CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029465	Bacillus subtilis subsp. inaquosorum strain KCTC 13429 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,WYL,DinG,RT	0	1	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029465_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029465_1

1001205-1001312

Orphan

Consensus_repeat	Method
AAAACAAAACCAACAATCAGCTGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029465_1

>merge|NZ_CP029465|1|1001205-1001312|CRISPRCasFinder
AAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTTGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAAAAAACAAAACCAGCAATCAGCTGCTGG

>NZ_CP029465|1|1|1001205-1001312|CRISPRCasFinder
AAAACAAAACCAACAATCAGCTGCTGG	TCAAGGTCAATTTGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAA
AAAACAAAACCAGCAATCAGCTGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029465.1\|WP_003239687.1\|1001587_1001848_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP029465.1\|WP_003239703.1\|992982_993843_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP029465.1\|WP_003239699.1\|994075_995065_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP029465.1\|WP_003239707.1\|992060_992576_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|214600
NZ_CP029465.1\|WP_003223257.1\|1000030_1000255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029465.1\|WP_003239676.1\|1007149_1007623_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP029465.1\|WP_003239709.1\|991646_991916_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP029465.1\|WP_003239693.1\|998914_1000024_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|130156
NZ_CP029465.1\|WP_003239680.1\|1004426_1005488_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP029465.1\|WP_003239704.1\|992663_992996_+\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|227945
NZ_CP029465.1\|WP_003239651.1\|1016667_1017444_-\|sporulation-control-protein-Spo0M	unknown	unknown	gnl\|CDD\|226776
NZ_CP029465.1\|WP_003239678.1\|1005707_1006997_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_CP029465.1\|WP_003239674.1\|1008227_1008581_-\|YgzB-family-protein	unknown	unknown	gnl\|CDD\|371346
NZ_CP029465.1\|WP_003239683.1\|1002608_1004351_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP029465.1\|WP_003223285.1\|1007755_1008193_+\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_CP029465.1\|WP_080030861.1\|1017583_1017787_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029465.1\|WP_003239697.1\|995136_997722_+\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|226888
NZ_CP029465.1\|WP_003239685.1\|1001991_1002522_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP029465.1\|WP_003239690.1\|1000337_1001090_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP029465.1\|WP_003239695.1\|997714_998698_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899

Protein	Function_ID	Function_description	E-value
NZ_CP029465.1\|WP_003239687.1\|1001587_1001848_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.87436e-26
NZ_CP029465.1\|WP_003239703.1\|992982_993843_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.13273e-40
NZ_CP029465.1\|WP_003239699.1\|994075_995065_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.62301e-84
NZ_CP029465.1\|WP_003239707.1\|992060_992576_+\|SH3-domain-containing-protein	gnl\|CDD\|214600	smart00287, SH3b, Bacterial SH3 domain homologues.	4.53526e-12
NZ_CP029465.1\|WP_003239676.1\|1007149_1007623_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	3.57002e-86
NZ_CP029465.1\|WP_003239709.1\|991646_991916_+\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	1.44803e-41
NZ_CP029465.1\|WP_003239693.1\|998914_1000024_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|130156	TIGR01084, A/G-specific_adenine_glycosylase, A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY. [DNA metabolism, DNA replication, recombination, and repair].	2.02052e-154
NZ_CP029465.1\|WP_003239680.1\|1004426_1005488_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.2862e-91
NZ_CP029465.1\|WP_003239704.1\|992663_992996_+\|SdpI-family-protein	gnl\|CDD\|227945	COG5658, COG5658, Predicted integral membrane protein [Function unknown].	3.56698e-22
NZ_CP029465.1\|WP_003239651.1\|1016667_1017444_-\|sporulation-control-protein-Spo0M	gnl\|CDD\|226776	COG4326, Spo0M, Sporulation control protein [General function prediction only].	6.92966e-151
NZ_CP029465.1\|WP_003239678.1\|1005707_1006997_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_CP029465.1\|WP_003239674.1\|1008227_1008581_-\|YgzB-family-protein	gnl\|CDD\|371346	pfam11023, DUF2614, Zinc-ribbon containing domain. This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.	1.37964e-70
NZ_CP029465.1\|WP_003239683.1\|1002608_1004351_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP029465.1\|WP_003223285.1\|1007755_1008193_+\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.19115e-56
NZ_CP029465.1\|WP_003239697.1\|995136_997722_+\|YfhO-family-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
NZ_CP029465.1\|WP_003239685.1\|1001991_1002522_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.54037e-126
NZ_CP029465.1\|WP_003239690.1\|1000337_1001090_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	1.24786e-171
NZ_CP029465.1\|WP_003239695.1\|997714_998698_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	2.15201e-44

>NZ_CP029465.1|WP_003239690.1|1000337_1001090_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MEQNKCALVTGSSRGVGKAAALRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIEETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV
>NZ_CP029465.1|WP_003223257.1|1000030_1000255_-|hypothetical-protein
MYVGRDMSELNMVSKEDWKNSELAYFHHAFQQIMPYLNEEGQSKYRELTQEIEARGGMKRNEADYSHGTRVSYD
>NZ_CP029465.1|WP_003239693.1|998914_1000024_+|A/G-specific-adenine-glycosylase
MNVLEDKLKQKDIQQFRDDLISWFEREQRILPWREDQDPYKVWVSEVMLQQTRVETVIPYFLRFVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAVKEVKQEYGGIVPPDEKEFGGLKGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSIWDDIAKPKTRTIFEDAVRAFISKEKPSEFNQGLMELGALICTPKSPSCLLCPVQQHCSAFEEGTERELPVKSKKKKPGIKTMAAIVLTDEDGQVYIHKRPSKGLLANLWEFPNLETQKGIKTEREQLTAFLENECGIQADISDLQGVVEHVFTHLVWNISVFFGKVKQVSDTSELKKVTKEELEQFAFPVSHQKIWKMAVEAAVYSAAP
>NZ_CP029465.1|WP_003239695.1|997714_998698_-|metal-dependent-hydrolase
MDTGTHVVMGIALGGIATLDPVVGADPAMAHAVMIATLAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSVIIPAILYLFYPQADFLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGLINTFDPFIFISHLAAIAIWYAGGSPGITFLSLYIILAGYYMVRLIMQLRIKRKLHEMIHDEIESIIISPTMKFRQWRIAVTTAHAFYVGRSMEGHVVILDTFNRVPVPETEVMQAAKQDDNIAAFLSFSPVYRWEVDTFKDHYEVRFIDLRYRSKGHYPFVAIVHIGHDLTIRSSYTGWIFSEEKLQKKLKLGSI
>NZ_CP029465.1|WP_003239697.1|995136_997722_+|YfhO-family-protein
MKRKYVMIYAASLLASVLAHAFFVKEWTDSRYMTGPGDGLAQMIVFKKLLFEQYTHGNFFYNYSFGLGGGTFSQLGYYFSVSFLFLAVSAAVWLLQAVQLIGEANTLFWAESAVFISIFKLSVIIFTAASVFHYILKHRAASFTGAVLYGVSIIYFRHEAYWEFFTDTMIWLPLLVLGAEKIIRERRPAWFIIACSLTLINNFYFAYINLIFIGIYVLFRWLIRLDEHEEKRWIQCRMFLVSGIISFGISAAAFVPVVYGFLNNLRPPYSQKIEWLNFDDNILFSSRIIILPAAFLLFLFIVSFYKNRVFRLFAGLSLLFILLHFSPYAASVFNGFSAPQNRFEYVLAFTIAGAAAAGLSQLSELKRKELLPAAAVVLLLYLYHIQRYELDIWKPANESILLLLFLTIAALFAVAFAKKRATVAVYGVIILSSLFVANTYQKYTLSEGGGLDSVTKAYLTGEEYKGQESAELIKRLQKEDDDPLMRIDWMNGVRNNTPIIYGFNGFSAYSSILNKHLLTFYWNDLSIDMGRESVSRYASLGDRANLYSLLYGKYYLTEKTNEANVPYGFKKHLESEHYVVYENQYMLPFIKTADAIYSESELDKLPALAKEQAMLKGIVVADPSEKTEQAPKLANLIPKSDISAKHAQYQNGLLTVTGENGGELIITPKEASSAPGDYYVSFYLKSKAKDKGFTLKVNDYATTRKSNQSIYKTGVNDITIRVPKSGHISIKLPKGTYELRNIALYEENYQTLKSAALQNKTDKADNLKWDKNKLTFAYRLPKNQYIMLPIPYEKGWELKINGKPQTIEKADYAFIGFRAQKGDNHIELAYYPPYFKISALISLVSLLLAVLYIRRKKPGSK
>NZ_CP029465.1|WP_003239699.1|994075_995065_+|glycosyltransferase-family-2-protein
MKQGLISIIIPSYNEGYNVKLIHESLKKEFKSIHYDYEIFFINDGSVDDTLQQIKDLAAVCSRVKYISFSRNFGKEAAILAGFEHVQGEAVIVMDADLQHPTYLLKDFIKGYEEGYDQVIAQRNRKGDSPVRSLLSSLYYKFINKAVEVDLRDGVGDFRLLSRQAVNALLKLSEGNRFSKGLFCWIGFDQKIVFYENVERKNGTSKWSFSSLFNYGMDGVVSFNHKPLRICFYTGIFILLLSIIYIIATFVKILTNGISVPGYFTIISAVLFLGGVQLLSLGIIGEYIGRIYYETKKRPHYLIKEANIPNKDLPETNELKSVRRLTKMH
>NZ_CP029465.1|WP_003239703.1|992982_993843_+|alpha/beta-hydrolase
MDGVNCQFVKTNGITLHVAAAGPEDGPLIVLLHGFPEFWYGWKNQIKPLADAGYRVIAPDQRGYNLSDKPDGIDAYRIDTLRDDIIGLITQFTDEKAIVIGHDWGGAVAWHLASTRPEYIEKLIAINIPHPHIMKTVTPVYPPQWLKSSYIAFFQLPDIPEASLKENDYETLDKAIGLSIRPELFSSEDVSKYKEAWKQPGALTAMLNWYRALRKGSLSEKTTCETVPYRMIWGMEDRFLSKKLAKETERHCPNGHLIFVDEASHWINHEKPAIVNQLILEYLKKQ
>NZ_CP029465.1|WP_003239704.1|992663_992996_+|SdpI-family-protein
MAGLISGGLMVIAGILIKLFPPKSINSVYGYRTRRSMSDQRLWNEANRYSASLMIMSGLVIAALGLLLRSNLIILQLILLLAACVITFMLTEKRLKNMTHSQGGDMSGRS
>NZ_CP029465.1|WP_003239707.1|992060_992576_+|SH3-domain-containing-protein
MKKKQVLLALTAAAGLGLTATYSAPAAKAAPLHNISVSMPSSDSYIIKAGKLNVRTEPNHKGDILGTISSEQKVTVNGFANADWAQIQFKGKKAYISTHFLMKTASQAKTEKQTAFYAPTPENGKAKQLSSGTEVTILGWGFSENGGFDFTWAFVDYGGVKGYIHTKDLQI
>NZ_CP029465.1|WP_003239709.1|991646_991916_+|hypothetical-protein
MNTYIEKLTNLLLEKNDMISYIQAKTWVELLWSDFEATYAKAGHAYQGEKMTEKIVTQWIENYGGQLHLFQSSRDDVNDYLNQSRGLLH
>NZ_CP029465.1|WP_003239687.1|1001587_1001848_+|hypothetical-protein
MTEFEKLVSEQMKTMDKLLDLQSELDRCKQIEAELRHLERDARLLGIQNEIAVKRKHLADIQDMFQKQTEQVIRSYRSSEKPSSFV
>NZ_CP029465.1|WP_003239685.1|1001991_1002522_+|DUF402-domain-containing-protein
MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREPAICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILDEDEYDDHRKSMNYPKEIDSILRDYLNTLLHWIHQRQGPFAPEFVDMWYERYLRYTK
>NZ_CP029465.1|WP_003239683.1|1002608_1004351_+|ABC-transporter-ATP-binding-protein
MGVMKRYMQFVKPYKKQIFVTVLIGIVKFSIPLALPLLLKYVVDDIIQGGGTANDKTTSLFTIMAIMFALFLILRPPVEYYRQYFAQWTASKVLYDIRAKLFDHIQKLSLRFYANTRTGEVISRVINDVEQTKDFVITGLMNIWLDMLTILIVISIMLTLDIKLTLISIVLFPLYGISVKYFYGRLRRLTRERSQALAQVQGHLHERIQGMPVIRSFAIEDHEQAHFNEKNSHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPLTVGTMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKADQIRGEVEFQNVSFQYEKEKENILHDVSLKVNKGETVALVGMSGGGKSTLVSLIPRFYDVTTGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMGFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEVGTHDELMDYDSQYKHLFTIQNLS
>NZ_CP029465.1|WP_003239680.1|1004426_1005488_-|aromatic-acid-exporter-family-protein
MKLGARIFKTGIAITLALYLASWIGLPAPIFAGIAAIFAIQPSIYRSFLIIIDQVQANIIGAVIATVFGLIFGPSPIMIGLTAVIVITIMLKLKIEHTISIALVTVIAILESAGDDFLMFALVRTSTVILGVLSSFIVNLVFLPPKYETKLIHNTVENTEEIMKWIRLSMRQSTEHSILKEDIEKLKEKMIKLDQTYLLYKEERSYFKKTTYVKSRKLVLFRQAIITANRALDTLKKLHRLENDIYHMPEEFQETLTEELDYLLYWHERILMRFVGKIKPHDDADEEGIRYKQLLTKSFLKNQQNTDDELIDYNMLNIMASAVEYREQLEHLETLITSFQTYHPKDCEIETEE
>NZ_CP029465.1|WP_003239678.1|1005707_1006997_-|glutamate-1-semialdehyde-2,1-aminomutase
MHTKSIELHNEALEHIVGGVNSPSRSYKAVGGGSPVAMEKANGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITEAIKKAAENGVLYGTPTKHEVTFAKMLKEAIPAMDKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIANEVITVPFNDIESYKAALDKWGSEIAAVLVEPIVGNFGIVEPKEGFLEKVNELTHDAGALVIYDEVITAFRFMYGGAQDLLQVKPDLTALGKIIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASILSGIACLEVLKEEGVYEKLDHLGAMLEEGILQHAETHGITITVNRLKGALTVYFSDEKVENYEQAERSDGETFAKFFKLMLERGINLAPSKYEAWFITTAHTEQDIKDTLVAVEDAFKHLKN
>NZ_CP029465.1|WP_003239676.1|1007149_1007623_+|thioredoxin-dependent-thiol-peroxidase
MTIEIGQKAPDLELKGDHGETVTLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKFKEKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIERSTFLIDKEGRLVKEWRKVRVKDHVAEALQTLKDMSEK
>NZ_CP029465.1|WP_003223285.1|1007755_1008193_+|peroxide-responsive-transcriptional-repressor-PerR
MAAHELKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTSDHYHAICENCGKIVDFHYPGLDEVEQLAAHVTGFKVSHHRLEIYGVCQECSKKENH
>NZ_CP029465.1|WP_003239674.1|1008227_1008581_-|YgzB-family-protein
MAKYSSKINKIRTFALSLVFVGFIIMYIGIFFKESVLLSSLFMILGLLSIGLSTVVYFWIGMLSTKAVRVICPSCEKETKVLGRVDMCMHCREPLTLDKGLEGKEFDESYNKKKMSK
>NZ_CP029465.1|WP_003239651.1|1016667_1017444_-|sporulation-control-protein-Spo0M
MSFFKKLAASAGIGAAKVDTILEKDAYYPGEEVRGTVHVKGGKIAQDIRYIDLQLNTRYVIVKDDEEHRKYTTIHSFRVTGSFTIQPGEQHQFPFSFILPLDTPITVGKVEVAVVTDLDIQGGIDKSDHDRIFVEAHPWIESVLEAIENLGFRLNEADCEQAPYFQRRLPFVQEFEFIPTSGYYRQMLDELELIFLLDEDGLDIIFEVDRRARGLRGWLEEMYNDGEQLVRVRFSQSELEDAEGLEEVLEEILDQYAE
>NZ_CP029465.1|WP_080030861.1|1017583_1017787_+|hypothetical-protein
MEMNKESMVADELHRMFLAGELQITVEEDINNISERLRNGDLSLDRLSGEDTFIKETVNEALRRVEQ

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Crispr_ID: NZ_CP029465_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029465_2

3255600-3255707

Orphan

Consensus_repeat	Method
TGATGGGAATCGAACCCACGACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029465_2

>merge|NZ_CP029465|2|3255600-3255707|CRISPRCasFinder
TGATGGGAATCGAACCCACGACATCAGCTTGGAAGGCTGAGGTTTTACCACTAAACTACACCCGCAATTTTTATTTGGGGCGATTGATGGGAATCGAACCCACGAATG

