEVGNGLFPRFLELAKEHDAAMTFFLSGIYLLPESKKSLYRPPNNPRGASDIGYLTDDHVKDTLKYVRQAWLDGHEIGTHFNGHFCGGSGSVERWTPAQWHSEINQAVSFVTEWRTNTGWENEEPLPFDYRKELVGGRTPCLLGQDNLLPTASKLGWRYDASSPGGRQTWPVKRGGVWDLPLQAMPFPGHSFEVLSMDYNILANQSQNSTKGMPSRYPGWRQQATDAYLAGFQRAYESNRAPFYIGNHFEEWNGGIYMDAVEEVIKKVADKDDVRLVSFRQYVDWLDAQDPAVLAKLRTLDVGQAPAGGWNSFFKQA
>NZ_CP029361.1|WP_030803907.1|4244303_4244906_+|TlpA-family-protein-disulfide-reductase
MSFGRASRRRFTLLAATAVAGALTLSACGDGNKAGGGGNTNFITGSGGVATVAKADRAAAPKLDGTSLEGKPLDLADYKGKVVVLNVWGSWCGPCRLEAKYFAQVSEETKAQGVQFVGINTRDPERDKAVNFEKDYGVKYPSFYDPIGKLILRFPKGTLNPQAIPSTVVIDRDGKIAARTLQALNGDELREMIDPIIAEK

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Crispr_ID: NZ_CP029361_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_8

4638229-4638324

Orphan

Consensus_repeat	Method
AGCGGGGTCCGGGGCGGAGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_8

>merge|NZ_CP029361|8|4638229-4638324|CRISPRCasFinder
AGCGGGGTCCGGGGCGGAGCCCCGAAATCCAGCGGGTCCGGCCCCCCAGCCCGTCCGGCGCTTGAGGACAAAAGCGGGGTCCGGGGCGGGGCCCCG

>NZ_CP029361|8|7|4638229-4638324|CRISPRCasFinder
AGCGGGGTCCGGGGCGGAGCCCCG	AAATCCAGCGGGTCCGGCCCCCCAGCCCGTCCGGCGCTTGAGGACAAA
AGCGGGGTCCGGGGCGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_030802960.1\|4646347_4647355_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|376676
NZ_CP029361.1\|WP_073779797.1\|4636163_4636544_+\|DUF3499-domain-containing-protein	unknown	unknown	gnl\|CDD\|378788
NZ_CP029361.1\|WP_044373277.1\|4624416_4625460_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP029361.1\|WP_030802988.1\|4627215_4628172_-\|2-phospho-L-lactate-transferase	unknown	unknown	gnl\|CDD\|237443
NZ_CP029361.1\|WP_073779769.1\|4635349_4635778_-\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240574
NZ_CP029361.1\|WP_044373275.1\|4625791_4627078_-\|coenzyme-F420-0:L-glutamate-ligase	unknown	unknown	gnl\|CDD\|183957
NZ_CP029361.1\|WP_030802969.1\|4642890_4644348_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NZ_CP029361.1\|WP_030802966.1\|4644552_4645215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044374725.1\|4636612_4637980_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|236557
NZ_CP029361.1\|WP_044374723.1\|4639012_4640149_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|378434
NZ_CP029361.1\|WP_003968734.1\|4638670_4638853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP029361.1\|WP_044374719.1\|4645211_4646228_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|224628
NZ_CP029361.1\|WP_044374721.1\|4640363_4641539_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|185085
NZ_CP029361.1\|WP_086670106.1\|4654630_4655602_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP029361.1\|WP_030710241.1\|4628185_4628686_-\|cysteine-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|380416
NZ_CP029361.1\|WP_044374726.1\|4633746_4635285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_104011599.1\|4629925_4633750_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224137
NZ_CP029361.1\|WP_030802376.1\|4653306_4654620_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP029361.1\|WP_030802972.1\|4641626_4642613_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP029361.1\|WP_003968728.1\|4629356_4629620_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_030802960.1\|4646347_4647355_+\|stage-II-sporulation-protein-M	gnl\|CDD\|376676	pfam01944, SpoIIM, Stage II sporulation protein M. SpoIIM is on e of four stage II sporulation proteins that is necessary for the forespore inside the mother-cell to be properly internalized through the breakdown of peptidoglycans trapped between the membranes of the septum separating the forespore and the mother-cell. The four proteins working in sequence are SpoIIB, pfam05036, SpoIIM, SpoIIP, pfam07454, and finally SpoIID, pfam08486. D, M and P are in a complex with each other and the complex assembles in a hierarchical manner such that M, which serves as a membrane anchor, recruits P to the septum and P, in turn, recruits D to the septum.	3.33927e-40
NZ_CP029361.1\|WP_073779797.1\|4636163_4636544_+\|DUF3499-domain-containing-protein	gnl\|CDD\|378788	pfam12005, DUF3499, Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.	1.92889e-59
NZ_CP029361.1\|WP_086670106.1\|4654630_4655602_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.54057e-103
NZ_CP029361.1\|WP_044373277.1\|4624416_4625460_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.91976e-28
NZ_CP029361.1\|WP_030802988.1\|4627215_4628172_-\|2-phospho-L-lactate-transferase	gnl\|CDD\|237443	PRK13606, PRK13606, LPPG:FO 2-phospho-L-lactate transferase; Provisional.	2.67385e-174
NZ_CP029361.1\|WP_073779769.1\|4635349_4635778_-\|metallopeptidase-family-protein	gnl\|CDD\|240574	cd12954, MMP_TTHA0227_like_1, Minimal MMP-like domain found in a group of hypothetical proteins from alphaproteobacteria and actinobacteria. The subfamily includes some uncharacterized bacterial proteins which show high sequence similarity with Thermus thermophilus hypothetical protein TTHA0227. However, they do not contain the conserved HExxH (x could be any amino acid) motif. They may not have any zinc metallo-peptidase activity.	8.92067e-26
NZ_CP029361.1\|WP_044373275.1\|4625791_4627078_-\|coenzyme-F420-0:L-glutamate-ligase	gnl\|CDD\|183957	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional.	0
NZ_CP029361.1\|WP_030802969.1\|4642890_4644348_+\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_CP029361.1\|WP_044374725.1\|4636612_4637980_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|236557	PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.	0
NZ_CP029361.1\|WP_044374723.1\|4639012_4640149_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|378434	pfam10432, bact-PGI_C, Bacterial phospho-glucose isomerase C-terminal SIS domain. This is the C-terminal SIS domain of a bacterial phospho-glucose isomerase EC:5.3.1.9 protein which is similar to eukaryote homologs to the extent that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This domain contributes a good proportion of the active catalytic site residues. This PGI uses the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate. It is associated with family SIS, pfam01380.	1.95881e-15
NZ_CP029361.1\|WP_044374721.1\|4640363_4641539_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|185085	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.	2.90072e-113
NZ_CP029361.1\|WP_003968734.1\|4638670_4638853_+\|hypothetical-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.05558e-13
NZ_CP029361.1\|WP_030710241.1\|4628185_4628686_-\|cysteine-dioxygenase-family-protein	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.45124e-25
NZ_CP029361.1\|WP_044374719.1\|4645211_4646228_-\|RDD-family-protein	gnl\|CDD\|224628	COG1714, COG1714, Predicted membrane protein/domain [Function unknown].	1.49141e-17
NZ_CP029361.1\|WP_104011599.1\|4629925_4633750_+\|glycosyltransferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	3.99782e-33
NZ_CP029361.1\|WP_030802376.1\|4653306_4654620_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	3.02867e-45
NZ_CP029361.1\|WP_030802972.1\|4641626_4642613_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.39e-39
NZ_CP029361.1\|WP_003968728.1\|4629356_4629620_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.17122e-28

>NZ_CP029361.1|WP_044374725.1|4636612_4637980_+|phosphomannomutase/phosphoglucomutase
MVADLSQLVKAYDVRGVVPDQWDESLAELFGSAFVQVTAADAIVIGHDMRPTSPGLSRAFARGAAARGADVTLIGLCSTDQLYYASGALDLPGAMFTASHNPAQYNGIKMCRAGAAPVGQDTGLAEIRTLVEQWSEGAPRPAAATTPGTITERDTLTDYASHLLGLVDLTAIRPLKVVVDAGNGMGGHTVPTVFDGLPLDLVPMYFELDGTFPHHEANPLDPKNIVDLQARVLAEGADLGLAFDGDADRCFVVDERGAGVSPSAITALVAARELARNGGRGIVIHNLITSSSVPEVVRENGGTPVRTRVGHSFIKAEMAGHGAIFGGEHSAHYYFRDFWNADTGMLAALHVLAALGGQQKPLSELVAEYDRYTGSGEINSTVADQTASLTKVKKAYGTREDITFDDLDGLTVTAPDWWFNLRASNTEPLLRLNVEAGDEKTMTAVRDEVLGLIRG
>NZ_CP029361.1|WP_073779797.1|4636163_4636544_+|DUF3499-domain-containing-protein
MVSPVRRCSRTACGRPAVATLTYVYADSTAVLGPLATYAEPHCYDLCAEHSERLTAPRGWEVVRLSDGSAPAHPSGDDLEALANAVREAARPHDRGPDGGGRGRRSADPVEVARRGHLRVLRSPDS
>NZ_CP029361.1|WP_073779769.1|4635349_4635778_-|metallopeptidase-family-protein
MDSPVPPHPFEPRPRRRDRHGRGMRGPVAPPQVPLSASRGETFRDLVQDSVERLERRWPQLAEVDFVVLDVPGTPEEVVPLGSAVSAEKGRPAQIVVYRRPVEIRTKSRDERALLVHEVVVEQVAELLGLAPESVDPRYGQD
>NZ_CP029361.1|WP_044374726.1|4633746_4635285_+|hypothetical-protein
MKSTHLSLIAGAAVLAAVTGFATVTAPGAPAGSTAKSAALLPVERAGLVCPAPSNSELAETQYTAFTPAGEGGEAKGAAELKPALPVVDDEDETDPKKVKKAEEAAKKAKEKAEKPVLAVKEPGKPVVAEANGSSAPALVGTATGKLAPGWTAQQTTEVTAGGSRGLLGVTCTAPDTDFWFPGASTAKSRQDYIHLTNPDDTGAVADIELYGPEGALKSDVGDGITVPARSSVAVLLSTLTSEAVDQLTAHVTTRSGRIGAVVMSADDSAGSDWITASEDPSGTLVMPGIPADATSVQLVAFAPGEDDADVKVQLMGKNATFSPAGNATLHIKSSMTASADLKDLTRGEPGSLRLSPVRKDRATPIVAALRVVRGKGDKQEIAYIPATGPVGARATVPDNRAKGSTLSLTAPGATAKVKVTASAGSGGGEPAVETYTVKAGTTLAVTPKAPEGLKGSYALTVETTSGGPVHASRSLALASDGVQMFTVQTLPDDRGMVEVPSARQDLSVLDD
>NZ_CP029361.1|WP_104011599.1|4629925_4633750_+|glycosyltransferase
MSVHSHSAAPNAAAAAPEFPRHVVTAVLVSHDGARWLPDVLAGLLGQERPVQNVVAADTGSADDSARLVTEALGDERVLHLARRTSFGTAVDEAARTAGILTPDDLPYLKRPSGWDPQTRTWVDENYDLPELPHGEPVQWLWLLHDDCAPEPDALAAMLRVVDTDKHATIVGPKLRGWYDRKQLLEVGVSIANSGRRWTGLDRREQDQGQHDQVRTVLSVSSAGMLIRRDVYEELGGFDRRLPLMRDDVDLCWRAHLAGHRVLVAPDAVLRHAEASARERRPIDCAGRSVASPHRVDKAGAVYTMLVNARGKALPWVLLRLVVGTLLRTLAYLVGKVPGQALDEITGLLGTLLRPGRILAARRNRGKGVVDAAELRALFPPPGATVRATVDQVAGNFGGRTDSDAGGSRHGVVESGPGGDDADFLEVDQFARLKRIGRKPGPILFALLLVVSLVACRNLLSGGALAGGALLPVPAELGSLWDRYADAWHTVGTGGTQTAPPYLALLAALSALFLGSTGLAVSVLLVCSIPLAGATAYFASRPLLPSRLLRAWASVAYAFLPAATGALATGRLGTAVLLVLLPLIARAGVAAHGLRADSAAGERGSWRATWAYTLLLTVTMAFTPIVWPLAVVLGLGVLVLRRGDITAYALRFVAAVATPVLVLAPWSLSLLTNPSALLTEAGLDTGTGEASGFDLLGISPGGPGAAGGILLLGIVLAALAALLREERQFAVRTAWAVALVGFLFAAVANGSTWAGPATLVYGTALIAAALVGADGARIRVAEQSFGWRQPVAALIALAAGLAPVLAAAGWMIGGADGPLERRDPVQVPAFVAEESTTRDQPRTLILGGTSPDTVSYSLVRGSGARLGDGELTEAGGSNSHLDKVVANLVAGSGADQGGQLSGFAIRYVLVRDGAPREMSRVLDATPGLSRLSQLDGSALWRVDRQVARVMITPGSGEGEHIAVGSAAVEAHSEIPSGEAGRVLRIADAADPGWTATLDGKPLPRKTVDGWAQGFELPANGGRLDLTHDAPITHTAWIWAQIGLLVVLVVMALPGRRREIDDDLPEEALAVAAEPVDGEGRRARRLRAAAQAEAAAEEAGNDDPSRAVDPGEYIPAQQTADPYAENQQAPHDPQEATGGYAAVPEQQPVPQQYDAYAQWDGQQQPTADHYATYQQQDPYAQQHQHQHHQQQGQQSAGYQRGYGVQDPYAQQYDDQGAYNGQSAAYDNQGVYDEYGRYIGGQQHQHPYTENGEQTDPPAPGQAPWQTGNASRGESE
>NZ_CP029361.1|WP_003968728.1|4629356_4629620_+|WhiB-family-transcriptional-regulator
MTELFQQLLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALSNDERFGIWGGLSERERRRLKKAAI
>NZ_CP029361.1|WP_030710241.1|4628185_4628686_-|cysteine-dioxygenase-family-protein
MNSDSDLQIAGDILEVQHLLQPAREHPSTVSEFVGLARSIAADRARWADIVRYDSASRWYHRLHQGPGYEVWLLSWVPGQGSGRHDHGLSAGVLTVLEGELTEHTERGTRSLGAGAQRSFAPGYVHEVVNDSLEPAVSLHIYYPGLTEMPMHPSQSAPTAVGAVPA
>NZ_CP029361.1|WP_030802988.1|4627215_4628172_-|2-phospho-L-lactate-transferase
MRIVVLAGGIGGARFLRGLKQAAPDADITVIGNTGDDIHLFGLKVCPDLDTVMYTLGGGINEEQGWGRTDETFQVKEELAAYGVGPEWFGLGDRDFATHIVRTQMLGAGYPLSAVTEALCARWQPGVRLLPMSDDRVETHVAVEMDGENKAIHFQEYWVKLRASVEARAIVPVGAEQAKPAPGVLEAIGAADVIVFPPSNPVVSVGTILAVPGIREAIAEAGVPVVGLSPIVGDAPVRGMADKVLAAVGVESTASAVARHYGSGLLDGWLVDTVDAGAVDEVEAAGIRCRAVPLMMTDVDATAEMARQALALAEEVRA
>NZ_CP029361.1|WP_044373275.1|4625791_4627078_-|coenzyme-F420-0:L-glutamate-ligase
MWAVGGMPEVRDGDDLAKLIAAAEPGMADGDVLLVTSKIVSKAEGRIVEAADREAAIDAETVRVVARRGTLRIVENRQGLVMAAAGVDASNTPAGTVLLLPEDPDASARTIRDGLRDILGVEVGVVVTDTFGRPWRNGLTDVAIGAAGVRVLDDLRGGTDAYGNPLSATVVATADELASAGDLVKGKAEGLPVAVVRGLPHVVASAGGDEPGARALVRSAADDMFRLGTSEAVREAVTLRRTVREFSDEPVDPGAVRRAVAAAVTAPAPHHTTPWRFVLLESAESRTRLLDAMREAWIEDLRRDGKSEESIAKRVRRGDVLRNAPYLVVPCLVMDGSHTYGDERRDTAEREMFVVAAGAGVQNFLVALAGERLGSAWVSSTMFCRSVVREVLSLPSSWDPLGAVAVGHGVGVPRERAVRSAEAFLTVR
>NZ_CP029361.1|WP_044373277.1|4624416_4625460_+|DNA-3-methyladenine-glycosylase-2-family-protein
MAGRFAPRTTRAALPHQTVADRAAASGAAASRRQSASAPASPEGPPLTREWTPPAPLDLRLVLGPLRRGPADPTFRMTGDGTFWRATRTPAGPGTLRIARRGDRIAAAAWGPGADWLLEGLPALLGAEDDPDAFVPRHRLLALTRHRRPGLRLLRTGLVLESLIPSVLEQKVTTDEAYRAWRHLVRRFGTPAPGPTADLGLHVMPDPRGWAMIPSWEWHKANVDAKRSSTILRAVRVARRLEEAATMPLPEAQTRLQLIPGIGPWTAAETLQRSNGAADAVTVGDLHLPGIVGHALADNRDADDEEMLRLLTPYEGQRHRATRLILLSGRIPARRAPRMQPGNIVNL
>NZ_CP029361.1|WP_003968734.1|4638670_4638853_+|hypothetical-protein
MALEAGLLEILACPACHSPLDDRSAADSPELVCTGDDCGLAYPVRDGIPVLLVDEARRPA
>NZ_CP029361.1|WP_044374723.1|4639012_4640149_+|mannose-6-phosphate-isomerase
MLDESLLDAPEALARADRRDLLRGAAEAGARVRTAARHAAEAGIGGLTPEGRPRAVLFAGPGTAASGVADLIGALAGAAAPVTRIHPTGVAPAPGALRWALPGWAGSVDLLLIATADGSEPGLALLAEQAYRRGCTVVAVAPTRSPLREAVDGVHGLVVPMAAAPHGEYDAETSAAGPGTLWALLTPLLALLDRVGLVTATPEDLQKVADRLDRTAERCGPAIATYSNPAKTLAAELADSLPLLWTEGDAAGPVGRRFAAVLSELAGRPALAAQLPEALPSHGTLLAGDFAAGADPDDFFRDRVEEGETLRARVVLLRDRPTGGLSAYPAARELALGHDTPVSELEPEEGGELEAVAELLAITDFAAVYLSLASAPQP
>NZ_CP029361.1|WP_044374721.1|4640363_4641539_+|mannose-6-phosphate-isomerase,-class-I
MDRLSNTVRPYAWGSTTAIPALLGIAPTGEPQAEMWMGAHPGAPSRITRTTASGEIELALTEAIDADPEGELGAPTVARFGPRLPFLLKLLAAGAPLSVQVHPDLEQAREGYADEEARGVPIDAPHRTYKDANHKPELICALTPFAGLCGFRPPTEAADAMEALGVDSLKPYVDLLRAHPEEAALREVLTAILGADPAEMTETVTEAAAAAERLGGAHAPYARIAHHFPGDPGVLAAMLLNYVELQPGEALFLGAGVPHAYLDGLGVEIMANSDNVLRCGLTPKHIDVPELLRIVRFEATEPGVLRPEAAPSGEELYETPVDEFALSRYTLASGAAPTDLTAPTPQILLCTAGTVTVGEIALGPGESAYVPADERVEATGPGTLFRATVAA
>NZ_CP029361.1|WP_030802972.1|4641626_4642613_+|cation-diffusion-facilitator-family-transporter
MSASGGTKAIVAALAANLSIAVAKFVAFLFSGSSSMLAESVHSLADSGNQGLLLLGGKRAKREATPEHPFGYGRERYIYAFLVSIVLFSVGGMFAVYEGYEKIKHPHEIEAWYWPVGVLVFAIIAEIFSFRTAIKESNLTRGDRSWTEFVRRSKAPELPVVLLEDLGALVGLILALGGVGLALATGNGVWDGIGTLCIGILLILIAIVLAVETKSLLLGESAGIEDVQKIKAAVVDGDTVTRIIHMRTLHLGPEELLVAAKIAVRHDETAAEVAEAINAAENRIRDAVPIARVIYLEPDIYNAEAAATGTNPGKTLDGPTEAPSDSGH
>NZ_CP029361.1|WP_030802969.1|4642890_4644348_+|adenosylhomocysteinase
MTTTTNRQDFKVADLSLAPFGRKEITLAEHEMPGLMSIRKEFAATQPLAGARITGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPEAPAGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMILDDGGDATLLVHKGVEFEKAGAAPDPSTADSEEYAHILTLLNRTLGEAPQKWTQLASEIRGVTEETTTGVHRLYEMHRDGSLLFPAINVNDAVTKSKFDNKYGCRHSLIDGINRATDVLIGGKTAVVFGYGDVGKGCAESLRGQGARVIITEIDPICALQAAMDGYQVATLDDVVETADIFITTTGNKDIIMAKDMARMKHQAIVGNIGHFDNEIDMAGLARIDGIVKDEVKPQVHTWTFSDGKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKPQEYPTDVYVLPKHLDEKVARLHLDALGVKLTTLRPEQAAYIGVEVEGPYKPDHYRY
>NZ_CP029361.1|WP_030802966.1|4644552_4645215_+|hypothetical-protein
MPRGRYSLHDLHDHTPLGEEHFHCAPGPSGWRYVSQTTSPSGDHLGSVDLALDELGRPIRLELHAASWQVRGAALEGVTWVRTDPTGSHATEGNVRAHAFAGTSPAFLIAMTRLLRLTPASPTTRVRVVTFTDPVLAPRSVDQSWALMNSEAHPTDNGPLIVDEYQVSALDTGEQHTVHIAGDVVLAAPGIELEHLETPPSPRAYGPDLDKPDTDGPDAD
>NZ_CP029361.1|WP_044374719.1|4645211_4646228_-|RDD-family-protein
MSELVTGDAVVLGLRPARLPSRALASAIDLAVTFVVFIVVSVVLGIASAALDEAAVAAIGVASFLLVLIGGPVAVETLSRGRSLGKLACGLRVVRDDGGPIRFRHALVRGAMGLVEILLTFGAVASIASLVSARGRRIGDVFAGTLVIRERVAATGRSVAVPPPPPWLVGRFAELDLSGVPDELWSAIRQYLTRMQQLDPGVGRSIAERLAGELVARTGAAAPQGVPAAAFLAAVVHERQSRDARRVFAGPRAGGYVEAPVARMTAGAGGLGAGAGAGAAAGARGSGPVGTGGSVGGPGSIGGGSAGAGTRSGGGGGGAGDDEQRRGGASSAGFAPPG
>NZ_CP029361.1|WP_030802960.1|4646347_4647355_+|stage-II-sporulation-protein-M
MDLDVFVTAHRTEWDRLEHLLRRGRHLTGAEADELVVLYQRTATHLSLIQSSSSDPLLTGRLTQLVARARSTVTGTRKASWRDAARFLTAGFPAAVYRSRHWWVPTAVLSTVVAALLGWWIGTHPEVQAAIAAPEDLRAMTRPGGEYETYYSSHPAASFAAQVWTNNAQAAALCLVLGAFLCIPVIWILFLNMLNLGVGIGLMSSAGRLDVFLGLVLPHGLLELTAVFVAAGTGLRLGWAVIDPGPLSRRTALAQQGRAALGMAIGLALVLFVSGLIEGFVTPSGLPTWARITIGVVAELAFLAYVYILGGRAARAGDTGDLASVERSAELPTAA
>NZ_CP029361.1|WP_030802376.1|4653306_4654620_-|DUF58-domain-containing-protein
MALTGRTALLAALGSLPVGILAPSWTGMLAVNAPLSLAILCDYALAAPVRTLRFTRSGDTTVRLGDAAEVQLTVTNASRRRLRAQLRDAWPPSSWASGTERRSSRHTLTVPAGEQRRLVTVLRPTRRGDRQAERITVRSYGPLGLAARQGQHRAPWTVRVLPPFTSRKHLPSRLARLRELDGRTSVLTRGEGTEFDSLRAYVPGDDTRSIDWRATARQSAVAVRTWRPERDRHILIVLDTGRTSAGRVGDVPRLDASMDATLLLTALAMRAGDRVSLLAYDRQVRARVQGRTASGNVLATVINTLATLEPELIETDARGLSNAALTDAPRGSLIVLLTTLEAAPIEEGLLPVLPQLTQRHTVLVAAVSDPRIEEMANARGTVDSVYDAAAAGQAQADRRRTADRLRRHGVVVVDATPDHLAPALADTYLALKAAGRL
>NZ_CP029361.1|WP_086670106.1|4654630_4655602_-|MoxR-family-ATPase
MPTETEPSDSARASLEALRSEIAKAVVGQDPAVTGLVVALLCRGHVLLEGVPGVAKTLLVRALAASLELNTKRVQFTPDLMPSDVTGSLVYDARTAEFSFQPGPVFTNLLIADEINRTPPKTQSSLLEAMEERQVTVDGTPRPLPEPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPSRQDEIDVLTRHADGFNPRDLKAAGIKPVAGPADLEAAREAVAKTTVSPEIAGYVVDICRATRDSPSLALGVSPRGATALLSTARAWAWLTGRDYVIPDDVKALALPTLRHRIQLRPEAEMEGVTPDSVIASVLAHVPVPR

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Crispr_ID: NZ_CP029361_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_9

5395028-5395202

Orphan

Consensus_repeat	Method
GGAGCAGGAGGCCAAGGAGGAG	CRT

3 spacers

The CRISPR arrays of NZ_CP029361_9

>merge|NZ_CP029361|9|5395028-5395202|CRT
GGAGCAGGAGGCCAAGGAGGCCCAGGCCAGGGCCGAACAGGAGGCCAAGGAGGCCGAGGCCAAGGCGGAGCAGGAGGCCAAGGAGAAGGAGGCGGAGCAGAAGCAGGCGGAGCAGGAGGCCAAGCAGGAGGCGAAGGAAGCCGAGGCCAAGGCCGAGCAGGAGGCCAAGGAGAAG

>NZ_CP029361|9|2|5395028-5395202|CRT
GGAGCAGGAGGCCAAGGAGGCC	CAGGCCAGGGCCGAACAGGAGGCCAA
GGAGGCCGAGGCCAAGGCGGAG	CAGGAGGCCAAGGAGAAGGAGGCGGAGCAGAAGCAGGC
GGAGCAGGAGGCCAAGCAGGAG	GCGAAGGAAGCCGAGGCCAAGGC
CGAGCAGGAGGCCAAGGAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_044373360.1\|5388235_5389636_+\|type-VII-secretion-integral-membrane-protein-EccD	unknown	unknown	gnl\|CDD\|274855
NZ_CP029361.1\|WP_044373367.1\|5378233_5378650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_104011613.1\|5397686_5437901_+\|lonely-Cys-domain-containing-protein	unknown	unknown	gnl\|CDD\|380151
NZ_CP029361.1\|WP_078955583.1\|5440106_5440751_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP029361.1\|WP_030801358.1\|5376744_5377404_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP029361.1\|WP_030801330.1\|5397320_5397686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030806652.1\|5437917_5438676_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP029361.1\|WP_044373358.1\|5389657_5391106_+\|type-VII-secretion-protein-EccB	unknown	unknown	gnl\|CDD\|368288
NZ_CP029361.1\|WP_044373483.1\|5444818_5446090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366226
NZ_CP029361.1\|WP_086671637.1\|5382294_5383479_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|274856
NZ_CP029361.1\|WP_030801338.1\|5392472_5392973_+\|type-VII-secretion-system-associated-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044373454.1\|5438720_5439548_+\|type-VII-secretion-system-associated-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_010064394.1\|5391963_5392293_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NZ_CP029361.1\|WP_044373365.1\|5378734_5382043_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|163057
NZ_CP029361.1\|WP_073777344.1\|5396854_5397289_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP029361.1\|WP_030806630.1\|5447900_5448098_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP029361.1\|WP_044373456.1\|5446612_5447884_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|372371
NZ_CP029361.1\|WP_104011614.1\|5440747_5444656_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP029361.1\|WP_010064393.1\|5391519_5391876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044373370.1\|5377413_5378121_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378981

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_044373360.1\|5388235_5389636_+\|type-VII-secretion-integral-membrane-protein-EccD	gnl\|CDD\|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	1.26195e-41
NZ_CP029361.1\|WP_104011613.1\|5397686_5437901_+\|lonely-Cys-domain-containing-protein	gnl\|CDD\|380151	NF012197, lonely_Cys, lonely Cys domain-containing protein. This model describes an unusual domain, over 700 amino acids long, that is largely restricted to the Streptomyces (prodigious producers of natural products) and that may occur ten or more times in giant proteins. The most striking feature is an extremely low cysteine composition, one residue per domain, and that in an essentially invariant position.	0
NZ_CP029361.1\|WP_078955583.1\|5440106_5440751_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.000132794
NZ_CP029361.1\|WP_030801358.1\|5376744_5377404_+\|cupin-domain-containing-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	7.5564e-47
NZ_CP029361.1\|WP_073777344.1\|5396854_5397289_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	1.72564e-08
NZ_CP029361.1\|WP_044373358.1\|5389657_5391106_+\|type-VII-secretion-protein-EccB	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	4.5533e-126
NZ_CP029361.1\|WP_044373483.1\|5444818_5446090_+\|hypothetical-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.04702e-19
NZ_CP029361.1\|WP_086671637.1\|5382294_5383479_+\|S8-family-serine-peptidase	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	1.9757e-49
NZ_CP029361.1\|WP_010064394.1\|5391963_5392293_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.03972e-11
NZ_CP029361.1\|WP_044373370.1\|5377413_5378121_-\|hypothetical-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	0.00970163
NZ_CP029361.1\|WP_030806652.1\|5437917_5438676_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00491802
NZ_CP029361.1\|WP_030806630.1\|5447900_5448098_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	7.00984e-24
NZ_CP029361.1\|WP_044373456.1\|5446612_5447884_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|372371	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase. These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of aminotransferases acts as dimers in a head-to-tail configuration.	0
NZ_CP029361.1\|WP_104011614.1\|5440747_5444656_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	1.16288e-14
NZ_CP029361.1\|WP_044373365.1\|5378734_5382043_-\|AAA-family-ATPase	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	1.24451e-84