>NZ_CP029465|2|2|3255600-3255707|CRISPRCasFinder
TGATGGGAATCGAACCCACGACAT	CAGCTTGGAAGGCTGAGGTTTTACCACTAAACTACACCCGCAATTTTTATTTGGGGCGAT
TGATGGGAATCGAACCCACGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029465.1\|WP_003242269.1\|3263895_3265425_-\|flotillin-lipid-rafts-scaffold-protein-FloT	unknown	unknown	gnl\|CDD\|225177
NZ_CP029465.1\|WP_003242270.1\|3263349_3263871_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029465.1\|WP_032732389.1\|3267295_3268504_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|341481
NZ_CP029465.1\|WP_003238071.1\|3242303_3244046_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
NZ_CP029465.1\|WP_003238068.1\|3239087_3240548_-\|o-succinylbenzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|235146
NZ_CP029465.1\|WP_032732388.1\|3265443_3265968_-\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|376684
NZ_CP029465.1\|WP_003242257.1\|3270191_3270734_+\|transcriptional-regulator-GbsR	unknown	unknown	gnl\|CDD\|224427
NZ_CP029465.1\|WP_032731948.1\|3244042_3245458_-\|isochorismate-synthase-MenF	unknown	unknown	gnl\|CDD\|224091
NZ_CP029465.1\|WP_003238074.1\|3246576_3247044_+\|TspO/MBR-family-protein	unknown	unknown	gnl\|CDD\|226007
NZ_CP029465.1\|WP_003242263.1\|3266629_3267208_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377051
NZ_CP029465.1\|WP_003242255.1\|3270942_3271488_+\|biofilm-surface-layer-protein-BslA	unknown	unknown	gnl\|CDD\|379999
NZ_CP029465.1\|WP_032732387.1\|3266135_3266624_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP029465.1\|WP_003238077.1\|3250906_3251938_-\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	unknown	unknown	gnl\|CDD\|273966
NZ_CP029465.1\|WP_003219322.1\|3240638_3241457_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP029465.1\|WP_003238078.1\|3251960_3253103_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179997
NZ_CP029465.1\|WP_003242259.1\|3268520_3269993_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143437
NZ_CP029465.1\|WP_003238070.1\|3241491_3242316_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP029465.1\|WP_003238073.1\|3245749_3246469_+\|yteA-family-sporulation-protein	unknown	unknown	gnl\|CDD\|274340
NZ_CP029465.1\|WP_003238079.1\|3253099_3254983_-\|1,4-alpha-glucan-branching-enzyme	unknown	unknown	gnl\|CDD\|273667
NZ_CP029465.1\|WP_003242272.1\|3262730_3263309_+\|energy-coupled-thiamine-transporter-ThiT	unknown	unknown	gnl\|CDD\|226377

Protein	Function_ID	Function_description	E-value
NZ_CP029465.1\|WP_003242269.1\|3263895_3265425_-\|flotillin-lipid-rafts-scaffold-protein-FloT	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	3.07593e-121
NZ_CP029465.1\|WP_003242270.1\|3263349_3263871_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.53352e-10
NZ_CP029465.1\|WP_032732389.1\|3267295_3268504_-\|choline-dehydrogenase	gnl\|CDD\|341481	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases, insect-type, or short-chain alcohol dehydrogenases, iron-containing alcohol dehydrogenases, among others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.	6.19062e-176
NZ_CP029465.1\|WP_003238071.1\|3242303_3244046_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
NZ_CP029465.1\|WP_003238068.1\|3239087_3240548_-\|o-succinylbenzoate--CoA-ligase	gnl\|CDD\|235146	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase.	0
NZ_CP029465.1\|WP_032732388.1\|3265443_3265968_-\|NfeD-family-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	0.000136749
NZ_CP029465.1\|WP_003242257.1\|3270191_3270734_+\|transcriptional-regulator-GbsR	gnl\|CDD\|224427	COG1510, COG1510, Predicted transcriptional regulators [Transcription].	1.81608e-70
NZ_CP029465.1\|WP_032731948.1\|3244042_3245458_-\|isochorismate-synthase-MenF	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.00923e-166
NZ_CP029465.1\|WP_003238074.1\|3246576_3247044_+\|TspO/MBR-family-protein	gnl\|CDD\|226007	COG3476, COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms].	1.23062e-39
NZ_CP029465.1\|WP_003242263.1\|3266629_3267208_-\|MOSC-domain-containing-protein	gnl\|CDD\|377051	pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulfur-metal clusters.	5.47913e-07
NZ_CP029465.1\|WP_003242255.1\|3270942_3271488_+\|biofilm-surface-layer-protein-BslA	gnl\|CDD\|379999	pfam17735, BslA, Biofilm surface layer A. This family includes members such as BslA (previously called YuaB). Secreted BslA from Bacillus subtillis has been shown to form surface layers around the biofilm self-assembling at interfaces of B. subtilis biofilms, forming an elastic film. structural analysis revealed that BslA consists of an Ig-type fold with the addition of an unusual, extremely hydrophobic cap region. The hydrophobic cap exhibits physiochemical properties similar to the hydrophobic surface found in fungal hydrophobins; thus, BslA is defined as member of a class of bacterially produced hydrophobins.	1.21455e-46
NZ_CP029465.1\|WP_032732387.1\|3266135_3266624_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	1.4559e-17
NZ_CP029465.1\|WP_003238077.1\|3250906_3251938_-\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	gnl\|CDD\|273966	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP029465.1\|WP_003219322.1\|3240638_3241457_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP029465.1\|WP_003238078.1\|3251960_3253103_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179997	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP029465.1\|WP_003242259.1\|3268520_3269993_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|143437	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.	0
NZ_CP029465.1\|WP_003238070.1\|3241491_3242316_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.41439e-122
NZ_CP029465.1\|WP_003238073.1\|3245749_3246469_+\|yteA-family-sporulation-protein	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	2.7197e-68
NZ_CP029465.1\|WP_003238079.1\|3253099_3254983_-\|1,4-alpha-glucan-branching-enzyme	gnl\|CDD\|273667	TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP\|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI\|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP\|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP029465.1\|WP_003242272.1\|3262730_3263309_+\|energy-coupled-thiamine-transporter-ThiT	gnl\|CDD\|226377	COG3859, COG3859, Predicted membrane protein [Function unknown].	4.92956e-71