>NZ_CP029361.1|WP_030801338.1|5392472_5392973_+|type-VII-secretion-system-associated-protein
MAEAPALNLNKAWLQSFLDNDLVPFLAEIKKMREDGTTTDGTTVPGIPTLQGGEDGSATAAGFHDGQKKPIAIGTMAGDENGRTNGGYLVKCLNGLVDQLDDILKLQVELFEQIEEDLEDTIEELFKTQDGNLEKIDGKDMIDFFEGVDEVLSESAGGGSDNDEDD
>NZ_CP029361.1|WP_010064394.1|5391963_5392293_+|WXG100-family-type-VII-secretion-target
MTPPLDFTDGQIYVDYGHMENAADDMVQQTKAIDSILTNLEAELQELQRSWEGEDKAVYAEKQASWNNAVEEMKRILAEHSALLTDVSGSYKYSENSLKSLWESVRIGS
>NZ_CP029361.1|WP_010064393.1|5391519_5391876_+|hypothetical-protein
MAGTGAQQSLASSTQNGVTALEMAFTGVQNSRQDVENMKHNLASGYAGSDGGAFQKLLDRWDQQAEIISSNLRDMITTLEETMRAQGIQQNNSNDSIQQAFNRSEEIFNALAGSTAGR
>NZ_CP029361.1|WP_044373358.1|5389657_5391106_+|type-VII-secretion-protein-EccB
MQSKRDQVQAHMFVMGRLTSGMLRADPDAPESPQGRTNRGVVIGIVIAVLLSAGSFVLGLLKPGTKDSWRAAGTLVVNKDTGSRYLYLDGRLRPVRNYASARLLAGADMKAVAVGSKSLNGTPHGAPIGISGAPDALPGSADLDTGPWQVCSGSGTGRTGTTVAVGLPADATGLPTDQAMLVTGPDKADYLVWRGSKLLIDEDTRAREALGYASVSRLPVSAAFLNALPSGPDLRPPNVPGKGRKGPALGGGESRIGQVFRVTVPGSADRYYLLRQEGLTPLTATGAALVLGDPETREKVYGGGAAKVVTLGADALSGRLAPGAQGGADEANLPSEPPEAVALGEDRTVCIRVQPSERGPRISVALTGTGSLGPAAQAPPEGLTPACMPVGTISVRPGGGSLVRALGASGSTVGTTVYLVTDTGMKYRVGTADGLAALGYSEGQARGLPAPLLAMLPTGPDLTKEAAALGRNTNTTPRCART
>NZ_CP029361.1|WP_044373360.1|5388235_5389636_+|type-VII-secretion-integral-membrane-protein-EccD
MTDTQVAELCRLTVRAPAKSIDLAVPADVPVADLLPAVLGYAGDNLEEAGIDHGGWVLQRLGGEPLDEELTLDSYGLRDGDTLYLRPRAEALPEVHLDDLVDGIATTMRDHPFGWTPKVSRWVLLGIVVAILAGGVLVIAWPGGSSLSRSVFATAAGLLLLAGAGAASRAVGDAGAGAALGFMVGPYLALAGWLLPGGELGGQHAYETLGARLLAASAAMAGGAVLALAVVAAFAALFLSVAVVSLFAAIAAVLLLTTDLAPVHAAGILAVLAVILGAFVPSLAFRMSGMRMPPLPTNAQQLQEGIEPHAASAVSARAILADGWMTSLYGAVGLVGAACVAVLARERELAEIIMTVALCLLLVLHARGLGNIWQRMSLVVPGVFGLLLLVLVAAPAASPGSRLVTAAGLLAAAAAVAIAAWTVPGRRLVPYWGRAGEVLHSALAIAVLPLALWVLGVYGALRAING
>NZ_CP029361.1|WP_086671637.1|5382294_5383479_+|S8-family-serine-peptidase
MPPAGFRRRPRATAVAAALSLTVIPTVLVAAGTTPAAADSVGLPVVRSVLAEDDTCVEASEVKARSEPWTMGALGAARARPLSQGAGQTVAVVDTGVGESAPALAGRVTAIGDAGKDCVGHGTFAAGLIAATPGAAGGPAGLAPEARILAVRGADERGGSTVAQVAAGIRTAADEGASVIYVAAALAAGKAELTKAVAYASEKDALVVAPLAPDALPRDAKPAAWYWPAAAPGAIGVTDYGPDGQRPANAPVVGGADLAAPGDAVVSIGPEGSGHFIGYGASFAAAHVAGAAAQVRARHPELSAADTERRLTEAAYPASPPRLDPYAALTAVLTDEKGAVPRTERAEVPPPPAAEPRTRALIAAGVGGGVVLLVAAGAVVIPRGRARNWRPAGS
>NZ_CP029361.1|WP_044373365.1|5378734_5382043_-|AAA-family-ATPase
MSRQLLRVGSDQPDSFRTIGEALDKARTGAVIRVSPGRYPENLTVRTRVTIVADGEPGSAEICPRRGTAVILVADAVMLTDLTLRGGSEDLPVVDAPRGQVAMDGCTIVGSGWTAVLARESGSVAMRDCRVSNPKGAGIVDSAPTGSVIAGCRISNLGTSGVVIGAEARTTVRDCRILDARANGVLTSDEAQGLVEDCDISGTDKPSIALEGRSGTRVLRTTVHDTSVGVYITSSARPSLERVSVSDTSGPGIMLAVSADPEFLDCRTSRTKGSGLVVSERSRGTFQHCEFDTAAAPAVRVIDSSSPTLIGCAVRDCADTNGAVLLEEDSTAEFDELLVSDAAGVAVRIRTGADPLLRRVRITSPGGNGVEVAEDGRGRLEHCEIDRAGGSAVRIASGGNPDIRDTVMRAAEDTTISVGTEGRGTVRDCAVEFAAAGGITVDNGGDLSVLRVHITDSGAHGVLLANGSRATLTSSQVIGSVGDGIRIDSAEPVTVADCTVRDNRGAGLRQTRINERLTIEGLNSAGNGAPDAWGDTLPPDVAGGGPDAEKKGPEGPLEELESLVGLAEVKSQVRNLVNLNQLNQRRAQLGMPVAQVSRHLVFSGPPGTGKTTVARLYGGILADLGVLRSGHLVEVSRADLVAQVIGGTAIKTTEAFNEALGGVLFIDEAYTLLSDSKGSGADFGREAVDTLLKLMEDHRDDVAVIAAGYTGEMESFLSSNPGLASRFTRTIDFANYSVDELVTITENMCLGHRYELAAETREALARHYERMPRDATFGNGRAARRVFEEMVDRQASRFASMKNPAESDLALLLPEDVAPDTGAPADDGPGSEELLAQLHSMIGLTAVKNEVTALVNLLTATKQRKAAGLPTPKISNHLIFSGPPGTGKTTIARLYADLLRSLGVLPKGQLVEVARADLVGRYVGHTAQLTKDAFERAMGGVLFVDEAYTLTPEGATSDFGREAVDTLLKLMEDHRDEVVVIAAGYTREMRRFLDSNPGLASRFSRTVEFESYSTDDLLQILSQQATGYGYDCSPETTAALYAYVDSLPRDHAFGNARTARQILEAMMTRQAGRLGAMSAPSLDDLRLLLPDDLPPEVAAVQR
>NZ_CP029361.1|WP_044373367.1|5378233_5378650_-|hypothetical-protein
MRSQDYDLEFRERAARIRDWGTILLVVAGLLWGWCAVLLMTEYTIETRTGFEKECAARLFTDRGTANEGVYAGDYCADERDWPEALVVLGLSIPVALVGTALFTTGSVTRRMSSHAQAMRELDRLAERRAKESEQSQG
>NZ_CP029361.1|WP_044373370.1|5377413_5378121_-|hypothetical-protein
MSGEGPRTDRLGILLEQFDQAREMAEVRLHGLGDEEYLWEPAPGSWSIRRREEATTPKAYGPGAWVIDKGAPEIPANEYAEVARQAADGMSVAKIAEDWSVSVERVEEVLAFTGEPEPDVVPITTIAWRLGHLHSDFEGRWEWTFGERRQDPHLLVDFTPSASLALERFWATLDRHRASIGALTEEQLDTVGLSQYPHGSDPDDAYIGTLANGNLELIHHMAEIALLRDLWRARR
>NZ_CP029361.1|WP_030801358.1|5376744_5377404_+|cupin-domain-containing-protein
MISVHRSDDRYRGGDEAAGIDTRHALSFGPFYDPDNLRFGPILACNEERLAPGAGFEEHPHSHTEIVTWVVEGELTHRDSAGHSTVVRAGDVAHLSAASGVRHVERNDGTDPLAFLQMWLAPLEPGGEPSYTVVPGIADSTPYALPGAGAMLHVRRLTEDERTAVPDAVRLYVHVVRGRVGLGGEELGPGDAARITDARGLAAVAVAGPAELLVWELAG
>NZ_CP029361.1|WP_073777344.1|5396854_5397289_+|YbaB/EbfC-family-nucleoid-associated-protein
MSDSMEKKLAEAMAELTAVQEAVARAEGELGQSSTTARSRDRAVEVTVGPQGELTGLKFPDNRHRSMTGPQLAASIMEAVQEGRSEMARKVMDVFEPLTRTTGRATGIRGIDIDWDRAFGSALDDGHGGGRRSSARLHDEIHED
>NZ_CP029361.1|WP_030801330.1|5397320_5397686_+|hypothetical-protein
MAVGKFTANPGELRRASEMMEQLPAQAAKIGDNFISDIQNYRGWAGYSDDFALEVLPKYDANNQSCLDLVRALSSAFTELGQAVWANGQHIEGVSNYARDEIDRQMSSLDTPGDSSQGGRH
>NZ_CP029361.1|WP_104011613.1|5397686_5437901_+|lonely-Cys-domain-containing-protein
MEEIDFPPDVRTMLWILLGEMPLQARENLAWESRELYLALQRGLMDLRAASRETIQMVEAALPPEVARPYIESVRMLTDEPGGTDPVQQLLFQLDELANGQVDYSQKIQASKWEIIAEIIMLIAELAILAALIAFTGGASVSQMFLARARSKLAILIIIDRLLRMSRVGSLLGEAVQEAIVTLATRLAQIALNTGGRKPGGVDWKDVGVAAAFGALTAGFMEIFDKFLKPIKNIFKDLLGDIFGKFKIDPNSLLFKGLVNGPPTVVTVFVVGGAAESTAEVIINGAFYDKWEFKWETFVGSGTSTVFDMGAGLAVGAGAFSIYNNYFNNDRFTDINDMPGPNSILGGGDGGLSGSEKPGGPASGTDVKGPPVVKTNPFTPGPATPYPNTVSADLPNGPGSGIGTLPPATYTPPPAVSPPAGVNTLPKAGSDALTRPTDFSPRNTSGPNGLTGPNSLLNPGNVVGPNSVVGTNGVIGAGGVTGSNGITGTSGSSLPQLPPPTSSLPSSSSTPSTLPSSSLTDSTPLTPPPTSGRTSGTGTNTDLTSYDLTPETTPELTPELTPDLLPGTSPDTSGSTNELPNNLGGPKGSSSAPDPSTIGGSNGTGSANLPGEVSADTDADGVQDQRQDTSTGQEAPGRGTGGRSTGGQPGLDDAAHQRTGGVPNQADADADAVTPPTPVATSAGPNSPAPAAGNQGTQQGNSATGNSSQQPSQNGSAEPGDADDLPGGQETGQADAEGRQETARGAESPAPPQPRGTGSDDSARAPGGGRSTTGPEVAPAAPEAVRTSSDPSTGGVTDETTGDLGAESGTGLPAGPTPEPAVPVADPVRPEQWRSGRTDAPATAVRTDPPLDAGRTPADTTPLDGPETPVRAWVQRIQADDGRWLSNVSLHLPVRTGEGFSPAELDALQERMRTLLDTHLNHGLQLPGSGDQLHLDVTLTAAPDHAEAVELSRTVTPEGSDHLNWRLHSTDPAASPEEAAERRTRDDAAVLRQLLGYAGIPDRGPAAEALLRRLVRQSDTDTGTPGPAVPQHFLQAVESVVTSAAVADHPLTARGTRPPSGIDDPAQALRTPASGSVDPGAPVRAAVPFRTTSGAPTETGTAARTPESASATDSDADNRLLAEQEPSAQSAEETPPAAVPLATEGRGDGRGPTPGAGKGKGRSTDQETASAGEPVLLDFPGSTAVDDAVDAARREHEDAVAAFGRAARTVSTLDARVTSGRGGTDDTARLYDALQDLSAAQRRLDAALDRLRDLGADAAHDAAVASIVPRVSRTDAERRLTAALVTADDLPTDLPRPAPDALVTPEELAAAGVTPDQGPALEAQLNGSVRFEDSGITDPVQRVRLLMNRPGPWSEALDGIAARASRRTWSAAHENFALDALRGAGVPVGTDPAEAWRRATSLVLPLELHPVLADSRHARGDYLDAVRQVAQHLAVHGADAVSGTELAARVRRELGLPPRLPGGAPASDQSYAAAELERLALLEEPGATPDIDGLTRRVLHLPTDLEVSAGQRDRLLVTVENAMAAGWSSSVDALGAYHLATGGALDHGRHIMAANGAYQGLNLTGRPVGPVDTTQVWQRRNGQFQGPLDPLWDAGTGAYVVVADGGHDHVMLPWGQGQIQVPWREFVELVAHDPGVVGLPADTPVVLVLAHGGDQGLALPRTLAFRTGRDGVWAHSGQVGLVTDPATGVERIVVENRRSEGLPLGGWFGSDADDLGPGGFADEGFVTALNGTILPDPALKTRTIGDDGRSIGRVTMSDPDLVTNEPMLESMAEITEFVQFDPVSEGAIGEPAALLENGRPVYHFAQHGQPLRGVMEVADGSPPVQVGGEETGRYIRRRPSMRKLGPNAVIDLGSCWADATAEDLPYLSDAGEPPYVFDALGTTSYAQGVANGSGAGVMAVDRVHVLMRGATPKAGALASPSGEQGVRSLLLPEPGPAGLAALARTAHLHTGDGPVPADVLDTTLRLVKALRRSFGADVASDGRFEALLRGIGALENMRRADPHLRVLGPFTLHHLHLVTHARHQRTSNDPPSRDDVRRVLLDAAGKRDEAAAGRLTLHQYTPMPSLDWALKRLAGRDLAALAADVLRLPDAGAVSRADVSRLVWGAVKGAEALRSVTDPVALAKKALHLPGSAAPPPDEAGDRLLWLMAGAAVTGFDPADPTELAAWDLVRHGALDDSTRLTADGVPTGRNWTRGTVTGDIATEGYLVSPDGAPDGATPHPAPWPDAPRGSAAKAYVLTADSTNGHVAMPWTDGSSRWVPGSEIAALLRHDRVHQQIALRAPLLVIGSHTNPGSLAQHLAGRAGTARTTLLSELPGALVPHPVNGRNAIVLTEGTAARPDHWQTRRPAALPGVSAQQGPLHTFTGRAPGTESSTAVATSSTAAAPAPLSQYIRDHGRRHDGHVGLVLHEPTPDTVLDGLHRSIVEALGADPETTGGQRLLTRLQDVLSAEEIELNRPYLRSRQGYRITLRHGGRDRTVDVRLSYADPVRSTKYGGDSGGRPPTLPDMGVEARAGGGQSTSHVEGSGNIRTGSVPWSGIFPDDRAGALRWWDSTVNVSATHNQLTQSVTVGETFLVTSKQQAEEPAHPMDVDGRWQIQVDTPREGETDNWQAEQSHGALTIWFHEHLAFDGDDTTALPEPGDVDDLPLWGGDSVAEPRRLLTELLQDDTFAALRDLDEDSERALENFLSQRMLQGTPHLQRDGGVFSPTLLDGDGNAVGVLELTAVIEPGPPMRKSADGRSSLETWFSHASSVDKSAKLTSGMGVEAAGGPAFTTDHTPGHPAAASSFGGNLVGKAAVNWQLTDQLSNVSSATLMHGLRTKSSHLLTSGRVAYTATLHRAGGGRISSTFGPWTDGLRLRIAQRATMAGHRPTPAELRELPEHLENLESIGYTETPLKVDGADPLFTAAEAWLRREGFLPPVRHRSRSAVFRLDEPLVVAQLENLRRLRQMRSTYGLASSAPDAVDGGESVWFERPNAVSGTRRVQLVFSAARDTTRPAVHTRRLPDVLHVGSSSYESGGARQRGTALSGALGGGGGLNAPIDQGSWGLNTAPDYLGTRQLTDASSTAGQVGYDQFTMTTRNGSELFEVPARLGLDLYEGTGEDPLVRFAETDADGNPARPEAEPEAEDDLEMQIGAAATPTVPGSVRLLVPHYRTRVPAPAPLPAPAPAPSPGHVIRQPVTDGGPRDDQRRLALVDDRGRPLPGLTRLPEGAIVDTFRGTSALMTALRRIVAGTYPGSPGRGRVGRAVQRASTTLSGLATETARRGSAMKEALPAGLTGAVNRAGSAVNWAAAPVVWAAKTSTDGAAATYKWTSVAVAGASLNDRGTLAAEARQDAIRPGQLISRAPQILGGAYVVEGLTLPGMAADQVMMLEVTGYLSNPRNLGSESLYSEQDVLSGDTSGRQRGVGVNHQGNLQVTALQAAPTPPELLVHQANPGGRYSQSRRTDDTATVGSGTKITHATEHSGDTLWIGNDLTLLLTVRWGVRNVAGNTVGLGPYAPVTVAIDLPRAVTYLAPAQAVAQLAAWFQGMPGIPALTLNPLDVPLPDRYARTRQLGKATVLTVTQLDDTANRRERRDRMRQELTALVDSEAPGALRPGHASYLPGVATEIARVTEPAALRALPGRGPGGQVRFHFLHVAYGGARLVEVALTAEPMLQTPALRGLRGRRAGAGTGLEHVDTHTPQSRVTTSGTTTTRQGTVNPVSRYPRPGATSWTDRAGPSLAVAETRARTARSEVATEDRFWTRSGSVADFAVDYRYTATVRSQAVWQWPANIPGALFQSGLLNLSGLEGDVAQRVRSWAGRLLRGRPVSRASVPAATALRFVASEADRPKQHEGPRAPALLGADPLLLTATDAAAQGTTPFPQGVRLETTGPTPVYDYNAAPQLMQALYDVDPRMAASWGLPANASAEAVAARLAELVQAGEISLDPSRSASGLTDRMPGSWPVESAGTAPSLRISLHNPRPVTEAGDVAVDRVRRQNRTAAVASSAAGSFVLNQQGSYNLADGKSQVLGVTFPLAAQQPHALSSGGNASAFSFSRLRTGATSDPDDRRIPRTYETLVDTVIEVDGPDGVRYVTGSSTTRLWERDVLGFGVTPARPGPRTYDLPAILADQGADDLRDWAQHPVTDLPDVLADAIDEQDASAELWLALGPDPDGTRLARALFVGSLTAARAGKPVELVIRTGQGLRIWPFAADGSLADTTAATDEAWQNVADAIGVHLTAVRAEAAARYREGRLTRRQPGAVAALDTADRAVDTATTAHRDADRAHTAARHDAATARTELTTLRGRITEARDEITRLDTEAREAQARYDDTADEERGLHARWQRARAEVARLEELVAAAPDADPASPDGQDALDAAIEQADALRDRGRALHQRRAEDLDTAETAREEADGLRTRLERAVARETTLAGNLRRAETAVADAARVLREAETGLRRATGVRDTIQDQVDGIEAELVDVRDELGEQARRHTQAWEDLPALTDALATGRRAEGLGDGPSLRTTVSSAPARPTRAGRLRGQPLPAPPPETSATATATAPPAAATPAPAPRRGLPVAERTELAAGLAAMTEDERTSRLLSLSSADREALAADRALTAGLRRTLPADEFARTAALLMVDVPPGVDLPVSSGIEARAQVARMLRSPAVAERMLNEGARLIVVPKDAATTSLDAFGLLRGETDENARPYGILRGVEAGGLAAVGEENLLGDTTAVPGSGLYADGYSAATHEFAHALHRHGLTDEQRRLITEAFHDKVLAGSFGAWPDGPLYDSSGTRRNYSARDEFEYFAQLTNAYLGTNTGTDPYTGHPRNNGAKWVRRNEPTLLPLLQELYGPDPRAVHHWGANPRAEEDTWAAFRALWDGHDGAYEPQPHAPVPAPPAPPRSAPLNRPRLTATARRIAGPAPRRGLTERRCLVLLGALRDALYPGGVRPAATLDDAALGTATPASALVPGPGWSPVGSWEAVARTVAAQGPGAAAFVLARRQGEALGHAWAAYHLGGFDGVMWLDLSARDGRPLSSAPPPVAASEARALVVGPAGRAVEGALPAFAASSSTPHSLLDAATGRAYGAIGLEIERRLVFVISGLGDVPAKQVLATAPGFSIVTDHASVARTADGRLHLTLPPMVPGDPKPQRFGYLIGEIVVEPMAVLPGERRQSPEETLERLARVERALDGRDQPGAAPQTALADLLPAEDGWTVTELGGRTLVGQTPVRTNRAYVQPTTGFPALGLSLLQDRAVDRLPKGAIGAVEASGREFAMKATAEFVRAVTGRTDVPDVVVPFLAPVPDVDDLWGYLRFAYAHAVARPTGVILNQGPAAFMVKNGLAVASRPALDRVLRALRPRARGFLDRHHDTISAGLAATLGRLLDLYRRTITPDKPLFPGYFDATIGDVPSAREHTTAALTGRTSDGRPVTQKQTVDMDDHRYPTLDTDGGRLDIPLVLTELRHFAYDGEQLMTPEQIRQAVAELAELSREAYRRALAQRAPLPDDVLTESLNRILDNEAVRGLTHFVQMVLMAGLPQPSGSPRRLMPVGESQLISRALGEYALGTPLPVDHPLHRSLRAAVQEAADSVDTLPPGHRPRLQAMVTAAQGALEVLADPERTPPPLQWASELVAADGSRVLLDRILAVRHHAADGTPLGTSSRPDQDWQDARRQTYGLLPEVVGFTYVRPGPVTLESPVQNLPFHDAYLVGVRGGPATAALALSDGTDAVVDYARIVDFLFAFDGDLTALAPERPVLVTGADLAGPPSADPLETPLAGQRLANGLDHWIWTTGRGIEPVLAPGDGPTGPRWQLAEGDWWAGFRPEPTTPELARWAEQITGDRGRAPDVLRWVRAVRLVYGPTVDDQGDALATLLRGFWALDRTRASAGFTDPLTWSDLRSVISAYFTANGQAEPPLPVALQFLLLSAAGAVGLDLELSGMAITPQHHSVRAWDTATPGGVVEDVTDQDEEMSLFAPAPAGQPTAPAALAPAPATASDAFAGPSDPVLDPQTRITGPSGSTQGRNWTRAKVDRVLPGTVRTLEKRPDTAAKVVSTGPAPWPDTAYVVIADGEDGRVLLPDGRELGPEAVADALAADPDLAKLPEDVPVVLAVPYTGDRYQQTLQAVADRLGRTVWGPSGMGRAVPDGSGAHVLALLDRDADAPVGDWVSVEPSTAIGSYLDRTWTALDGTVFRDSDVLTVPLTDEDHRHFGRLAVEQKDGLRRRAQRLRRFLKLRELSHRLPEGTDAGTENEPVGSEPVTTDAAVHVYAGHGAPGRMNLPLRDGRTVWLEKADAAAYIAGLPEVRNLPRGHRMHLEVCWSSSDGDPRRQYPSLGDTPHVDDPLDDVPLDQLVANLTRRETDGSLRQTGFNDTHRIALASATGQRGGRVLRRPEPLGPALDALARDFGLHRGPDPVSPETRQTMLRLLRGVRSVFGTTFEDHRGGPDGRFERVMKGVVALERMRANDGSISHLTPFRLDMLDFFVQEHTGRAPDKRGYVELLDFAAERIADDENARLTDAVSAPSLEIALKQLADNGEQMIRHVQSLPAPAPFTARQVASTLWATTRAARLLRPLTPTAREAMGRRILHLDAATAWDRSRQESLWALLTKAIAEGVDAGDQDVMAAYGLAESGAFSLPAVLRQGANDQGINWSGTPMPAGVDWGSVRQMTFGPNGSSMASVQPAWTGPHKPMPVLNVVEVDGAGRIVLHLPGRAPLPVSETEFLALLERDPGLRTLPLKHPVLFLTTGPGTLSPQLVQRFSERTGRPAYRYSAPMMLSSGDPATPLGILALTDPATKTPGTWTRAARQTNAPAAAAGTGDLIVFSPSDQKSGALPDIGSLSVGDQGQPPAGSLLSPATLMTNASGAPRGRNLTDEKVRQLRIGRVRVYEEEAGAPPKEKAGEDRAAPWGDSAYVVWGGSGPDGVRFPDGRTLDAEQLAAELAADPELAKLPKDVPVVLVVPHLANEQYLAYLRAVANLLERPVWAPSGDGRLVRNKKREHVPALIDHGADQPLGSWVPFRPTKKAAPLPDRAWTALDGTAFRDSDVLTRPLVSDRDERFGRMSHGDDVRGRETLMRTYQRAKKLVHLMASGSRTALISEESRTPDPASYVYVAHGLPGGLQLALRDGRTVWLSAEDGGRYIGGLPEVAELPEGHRMKLEVCWSDAPGNPALPQLDNRPAPAVQDPLEEVSLAQHTANVSRRVTEGSLMSSGFHTDAHILHDAPGGVAGRRRWVSPEPLPHELDAMARTAGLHTGDAEAAPEVRATTLRLVRALRIVFGPEAEQDQAQHARLLRGIGAMETLRANDQALSRFTPFRMELWTFIAQRVGGKTPGPDDYRKVLDLAAGLLAQKPEAPLGEAIGDPAIQHAIRQVTQFGAPLVRNVLRQPENVPVTKRAVTQAFWAMAGAAQQMAGRDDAFTEKLGRRVLHVFPDEEWAPARKQHLYVLTAQAIAAGLDPADFFTLAAFHLASKGAFGPAHQLRSGEGFQGFNWSGSPAPGGIDLRAVGRQDTGADGASLQHFRAPWAAEGEPADAMVAWTDTDAEGFVVLHLPGMRPLRVADREFLALLDLAPPLRTVALGVPVVFVFSGAGSGTGRAAALSEAFSNRTARNGWAYSGALTVAPTTPPGATAIPTAATATPQPAATAAPLRLIGRPETTSGRPGAWRKAWLQGLNSSVLVTAPYGDALFSSPKPAARLTPVPDTEPATTALTTPRSLTGAEITVGPPLDRAGLTALVRRVTSPEPVRGLTVERCLVLLGTLRAELYPQGVRPARTVDDTAVGVPAAESSLVMGPGWHRVRSWDAVAGAVTAQGPGTVALVLAHRQGAAPGHAWAAYHLSGGGVVWVDLSAGHGRQVSLLPPAVAASDARAVVVGPGGQALEHALPEFAPSSSTAHAVLDAPVEPGYGAIGLEVEERRDLFLDLPGRLTSTLVLAHGPGITLVTDSRGFWMTADGLLHVNEPQVPPGQPRPVRRNFAIGEFVLDPMAVLPGERRQTQEEGMAQLQRARAAGRLPDERQVAVPLTEMLGPLGGWTFTETGLTAKVNPAPEGFDWTAYGQLTLGYPTVGLRELQDIAHQRLTVPKFEMAVAVARNFGQSLTATYANQLLGTISVESHIAPFLAAIPEVDEVWGYGWLGFQNVVAAPVGDVFDNARPPGTDPELIKNLLPAASRNALDRILRALRPGTRAFLNEHHDQLSADAAEQLGRLLGFFRQRLTPHLPADPAFFDTAGTEVPTPREHWTAVLTGRTSQGEPVSQRYAVGMDDGDYPVLDTDDGRLAVPLVLAELRHFGYTGQFMTPEEIQRAVTELSAFGRAAYERALRSRAPLPEDVLRESVRRIVDNPVVQGVAGFLMVAARSGIPQVGGGTRRPLTEWDSRSISLALGEYALGRPLYDGHPAYQALRAALTEAYELLPNIPPGGRTKARGFFDAARGALAVLTDPAQTPPVMPWYAEVVAMDGARVLLDRVMVIRHRDAQDIPVGTSSLPLAAWQDGLRQHYGLLPQVTGFTYLRPGPVPLESPVQALPFEDAYLVGLRGGPGGALLALADGTDAAFAYARIVDFLYAVDGDLTALAPERPVLVTGADLAGPPPADPLDTPVAGQQLANGLDRWVWAPGSGAEAFLVPADQLAGPRWQLAEGDWWAGFRPEPSTAELGRWAERITGDRGRAPDVRRWVRAVRLVYGPLLENDATAFEALLRGFWSLEQTRAANGFTGPLSWSDLRTAVSAYFTANGQAEPPLPVALQFLLLSAAGSVGVDLELSGMAITPQHHSVRAWDTAVAGPDFFAPVDTAPVAAPTAAAPSPATGAFTGPNDPLLAPDTLLTGPSGAAQGRNWTAKNVSRVLPGSLRTIESRPGTAPKVVATGPAPWPDTAYVVTADGEDGRVRTADGRGLDAEAVADALAADPELAKLPKDVPVVLAVPYTGDRYLETLRAVADRLGRTVWGPSGVGRVVPDGTGDAHVLVTMDSDPDAPVGSWVSVAPSPTAGPHEDRTWRALDGTVFRDSDVVTRPLADENHQRFGRIAVHRGDALRRRERNFRALRRMRRLVHWTPAGTRAQETASEPVSMDGAVYAYAGHGEPGRMQLPLHDGRTVWLGKHDAAAYIAGLREVRELPPGHRMHLEVCWSSSDGDPARPQPSFAPVPHVDDPLGDVPLDQLVANLTRRDTEGSTRMTGMDDTRRFIMGAADGGHGRRVLRRPEPLDGELDRLAGVAGLHRAPGDVPPETREATLRLVRALRAVFGDAVEDDRATPGGRYERALRSIGALERLRANDPALTTFTPFRSDLLDFFVREHSGREPDLAGYQALLDHAAARITADPDARLTDAVPSPALQITLKQLADAGEQMIRHVQSLPPQASFTPRHVASTLWATARAAQLFRPIAPAAREAMGRKVLHLDPTTPWGRDQQLTVWAVSAKAIAQGMDATDHDLLAAFHLAESGAFGPAAVLRQGPNIQGVNWSGAHAPAGIDWSTLRRPDGTASHQLTPEWVGPGKPMPLLNVIEVDPTGTPVLHLPGRAPVPVPENEFLALLGLAPALRTVSLGIPVLFLTTGPGALSPELVQRFSQRTGRPAYGYSAPMALTAPSPKNPLGIVALPDPATNAPGRWTAAARRFTAATATGQDQPAFFGPPSPADLGTDPFQDQATVLRDDAGKVLGRDLTGAWTDRVRTDRVREAVDGQAAQEPDEPAPWGSEAYLVGDRALDAQGLTPEAFAEKLAADPELPALPPHVPVVLAIPYAGAQYLDLVRAVAGRLGRRVWAPSGDGRLRHDSALQARIPTMTVHDPAGWHGDWVPFDPPAASAPFVDRQWTPIEGRTFRDSDVATRPLVFDRRERYGRVSVGDDLDQRERLLRGLFHRRQRIHYAATTLGDQVVRTEPYTLDPAVYTYYGHGYPGTLEIVLRDGSTVMLTAAEGGRYIGGLREVRELPPGHRIGLQVCYSASPGHPLDQPQEGRPVRPVEDPLDEVSLIQHTANASRLDVEGPTHTAGLDDDSFMLEDTPGGVVGRLVRVRPEPTDAELDRLAVIADLHGDPDTVPPEVRATVLRLVRALRLVFDHAVEDDRWVPGGGYERALKGIAALETLRANDPGMRRFTPFRMELWTFLARRVGGDTPGRDAYRDVLDAARQLIGGQPDSTLSGMLPDTPLTYAVDELSGSQGEDLVRDAVGLPEPVTLRPKDITRAFWAMVAGVDLVLFRLDPAQQEGLGRRALHLAGTEVWSDATTAELTFLAVRAHARRIDITDPHQLAAHHLRELGALRQTLTDGTEPIGYNWSGRPAPNGVESDQWYARVKAGNDVLTLPHPAQWRSTEPGGKSLVIWTGTRADDGGIVIHLPGHTPLPVPDEELWALLDLAPLVTDAGVDVPVVFPMAGFTYGKARRTQPFTDRTGRSAFGYSGPLDLIEDDPFDPLRITALREKKLGQWTRTIWKPRPAQGAVTGTPGGAVKAGPSAWPVHSARHDSGTGTFHFTTGAPRRAAERDGESGRPDIAYPSAVRINATPVSTADQDGAPGRDPADAAPAATGPVPAAATGPAWALRSWRPAGSPGTARFAALYRDREWRRRSTAFELAFAAHTGRAAGLTEAARDAVSRMAGELTARHGEQAAQRAFFAPDAPPGDPAAALERLLTAPPGPLTLAALMTAFTYAAHAGHGLPRETAETLARPPGRQGRYTPGSSYREVHDSRGLRRVGGEAGPALRLLRTYAALGAAPDSLTVLRDALIAWAIPADLQSLHEILRASHRVGGGTAAERDTALRDGAGLHTWAAGALIAGSSEGEGRTDRPAALVPPHLALYAERMTFGRDITRSGLNLPDDLAHLADAALAGTLRPDTARNRALLAWLDRYGDAGRDALRRLSPAHLTAIHLYSGADYRLMKAFLNGERFGAGMGRRLVRLNAWTMTSKMAEVGAADLLPMTLRRQRGFTALFDAMWDVDDLRERTTEVAALRRRLDAMADAVFAELPSHVDMVVEALEILPPLHGDVWWGDRGMPGPLGAPPSDGPVYGRNRITVPFFRSTALERDEALGFMHRSKGAPGDSHLGLVHVADSTAREVSPFVVLPLETEVLYPPGASFDVTTRTVVPGDTLTRPYESIDVTEAAATGTTSGTPDALFGIAPPADARETPSRRAPVLRTVRRQDGSTIGIASFDDADWAERQQEYGRLADATGFVSWERDADGRPVPTHRALPGGGTTGGTFFFASHGGGDGLALATEEGGRRTDDGSYAGRLLRSAGTRGFGSVTVLACGPGDVPRNRAEARARAERIADRAGLPVHLPTGRVAVSDGLPHLLEDADGQPTEWVTAYPVGWTGPRVPTPGTSAAGRTAYRYPAPGQFNVQGRVLDAAPEELDDLDADRGTPWSVSSWSPAGAPGTPRFTGFYRERAWRQASVDWEDSLAEALSEVPRLAEATGLAVRGLYGQLALRNGEERAAHAFFDPEETPDDPAAELERLLDEPPGPEALDGLMRAFVYASYAGPGLPTPVHEALTGGGGRFGGDSAYRAVHDSRGFRRVGGERGPALHLLRVAAALGLPAELLAPFRAAVAAWTIPYDLQSLHEVLRASHLIGMGAAAERGAAARDGAALHTWTVDAFTADGLLAREDDGRAPAALVPPHQALYQDRMSFPYELTGTMDVPDALVTMADAALAGALPSLPTPRLQIMAAWLERYGDRGAAALRQLTPAHITALYLYSSYDYRLMKALLNGERLGRGVSRHLVRFHSWQYLLESAREEELDMPPLTLVSRPEFADLYAELTELPDLDTPHPDLAALRRRADAMADRLHDELRLHIDMAIEALEILPSVDRTIWWGERGAPGPVERPALNGPLYGDGAIEVAFFRSTSLKIEEAVEFALSDKPVPARSHRRLIEVANSTARDAAPFLKHLSEGEALYPPGMRFDVVSRRLVESYRRPPMLHEVAEETTPLPDGLSEVPRTGPVPYTPAVFEDAVDDVFDLGRSDSDLSDVELSDVDGYSETDSDADSGLVADPSETATRAYPRHDYWNAPWEGQGTAPATQQIVVQEIEADGRTVGKASFTRRDWALREPFYSRLPQATHYTEWSRGPAQERVAHRRPLPATGASGTFFWTSHGGPEGYAVAGANDLPAGADSAAVGRLLGPDPAAAGFTSITVLACDVATATGGPAGTAPGGESLERAVRRAADIADLTGLDVYLNTGRTAITPGRDEDGGPTADIHLLEAADGSPTTILRVPPRSRAGADAVLPAVPAPAADAPATQPWSVPGWRVAGAPETVRFARLYGDRNWRNLSFRFEAGLAQRLAAEPETVQAAAHALSRLRQALAQRHGPLAADGAFFQGPEAQQRTGQPDAVARFLESGPSVPQLVRAFGLAAYGNGGPVTLQQTLPGWLAMPWPPRPNGNRQGAYRLAHDPRGFRYVGGMVGPALWMLQAYRALGASGPELLAFRKAVLSWAVLTDTQSLHEVLRASHLAGVGLEPERAALAHDGARLHQVTARVFGMGPVLPHHQAYDQRTRFFSRLDTHVPGDLVQAMNAAMTGAPVSEELAERTEVATQWLERFGDRARASLHALTPGHLTALYLYSSQDHELFKTYVTAGRFGEAVGRWMFGQRVWRYVREDAVESGQGLPELLDRDEDLSDAMSDLRDLDADATGPDVQEIRRRVDRVADRLYDDMSMHVDMAVEALEILPPLNGPVYWGGWLPGPVDAIPQDSPLLTATTLFVPRFRSTTESWETAGGYTRGDLEEMGDARDRHAMRGYVEHSTARPMAPFSAWLNEQEALYPPGAALDIVNREVVTEPETGRDYLDYEFREMPGYPHPAYHNAQDATSPRIVELTDDTDDTGESGTRQPEATAPRDGYRRTGPYAAELDGTLYTLHESPGEGDRTADVLLLAVRQVAADGLRDAGVDTAEDFRAWLGGTVTEDDVSDLDIPPLDGGQDLPLALLDRAGVSLGVSLRTEAMLYGDRLPASRVEPAPVQRLRVLLADPSYQQGGTTLPMRPLAAATARSLGVTVAVAGPDGEVTFHGERTEGGPLALLVADGDRHLAGLPEGPGDTAVDEEERLNRLVHALSFAPASVLRRAADRPAPEWVMARIRYMTEAVRFEQRLGRYLGGYEAVDAQLAVMTRELWDRAVAAGRWAELGSDDPTVDGAVGTGRDQLLAVVESGNTRERMGMLWIGSQAPDGQGGVISELLGSPDPNPDVITEEYRAARPPSWTITAYQQLSGQPDRTPEEQRRMERAERELRTRARVEDLSPPLSEAERALMPDDGIPWIPGMHRYDIAMDSVPQAEAEDRGALVRAATSGSAHRLMSQAVKMRQEWGLDIDLGLVRLALMAEMLQAEHHGLDEIMRGSQLVLDRLRHAGTPEPADLDYVDNWGRYWRIAPLTEAELRQHVAVDGLFPDEHALHPFGGEELSGPADPADPAVAAWAQEHRIVLEDALRLLSALGPDTASGAAPLTPERLERLVDDWFRDRNQIPPGSLADRIRRILNDVRA
>NZ_CP029361.1|WP_030806652.1|5437917_5438676_+|SseB-family-protein
MNDSTAAGPATTGDDAAPPVPEEIREAARLAPDHWLGMVDPAWTGEGDPPEWAVVGRWRSGLDGDIEEWQPNEAYQPSPQALGWPAPTDPVDEAVQLSATGYGPGEAVPRALATAEVAVLLAPGGVPLSAVSPDGTAVVPVFSSPVHLHAAGRFGYELAPVTEVMERLPEGHLLYVNPSGPVGMTVETDALRRAVEEAAGATPEEPGRSTEAGADAPESSATEADGPDSFPAAPLPDPAEETGRDASARSES
>NZ_CP029361.1|WP_044373454.1|5438720_5439548_+|type-VII-secretion-system-associated-protein
MTSPSGAPDREPDGPADAETADGPADSGPRPSGVQGGPSAVLRGRPGFREPPEDYVEAAKAAPDHWLSVIDRHWTGDEDEPTPPWAILGRWRSDTEGDIVEWEENTEYRPSPDAHGWAPPVSPVDAAVQLVATGYASEDLFALMVADAEVAVCLDEVGGLAVTDAQDGTQAVPVFPASPTLDQDRLPPHEMMLVPDLLDRLPEGKEVLVLSSSAPVGQLVTASALLAAQAELEEFARLEEADAWPPGLTAGGGSEATPRPSGSAEERPEFFRGES
>NZ_CP029361.1|WP_078955583.1|5440106_5440751_+|SseB-family-protein
MPDAAWPGQGTPPDWAVPGRWRTDATGTIVAWEDNESYRPSPEALGWPRATDPVESAVQRAVTGYGPAAEVLRTLAASKVAVLIGSDGEPTALRSAQGDPVVPVFTSPAHLRALGSLAARLLPVADVVAGLPEGHSLYVNPTGPAGMIMETQALAEEIAAQERGEARPVSTDSPEGPSAPRILAVHVTDADRLVADAPGRTETAASPAGTEARA
>NZ_CP029361.1|WP_104011614.1|5440747_5444656_+|hypothetical-protein
MKGRGVFARRRGTGPSTGAGRDRTTAAPAASGEANGGAEEGFLVEDHDGLLLLRTFSDDTLTPADVADLARTMRADEDTVTVIAGVEGAGSAAFWPKLSELLDTLSESGADSVRLVMPGAGLDAEGRPATARRIADAWRMEVEAPDGPPLVVPGGSLFIPSVEGAGRRSSAGAWWRFAPGKRPEPLGPRSPQPSWQSALDELPSALAGGCVVEQIPAGVLVRPSGAAPARPGDLYHAVPVDPRRLTVVVGVPFGEDISAEEVAEVLEALPDDVQVDVRLVPGGRRDLLPLAQSVSDRLDIDVEVMTGLPLVAAAGLMGTYSVRSVLATPDGTPAWIPFVDAVRCSPPDAEGRARPPRLLRWSPPLPGPARPEEGVVGLTDDWQLTVTRAGMWVGPRGGPALSPTARRVDPAGPMIELGMPGELLDASLWPVLSNVLESLAPDLRGRTVLHVHGVARDGGRELRRLAAQYGLRTLRHAAPAPVRARQQTAPDRPAAAGAVAPSGATTVASLSPPPHVRGTERPASSGPAERAGQGPRTQSGQPAVPHQPGRASGAPPAPPAKIGGRAARTERARELREAMAAGTETGAGERASAATGAGTSGTTSASAPSGTPGRRGPSGARPAPGTPTTANTPGTSGAPGTAATSGTPAGPATSGTSGAPGTSAPSGGSGVPGTSAPSGKPTTSATSGTPVTPGKSGASGRSAARGERERRADTFDWSDDRVPTGFAGRARSSGTTAGPALGTRAAPTPQAPERNTGPSGRPEAREPEANAPEAEVRAAGRGEDPVRPSGLDEGGRAGAAAETGSDDNGGAAETSGPDERAEGDPATGVTTGNAATTDGPAAADGSEPEGGQDRSGAERKDPAPGAPEGPDGEGSPSADAGSAPPERPGEPEAGGASTIAPEPGEADDEKTPAEAGAPEISAVADGPAAAPTPKPSTGPDSVEVAPAAPRSEGPEVRDPEPAPAPPGPPHRVVAESSDPVPATAPLTSTASSDSGAARLPDVPPVPDAPDSRGVPDPEAPDTADTGHVSEAGAEDGEGNEDEGAEIVQAPLPPILLDPGHRSSEAERTAFRALAGDMWDRHGAAVARALARMPALRGKEQEAARADLIALRMYLHLSEGPFSHGALTWSLRDRELDLLPYGACVASALNRMPSYRGAVLRGTTASGDDGRPGPPRPGTLLRDAALLSTVRLDAGTAPPPGDSYVIWSVAGRRVRQFSEQRGPEEVVFAPGTLFRVLAVRRAQPGVQIHLRELTGPAGALAPDPEGDRAVLARLEAVAAGPEATPKGTGHWPERCAGAVGAGP
>NZ_CP029361.1|WP_044373483.1|5444818_5446090_+|hypothetical-protein
MPGTPGDPGSALAPGGGERPGGKAAPASGTAPETATRAESPASGTSAKTNADANTNAATGPDAAKTGEATGTRANAPRGEAESTAEPAAPAAALSGAASASASSASVPTAELATVSTDGPASGTVATATGTGGGGGASSQEGDEPPGSRPKKPMLAAAGIVGALLIAVPFLLAGQDDREPERTRTENAAGTVLDSERPPVPETYTSQSPAPSPTPSKKEKKEKKPVEPVVHQQPVTPSPTPSPEKSKDAKKPKVKAKVLTPAEKLRQWANGRSGVQNTVIKNADTGQCVDVPGWGKGEVDSRINQDPCTTSTSDNQLWNLDIVDKDGGPQNAPLFLIRNSKGGLCLDLGYYGARSAGTKVTQFHCNATGDNQLWWLDPRGDGTNWIRNAVSNDLCLRPTGGASAKDDTALEIANCGFGDRWIV
>NZ_CP029361.1|WP_044373456.1|5446612_5447884_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MPGPEALAAHRDRAQQDYAELVERGLSLDLTRGKPAADQLDLSAPLLALPGETYRSAESVDTRNYGGLHGLRELREIFSGPLQVPVEQLVAAGNSSLELMHDSLVHAMLSVLPGAASRWVEQERIAFLCPVPGYDRHFGVCERLGIEMIPVPMTDQGPDMETVERLVAEDASVKGIWCVPKYSNPDGVSYSDEVVDRLAAMPTAAPDFRIFWDNAYAVHHLTDERVAIADVLAACAGHGHPDRAFVFGSTSKITFAGSGVGFFGASPDNVAWLLGNLAKRTIGPDKVNQLRHALFLKDEAGVHAHMDLHRAKLRPKFDAVLRILEAELGGTGLATWTDPKGGYFITLKVLDGCAREVVRRAADAGIVLTPAGATHPHGQDPDDAVIRIAPSFPTPEELEQAIAGVTACVRLVGYEKLLADTAS
>NZ_CP029361.1|WP_030806630.1|5447900_5448098_-|DUF397-domain-containing-protein
MEHGPDLTNADWRKSSYSGSTGGDCVEVAPSPTCGSVPVRDSKNPTGPAIILGAPAWQAFVDGLR