>NZ_CP029465.1|WP_003238079.1|3253099_3254983_-|1,4-alpha-glucan-branching-enzyme
MAAASPTAHDVYLFHEGSLFKSYQLFGSHYRELNGQSGYEFCVWAPHASEVRVAGDFNSWSGEQHVMHRVNDNGIWTLFIPGLGEKERYKYEIVTHSGEIRLKADPYAIYSEVRPHTASLTYDLGEYSWKDQLWQKKQKAKTVYEKPVFIYELHLGSWKKHSDGRHYSYQELSQSLIPYIKEHGFTHIELLPVYEHPYDRSWGYQGTGYYSPTSRFGTPHDLMKFVDECHQENIGVILDWVPGHFCKDAHGLYMFDGEPLYEYQEERDRENWLWGTANFDLGKPEVHSFLISNALYWAEFYHIDGFRVDAVANILYWPNQDERHTNPYAVEFLKKLNQTMREAYPHVMMVAEDSTEWPQVTGAIEEGGLGFHFKWNMGWMNDVLTYMETPPEERRNCHQLISFSLLYAFSEHFVLPFSHDEVVYGKKSLLNKMPGDYWQKFAQYRLLLGYMTAHPGKKLIFMGSEFAQFDEWKDTEQLDWFLDSFPMHQKASVFTQDLLRFYQKSKILYENDHRAQSFEWIDVHNNEQSIFSFIRYGKRHGEALVIICNFTPAVYHQYDVGVPFLTQYIEVLNSDSETYGGSGQINKKPLAAKKGALHHKPCYITMTIPPYGISILRAVKKRGEIKR
>NZ_CP029465.1|WP_003238078.1|3251960_3253103_-|glucose-1-phosphate-adenylyltransferase
MKKQCVAMLLAGGKGSRLSGLTKHMAKPAVSFGGKYRIIDFTLSNCSNSGIDTVGILTQYQPLELNSYIGIGSAWDLDRYNGGVTVLPPYAESSEVKWYKGTASAIYENLNYLNQYDPEYVLILSGDHIYKMDYGKMLDFHIEKKADVTISVIEVGWEEASRFGIMKTNADGMITHFDEKPKFPKSNLASMGIYIFNWPLLKQYLEMDDRNPYSSHDFGKDIIPLLLEEKKKLSAYPFKGYWKDVGTVQSLWEANMDLLKEESELKLFERKWKIYSVNPNQPPQFISSDAQVHDSLVNEGCVVYGNVSHSVLFQGVTVGKHSTVKSSVIMPDVTIGEHVVIENAIVPKGLVLPDGAVIRSEKDIQEVLLVSEEFVEKELI
>NZ_CP029465.1|WP_003238077.1|3250906_3251938_-|glucose-1-phosphate-adenylyltransferase-subunit-GlgD
MFNNQMLGVIDETTYKHSLQDLTAQRSLGAIPFAGRYRLIDFMLSNMVNADIRSVAIFPKYRYRSLMDHLGAGKEWDLHRKKDGLFFFPSPHLHQEYDEFGSFRQFSDHLDYFHRSTQQYAVISNSHTVCNIQFQYVLKRHQEVGCDVTEVFQDGQSLQIYIMSTALLKDLIYGHSEKGYKTIQEAVEKESSSLTICPYEYSGYAAIIDSVEKYYTHSMELIQPRFWQQVFLPQQPIYTKVKDEPPTKYGKHSTVKNSLVANGCVLEGEVENCILFRAVHVGKGTKLKNCIVMQKTQIGEECLLEQVISDKDVKIGNATEAAGTAEQPLVLRKGLVQGELMNS
>NZ_CP029465.1|WP_003238074.1|3246576_3247044_+|TspO/MBR-family-protein
MKKIIGVIAVFVITYALFSAADYLFPIDQEWYNSLKKPDWTPPGSAIGIIWAILFALISLSAAIVYAAFSFKDAKSFWIMLLLNYVLNQAFSYFQFTQKNLLAASIDCLLVAITTLILMIAAKKYSRAASYLLLPYFLWSAFATFLSFTIYSMNL
>NZ_CP029465.1|WP_003238073.1|3245749_3246469_+|yteA-family-sporulation-protein
MLTKDQLQHLKNELEQTKKDILNRFKDNDHFQLNSAFPYDSWGELSAYDNHPGDQATELYEREKDIALDLHEREHLRDIEHSLKAIENGTYGICEVSGKEIPYERLEALPTATTLAEYSSQDVVSKDRPIEEETPFGQFEFDDDEEIRAPYDSEDSYQDVEKYGNSSTPQDMENPPLSYDDMTMNAEENIGNTESYENFIATDITGKEITVYQSRAHERYEEELDEEGIMTTFGDLHAD
>NZ_CP029465.1|WP_032731948.1|3244042_3245458_-|isochorismate-synthase-MenF
MVTTVQRTFRKEVLHALHKAKEVNHAVLISYSRQIESLDPLSFFNYGAKKYTGNRFFWSDPESELTIVGLGKEAVFQTNQKNSERYREVFEQWERFKKTAFHIYEEEKLQHSAVGPVLFGGFSFDPCEERGTQWDHFSEGDFFVPALMLTMTAEGPFLTVNRWVSEEEDAEAVLEGLKAFAVEFMVPVLEQGDQAAIAASQELDKDNWLKAIETATSQIKEKQYDKVVLARELLLTFDGPVQIEPMLKTLLNDQQTSYVFAIEQEGQTFVGASPERLIKRDGSTVMSSCLAGSIKRGADEEEDRRIGLELLNDEKNLLEHDIVVGMIHNAFISSCSEVEKPDGPALYKTKSVQHLYTPIVGQLRESASLFDLIEKLHPTPALGGAPQKKAVEVIREIEPMSRGWYAAPIGWIDSQDNGEFAVAIRSGLIEGSTARLFAGCGIVEDSDPQSEYEETQIKLKPMISALGGERR
>NZ_CP029465.1|WP_003238071.1|3242303_3244046_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MTANPITHYIGSFMDEFALSGITDAVVCPGSRSTPLAILAAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVIEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPHMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSAEPFGRMRTGRHVSVKTGIQSVDRESLADVAVMLTEAEKGMIVCGELHSDTDKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKAKLRPDVVIRFGPMPVSKPVFLWLKDDPAIQQIVIDEDGGWRDPTQASAHMIHCNASAFAEAIIDDLADITRSSEWMEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQERYFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKAHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFRAAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVREVKKQWEL
>NZ_CP029465.1|WP_003238070.1|3241491_3242316_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MGTVNLTVSDGVRYAVTDERPNASEAIVCLHGFTGSKQSWNFLDGMLPDSRLIKIDCLGHGETDAPLNGKRYSTSRQVSDLAEIFDQLKLHKVKLIGYSMGGRLVYSFAMTYPERVSALVLESTTPGLKTLEERRERIMRDRKLADFILRNGIKAFVQYWEGIPLFSSQQRLAEDIRHRIRLGRLRNNKIGLANSLTGSGTGSQPSWWSRVDEIEVPVLLICGEWDEKFCAINQEVHKKLPSSRIEIVPNAGHTVHVEQPRFFGKIVSEFLTSI
>NZ_CP029465.1|WP_003219322.1|3240638_3241457_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MAAEWKTKRTYDEILYETYNGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEQLEEETIKWCEEMLEKSPTALRFLKAAFNADTDGLAGIQQFAGDATLLYYTTDEAKEGRDSFKEKRKPDFGQFPRFP
>NZ_CP029465.1|WP_003238068.1|3239087_3240548_-|o-succinylbenzoate--CoA-ligase
MLTEQPNWLMQRAQLTPERIALIYGDQTVTFADLFAASKQMAAQLAAHSVRKGDTAAILLQNRTEMVYAVHACFLLGVKVVLLNTKLSTHERLFQLEDSGARFLLTDSSFDKQDYEHTLQTIDVDELAQVDAKEITIEAYMQLDETATLMYTSGTTGKPKGVQQSFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLDSITRHQVTMISAVQTMLASLLEETSRCPETIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQACEPFEHGEIMVKGPNVMKSYFNRESANEASFQNGWLKTGDLGYLDSDGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLHKPVSAEELTAYCKERLAKYKIPAKFFILDSLPRNASNKLLRNQLKDARKGELL
>NZ_CP029465.1|WP_003242272.1|3262730_3263309_+|energy-coupled-thiamine-transporter-ThiT
MNQSKQLVRLIEIAIMTAAAVILDIVSGMFLRMPQGGSVSIMMIPIFLISFRWGVKAGLTTGLLTGLVQIAIGNLFAQHPVQLLLDYLIAFAAIGLSGFFASSVRKASVSKTKGKLLVSVVSAVFIGSFLRYAAHVISGAVFFGSFAPKGTPVWIYSLTYNATYMVPSFIICAIVLCLLFMTAPRLLKTDRA
>NZ_CP029465.1|WP_003242270.1|3263349_3263871_-|GNAT-family-N-acetyltransferase
MVILREAKVEDIKDIAKVHVDSWGTTYRGIVPADYLNSLNYKEFEDKWKSRSLKGVFVAQDEKGSIFGFASFGPIRSEQKGYDGELYAIYLLEEHQRQGAGRALLAKGAEFLLHHGFSSMFVWVMEKNPSITFYQSYSPEREAEDSFEIAGERLKEIGFGWPDLPALKTVLNR
>NZ_CP029465.1|WP_003242269.1|3263895_3265425_-|flotillin-lipid-rafts-scaffold-protein-FloT
MTMPIIIVIGVVFFLLIALIAVFITKYRTAGPDEALIVTGSYLGNKNVHVDEGGNRIKIVRGGGTFVLPVFQQAEPLSLLSSKLDVSTPEVYTEQGVPVMADGTAIIKIGGSIGEIATAAEQFLGKSKEDREQEAREVLEGHLRSILGSMTVEEIYKNREKFSQEVQRVASQDLAKMGLVIVSFTIKDVRDKNGYLESLGKPRIAQVKRDADIATAEADKETRIKRAEADKDAKKSELERATEIAEAEKINQLKMAEYRREQDTAKANADQAYDLETARARQQVTEQEMQVKIIERQKQIELEEKEILRRERQYDSEVKKKADADRYSVEQSAAAEKAKQLAEADAKKYSIEAMAKAEAEKVRIDGLAKAEAEKAKGETEAEVIRLKGLAEAEAKEKIAAAFEQYGQAAIFDMIVKMLPEYAKQAAAPLSNIDKITVVDTGGSGESSGANKVTSYATNLMSSLQESLKASSGIDVKEMIENFSGKGNVKQSINELTNEIKEAKTVQKPE
>NZ_CP029465.1|WP_032732388.1|3265443_3265968_-|NfeD-family-protein
MELLGVPIQTIYLYTLIIAGSLTLLFLFFGDVFAGLSEGIPLLNPTLVLAFFTCFSAGGYIGELTLPLSSLLLAFLSCILSIILVTLLHIFVLVPLSSAEESLAYKEADLKGRVGKVITAVPVDGFGEVVIEGIGGTISKSAVSFENQQISYGTTVLVVDVNNGVLSVTPHEPI
>NZ_CP029465.1|WP_032732387.1|3266135_3266624_+|DinB-family-protein
MSIFNEARLETWNEVKGLSDEKLNQKPSAEEWSIREVLDHLKKIDMAAQKMLKERVKEAPVKEVEEKPLETAQDRNNKRKAPSHLEPEHDFISGSQMKRELDVVREQLTAAIASLKEEDLKRVLPHPVFQELTVRQWIDFIGHHEKRHLSQIKEIKEKVERV
>NZ_CP029465.1|WP_003242263.1|3266629_3267208_-|MOSC-domain-containing-protein
MWKRMTARTEGLYIADTESFVTKQMDKLDFDYGGIPGDLHFGLTKKAGAREPMFSKGTEIFNRRQISIVSIEECDQIALKMGVPSILPEWLGANVAVSGIHDFTSLKEGSRLIFPSGAALLCEGENDPCIQPGEVIQSYYPDKPKLAPAFVRHALGIRGIVCIVERPGAVYAGDEIEVHSYQRKVKRKAERV
>NZ_CP029465.1|WP_032732389.1|3267295_3268504_-|choline-dehydrogenase
MTLNMKVESMQKFHTFEIPTVIKHGIGAVKHTGEEVAALGVSKALLVTDPGIYKAGVADPVIESLKEAGIEVVLFNKVEPNPPVRLVNEGSELYKKENCNGLVAVGGGSSMDTAKAIGVEATHEGSVLDYEAADGKKPLENRIPPLTTIPTTAGTGSEVTQWAVITDEEREFKFNTGGPLIAAHLTIIDPELHISMPPHVTAMTGIDALAHAIECYTMKFAQPITDAVALMAIEYAAHYIRRAFADGEDLEARYGMAQAAMLAGLSYGSESAGAAHAMSQTLGGIIPVAHGQCVAAMMGPVMEYNWKGYPEKFARIAKAFGIDTSNMTTEEAAKASVNWMYDLVEDLEVPTLEEQGVSPDMIERLSKEAMKDPQTFGNPRDLNEKAYNWIYKRCFNLTPKTV
>NZ_CP029465.1|WP_003242259.1|3268520_3269993_-|betaine-aldehyde-dehydrogenase
MSQTLYIDGEWISAEKEQIRSIINPFNQEEIATVSEGGREDAIKAIAAARRAFDKGEWPSLSGLERGNIVLKIAELIRRDLDELAELESLDTGKTLEESKADMDDIANVFQYYAGLADKDGGEIISSPIPDSESKIIREPIGVCGQITPWNYPLLQASWKIAPALAAGNTIVMKPSEITPLTTIKVFKLMEEAGVPEGVANLVLGPGATVGDELAANKDVDLISFTGGIETGKKIMQAASGNVKKIALELGGKNPNIVFKDADLEVAVDQALNAVFFHAGQVCSAGSRLLVEDAIHDQFLAELVKRAKRIKLGNGFHAETESGPLISAEHRAKVEKYVEIGIQEGAKLETGGKRPEDPALQNGFFYEPTIFSNCKSGMRIVQEEVFGPVLTVETFSSEEEVIALANDTIYGLAGAVWSKDIEKCERVAARLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKMGLEEYTEVKHVYRNTKPAAVNWFNS
>NZ_CP029465.1|WP_003242257.1|3270191_3270734_+|transcriptional-regulator-GbsR
MDENPEFATIEQARDLVIDSIAETMDLYGITRSVGILYGTMYMRDEMTLDEMREELQMSKPSMSTGVKKLQDLNVVKKTFHRGIRKHTFVAEKDFFKFFTNFFPPKWEREVQVNVAAIEEAQADLQEVLSKEGLSEDIKNEALQLYEQLESSKAYYDWLKRLAESVQSGEIFKFIPIETK
>NZ_CP029465.1|WP_003242255.1|3270942_3271488_+|biofilm-surface-layer-protein-BslA
MKRKLLSSLAISALSLGLLVSAPTASFAAESKSTSAHTESTMRTQSSASLFATITGASKTEWSFSDIELTYRPNTLLSLGVMEFTLPSGFTANTKDTMNGNALRTTQILNNGKTVRIPLALDLLGAGEFKLKLNNKTLPAAGTYTFRAENKSLSIGNKFYAEASIDVAKRSTPPTQPCGCN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP024037	Bacillus aryabhattai strain K13 plasmid unnamed2	10417-10476	7	0.883
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP026740	Bacillus megaterium strain YC4-R4 plasmid unnamed4	70764-70823	7	0.883
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NC_017139	Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence	1318-1377	7	0.883
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP010587	Bacillus megaterium Q3 plasmid p1, complete sequence	838-897	7	0.883
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP023319	Bacillus megaterium strain A plasmid p2, complete sequence	75825-75884	7	0.883
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NC_020451	Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence	1960-2019	9	0.85
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP015440	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence	64773-64832	12	0.8
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	483791-483850	13	0.783
NZ_CP029465_2	2.1\|3255624\|60\|NZ_CP029465\|CRISPRCasFinder	3255624-3255683	60	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	57361-57420	14	0.767

1. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **.

7. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****...

9. spacer 2.1|3255624|60|NZ_CP029465|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

527583 : 537905

Staphylococcus_phage(25.0%)

integrase

attL 518937:518950|attR 544330:544343

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
518937:518950	attL	NA	NA	NA	NA
WP_032732224.1\|527583_528882_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	6.7e-164	69.7
WP_003240381.1\|528902_529322_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.8e-47	66.4
WP_003240384.1\|529528_530086_-	recombinase family protein	K7PGS7	Enterobacteria_phage	1.3e-15	31.6
WP_003240386.1\|530303_531770_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	6.9e-149	58.4
WP_003240388.1\|531787_532207_+	universal stress protein	NA	NA	NA	NA
WP_003240389.1\|532631_533738_-\|integrase	site-specific integrase	A0A0A8WF08	Clostridium_phage	7.5e-39	34.2
WP_003240391.1\|533750_534263_-	metallopeptidase ImmA	NA	NA	NA	NA
WP_003240393.1\|534259_534643_-	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	1.2e-12	36.9
WP_003240395.1\|534916_535111_+	ICEBs1 excisionase	NA	NA	NA	NA
WP_048356433.1\|535107_535368_+	hypothetical protein	NA	NA	NA	NA
WP_003240400.1\|535420_535681_+	hypothetical protein	NA	NA	NA	NA
WP_009966619.1\|536046_536427_+	helicase processivity factor HelP	A0A1S5SF38	Streptococcus_phage	1.4e-05	36.1
WP_003240403.1\|536462_537905_+	coupling conjugation protein ConQ	A0A1S5SFB5	Streptococcus_phage	7.3e-119	50.6
544330:544343	attR	NA	NA	NA	NA

DBSCAN-SWA_2

717767 : 727668

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004397719.1\|717767_719063_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.2e-18	25.4
WP_004397718.1\|719137_719863_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	1.6e-45	44.1
WP_004397717.1\|719855_720110_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	4.7e-05	32.1
WP_004397716.1\|720106_720790_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_004397714.1\|720773_723002_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.8e-159	40.1
WP_003233947.1\|722977_724408_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-52	32.5
WP_004397697.1\|724508_725549_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	6.3e-64	41.1
WP_004397695.1\|725545_726133_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-28	41.0
WP_004397693.1\|726129_727668_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.1e-77	52.6

DBSCAN-SWA_3

1315977 : 1343635

Bacillus_phage(66.67%)

tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080030837.1\|1315977_1316661_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003239244.1\|1316752_1317202_-\|coat	spore coat protein CotZ	NA	NA	NA	NA
WP_003239243.1\|1317329_1317818_-\|coat	spore coat protein CotY	NA	NA	NA	NA
WP_003239242.1\|1317968_1318484_-\|coat	spore coat protein	NA	NA	NA	NA
WP_003239241.1\|1318577_1318901_-	hypothetical protein	NA	NA	NA	NA
WP_003239240.1\|1318941_1319328_-\|coat	spore coat protein	NA	NA	NA	NA
WP_003239239.1\|1319487_1319844_+	sporulation protein YjcA	NA	NA	NA	NA
WP_003239236.1\|1320127_1320334_+	hypothetical protein	NA	NA	NA	NA
WP_003239234.1\|1320415_1320571_+	sporulation protein YjcZ	NA	NA	NA	NA
WP_003239233.1\|1320703_1320958_+	sporulation-specific transcription regulator SopVIF	NA	NA	NA	NA
WP_003239232.1\|1321036_1323313_-	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	1.2e-91	34.6
WP_003239230.1\|1323431_1323686_+	hypothetical protein	NA	NA	NA	NA
WP_003239229.1\|1323759_1324182_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003239227.1\|1324187_1324703_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_003239224.1\|1324739_1325462_-	esterase family protein	NA	NA	NA	NA
WP_109571636.1\|1325818_1326940_+	cystathionine gamma-synthase/O-acetylhomoserine thiolyase	A0A0B5JD48	Pandoravirus	1.3e-17	26.7
WP_032732129.1\|1326932_1328105_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_003239217.1\|1328137_1328680_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003239215.1\|1328749_1329940_-	DUF819 domain-containing protein	NA	NA	NA	NA
WP_032732127.1\|1330339_1330519_+	peptidoglycan-binding protein	F8WPX5	Bacillus_phage	4.9e-09	71.1
WP_003239211.1\|1331253_1331595_-	hypothetical protein	NA	NA	NA	NA
WP_003239210.1\|1331773_1332055_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003239209.1\|1332245_1332566_+	hypothetical protein	NA	NA	NA	NA
WP_003239208.1\|1332858_1334811_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_003239207.1\|1334959_1336900_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_003239206.1\|1336915_1337863_+	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_050556890.1\|1338098_1338317_-	hypothetical protein	NA	NA	NA	NA
WP_032732176.1\|1338494_1338779_+	hypothetical protein	NA	NA	NA	NA
WP_003239202.1\|1338894_1339401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003239201.1\|1339695_1340091_-	hypothetical protein	NA	NA	NA	NA
WP_003239200.1\|1340357_1340840_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_003239199.1\|1340870_1341065_-	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_003239198.1\|1341372_1341702_-	YjdJ family protein	NA	NA	NA	NA
WP_080030852.1\|1342286_1343276_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_003239195.1\|1343398_1343635_-\|coat	spore coat protein CotT	NA	NA	NA	NA