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Crispr_ID: NZ_CP029361_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_10

5888098-5888257

Orphan

Consensus_repeat	Method
GTCCTCAATCGCCGGACGGGCTGGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029361_10

>merge|NZ_CP029361|10|5888098-5888257|CRISPRCasFinder
GTCCTCAATCGCCGGACGGGCTGGAATTGGCCGCCCGGTCCGAGGCCTCGGGTACAGGCGTCCTCAATCGCCGGACGGGCTTGATGTGGCCGGCGTCGTCATCAAGCCCGGGTCTGGGCTTGATGGGGCGACCCGGTCATCACGTGCCGGACGGGCTTGA

>NZ_CP029361|10|8|5888098-5888257|CRISPRCasFinder
GTCCTCAATCGCCGGACGGGCTGGA	ATTGGCCGCCCGGTCCGAGGCCTCGGGTACAGGC
GTCCTCAATCGCCGGACGGGCTTGA	TGTGGCCGGCGTCGTCATCAAGCCCGGGTCTGGGCTTGATGGGGCGACCCG
GTCATCACGTGCCGGACGGGCTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_030583235.1\|5886028_5886232_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP029361.1\|WP_044370938.1\|5896304_5897072_+\|serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP029361.1\|WP_044370912.1\|5881932_5883078_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NZ_CP029361.1\|WP_044370930.1\|5890164_5891055_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP029361.1\|WP_030805669.1\|5883179_5883962_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236110
NZ_CP029361.1\|WP_162648886.1\|5892943_5894206_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP029361.1\|WP_044370927.1\|5889418_5890168_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224968
NZ_CP029361.1\|WP_044370910.1\|5880868_5881933_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_CP029361.1\|WP_044370940.1\|5897217_5899038_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|366567
NZ_CP029361.1\|WP_044371121.1\|5884016_5884604_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
NZ_CP029361.1\|WP_044370907.1\|5879724_5880294_+\|HutD-family-protein	unknown	unknown	gnl\|CDD\|377578
NZ_CP029361.1\|WP_044370936.1\|5895102_5896020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_044370916.1\|5884641_5885799_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181123
NZ_CP029361.1\|WP_030805677.1\|5880349_5880841_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274679
NZ_CP029361.1\|WP_030805647.1\|5891058_5891808_-\|enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181174
NZ_CP029361.1\|WP_044370905.1\|5878975_5879728_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378410
NZ_CP029361.1\|WP_044370931.1\|5891902_5892841_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236099
NZ_CP029361.1\|WP_044370924.1\|5888330_5889419_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP029361.1\|WP_044370933.1\|5894308_5895064_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP029361.1\|WP_044370921.1\|5886417_5888022_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_030583235.1\|5886028_5886232_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	6.19581e-36
NZ_CP029361.1\|WP_044370938.1\|5896304_5897072_+\|serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	4.55074e-72
NZ_CP029361.1\|WP_044370912.1\|5881932_5883078_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.73033e-123
NZ_CP029361.1\|WP_044370930.1\|5890164_5891055_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	1.90069e-52
NZ_CP029361.1\|WP_030805669.1\|5883179_5883962_+\|SDR-family-oxidoreductase	gnl\|CDD\|236110	PRK07831, PRK07831, SDR family oxidoreductase.	7.81764e-164
NZ_CP029361.1\|WP_162648886.1\|5892943_5894206_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.03324e-33
NZ_CP029361.1\|WP_044370927.1\|5889418_5890168_-\|CoA-transferase	gnl\|CDD\|224968	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism].	1.58748e-28
NZ_CP029361.1\|WP_044370910.1\|5880868_5881933_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	3.01395e-19
NZ_CP029361.1\|WP_044370940.1\|5897217_5899038_-\|beta-galactosidase	gnl\|CDD\|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	1.1716e-126
NZ_CP029361.1\|WP_044371121.1\|5884016_5884604_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	1.57842e-16
NZ_CP029361.1\|WP_044370907.1\|5879724_5880294_+\|HutD-family-protein	gnl\|CDD\|377578	pfam05962, HutD, HutD. HutD from Pseudomonas fluorescens SBW25 is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterized repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. Evidence outlined by Zhang & Rainey (2007) suggests that HutD functions as a governor that sets an upper bound on the level of hut operon transcription. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of PA5104 (HutD from Pseudomonas aeruginosa) show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.	3.0317e-61
NZ_CP029361.1\|WP_044370916.1\|5884641_5885799_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181123	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase.	0
NZ_CP029361.1\|WP_030805677.1\|5880349_5880841_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	2.51517e-05
NZ_CP029361.1\|WP_030805647.1\|5891058_5891808_-\|enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181174	PRK07938, PRK07938, enoyl-CoA hydratase family protein.	7.56935e-148
NZ_CP029361.1\|WP_044370905.1\|5878975_5879728_+\|VWA-domain-containing-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	1.42092e-91
NZ_CP029361.1\|WP_044370931.1\|5891902_5892841_+\|SDR-family-oxidoreductase	gnl\|CDD\|236099	PRK07791, PRK07791, short chain dehydrogenase; Provisional.	4.82301e-153
NZ_CP029361.1\|WP_044370924.1\|5888330_5889419_-\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	1.45027e-85
NZ_CP029361.1\|WP_044370933.1\|5894308_5895064_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	4.03345e-19
NZ_CP029361.1\|WP_044370921.1\|5886417_5888022_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	7.72715e-122

>NZ_CP029361.1|WP_044370921.1|5886417_5888022_+|DEAD/DEAH-box-helicase
MTSSERSERQDRTPRSRPARGRGRGQGAGSQAPANGRGGAPRSRTQGGSKPAARRKPAVAAPAEFALPETMTPALPSVDAFADLDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLARTAGRRSEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRGAEVLVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFMPQVVALLKQVEADGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKAVATKIAARDGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREMTRLMQDAGIAPRTTRVTSSDEELSRITGAREPSGVAIVIEVPQPTPPKQRTRSGSGSGGGAVRSGSRGRGRRGSGAGAGAQGGAARSGAPARSGAPARRRRAA
>NZ_CP029361.1|WP_030583235.1|5886028_5886232_+|cold-shock-protein
MATGTVKWFNSEKGFGFIEQDGGGADVFAHYSNINASGFRELQEGQKVSFDVTQGQKGPQAENIVPV
>NZ_CP029361.1|WP_044370916.1|5884641_5885799_+|acetyl-CoA-C-acetyltransferase
MTEAYIVEAVRTPVGRRGGGLGAVHPADLGAHVLRELIARSGVDPAAVEDVVFGCLDTVGPQAGDIARTSWLAAGLPEEVPGVTIDRQCGSSQQALHFAAQGVLSGTQDLVVAGGTQNMTQIPIAFASRRAAEPLGLTQGPYAGSEGWRARYGDAPVNQFHGAQLIAEKWGISRRDMEEFALTSHRRAVRALDEGRFARETVAYGNVTADEGPRRDTTLEKMAGLRPVVEGGTVTAACSSQVSDGAAALLIASERAVAEHGLTPRARIHHLSVRGEDPIRMLSAPIPATAHALKKTGLTLDAIDLVEINEAFAPVVLAWLKETGADPERVNVNGGAIALGHPLGATGARLMTTLLHELERTGGRYGLQTMCEGGGQANVTIIERL
>NZ_CP029361.1|WP_044371121.1|5884016_5884604_+|TetR/AcrR-family-transcriptional-regulator
MTPTPERRRELLATAAEVFAAQGYNATTVRRVADEAGMLAGSLYYHFDSKESMLDEILSTFLDELWQGYDEVLAAGLGPRETIEALVTESFREIDRHRPAVAIYQKESKHLATQPRFAYLADSQTKFEKAWLGTLERGVTEGAFRDDLDIRLTYRFVRDTVWVAASWYRPGGHHSPEEIARQYLSMVLDGIALRT
>NZ_CP029361.1|WP_030805669.1|5883179_5883962_+|SDR-family-oxidoreductase
MSAPPYLPGHGLLTGRTAVVTAAAGAGIGGATARRFLEEGARVVVSDAHARRLKESAHALADTFGPDRVTALTCDVTDEDQVAALFEHTERTHGGLDIVVNNAGLGGTAELTEMTDDQWTKILDVTLNGTFRCTRAALRSLKAAGRGGVVVNNASVVGWRAQRGQAHYAAAKAGVMALTRCAAVEAADYGVRVNAVAPSLAMHPHLAKVTSAELLAELTGKEAFGRYAEPWEVANVIVFLASGYSSYMTGEVVPVSSQHA
>NZ_CP029361.1|WP_044370912.1|5881932_5883078_-|acyl-CoA-dehydrogenase
MDLEQTARTEALRTEARAWLREHVPARPLPSLETGEGFAAHREWEALLHSGRWSAVSWPEEYGGRGADLFGWLAFEEEYWAAGAPGRVSQNGVSLLAPTLLAHGTAAQRARVLGPMASGEVIWAQAWSEPEAGSDLAALRSRAVRTEGGWLLSGQKTWSSRAAFADRAFGIFRTDPGATKPHQGLTYLMFGLRDPGVTVRPIGRLDGKPAFAEIFLDEVFVPDEDVIGEPGQGWRIAMSATGDERGLTLRSPGRFLAAAGRLRELWRRAGDPADTALRDRVADAVIGARAYQLFTAASASRFAAGAALGPESSLNKVFWSRYDIELHETALDLLGPDAEVADTAWAEGYVFALAGPIYAGTNEIQRDIIAERLLGLPKGRR
>NZ_CP029361.1|WP_044370910.1|5880868_5881933_-|acyl-CoA-dehydrogenase
MRFLLTDEQREFGRSLDALLTAADTPAVLRAWAAGDHGPGRALWGRLADAGVFALAVPEAYGGVGPLPVEAAVACVELGRHAVPGPVAETLAAGVLLAGAGGPVAEKWLPGIASGAAVVSLTLEGYGPYAPDADAADAVFTVTGDELRLAPGPGEPSASADPARRLFRPEPGGAPVAKGPAIRAAARAAGDTAAFATAALALGCGEELLRATVAYVKQRTQFGVPVGSFQAVKHRLADTLLGLEFARPLLYGAAVELASEVSRPGAGAGAGSAEGSPGAGAGSAEGSSGAGAAVAAAKVAAGEAGYAAARTALQLHGAIGYTEELDLAWWLRRARPLRDVWGTPSACRARVLAG
>NZ_CP029361.1|WP_030805677.1|5880349_5880841_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MAPMTSSSPLSWDGFATAEPDFADTVQRRFRLYKHHVLATLRKDGSPRVTGLEADFRFGEMLLGMMPDSFKALDLRRDPRFALHANPGPDAEMNDGDVRVSGRAVEITDPEVIARFIEEATPPEPFHLFRTELTEVVRIGLDNDELVIQSWRPGQPLRTVRRK
>NZ_CP029361.1|WP_044370907.1|5879724_5880294_+|HutD-family-protein
MTVRILRAADLSPAPWKNGGGLTREIATGPEGAGADAFDWRVSLADVTADGPFSAFPGVDRILTVVEGAGMDLVVGGEHHIVDEPLWPHGFPGDLPTEGFLLGGPVVNLNVMYRRARTRAETAVVCGTVRLLPPEGGAVLTVSLDDGAELESVGGGVRLDRYDAVLAAGESPGVLRTMGQAVLITLSGG
>NZ_CP029361.1|WP_044370905.1|5878975_5879728_+|VWA-domain-containing-protein
MHGVDTAVGRSGPAISLTKVQETAPALVSLYKSAGVSLEKHGLNGHRAAVYLVIDYSGSMKPYYQDGSVQALADRVLGLSANLDDDGTVPVVFFSTDVDAVTDIALDNHHGRIDKIAAGLGHMGKTSYHLAMDAVIDHYLDSGSTAPALVVFQTDGGPINKLAAERYLCKAAKLPLFWQFVGFGNTRSSQFDFLRKLDELAVPAKRPVDNAGYFHAGLDPRKVPDSELYDRLVAEFPLWLAAAREQGIVR
>NZ_CP029361.1|WP_044370924.1|5888330_5889419_-|nitronate-monooxygenase
MRTALTDLVGVRHPIVQTGMGWVAGPRLVTATARAGALGILASATMTPEQLRSAVREVRSRTDAPFGVNLRSDAGDARERVRIIVEEGVRVASFALAPSRELIAELKDAGVLVVPSVGARRHAEKVAAWGADAVIVQGGEGGGHTGDVATTVLLPQVVDAVDIPVVAAGGFHDGRGLVAALAYGAAGVAMGTRFLLTSDSTVPDAVKARYLAATAKDITLTRAVDGLPHRMLRTEMVAELENGTGRLRALYGAVRRASRFRRLSGLSWPGMVRDGLAMRHGKELSWSQVLLAANTPMLLRAAMVEGRTDLGIMASGQVAALIEDVPSVAGLVERVMADAEGTLAALAAMSSPPGAESSPSGA
>NZ_CP029361.1|WP_044370927.1|5889418_5890168_-|CoA-transferase
MNASAVESTTRAEYCVIACAEAWRGGGEILASPMGAVPSVGARLARLTFAPDLLLTDGEATLVGPGGEAEGWLPYRRHLALVTGGRRHVMMGASQIDRFGNQNISCIGDWEQPARQLLGVRGAPVNTLNNPVSYWIPRHSPRVFVERVDMICGVGHDSARAAGPSATRFHRIPRVVSDLGVFDFATPDRSMRLASLHPGVTVGQVREATGFALTVPADVPYTRDPSPAELTLIREVVDRARTRDREVRA
>NZ_CP029361.1|WP_044370930.1|5890164_5891055_-|CoA-transferase-subunit-A
MTTAPYARDKTMTPEEVVDRLSSGMTIGIGGWGSRRKPMALVRALLRSSVTDLTVISYGGPDVGLLAAAGRIRRLVTAFVTLDSIPLEPHYRAARQRGAFALTEIDEAMFMWGLHAAANRLPFLPVRAGLGSDVMRVNPELRTVTSPYEDGEEFVAMPALRMDAALVHLNRADRLGNGRYLGPDPYFDDLFCEAADAAYVSCERLLETRELTEGAGALQTLLVQRHSVTGVVETPGGAHFTSCVPDHPRDEPFQKAYAAAAADPVAWADFAARFLPPDGDEKSYREAVRVWHEEQK
>NZ_CP029361.1|WP_030805647.1|5891058_5891808_-|enoyl-CoA-hydratase-family-protein
MTVSTSSPSGAGGVRVVTVDRPPVNALPVQGWYDLADAVRAAGRDPEVRCVVLAAEGRGFNAGVDIKELQRDPGHASLIGANRGCAEAFAAVYACEVPVVAAVRGFCLGGGIGLVGNADAIVASEDAVFGLPELDRGALGAATHLARLVPQHLMRTLYYTSRTVTAAELLAHGSVWQVVPSAGLQDAALALAAEIAAKDGHLLRLAKAALNGIDPVDVQRSYRFEQGFTFEANLAGTAARVRDTFGKEA
>NZ_CP029361.1|WP_044370931.1|5891902_5892841_+|SDR-family-oxidoreductase
MTAPTAHRAGLCAGRVVAVTGAGRGLGRAHALAFAAEGARVVVNDLGVGPDGGGGERSGGPARAVVDEIVAAGGEAVVHGGDIATAEGAASLVSTALDAFGRLDTLVNNAGFLRDRMLVNLDEDDWDAVVRVHLRGHFLPLKHAAAHWRAETKAGRTPVARVINTSSGAGFLGSVGQGNYAAAKAGIVALTLVAAAELGRYGVHVNALAPAARTRMTERTFAEAMAAPGEGEFDAMAPANVSPLVVWLGSAASDGVTGRVFEAEAGRITVMEGWRPGPTDDRGARRSPAEAGETVRRLLADAEKPGQVYGAS
>NZ_CP029361.1|WP_162648886.1|5892943_5894206_+|GNAT-family-N-acetyltransferase
MTRHGPLNEFCWMDLKTRDPSGTAAFFSAVLGWDFAVDEADWRRAVVFRAGDHRIGGLSDLAQPVYPPGLPAHVAYYLAVDDVDHRTAVAAENGAQVLLPPFDAGDQGRISTLIDPVGAAVSLWRPRGFAGWPVSPPDEGVAIPHHMVLVCADPERARHFYTGTTGAPLARTAFLEAAPGAAPHWELAVAVSDPDRVAARARELGGELVTLTGGAARLSSPEGLTLRLTTTPQVSPAFLETDRLVLRPATAADAADLLALDSDPAVMRYINGGRPTSAEDIRDRTLPRLLHDHACTGTRGYWIARERDTGAFLGWFELRPLDEHDPAVVELGYRLGRAAWGRGYATEGARALVDKGFTDLGAQRVTANTMAVNTGSRRVMEKTGLTFLRAYTEDWPEAIEGSEHGEVEYELTREAWMRGR
>NZ_CP029361.1|WP_044370933.1|5894308_5895064_-|ankyrin-repeat-domain-containing-protein
MTNEPIRDEPSLFDALYEDENTVVRALRAGAPAEASDEEGTTALYTAAVQDRPEMVRLLLVAGADPDRASGPEAGDLPLCGAACGGHTEVVEALLSAGARPDLREEFGFTALRWAVGLGHAATVEALLAGGADPLLPGPQGEAMLVLAAQRGSVRTVRALLAHGAGAEGQESAVASALAEARRIAGLDPERELLRRLEEMYGSGLDTVVLRERRDGEETVAVELLRDGVPSAGVDQHTGHAEIVALLDGRA
>NZ_CP029361.1|WP_044370936.1|5895102_5896020_-|hypothetical-protein
MGDSGVTNSPPGAPVAHGFPHLETVRSAITALYRRLSADGVRTYATSLAPVDAAFADEDDLHLGAQRVARSLVQHLRLPDARMIVGFRAMEHAASVELTAGPEYFIELNDRFRTHRRDIGAALAHETTHVLLHRLGLEFPGTRANEILTDTTTAYLGTGWLLLDAFREDATSRQKLGYLTPEEFGYVLAKRAFAFDEDPSPWFTSPQAYTAYTKGRQRALDDLRRPPLTAAGWTGRRRYAKDRRYAQDHPGTAPDPSVPYAFETGAEGLRVSFPCPTCHQRIRLPVRGRVSARCGLCRTRLECDT
>NZ_CP029361.1|WP_044370938.1|5896304_5897072_+|serine-protease
MKLLSALKRCSVAIAAVALATVSLQPASAAPQPIVGGERAEQGEFPFMVRLSMGCGGSLYTQDVVLTAAHCVDGSGDDTSISVTGGVADLESPDAITVNSTKVLQAPGYNGTGKDWALIKLDKPIDQPTLKIATDATYDEGTFTVAGWGADKEGGSQQRHLLKADVPFVSDSDCQGAYSNLVADEELCAGLLDTGGVDSCQGDSGGPMFRKDDSDEWVQVGIVSWGQGCARPNYPGVYTQVSHFAADIASAADSL
>NZ_CP029361.1|WP_044370940.1|5897217_5899038_-|beta-galactosidase
MTDFTVGDDGFRFEGKPVRLLSGALHYFRVHEEQWEHRLAMLAAMGLNCVETYVPWNLHEPREGEVRDVGALGRFLDAVERAGLWAIVRPGPYICAEWENGGLPVWVTGRFGRRVRTRDAEYRAVVERWFRELLPQVVRRQVVRGGPVILVQAENEYGSFGSDAVYLEWLAGLLRECGVTVPLFTSDGPEDHMLTGGSVPGLLATANFGSGAREGFEVLRRHQPKGPLMCMEFWCGWFDHWGAEPVLRDAEQAAGALREILECGASVNIYMAHGGTNFAGWAGANRGGPLQDGEFQPTVTSYDYDAPVDEYGRATEKFHLFRKVLEGYAQGPLPELPPEPKGLAVPVRAELTGWAGLGDVLEALGGPETESGVPPTFEELGVDRGLVRYRVAVPGPRQAYPLGASGLRDRAVVYVDGVRAGVLTEESGTLPEPVAGPAEVELWVESLGRVNYGPRLGEPKGVTGGVLHERQYLHGVRARGLRLDAFETPGAVAALPFGPVEAAAGAGDAGRTGLFRGAFTVEGAAGLGHAGLELPGWTRGFVWVNGFCLGRYWSAGPQRTLYVPGPVLREGANEVWVLELEDAGGPWVELGPGVPVRAGTPGVVQR

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Crispr_ID: NZ_CP029361_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029361_11

7088475-7088563

Orphan

Consensus_repeat	Method
TCGGGTTCGTCGGGTGGGACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029361_11

>merge|NZ_CP029361|11|7088475-7088563|CRISPRCasFinder
TCGGGTTCGTCGGGTGGGACCACGCGTGTCGGTTCTGGGCTTGCGGGCGGTGCGACGCGCGGGGGCTCGGGTCCGTCGGGTGGGACCAC

>NZ_CP029361|11|9|7088475-7088563|CRISPRCasFinder
TCGGGTTCGTCGGGTGGGACCAC	GCGTGTCGGTTCTGGGCTTGCGGGCGGTGCGACGCGCGGGGGC
TCGGGTCCGTCGGGTGGGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029361.1\|WP_044372474.1\|7084102_7084444_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|377712
NZ_CP029361.1\|WP_044372476.1\|7080301_7081015_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NZ_CP029361.1\|WP_073778230.1\|7081034_7081451_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP029361.1\|WP_030807745.1\|7106029_7107004_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP029361.1\|WP_073778533.1\|7084473_7085511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP029361.1\|WP_030807765.1\|7091649_7092066_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP029361.1\|WP_044372473.1\|7086033_7087332_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029361.1\|WP_030807787.1\|7081628_7082462_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP029361.1\|WP_044372477.1\|7079442_7080237_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP029361.1\|WP_030807751.1\|7103103_7104186_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NZ_CP029361.1\|WP_044372475.1\|7082519_7083623_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP029361.1\|WP_010061749.1\|7083754_7084030_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP029361.1\|WP_044372464.1\|7104320_7106033_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP029361.1\|WP_044372472.1\|7087351_7088368_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029361.1\|WP_044372468.1\|7092296_7095659_+\|glycoside-hydrolase-family-2	unknown	unknown	gnl\|CDD\|236657
NZ_CP029361.1\|WP_078955563.1\|7095914_7097558_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|312032
NZ_CP029361.1\|WP_030807768.1\|7089184_7091554_-\|ATP-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|224054
NZ_CP029361.1\|WP_044372466.1\|7097677_7100029_-\|glycoside-hydrolase-family-2	unknown	unknown	gnl\|CDD\|377497
NZ_CP029361.1\|WP_044372465.1\|7100088_7102536_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369609
NZ_CP029361.1\|WP_030807743.1\|7107000_7108050_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093

Protein	Function_ID	Function_description	E-value
NZ_CP029361.1\|WP_044372474.1\|7084102_7084444_+\|DUF1232-domain-containing-protein	gnl\|CDD\|377712	pfam06803, DUF1232, Protein of unknown function (DUF1232). This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.	0.00522993
NZ_CP029361.1\|WP_044372476.1\|7080301_7081015_+\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	1.99754e-51
NZ_CP029361.1\|WP_073778230.1\|7081034_7081451_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	1.99263e-11
NZ_CP029361.1\|WP_030807745.1\|7106029_7107004_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	5.91359e-67
NZ_CP029361.1\|WP_073778533.1\|7084473_7085511_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.757e-07
NZ_CP029361.1\|WP_030807765.1\|7091649_7092066_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	3.68986e-16
NZ_CP029361.1\|WP_030807787.1\|7081628_7082462_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.18606e-07
NZ_CP029361.1\|WP_044372477.1\|7079442_7080237_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.29084e-60
NZ_CP029361.1\|WP_030807751.1\|7103103_7104186_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	8.34156e-112
NZ_CP029361.1\|WP_044372475.1\|7082519_7083623_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.60019e-39
NZ_CP029361.1\|WP_010061749.1\|7083754_7084030_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	4.68031e-28
NZ_CP029361.1\|WP_044372464.1\|7104320_7106033_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP029361.1\|WP_044372472.1\|7087351_7088368_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.22793e-107
NZ_CP029361.1\|WP_044372468.1\|7092296_7095659_+\|glycoside-hydrolase-family-2	gnl\|CDD\|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	3.05841e-35
NZ_CP029361.1\|WP_078955563.1\|7095914_7097558_+\|alpha/beta-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.74123e-19
NZ_CP029361.1\|WP_030807768.1\|7089184_7091554_-\|ATP-transporter-ATP-binding-protein/permease	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.66746e-68
NZ_CP029361.1\|WP_044372466.1\|7097677_7100029_-\|glycoside-hydrolase-family-2	gnl\|CDD\|377497	pfam05270, AbfB, Alpha-L-arabinofuranosidase B (ABFB) domain. This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant-cell-wall poly-saccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyzes 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains.	3.88483e-62
NZ_CP029361.1\|WP_044372465.1\|7100088_7102536_-\|hypothetical-protein	gnl\|CDD\|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	2.44343e-60
NZ_CP029361.1\|WP_030807743.1\|7107000_7108050_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.45545e-75