DBSCAN-SWA_4

1377379 : 1408264

Bacillus_phage(33.33%)

portal,tail,terminase,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080010777.1\|1377379_1378516_+	response regulator aspartate phosphatase RapA	A0A1P8CWN8	Bacillus_phage	8.3e-94	47.1
WP_003239143.1\|1378505_1378640_+	phosphatase RapA inhibitor PhrA	NA	NA	NA	NA
WP_003239142.1\|1378668_1378923_-	hypothetical protein	NA	NA	NA	NA
WP_003239141.1\|1379045_1379999_+	N-acetylmuramoyl-L-alanine amidase	A0A218KC88	Bacillus_phage	5.6e-67	73.5
WP_003239140.1\|1380035_1380413_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	6.1e-17	43.4
WP_003239139.1\|1380518_1381121_+	poly-gamma-glutamate hydrolase family protein	A0A0Y0AJU6	Bacillus_phage	2.7e-43	48.3
WP_003239138.1\|1381194_1382031_+	manganese catalase family protein	NA	NA	NA	NA
WP_003239137.1\|1382075_1382672_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	2.8e-40	52.3
WP_003239136.1\|1382836_1383175_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	3.8e-18	44.4
WP_003239135.1\|1383352_1383532_+	hypothetical protein	NA	NA	NA	NA
WP_003239134.1\|1383518_1384355_+	hypothetical protein	S6BFM4	Thermus_phage	4.3e-23	50.5
WP_080030836.1\|1384254_1385055_+	ATP-binding protein	A6XMI1	Bacillus_virus	7.0e-63	53.0
WP_003239132.1\|1385054_1385222_+	hypothetical protein	NA	NA	NA	NA
WP_003239131.1\|1385306_1385654_+	hypothetical protein	NA	NA	NA	NA
WP_003239129.1\|1385650_1385857_+	phage-like element PBSX protein XtrA	A0A2H4J4M6	uncultured_Caudovirales_phage	1.6e-11	55.6
WP_003239128.1\|1385971_1386481_+	sigma-70 family RNA polymerase sigma factor	A0A1L2JY33	Aeribacillus_phage	1.6e-20	36.8
WP_003239127.1\|1386598_1387396_+\|terminase	terminase small subunit	A0A0S2MVB6	Bacillus_phage	4.0e-58	49.4
WP_003239126.1\|1387392_1388694_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	1.5e-155	60.9
WP_080030851.1\|1388697_1390185_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	3.8e-139	55.3
WP_003239124.1\|1390204_1391032_+	hypothetical protein	A0A1B1P7E4	Bacillus_phage	2.3e-53	57.7
WP_003232690.1\|1391057_1391993_+	phage-like element PBSX protein XkdG	A0A1B1P7E3	Bacillus_phage	1.1e-104	63.8
WP_003239123.1\|1392014_1392398_+	DUF3199 family protein	A0A1B1P7D6	Bacillus_phage	7.1e-13	41.5
WP_003239122.1\|1392394_1392751_+	YqbH/XkdH family protein	NA	NA	NA	NA
WP_003239120.1\|1392747_1393233_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_003239119.1\|1393246_1393687_+	hypothetical protein	NA	NA	NA	NA
WP_003239117.1\|1393690_1393909_+	hypothetical protein	NA	NA	NA	NA
WP_003239116.1\|1393905_1395306_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	8.5e-80	39.7
WP_003239114.1\|1395307_1395751_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	1.1e-25	45.2
WP_003232676.1\|1395841_1396288_+	phage-like element PBSX protein XkdN	A0A249XXA9	Clostridium_phage	7.5e-14	33.6
WP_003239113.1\|1396317_1396467_+	hypothetical protein	NA	NA	NA	NA
WP_003239111.1\|1400341_1401001_+	LysM peptidoglycan-binding domain-containing protein	A0A090DBR9	Clostridium_phage	2.8e-25	34.0
WP_003239110.1\|1401016_1401994_+	hypothetical protein	H7BV96	unidentified_phage	1.0e-39	32.6
WP_003239109.1\|1401993_1402260_+	DUF2577 family protein	S6C459	Thermus_phage	6.4e-05	37.5
WP_003239108.1\|1402318_1402744_+	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	9.6e-11	34.7
WP_003239107.1\|1402736_1403783_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.8e-74	44.9
WP_003239106.1\|1403766_1404345_+	YmfQ family protein	A0A2H4J717	uncultured_Caudovirales_phage	1.1e-14	33.8
WP_003239104.1\|1404341_1404614_+	hypothetical protein	NA	NA	NA	NA
WP_003239103.1\|1404616_1406107_+	hypothetical protein	M4ZRP1	Bacillus_phage	9.5e-21	59.4
WP_003239102.1\|1406119_1406560_+	hypothetical protein	NA	NA	NA	NA
WP_032732119.1\|1406549_1406741_+	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	4.3e-19	66.1
WP_032732173.1\|1406812_1407082_+	hemolysin XhlA family protein	A0A2H4JD40	uncultured_Caudovirales_phage	1.3e-26	69.3
WP_003239099.1\|1407094_1407358_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	3.6e-24	64.4
WP_003239098.1\|1407370_1408264_+	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	2.9e-81	67.9

DBSCAN-SWA_5

1988221 : 1995009

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003221104.1\|1988221_1988614_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	3.8e-30	59.1
WP_003238357.1\|1988573_1990676_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	87.0
WP_003238355.1\|1990693_1991683_+	class 1b ribonucleoside-diphosphate reductase subunit beta	F8WQ21	Bacillus_phage	6.7e-156	84.1
WP_003238353.1\|1991730_1992351_+	hypothetical protein	A0A127AYS1	Bacillus_phage	7.1e-47	48.4
WP_003238351.1\|1992413_1993181_-	sporulation-specific N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	2.0e-51	49.1
WP_019258474.1\|1994040_1995009_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	3.0e-52	40.5

DBSCAN-SWA_6

2254679 : 2261763

Bacillus_phage(100.0%)

integrase

attL 2251243:2251257|attR 2258089:2258103

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2251243:2251257	attL	NA	NA	NA	NA
WP_003241805.1\|2254679_2255816_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	9.4e-45	34.9
WP_032732305.1\|2257336_2257729_-	hypothetical protein	NA	NA	NA	NA
WP_003241798.1\|2258017_2258245_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
2258089:2258103	attR	NA	NA	NA	NA
WP_003241796.1\|2258474_2258660_+	hypothetical protein	O64196	Bacillus_phage	5.6e-08	54.7
WP_003241794.1\|2258898_2259180_-	hypothetical protein	A0A1P8CWV8	Bacillus_phage	2.8e-19	65.0
WP_032732304.1\|2259409_2259754_-	hypothetical protein	NA	NA	NA	NA
WP_003241789.1\|2259803_2260460_-	hypothetical protein	NA	NA	NA	NA
WP_032732331.1\|2260570_2260882_-	hypothetical protein	NA	NA	NA	NA
WP_003241785.1\|2260900_2261032_-	hypothetical protein	A0A1P8CWV9	Bacillus_phage	1.8e-13	86.0
WP_003241782.1\|2261042_2261258_-	hypothetical protein	O64089	Bacillus_phage	9.7e-28	87.3
WP_003241780.1\|2261261_2261513_-	hypothetical protein	A0A1P8CWV6	Bacillus_phage	5.1e-36	96.4
WP_080030913.1\|2261622_2261763_+	hypothetical protein	A0A1P8CWV7	Bacillus_phage	2.4e-19	95.7

DBSCAN-SWA_7

2273027 : 2285757

Bacillus_phage(100.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003241749.1\|2273027_2274158_+	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	1.9e-98	50.3
WP_162532064.1\|2274147_2274291_+	hypothetical protein	NA	NA	NA	NA
WP_003241747.1\|2274611_2275079_-	hypothetical protein	NA	NA	NA	NA
WP_003241745.1\|2275080_2275656_-	hypothetical protein	NA	NA	NA	NA
WP_003241743.1\|2275876_2277127_-	lesion bypass phage DNA polymerase	O64031	Bacillus_phage	1.8e-235	97.4
WP_003241741.1\|2277119_2277452_-	YolD-like family protein	O64030	Bacillus_phage	5.5e-54	97.3
WP_003241738.1\|2277625_2277961_+	hypothetical protein	A0A1P8CWM9	Bacillus_phage	8.3e-50	91.9
WP_032732301.1\|2277999_2278359_-	hypothetical protein	A0A1P8CWJ9	Bacillus_phage	3.1e-55	89.1
WP_003241736.1\|2278364_2278832_-	DUF4879 domain-containing protein	O64027	Bacillus_phage	6.1e-75	91.0
WP_127721184.1\|2279071_2279152_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_003241734.1\|2279466_2279925_-	SMI1/KNR4 family protein	A0A1P8CWJ1	Bacillus_phage	7.0e-76	92.1
WP_003241731.1\|2280030_2280609_-	SMI1/KNR4 family protein	O64025	Bacillus_phage	7.7e-96	89.1
WP_003241729.1\|2280664_2281123_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_003241727.1\|2281132_2282935_-	type II toxin-antitoxin system toxin ribonuclease YobL	A0A1P8CWI7	Bacillus_phage	1.5e-214	85.6
WP_032732300.1\|2283034_2283592_-	SMI1/KNR4 family protein	O64022	Bacillus_phage	3.7e-103	96.8
WP_003241723.1\|2283612_2284599_-	HNH endonuclease	NA	NA	NA	NA
WP_003241721.1\|2284866_2285757_+	endonuclease YokF	O64020	Bacillus_phage	7.2e-109	91.9