>NZ_CP029361.1|WP_044372472.1|7087351_7088368_-|serine/threonine-protein-kinase
MAPPPPPSHDAGVPTGREDDLVGKRIASYLVEAEIGRGGMAVVYRAKDLRLDRIVALKLLAPELARNDTFRQRFTHESRVAAAIDHPHIVPVFEAGETEGLLYIAMRFVAGADLRVLIDRRGPLDLTAAVRIAAQVASALDAAHDHDLVHRDVKPGNILVAAGTDSDHPEHVYLTDFGLTKKSLSLTGFTTVGQFVGTLDYVAPEQISGRPVDGRCDVYSLACVVQETLTGAPPFQRDDDMALLWAHQYDPPTPPSGLRPGLPATVDGVLAKALAKSPEDRYETCLRFVAALRAAAAGIGPGEHPPTRVDAPAGSWSATPEPPPAPPRWAAPVFPGTG
>NZ_CP029361.1|WP_044372473.1|7086033_7087332_+|hypothetical-protein
MNVRASNEENTARTPHGWRDALLTVLTGVLAMVVTAALGLWAAGATGLPGGAFPAVVAAVVVMAAGGSVGLSGDAGSLVGTQADLSVLPLSVTLVGALLVARGFLRPLHHRAVAGGRELAGWAGRVAALWIVALIVLSLIARHTFTLSAEDLTGSEAGDLLGEDPKIGFRAEIPLTLVFGLLWLAGVLVLALIVSRRAPLPARLLRFQEAVRPAAFAMVVLLLACVVLGVLAGIIVMITRGHPAETAAVLLLGLPNLVWLALTLGLGASWEGKVEGPFGLPMPQVLDTVLRTPDLSTLNLSTLAEQDGRVRWLVVVVAVLVLAAAFLMAARSPARTRLWQHAVHMAVALTLTVLFICLTARISAHYGLSLLGLGDLGGGLGGEVSLRAKLWTALGFAVLWGLVTGFLGGLAATRVHRRGEVVEPEAGPGPGA
>NZ_CP029361.1|WP_073778533.1|7084473_7085511_-|hypothetical-protein
MVLVVVLTRPEGGGGSKEGGEVFLQAAGESGPDPFTESTANDDAPAPGTASPSVAPSPSKTGAQVTRGVDGAAPGLYGGTQKIASCDVEQQVKVLQAAPDKNRAFASVQDIEPSAVPGYLRGLTPVTLRMDTRVTNHGYRDGEANAYQAVLQAGTAVLVDDRGVPRVRCACGNPLLPPVAQEDPRQTGKAWPGYRASGVVVVEPSGKPVKEFVMVDPENGDWFKRPAGDTGDGDKKTDPPKNASESPCPPGSDPCPTSSGATTPSEPAPDDRTSQPGEDPATSEPPPDDPATSEPPPDDPGTEPAPEDPPGSPDSQSAPQPPAPDTGAPQEPGAGTPLPGAPAFG
>NZ_CP029361.1|WP_044372474.1|7084102_7084444_+|DUF1232-domain-containing-protein
MDTTAWLVLGAVAALIMLALAVVLLVRVFRARKLLVDAGVPLRSKALVWAAVIYTVSPVDLLPDPVYLDDIGFLLVALRSLHSAAAAAGVRTGTSTRAKTPAAPVERRPDAVG
>NZ_CP029361.1|WP_010061749.1|7083754_7084030_+|WhiB-family-transcriptional-regulator
MSSTENWRLHAACREEDPDLFFPIGSTGPAVVQTEEAKAVCRTCPVQAACLEWALENGQDSGIWGGLSENERRALKRRSRRRAEARGRGAA
>NZ_CP029361.1|WP_044372475.1|7082519_7083623_+|serine/threonine-protein-phosphatase
MVQLRRAKWIPLGVIVLGVVLDLVTPTDVTSAPLLMAAPVAAAPLLSLRGIIAIGALAMAVHAVLAWHDGTFGWQRGVANQLTLLAVTVLAVLINRSLEGRDARTRRARHIAAVAQSAVLPRPPSRLGELRIAARYVPAEDEAMIGGDLYVVQETPHGVRVMVGDVRGKGLGAVSAVCADLGAFRYAADEAEDLPGLVAALERALMREGGRRGGQEQDEGFTTALIAEFADDLGTVRVVNRGHPPPVLLDAQGRATVLEPSEEAPPLGMSGLGTWSCPVDTFPFPPGATLICYTDGVTEARDESGAFYDASVRLPFLVHHRALIGYPASPAQILHLLIEDVGHHTGGRIQDDQALLALHRPPVPPHA
>NZ_CP029361.1|WP_030807787.1|7081628_7082462_+|helix-turn-helix-transcriptional-regulator
MRARSGPTVEHRVLAVRLRMLRERAGVSLRAAAEALDAHPATVRRIERAETGLDARQVGELLRCYGVPPAVAGPIMAGLAAANLPGWWHRWRDAMEAWQQDVIGVESSASLVRTWHPALVPELLRTPAYAAELYRTQYPGDSPARRERRVELLRERRRRLCERGAALWALLPAAALHTRVGDRETMEGQRAALAEAMREQRVTVQVVPLDHPPHPLTGVPPLHILRVPAPEIGDQAVLETPGVRVDLIDDPEAVMAHRIRLDAACAAAPGPGTPLPV
>NZ_CP029361.1|WP_073778230.1|7081034_7081451_-|ATP-binding-protein
MPGGVPEARHRVQEAMRAWGEPAERIEAAALIVTELVTNAVQHTSTRRIRCRLLRSTEGVRICVWNRGRGRARIPAPASPADSAGLPVGEAPTAGDLEADDALDRLSEDGRGLLLVDALAARWGTRAALAGRLVWADL
>NZ_CP029361.1|WP_044372476.1|7080301_7081015_+|ribonuclease-HI
MDESIIAACDGASKGNPGPAAWAWVAADAQGNPVRWEAGPLGTATNNVAELTALAELLESTDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSGGKPVANRELVTRIDALLADRSVTFRYVPAHQVNGDPLNAIADQAASEVAVTQLPAGTAHGATALPVPAPARSTKGGTEASGAAGGAKGRSAGGASRSGRSTGTIKARFAGRCHCGKPYAAQEPIAKNPNGWGHPECRTAPA
>NZ_CP029361.1|WP_044372477.1|7079442_7080237_+|SDR-family-oxidoreductase
MRIDLTGRNAVVTGSSQGIGLAIATGLAGAGAGVVLTGRTQGRLDEAARSVRGAVPDTSVATVACDLTTEEGAELLYAAVPAADILVNNLGIFGSRPPLEITDAEWKTYFDTNVLSAVRLIRHYLPGMTGQGWGRVLNIASDSAIVIPAEMIHYGMSKTALLAVSRGFAKEAAGTGVTVNSVIAGPTHTGGVEDFVYELVDKELPWDEAQREFMRLHRPQSLLQRLIEPEEIANLVVYLSSAQASATTGAAVRVDGGYVDSILP
>NZ_CP029361.1|WP_030807768.1|7089184_7091554_-|ATP-transporter-ATP-binding-protein/permease
MGERPATPTAPELVLETDLGSTVMSPSRDYHVGRDPGSDIVIDDDRVSWHHAVLHPEDGHWTLEDEDSTNGTYTAGRRIHASDVGAGSEIRFGNPSDGPRAVLLGREPPSPAATPSADRPSAVSMPAATGTFRQPTTVRPLPARTVRIGRDAGNDLVIDDLVVSRHHAELRALADGTYEIVDLGSHNGTFLNGQPVARGPVGPGDIVGIGHSAFCLVGDSLQEFVDTGEVSLDVQDLEVTVGRAGKGGKTLLDKVSFPVGEKCLLGVVGPSGAGKSTLLNALTGQRPADRGTVLYDGRDLYRDFAELRQRIGLVPQDDILHAQLTVRKALGYAAELRFPQDTAKAERQARVTEVIQELGLEQRADQPIHSLSGGQRKRVSVALELLTKPSLLFLDEPTSGLDPGMDRSVMHMLRGLADDGRTVIVVTHSVLSLEVCDRLLVLAPGGRIAYYGPPEDALAFFGFEEWPEAFEAFENDRDRDWAATYAGSPFRRQYIDNATAQPHLPPAAPGAMVAPPPKTRNWGAQLNTLVRRYASALSADRTFLIIMIALPFVMGAMARALAGSRLTQETAMNALLILCVGGVLTGAANAVRELVKERVIYQRERAVGLSRSAYLMSKIVVLGTITVLQAVVLTLVGLVGVDLGAPGGEGVFLPPLVEITLAVALLSFTAMMLGLLVSALVRKEEVTMPLLVLLAIVQVVFCGALLKLHGVPGVEQLSWLVPSRWALGAMAGTIDLARIVPGELTSDPLFEHAAGIWLLNMGMMVVLSLLFGYVVAKLLRRREPAVMRK
>NZ_CP029361.1|WP_030807765.1|7091649_7092066_-|ATP-binding-protein
MNDRILMTFSPDGETRTDFVCRPEKAADARDAVSAFVARLHPAPNSHMVQNLLILVSELVTNAVRHAGAVTALWLTADRRGVHVRVTDPSPAHPQDRTPDLTGRAGGFGWPMVQRLAQEVRVRQTVGGGKVILATVPR
>NZ_CP029361.1|WP_044372468.1|7092296_7095659_+|glycoside-hydrolase-family-2
MFDYVQCLAGWRHPRLFDEDDALRRQHPRPRALFRALTCAAALLIPVGATLVPTAAAAPAVPAEVTAKAFTAEDPVTDVRGLKGEYFGMSAPGARDFAELGATTLDPDINFPGLTGTFESATGKTEHSTARWTGQIEAPETGEYTFSAIGDNGFRLYLDGNVVIDHWEPDWDKEQRSEPISLKAGEKRDFKLEMFQDTGGASMFLRWEADGLKKQIVPESAFTPPADFEVYPVALSVAQNGKRLQATFRDRVADWRKVKEHLKIEVDTSPMPVKSVNRASDNPRALVIDLAAPVQKDQRVKVAYDGKGGLKSGSETVPEIGRTAKNLSTHRLTTPWGDKLDKNHPLPEYPRPQQVRDQWKNLNGPWEFAGATEGEQPVFGKKLDEKIIVPFPVESQLSGLERDEDHMFYRKLVTVPKNWSISKGGKGASGKDKRLKLNFDAVDYRSTVWVNGTKVAEHTGGYTGFTADITDALKGNGPQEIVVAVTDKTGPNQPKGKQSTNPGGIVYTPTSGIWQTVWMEPVAPAAIDSLTTTPDIDTGRLAVTVNSAKASADARITAVARDRKGKVVGTVSGPANRKLSLQLKNQHLWSPDDPYLYDLDVSLTDGRSKDSVESYFGMRQLKVDKVGGYQKLVLNGKPFFSLAMLDQGFWPDGLYTQPSDAALTFDLKAQKDLGFNAVRKHIKVEAPRWYYHADRLGLLVWQDFVNADIDNDAGKNAFLTQGKELMKQFHNYPSISGWIVFNEGWGEWDRTETGKIAEDVKALDPSRVVNAHSGVNCCASKGDSGKGEIIDHHDYVNNDPAFPDEHRAAMDGEHGGFTLRTPGHMWPGAPANIYSGVADKAALTAKYVDNTRTYYLAAAGAELSGSVYTQVSDLENELNGLWTYDRREIKVDPKKVREINRQVIAAGANAGERDELKGGGSWSLDENKGTAARDSGPNKAHLTLEGGSSWGPGVTGSALKFDGEGSYAQSAGPVVDTTKDYTVSAWASLDTVPGNYATVVSQDGRRTENPFYLQYGQGAFAFSTPGGKRARLEITPETGKWYHLVGVRKGDAITLYVDGKPAATAEAGPADVSTGPLSVGRARYDGAEVDFWNGSVDQVEVYDKALTAEEVSALHGRQKP
>NZ_CP029361.1|WP_078955563.1|7095914_7097558_+|alpha/beta-hydrolase
MAVSALATLAPAFAASTATAAPAAAPSAGTPSAVSSPAAKSVLDRYAKQKPAWKRCDAETSAAYQCATVKVPLDYRKPGGKRIDLAISRIRTAEPGKRRGILLSNPGGPGGEGLWMPMMMKEELPKSVLKSYDLVGFDPRGVGRSSPVSCNLTPQQEKWLRPYKAETYAKDVAWARRVADKCRKKMGDRLPHITTRNTARDMDLVRAILGEKKISYVGYSYGTYLGAVYAQLFPARAERFVLDSAVDPKRAWRGMIQWWAEGAEPAFDRWTEWAAARSKTYGLGDTPKKVDRTFWDLVARADKDPIEVDGRPTGGDDIRQGMRALSFTPQSASEAVVELKKAAAGKPASARKLARITEGGGTPAPEWAGKAALAAETPADNMTASFWAVVCGDNSAVWSRDPETYRRDAIEDKGRYPLFGDFASSIKPCAFWGKSAEPATVVKNKVGSLVVQNEWDSQTPLPSGQALHAQLKGSKMVTVLGGEGHGVYPSGNACTDGAVNRYLATGKLPAKDVTCKATTASNAQARQNEKPDALPGSPVPERAPNRF
>NZ_CP029361.1|WP_044372466.1|7097677_7100029_-|glycoside-hydrolase-family-2
MRPAPAPRRRTWWRRLTATTGLLALVATALVGTGTAPAAAAPAAWEPKPAPMTTPWTNSVPVDKPLPEYPRPQLTRPDWTNLNGIWDFAVTGRDAGQPATFPEQIRVPFVAESALSGIQRRITENDKLWYKRTFTVPANWNNRRVKLHFGASDWQTTVRVNGTQVGAHKGGFDAFAYDITPQLNGGTNTVVVSVYDPSQTGGQAVGKQRINDVKPHPGGGIFYTAASGIWQTVWLEPVASAHITRLDMTPNLGNNTLRVKVQTGGAAGRSARITVSSGGTVVGTATGAVSGEISVPVPNPRLWTPEDPFLYDVKADLLDGSAVTDTVGSYTGMRSIGIAKVDNILRPVLNGKFVFQTGTLDQGYWPDGIYTAPSDAALKYDLQAHKDLGFNMVRKHIKVEPQRWFYWADKLGLLVWQDMPSMDTGKVPDGPARTQWEAEYRNIIDQHRSSPSVVMWVNQNEGWGQYDQARIADEVKAQDPSRLVNNMSGVNCCGSVDGGNGDVVDNHIYVGPGNTAPSATRAAVLGEFGGLGYKVPGHEWYPGGGFSYEDQPSLAALNNRFVGLLDAIRIGQLPAGLSASVYTEITDVENEANGLLTYDRQVVKVDTARVKAANQALIQASRNPAPPVNLPTGQNKSLRVTTPGHTTKHLRHYDGLAFTEVVNSGSPAVLKADATWKIVTGLANSNCYSFESRNYPGEFLRHREFRVRRDADDNSALFKADATWCAVAGNGGVRFTSANLPGSYLRHIDSEVWLATPGGGQPFDSPALFTEDTTWAVDAPWTP
>NZ_CP029361.1|WP_044372465.1|7100088_7102536_-|hypothetical-protein
MPLNRRQLITTAAATAVVTGVTSRWATAATPDRHRIPAARGGHYSPNAAPLHPTAFLKLPPGKVTAHGWLAGQLKLQLEGLCGRYEEFSHFLAFTATGWVRPDRGGWEEVPYWLRGYADLAIVTGDATALATTHRWMDAILATGQSDGFFGPKALRTSLNGGPDFWPFLPLIQALRSWQEYTEDNRIIPFLSRFFRYMNAQGPGAFDTSWIALRWGDGLDSVMWLYNRTGDAFLLDLVDKIHRYGADWGDNLVNPHNVNIAQGFREPAQFALRSGSATDTRDTYGTYAKAMDAYGQFPGGGFGGDENARPGHGDPRQGFETCGIVEFMASHQLLTRITGDPLWADRCEELAFNSLPASLDPSGKAVHYITCANSVDLDNVPKRDRQFQNPFAMLAYLPGVDQYRCCPHNYGMGWPYFTEELWLATPDGGLAAAMYAPSEVTAKVADGTEVTFVEETGYPFTDTVTLSLTAPKPLAFPLVLRIPAWCAEPDIRVNGQRVAAPAGPAFTRIERTWSSGDRITLRLPQRTTVRTWAQNHDSVSVDHGPLTYSLRIGEEYERIGGSDAFPEYAVHATSPWNYGLVLDTARPAASLRRRPTGRAPGDNPFTLDGTPLTMTARARRIPEWTADDEHVVGPLQPSPARSTEPVEEVTLVPMGAARLRITSFPTAAPDAEPWLADRWYRIANRHSGKVLGVDGMSTANSAHVVQFGDTGTADHLWRLVANGDGWYRIRNRHSGKVLGVDLMSTANSAHVVQFDDNDTADHLWQLVPDGGGWYRIRNRNSDKVLGVDGMSTTDSAHVVQYDDNGTADHLWRLLL
>NZ_CP029361.1|WP_030807751.1|7103103_7104186_+|ABC-transporter-substrate-binding-protein
MMIQRRSRTLAVACVLAATTLAAAGCAKSETSNNAGGDSSQAAQEAKTPETSSGSGCTLETYGAPKLDLKNAVVGFSQSEKEANPFRIAETQSIKDEAKKIGVKKLLTTNAQSQLSKQISDIQDMLSQGAQFLIVAPLNSDGLEPALKAAAAKKVPVLTIDRKVNSTACKDYVAFLGSDFVEQGKRAADAMIKVTGGKGKVAILLGASGNNVTTDRTKGFVDQVKAEAPGLEIVAQQTGEFARDKGQQVMEQLIQSKPDITAVYAENDEMGLGAVTALKAAGKKPGEDVKIVSVDGTRNAVQALVNGEYNAVIESNPRFGPLAFATAQKFYAGEEIPENVIITDREYDEANAKESLNGAY
>NZ_CP029361.1|WP_044372464.1|7104320_7106033_+|sugar-ABC-transporter-ATP-binding-protein
MAPTHATPPHPETAGAGAAVAEPVLEARSVSKRFPGVVALDDVSFALRAGEVHALVGENGAGKSTLIKVLTGVYQSDEGEVRVSGEPVRLARPFEAQQAGISTIYQEVNLVPLMSVARNIFLGREPKNRFGLIDFPRMNRETTELLDGFGVRVDPKRPLHTLGIGTQQMVALARAVSVQAQVVIMDEPTSSLEPREVETLFRVIENLRGQGIAVLYVSHRMDELYRICDRVTVLRDGRHIHTGELSPLERMQLVSMMLGRDMAEVRSDGLTGFAAEGHDAARTPVLTATGLDRRHQLHDISVELYAGEVLGLGGLLGSGRSETAKALTGALPLDGGEITVDGKRIGRPTPAAAIRAGISMLPEDRKAEGIVPGLSVRENIVLAAMPRLSKAGIVSRAKQDHIVDIFMKRLRIKASSPEQKVGELSGGNQQKVLLARWLCLEPKVLLLDEPTRGIDVGAKAEVQSLIDELAREGLAVLLISSDIEELIEGADRIVVLRGGAVAGELAGDEVDESRLLEVLADHTPGDHTPGAVPADRTPHAGRSDRTPDAVPADRTPEPGGKVPAGQEDPR
>NZ_CP029361.1|WP_030807745.1|7106029_7107004_+|ABC-transporter-permease
MTTQATLPRPAKPLARLRDPAWYQEYGVYAAVAVVLLFNALFTEHFMTADNLRTQLVQVAPIVIVALGMALVIGTEGIDLSVGSTMALAAALLPLYLGYGLVPALLIALLAGAVVGAINGTLVSLVGLQPIVATLALFVGGRGLALVMADGQLKQIVNPDILALGTGSFLGIPTVVLIAGVLAVAVAFLVQRTTFGRQIVAIGGNRSASALSGLPVKRVLIGVYILCGVMAALAGILATARLTASDPSSLGTLMELSAITAVVVGGTPLNGGSIRVLGTVAGALLMQLLRATLVKHDLPDSTAQIAQAAIIIAAVYVARERRSR
>NZ_CP029361.1|WP_030807743.1|7107000_7108050_+|ABC-transporter-permease
MNKTTPATVPAAEAPAPLKSAPSRPEPRPERSTGSRIGELVQRQGVLAVLLTVILIASFVYPTFASLDNARGVTVQASFLAIVALGMTLVIITGGIDLSVGSVFALGGVLAAWASQWGFFAALLVPLVVCGAIGLVNGLLIARANMAPFIVTLASLLAARGMLLAFTDEGATTYLVPKDSAFAELGQGSVWGFGYPILIALALFGAGGLLLQRTSFGQTLFAVGGSSDAATLMGLPVARTKILVYTLSGLLAGLAGALNAARLSSGVTIVGVGMELDAISAVVIGGTLLIGGAGSISGTLWGVLLLAVIQNLINQIGSLNSSYQSVVSGGFLIVVVVAQRYLARSRRTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029361_9	9.2\|5395098\|38\|NZ_CP029361\|CRT	5395098-5395135	38	NZ_CP029361.1	5394825-5394862	1	0.974
NZ_CP029361_9	9.2\|5395098\|38\|NZ_CP029361\|CRT	5395098-5395135	38	NZ_CP029361.1	5395185-5395222	1	0.974
NZ_CP029361_7	7.1\|4235782\|15\|NZ_CP029361\|CRISPRCasFinder	4235782-4235796	15	NZ_CP029362.1	123004-123018	2	0.867

1. spacer 9.2|5395098|38|NZ_CP029361|CRT matches to position: 5394825-5394862, mismatch: 1, identity: 0.974

caggaggccaaggagaaggaggcggagcagaagcaggc	CRISPR spacer
caggaggccaaggagaaggaggcggagcagaagcaagc	Protospacer
***********************************.**

2. spacer 9.2|5395098|38|NZ_CP029361|CRT matches to position: 5395185-5395222, mismatch: 1, identity: 0.974

caggaggccaaggagaaggaggcggagcagaagcaggc	CRISPR spacer
caggaggccaaggagaaggaggccgagcagaagcaggc	Protospacer
*********************** **************

3. spacer 7.1|4235782|15|NZ_CP029361|CRISPRCasFinder matches to position: 123004-123018, mismatch: 2, identity: 0.867

cgcggaacgctgctg	CRISPR spacer
cgcggaactcggctg	Protospacer
******** * ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	KT716399	Pseudomonas phage POR1, complete genome	6459-6481	1	0.957
NZ_CP029361_1	1.3\|413585\|22\|NZ_CP029361\|CRISPRCasFinder	413585-413606	22	NZ_CP011869	Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence	54518-54539	2	0.909
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP018077	Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence	96653-96675	2	0.913
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	MN857473	Teseptimavirus S2B, complete genome	30216-30238	2	0.913
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1096378-1096400	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	215874-215896	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	595233-595255	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1408959-1408981	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1298155-1298177	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	126130-126152	3	0.87
NZ_CP029361_9	9.3\|5395158\|23\|NZ_CP029361\|CRT	5395158-5395180	23	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	453382-453404	3	0.87
NZ_CP029361_4	4.1\|3184755\|25\|NZ_CP029361\|CRT	3184755-3184779	25	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	434181-434205	4	0.84
NZ_CP029361_4	4.1\|3184755\|25\|NZ_CP029361\|CRT	3184755-3184779	25	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	434181-434205	4	0.84
NZ_CP029361_4	4.1\|3184755\|25\|NZ_CP029361\|CRT	3184755-3184779	25	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	434193-434217	4	0.84
NZ_CP029361_4	4.1\|3184755\|25\|NZ_CP029361\|CRT	3184755-3184779	25	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	434214-434238	4	0.84
NZ_CP029361_4	4.1\|3184755\|25\|NZ_CP029361\|CRT	3184755-3184779	25	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	434180-434204	4	0.84
NZ_CP029361_4	4.3\|3184855\|25\|NZ_CP029361\|CRT	3184855-3184879	25	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	662211-662235	4	0.84
NZ_CP029361_4	4.3\|3184855\|25\|NZ_CP029361\|CRT	3184855-3184879	25	NZ_CP011523	Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence	31939-31963	4	0.84
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	515307-515332	4	0.846
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	253828-253853	4	0.846
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	19841-19866	4	0.846
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP041605	Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence	65522-65547	5	0.808
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1305048-1305073	5	0.808
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1085139-1085164	5	0.808
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_CP026653	Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence	46057-46082	5	0.808
NZ_CP029361_9	9.1\|5395050\|26\|NZ_CP029361\|CRT	5395050-5395075	26	NZ_LR594664	Variovorax sp. RA8 plasmid 3	417600-417625	5	0.808
NZ_CP029361_3	3.1\|2963801\|29\|NZ_CP029361\|CRISPRCasFinder	2963801-2963829	29	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	249055-249083	6	0.793
NZ_CP029361_3	3.1\|2963801\|29\|NZ_CP029361\|CRISPRCasFinder	2963801-2963829	29	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	114084-114112	6	0.793
NZ_CP029361_3	3.1\|2963801\|29\|NZ_CP029361\|CRISPRCasFinder	2963801-2963829	29	MN234166	Gordonia phage ASerpRocky, complete genome	13004-13032	7	0.759
NZ_CP029361_3	3.1\|2963801\|29\|NZ_CP029361\|CRISPRCasFinder	2963801-2963829	29	NC_019790	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence	36959-36987	8	0.724
NZ_CP029361_3	3.1\|2963801\|29\|NZ_CP029361\|CRISPRCasFinder	2963801-2963829	29	MN694573	Marine virus AFVG_250M323, complete genome	19985-20013	8	0.724
NZ_CP029361_10	10.1\|5888123\|34\|NZ_CP029361\|CRISPRCasFinder	5888123-5888156	34	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	25827-25860	8	0.765
NZ_CP029361_4	4.2\|3184799\|37\|NZ_CP029361\|CRT	3184799-3184835	37	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	2225-2261	10	0.73
NZ_CP029361_4	4.2\|3184799\|37\|NZ_CP029361\|CRT	3184799-3184835	37	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	35057-35093	10	0.73
NZ_CP029361_9	9.2\|5395098\|38\|NZ_CP029361\|CRT	5395098-5395135	38	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	76347-76384	10	0.737

1. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to KT716399 (Pseudomonas phage POR1, complete genome) position: , mismatch: 1, identity: 0.957

gcgaaggaagccgaggccaaggc	CRISPR spacer
gcgaagaaagccgaggccaaggc	Protospacer
******.****************

2. spacer 1.3|413585|22|NZ_CP029361|CRISPRCasFinder matches to NZ_CP011869 (Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence) position: , mismatch: 2, identity: 0.909

cggggtgcgtcggccggcccgg	CRISPR spacer
gggggtgcgtcggccggcccgt	Protospacer
 ********************

3. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP018077 (Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.913

gcgaaggaagccgaggccaaggc	CRISPR spacer
gccaaggaagccaaggccaaggc	Protospacer
** *********.**********

4. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to MN857473 (Teseptimavirus S2B, complete genome) position: , mismatch: 2, identity: 0.913

gcgaaggaagccgaggccaaggc	CRISPR spacer
gcaaaggaggccgaggccaaggc	Protospacer
**.*****.**************

5. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

6. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
ctgacggaagccgaggccaaggc	Protospacer
 .** ******************

7. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

8. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

9. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

10. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

11. spacer 9.3|5395158|23|NZ_CP029361|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 3, identity: 0.87

gcgaaggaagccgaggccaaggc	CRISPR spacer
cggaaggaagccgaggccgaggc	Protospacer
  ****************.****

12. spacer 4.1|3184755|25|NZ_CP029361|CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgaagcaggtccggccccgcgcagc	CRISPR spacer
gcaagcagttccggccgcgcgcagc	Protospacer
  ****** ******* ********

13. spacer 4.1|3184755|25|NZ_CP029361|CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 4, identity: 0.84

tgaagcaggtccggccccgcgcagc	CRISPR spacer
gcaagcagttccggccgcgcgcagc	Protospacer
  ****** ******* ********

14. spacer 4.1|3184755|25|NZ_CP029361|CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgaagcaggtccggccccgcgcagc	CRISPR spacer
gcaagcagttccggccgcgcgcagc	Protospacer
  ****** ******* ********

15. spacer 4.1|3184755|25|NZ_CP029361|CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgaagcaggtccggccccgcgcagc	CRISPR spacer
gcaagcagttccggccgcgcgcagc	Protospacer
  ****** ******* ********

16. spacer 4.1|3184755|25|NZ_CP029361|CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgaagcaggtccggccccgcgcagc	CRISPR spacer
gcaagcagttccggccgcgcgcagc	Protospacer
  ****** ******* ********

17. spacer 4.3|3184855|25|NZ_CP029361|CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

cgaagctggtccggccccgcgcgaa	CRISPR spacer
cgaagccggtccggccgcgcgcgtt	Protospacer
******.********* ******

18. spacer 4.3|3184855|25|NZ_CP029361|CRT matches to NZ_CP011523 (Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

cgaagctggtccggccccgcgcgaa	CRISPR spacer
cgaaggtggtccggccccgggcggc	Protospacer
***** ************* ***.

19. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.846

caggccagggccgaacaggaggccaa	CRISPR spacer
ccggccagcgccgaccaggaggccat	Protospacer
* ****** ***** **********

20. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 4, identity: 0.846

caggccagggccgaacaggaggccaa	CRISPR spacer
ccggccagcgccgaccaggaggccat	Protospacer
* ****** ***** **********

21. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 4, identity: 0.846

caggccagggccgaacaggaggccaa	CRISPR spacer
ccggccagcgccgaccaggaggccat	Protospacer
* ****** ***** **********

22. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP041605 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence) position: , mismatch: 5, identity: 0.808

caggccagggccgaacaggaggccaa	CRISPR spacer
aaggccagggccgaactggaggctgc	Protospacer
 *************** ******..

23. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 5, identity: 0.808

caggccagggccgaacaggaggccaa	CRISPR spacer
gaggccgaggccgaacaggaggccgg	Protospacer
 *****..****************..

24. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

caggccagggccgaacaggaggccaa	CRISPR spacer
acggccagggcggaacaggtggccag	Protospacer
  ********* ******* *****.

25. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_CP026653 (Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

caggccagggccgaacaggaggccaa	CRISPR spacer
aacgccagggccgaactggaggccgc	Protospacer
 * ************* *******.

26. spacer 9.1|5395050|26|NZ_CP029361|CRT matches to NZ_LR594664 (Variovorax sp. RA8 plasmid 3) position: , mismatch: 5, identity: 0.808

caggccagggccgaacaggaggccaa	CRISPR spacer
atcgccaggctcgaacaggaggccaa	Protospacer
   ****** .***************

27. spacer 3.1|2963801|29|NZ_CP029361|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 6, identity: 0.793

aatcacgcagcctcgccgccctcccgagg	CRISPR spacer
catcacgcaacctcgccgccctggagcgg	Protospacer
 ********.************   * **

28. spacer 3.1|2963801|29|NZ_CP029361|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 6, identity: 0.793

aatcacgcagcctcgccgccctcccgagg	CRISPR spacer
catcacgcaacctcgccgccctggagcgg	Protospacer
 ********.************   * **

29. spacer 3.1|2963801|29|NZ_CP029361|CRISPRCasFinder matches to MN234166 (Gordonia phage ASerpRocky, complete genome) position: , mismatch: 7, identity: 0.759

aatcacgcagcctcgccgccctcccgagg	CRISPR spacer
tcgcgcgcagcctcggcaccctcccgagc	Protospacer
   *.********** *.**********

30. spacer 3.1|2963801|29|NZ_CP029361|CRISPRCasFinder matches to NC_019790 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence) position: , mismatch: 8, identity: 0.724

aatcacgcagcctcgccgccctcccgagg	CRISPR spacer
tttcacgcagcctcgccgacctcgtccgc	Protospacer
  **************** **** .  *

31. spacer 3.1|2963801|29|NZ_CP029361|CRISPRCasFinder matches to MN694573 (Marine virus AFVG_250M323, complete genome) position: , mismatch: 8, identity: 0.724

aatcacgcagcctcgccgccctcccgagg	CRISPR spacer
gtgagcgcagcctcgccgcgctcccgggc	Protospacer
.   .************** ******.*

32. spacer 10.1|5888123|34|NZ_CP029361|CRISPRCasFinder matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 8, identity: 0.765

attggccgcccggtccgaggcctcgggtacaggc	CRISPR spacer
catggccgcccggtccgtgccctcggggagcagc	Protospacer
  *************** * ******* *  .**

33. spacer 4.2|3184799|37|NZ_CP029361|CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 10, identity: 0.73

cgaagcgaggccgccccggggtccggccccgcgcacg	CRISPR spacer
cggccgccggccgcaccgggggccggccccgcgccct	Protospacer
**.     ****** ****** ************ *

34. spacer 4.2|3184799|37|NZ_CP029361|CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 10, identity: 0.73

cgaagcgaggccgccccggggtccggccccgcgcacg	CRISPR spacer
cggccgccggccgcaccgggggccggccccgcgccct	Protospacer
**.     ****** ****** ************ *

35. spacer 9.2|5395098|38|NZ_CP029361|CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 10, identity: 0.737

caggaggccaaggagaaggaggcggagcagaagcaggc--	CRISPR spacer
tggcaggccaaggagaaggaggccgag--gagaccgtccg	Protospacer
..* ******************* ***  **..* * *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6147347 : 6154170

Streptomyces_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030799558.1\|6147347_6148004_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.1e-09	29.7
WP_104011619.1\|6148003_6149317_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_030799564.1\|6149442_6150099_+	nicotinamide mononucleotide transporter	A0A0F6YPU8	Sinorhizobium_phage	1.3e-11	29.2
WP_030799567.1\|6150095_6151175_+	AAA family ATPase	A0A2K8HHU5	Bacteriophage	6.2e-30	30.9
WP_030799569.1\|6151171_6151936_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	1.5e-22	49.3
WP_044370382.1\|6151932_6152958_+	ADP-ribosylglycohydrolase family protein	A0A2D0ZND4	Rhodococcus_phage	6.3e-32	33.1
WP_029181953.1\|6153020_6153464_+	SRPBCC family protein	NA	NA	NA	NA
WP_044370384.1\|6153429_6154170_-	nucleotidyltransferase	A0A1J0GW18	Streptomyces_phage	7.8e-16	37.9