DBSCAN-SWA_8

2506076 : 2512193

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003223904.1\|2506076_2506670_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.0e-14	35.4
WP_004398201.1\|2506659_2507415_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.2e-09	28.3
WP_004398203.1\|2507716_2508241_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_003223910.1\|2508254_2508629_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA
WP_003223915.1\|2508741_2509206_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.5e-44	60.0
WP_004398206.1\|2509238_2510435_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-114	54.7
WP_004398207.1\|2510449_2511097_-	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.4e-42	45.9
WP_004398208.1\|2511107_2512193_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.6e-56	36.1

DBSCAN-SWA_9

2799048 : 2888046

105

Bacillus_phage(34.88%)

capsid,integrase,tRNA,coat,portal,tail,holin,terminase,plate,head,protease

attL 2842537:2842558|attR 2879487:2879508

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003237279.1\|2799048_2799417_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003237281.1\|2799435_2800572_+	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	3.5e-15	25.6
WP_003237284.1\|2800591_2800789_+	hypothetical protein	NA	NA	NA	NA
WP_003237286.1\|2800804_2801104_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003237287.1\|2801280_2801559_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_003237289.1\|2801594_2802575_-	aldo/keto reductase	NA	NA	NA	NA
WP_003237293.1\|2802740_2803643_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_032731969.1\|2803820_2804225_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003237298.1\|2804312_2804720_-	aldehyde stress transcriptional regulator AdhR	NA	NA	NA	NA
WP_003237300.1\|2804899_2805634_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003237302.1\|2805799_2806849_+	formaldehyde dehydrogenase AdhA	A0A2K9L339	Tupanvirus	1.2e-70	42.4
WP_003237304.1\|2806998_2807508_+\|protease	cysteine protease YraA	NA	NA	NA	NA
WP_109571639.1\|2807607_2809611_-	GH32 C-terminal domain-containing protein	S6ATV4	Bacillus_phage	6.0e-87	38.8
WP_003237310.1\|2809800_2810628_-	PTS fructose transporter subunit IID	NA	NA	NA	NA
WP_003237312.1\|2810649_2811459_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA
WP_003237315.1\|2811475_2811964_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA
WP_003237317.1\|2811963_2812404_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_003237321.1\|2812594_2815402_-	transcriptional regulator LevR	NA	NA	NA	NA
WP_003237323.1\|2815795_2816422_-	hypothetical protein	NA	NA	NA	NA
WP_003237325.1\|2816793_2818182_+	amino acid permease	NA	NA	NA	NA
WP_003237327.1\|2818274_2818907_-	LysE family transporter	NA	NA	NA	NA
WP_003237329.1\|2819059_2819887_+	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_003237331.1\|2820090_2820591_+	RNA polymerase sigma factor SigV	NA	NA	NA	NA
WP_003237333.1\|2820590_2821448_+	anti-sigma-V factor rsiV	NA	NA	NA	NA
WP_003237335.1\|2821558_2823475_+	acyltransferase family protein	B5WZU0	Pseudomonas_phage	4.6e-44	34.6
WP_003237337.1\|2823599_2823887_+	YrhK family protein	NA	NA	NA	NA
WP_003237339.1\|2824167_2827329_-	cytochrome P450	V5UQK0	Mycobacterium_phage	2.2e-75	36.6
WP_032731971.1\|2827344_2827935_-	transcriptional regulator FatR	NA	NA	NA	NA
WP_003237342.1\|2828159_2828702_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003237346.1\|2828890_2829049_-	hypothetical protein	NA	NA	NA	NA
WP_003237348.1\|2829209_2829359_-	YrzI family small protein	NA	NA	NA	NA
WP_003237350.1\|2829748_2830549_-	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_003237353.1\|2830811_2831180_-	DUF2294 domain-containing protein	NA	NA	NA	NA
WP_080030811.1\|2831493_2834436_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003237356.1\|2834454_2834937_+	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_003237358.1\|2834972_2835203_-	hypothetical protein	NA	NA	NA	NA
WP_003237360.1\|2835285_2836425_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	A0A0B5JD48	Pandoravirus	2.7e-23	31.0
WP_003237362.1\|2836426_2837350_-	O-acetylserine dependent cystathionine beta-synthase	A0A1W6JHY1	Lactococcus_phage	4.2e-59	42.4
WP_003237364.1\|2837412_2838108_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_003237366.1\|2838128_2838770_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_003225924.1\|2838961_2839165_+	YrzA family protein	NA	NA	NA	NA
WP_032731900.1\|2839201_2839903_-	YrrS family protein	NA	NA	NA	NA
WP_003237371.1\|2839967_2841722_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_003237373.1\|2841775_2842249_-	transcription elongation factor GreA	NA	NA	NA	NA
2842537:2842558	attL	NA	NA	NA	NA
WP_170117170.1\|2842750_2842903_+	hypothetical protein	NA	NA	NA	NA
WP_032731901.1\|2842912_2843101_+	hypothetical protein	A0A2H4J4T3	uncultured_Caudovirales_phage	8.5e-12	55.0
WP_003237377.1\|2843144_2843999_-	hypothetical protein	NA	NA	NA	NA
WP_032731903.1\|2844340_2845273_-	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	2.5e-96	76.6
WP_003237379.1\|2845315_2845738_-\|holin	holin family protein	D6R405	Bacillus_phage	1.3e-55	84.2
WP_003237380.1\|2845788_2845989_-	XkdX family protein	Q9ZXD9	Bacillus_phage	1.7e-05	39.1
WP_003237381.1\|2845989_2846355_-	hypothetical protein	O64053	Bacillus_phage	9.7e-20	55.7
WP_003237382.1\|2846366_2848133_-\|plate	phage baseplate upper protein	M4ZRP1	Bacillus_phage	1.5e-57	48.4
WP_003237383.1\|2848145_2850041_-	hypothetical protein	A0A185AMX0	Staphylococcus_phage	2.1e-41	30.2
WP_003237384.1\|2850051_2851926_-\|tail	phage tail protein	D6R400	Bacillus_phage	9.3e-50	27.6
WP_032731904.1\|2851939_2852773_-\|tail	phage tail family protein	M4ZS20	Bacillus_phage	1.9e-34	34.8
WP_003237386.1\|2852785_2856562_-\|tail	phage tail tape measure protein	A0A2H4JA91	uncultured_Caudovirales_phage	2.9e-106	63.8
WP_032731905.1\|2856624_2856807_-	hypothetical protein	NA	NA	NA	NA
WP_003237390.1\|2856818_2857181_-	hypothetical protein	NA	NA	NA	NA
WP_003237392.1\|2857238_2857820_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	J7KKC8	Streptococcus_phage	6.3e-29	40.1
WP_003237394.1\|2857841_2858231_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_003237396.1\|2858227_2858620_-	HK97 gp10 family phage protein	A0A0M5M1E5	Enterococcus_phage	8.8e-11	37.9
WP_032731906.1\|2858619_2858946_-\|head	phage head closure protein	NA	NA	NA	NA
WP_003237405.1\|2858935_2859229_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JB77	uncultured_Caudovirales_phage	2.0e-07	33.0
WP_003237406.1\|2859283_2859691_-	collagen-like protein	D6R3Z0	Bacillus_phage	8.3e-12	53.0
WP_003237407.1\|2859717_2860923_-\|capsid	phage major capsid protein	A0A2H4JFE3	uncultured_Caudovirales_phage	8.9e-78	49.7
WP_003237408.1\|2860971_2861568_-\|head,protease	HK97 family phage prohead protease	A0A1J0MFL1	Staphylococcus_phage	9.5e-49	53.3
WP_003237409.1\|2861560_2862787_-\|portal	phage portal protein	A0A2H4J331	uncultured_Caudovirales_phage	8.2e-71	39.0
WP_003237410.1\|2862791_2862998_-	hypothetical protein	NA	NA	NA	NA
WP_003237411.1\|2863014_2864748_-\|terminase	terminase large subunit	A0A2H4JCI4	uncultured_Caudovirales_phage	1.1e-145	49.5
WP_003237412.1\|2864737_2865223_-\|terminase	phage terminase small subunit P27 family	A0A1Q1PVW3	Staphylococcus_phage	1.4e-18	37.9
WP_032731907.1\|2865456_2865669_-	hypothetical protein	NA	NA	NA	NA
WP_003237413.1\|2866045_2866261_-	hypothetical protein	NA	NA	NA	NA
WP_003237415.1\|2866402_2866720_-	hypothetical protein	NA	NA	NA	NA
WP_003237418.1\|2866788_2866938_-	hypothetical protein	NA	NA	NA	NA
WP_003220264.1\|2867475_2868018_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	5.8e-61	63.9
WP_003237422.1\|2868014_2868467_-	hypothetical protein	S6AVV9	Thermus_phage	3.4e-38	56.6
WP_003237426.1\|2869054_2869195_-	hypothetical protein	NA	NA	NA	NA
WP_003237427.1\|2869224_2869971_-	hypothetical protein	A0A2H4J6H9	uncultured_Caudovirales_phage	5.9e-96	72.3
WP_003237428.1\|2870051_2870861_-	DNA adenine methylase	U5P0W8	Brevibacillus_phage	6.8e-90	59.0
WP_003237429.1\|2870864_2871122_-	hypothetical protein	A0A2H4JA61	uncultured_Caudovirales_phage	1.6e-05	42.9
WP_003237431.1\|2871118_2871349_-	hypothetical protein	J9PL10	Bacillus_phage	1.0e-11	44.2
WP_003237433.1\|2871345_2871723_-	hypothetical protein	NA	NA	NA	NA
WP_003237435.1\|2871765_2871963_-	hypothetical protein	NA	NA	NA	NA
WP_003237437.1\|2872034_2872190_-	hypothetical protein	NA	NA	NA	NA
WP_003237439.1\|2872204_2872345_-	BH0509 family protein	NA	NA	NA	NA
WP_003237444.1\|2872452_2872998_-	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	7.7e-05	40.4
WP_003237448.1\|2872994_2873153_-	hypothetical protein	A8ATM6	Listeria_phage	6.5e-05	55.6
WP_003237450.1\|2873149_2873299_-	hypothetical protein	NA	NA	NA	NA
WP_003237451.1\|2873312_2874143_-	ATP-binding protein	A0A0U3U1U1	Bacillus_phage	6.4e-35	35.1
WP_003237452.1\|2874126_2874999_-	phage replisome organizer N-terminal domain-containing protein	V9QKF6	Oenococcus_phage	4.5e-47	41.4
WP_003237453.1\|2875211_2875541_-	hypothetical protein	NA	NA	NA	NA
WP_003237454.1\|2875581_2875779_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045384214.1\|2875982_2876372_+	helix-turn-helix transcriptional regulator	A0A0U4B088	Bacillus_phage	2.9e-06	30.5
WP_162532065.1\|2876594_2876807_-	hypothetical protein	NA	NA	NA	NA
WP_003237457.1\|2876745_2877927_-	helix-turn-helix transcriptional regulator	Q2I8D6	Bacillus_phage	2.2e-12	26.8
WP_003237459.1\|2878229_2879387_+\|integrase	site-specific integrase	S6C485	Thermus_phage	7.0e-64	36.1
WP_003237461.1\|2879449_2880085_-	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	38.7
2879487:2879508	attR	NA	NA	NA	NA
WP_003237463.1\|2880090_2881359_-	U32 family peptidase	Q6DW11	Phage_TP	1.2e-37	31.8
WP_003237465.1\|2881377_2882307_-	U32 family peptidase	NA	NA	NA	NA
WP_003237467.1\|2882312_2882966_-	O-methyltransferase	W8CYT3	Bacillus_phage	5.4e-05	31.7
WP_109571640.1\|2883117_2884224_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_003237470.1\|2884335_2884617_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_003237472.1\|2884634_2885051_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_003225903.1\|2885058_2885325_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_003237474.1\|2885409_2888046_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	6.3e-68	34.5

DBSCAN-SWA_10

3529940 : 3562057

Staphylococcus_phage(20.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109571630.1\|3529940_3531091_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	4.6e-39	61.9
WP_003235152.1\|3531206_3531623_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_003235153.1\|3531627_3532296_-	disulfide bond formation protein BdbD	NA	NA	NA	NA
WP_162532066.1\|3532415_3534524_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-112	35.0
WP_003235155.1\|3534683_3537095_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.1e-119	37.7
WP_003235156.1\|3537178_3537388_-	copper chaperone CopZ	NA	NA	NA	NA
WP_003235157.1\|3537461_3537767_-	copper-sensing transcriptional repressor CsoR	NA	NA	NA	NA
WP_032731632.1\|3537893_3538970_+	oxidoreductase	NA	NA	NA	NA
WP_003235159.1\|3539005_3539641_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_003235160.1\|3539771_3541682_-	FUSC family protein	NA	NA	NA	NA
WP_003235161.1\|3541783_3541933_-	hypothetical protein	NA	NA	NA	NA
WP_003235162.1\|3541948_3542353_-	YvaD family protein	NA	NA	NA	NA
WP_003235163.1\|3542349_3542709_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_003235164.1\|3542705_3543278_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003235165.1\|3543387_3544182_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_109571631.1\|3544823_3545102_-	hypothetical protein	NA	NA	NA	NA
WP_003220025.1\|3546920_3547391_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	3.2e-47	63.4
WP_003235167.1\|3547535_3549875_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.3e-88	43.1
WP_003235169.1\|3549893_3550634_-	carboxylesterase	NA	NA	NA	NA
WP_003220028.1\|3550765_3550996_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_003235171.1\|3551146_3551917_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003235175.1\|3552339_3552747_+	transcriptional repressor RghR	S6C481	Thermus_phage	8.6e-17	59.0
WP_003235177.1\|3552775_3553195_+	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	1.2e-13	61.2
WP_003220037.1\|3553286_3553613_+	catDE operon transcriptional regulator CatR	NA	NA	NA	NA
WP_003235179.1\|3553745_3555446_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-22	28.0
WP_003235180.1\|3555488_3556169_-\|holin	choline ABC transporter permease OpuBD	NA	NA	NA	NA
WP_003235183.1\|3556184_3557105_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003235185.1\|3557116_3557770_-\|holin	choline ABC transporter permease OpuBB	NA	NA	NA	NA
WP_003235189.1\|3557784_3558930_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.7e-15	32.7
WP_003235191.1\|3559214_3559748_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_003219981.1\|3559780_3560455_-\|holin	glycine betaine/carnitine/choline/choline sulfate ABC transporter permease OpuCD	G3M9Y4	Bacillus_virus	7.3e-05	25.6
WP_003235193.1\|3560472_3561390_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003235195.1\|3561403_3562057_-\|holin	glycine betaine/carnitine/choline/choline sulfate ABC transporter permease OpuCB	NA	NA	NA	NA

DBSCAN-SWA_11

3948592 : 3972133

Staphylococcus_phage(66.67%)

protease,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003235871.1\|3948592_3950263_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003235873.1\|3950259_3950688_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003222002.1\|3951001_3951133_+\|bacteriocin	subtilosin A family bacteriocin	NA	NA	NA	NA
WP_080010891.1\|3951089_3951200_+\|bacteriocin	bacteriocin biosynthesis protein	NA	NA	NA	NA
WP_003235875.1\|3951267_3952614_+	subtilosin maturase AlbA	NA	NA	NA	NA
WP_003222006.1\|3952626_3952788_+\|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbB	NA	NA	NA	NA
WP_003235877.1\|3952784_3953504_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.6e-20	28.1
WP_003235879.1\|3953496_3954807_+\|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbD	NA	NA	NA	NA
WP_080030787.1\|3954796_3955957_+	insulinase family protein	NA	NA	NA	NA
WP_003235883.1\|3955961_3957242_+	insulinase family protein	NA	NA	NA	NA
WP_003235887.1\|3957238_3957940_+\|bacteriocin	bacteriocin biosynthesis protein AlbG	NA	NA	NA	NA
WP_003235889.1\|3957946_3959323_-	YncE family protein	NA	NA	NA	NA
WP_003235891.1\|3959362_3960718_-	YncE family protein	NA	NA	NA	NA
WP_032731685.1\|3960714_3960915_-	hypothetical protein	NA	NA	NA	NA
WP_003235896.1\|3960947_3962093_+	response regulator aspartate phosphatase RapF	A0A1P8CWN8	Bacillus_phage	5.0e-78	44.3
WP_003222023.1\|3962076_3962196_+	phosphatase RapF inhibitor PhrF	NA	NA	NA	NA
WP_003235899.1\|3962449_3962929_+	hypothetical protein	NA	NA	NA	NA
WP_032731687.1\|3963851_3964526_+	hypothetical protein	NA	NA	NA	NA
WP_032731690.1\|3964526_3965333_+	hypothetical protein	NA	NA	NA	NA
WP_003235909.1\|3965335_3965983_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.7e-28	40.0
WP_003235911.1\|3965975_3966536_+	hypothetical protein	NA	NA	NA	NA
WP_003235913.1\|3966582_3967455_-	agmatinase	NA	NA	NA	NA
WP_003235914.1\|3967515_3968346_-	spermidine synthase	NA	NA	NA	NA
WP_003235916.1\|3968547_3970626_+	penicillin-binding protein	NA	NA	NA	NA
WP_003235920.1\|3970942_3971461_-	YwhD family protein	NA	NA	NA	NA
WP_003235922.1\|3971473_3972133_-\|protease	site-2 protease family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029465

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection