CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029491	Streptococcus sobrinus strain 10919 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,DinG,csm6	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029491_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029491_1

163545-163615

Orphan

Consensus_repeat	Method
GGTTCGGGGAACCTTTTTATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029491_1

>merge|NZ_CP029491|1|163545-163615|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCCGAGCTTGAAAACTGGGAAGCGAGGCGGTTCGGGGAACCTTTTTATCCC

>NZ_CP029491|1|1|163545-163615|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCC	GAGCTTGAAAACTGGGAAGCGAGGC
GGTTCGGGGAACCTTTTTATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029491.1\|WP_019777562.1\|157469_158171_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP029491.1\|WP_002961192.1\|171621_172203_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|225880
NZ_CP029491.1\|WP_109833410.1\|165643_166417_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP029491.1\|WP_109833412.1\|167612_168176_+\|TIGR01440-family-protein	unknown	unknown	gnl\|CDD\|237472
NZ_CP029491.1\|WP_002959528.1\|154928_156266_+\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_CP029491.1\|WP_002961170.1\|159091_159676_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP029491.1\|WP_002961177.1\|166382_167144_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|183513
NZ_CP029491.1\|WP_021673426.1\|170892_171531_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319859
NZ_CP029491.1\|WP_109833414.1\|169415_170699_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP029491.1\|WP_019775330.1\|172495_174100_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP029491.1\|WP_109833411.1\|167133_167604_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227064
NZ_CP029491.1\|WP_109833409.1\|159842_160877_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP029491.1\|WP_019777564.1\|160896_161448_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237628
NZ_CP029491.1\|WP_109833413.1\|168324_169173_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP029491.1\|WP_002961167.1\|156899_157331_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029491.1\|WP_002961174.1\|164107_165244_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653
NZ_CP029491.1\|WP_002961173.1\|161705_163541_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP029491.1\|WP_019777563.1\|158157_158925_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NZ_CP029491.1\|WP_109833723.1\|153650_154556_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP029491.1\|WP_002959526.1\|154650_154917_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923

Protein	Function_ID	Function_description	E-value
NZ_CP029491.1\|WP_019777562.1\|157469_158171_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	3.29152e-48
NZ_CP029491.1\|WP_002961192.1\|171621_172203_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|225880	COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription].	1.06384e-30
NZ_CP029491.1\|WP_109833410.1\|165643_166417_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.67042e-130
NZ_CP029491.1\|WP_109833412.1\|167612_168176_+\|TIGR01440-family-protein	gnl\|CDD\|237472	PRK13690, PRK13690, hypothetical protein; Provisional.	4.37907e-108
NZ_CP029491.1\|WP_002959528.1\|154928_156266_+\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_CP029491.1\|WP_002961170.1\|159091_159676_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.69131e-38
NZ_CP029491.1\|WP_002961177.1\|166382_167144_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|183513	PRK12413, PRK12413, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	2.70052e-150
NZ_CP029491.1\|WP_021673426.1\|170892_171531_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.73093e-33
NZ_CP029491.1\|WP_109833414.1\|169415_170699_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	5.5293e-160
NZ_CP029491.1\|WP_019775330.1\|172495_174100_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP029491.1\|WP_109833411.1\|167133_167604_+\|ECF-transporter-S-component	gnl\|CDD\|227064	COG4720, COG4720, Predicted membrane protein [Function unknown].	3.10954e-27
NZ_CP029491.1\|WP_109833409.1\|159842_160877_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.54904e-105
NZ_CP029491.1\|WP_019777564.1\|160896_161448_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237628	PRK14156, PRK14156, heat shock protein GrpE; Provisional.	1.56542e-87
NZ_CP029491.1\|WP_109833413.1\|168324_169173_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.25873e-41
NZ_CP029491.1\|WP_002961167.1\|156899_157331_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.14951e-14
NZ_CP029491.1\|WP_002961174.1\|164107_165244_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0
NZ_CP029491.1\|WP_002961173.1\|161705_163541_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP029491.1\|WP_019777563.1\|158157_158925_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	1.54694e-50
NZ_CP029491.1\|WP_109833723.1\|153650_154556_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.34882e-42
NZ_CP029491.1\|WP_002959526.1\|154650_154917_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	7.95131e-41

>NZ_CP029491.1|WP_002961173.1|161705_163541_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKNGEIIVGDAAKRQAVTNPDTVISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAEDYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTEKDEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDYLVDEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGDAGPLHLEVSLTRAKFDDLTRDLVDRTKTPVRRALSDAGLSLSEIDEVILVGGSTRIPAVVEVVKAETGKEPNKSVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGVPQIEVTFDIDKNGIVSVKAKDLGTQKEQHIVIKSNDGLSEDEIERMMKDAEANADADAKRKEEVDLKNEVDQAIFATEKTIKETEGKGFDTERDAAKTALDDLKKAQESGNTDDMKAKLETLNEKAQALAVKLYEQAAAAQQAAGGDQAADANDAGSKDSGDDVVDGEFTEK
>NZ_CP029491.1|WP_019777564.1|160896_161448_+|nucleotide-exchange-factor-GrpE
MSEDIKKDKEEDVTQKAPSSEAEEKQQAQEATPEEATEKTELAAALEKVEDFENKFLRAHAEMQNIQRRANEERQQLQKYRSQDLAKGVLPSLDNLERALAVEGLSDDVKKGIEMVQESLLQALKEEGVEEVPVDSFDHNFHMAVQTLPTDDDHPADSIAQVLQKGYQLHDRLLRPAMVVVYN
>NZ_CP029491.1|WP_109833409.1|159842_160877_+|heat-inducible-transcriptional-repressor-HrcA
MITQRQNDILSIIVELFTQTHEPVGSKALQAYISTSSATIRNDMAILEKIGLLEKAHTSSGRLPSRQGFQYYVSHLLNLESVGEEDAYQVIKAFDFEFFKLEDVLKKAGDVLADLTECTAITLDVEPSNQRLSAFDIVKLSHHDALAVMTFDDSNTVTSQFAIPKNFLDEDLLVVSQLVRERFLGQTVMEIHYRIRTEIPQIVQRYFKITDNVLELFEHIFKEMFVEKLFLSGKENLLKYSDDQTYRLLDNTQELALTIRRQFQEEQAYVIRLADENKQGLEALSQLSYKFLIPYRGFGNLTLLGPVTIDYRRSMGLLNVVSRVLTMKLADFYRYLSSNHYEVH
>NZ_CP029491.1|WP_002961170.1|159091_159676_+|glucosaminidase-domain-containing-protein
MQSRLKFRPFMIVFGLVLALVLLPLLLNMRTKAANTKVTSTYSQASFIKEVAPVAQKLSKAYGVKASVLIAQVAQSTDYGSNLLAVRYHNYLGVLAQPGDARIVLTTQSYEKGKWETVKQPYKIYENWQDSLYDYMEEISAGMWGKQLYTTLATTEEYTTAARALQKAGVDTDPEYANKLIAIIQGKNLTQYDK
>NZ_CP029491.1|WP_019777563.1|158157_158925_+|D-alanyl-D-alanine-carboxypeptidase-family-protein
MNKRSRQFLMIFFAVLVIIFGFAYFHDRRASQQSKGTSSQTTKTKQVTRAAGSSSDNNSSASGSDLPDVSADDWQLIVVNRDNITKELNPDLTTIDNIKVDSRIADNVKEFLAAAQKIDSKEHLISGYRSVAYQKELFDSYVKQEMSNDPSLSESQAEDKVKTYSQPAGASEHQTGLAIDMSTVDSLNESDPTVVEQLKKIAPDYGFVLRFEQGKSDSTGVDYEDWHFRYVGKASAKYMTEHNLSLEEYVAQLKK
>NZ_CP029491.1|WP_019777562.1|157469_158171_+|histidine-phosphatase-family-protein
MAKTRLFIARHGKTMFNTIGRAQGWSDTPLTKEGERGIQELGIGLKEAGLHFVAAYSSDSGRTLQTMEIILRELGQETIPYKRDKRIREWCFGSLDGGYDAELFNGVIPRVFDKPVEEMTYQDMANAIMAVDTAGWAEPWEALKNRIITGFSDIAKEVQAKGGGDAIVVSHGMTIATLMGLIDPSQPRSLALDNGSICQLTYEDGDLHIAAIGDMSYRQKGREILEKEANEQA
>NZ_CP029491.1|WP_002961167.1|156899_157331_-|MarR-family-transcriptional-regulator
MDLNQSLGFLLNSGAKLMKRQLDSKLRAYQITSSQWAVLKLLSQNDKLSQVEIAQAIKTDKATCGAIIDKLIKKEFVKRTISQQDQRARIIEISPLALSVTDELTSLDEETNTEALMGIKQKEQEIFIKTLEQLIINLENKEI
>NZ_CP029491.1|WP_002959528.1|154928_156266_+|PFL-family-protein
MDIQQVTETIAMIEEQNFDVRTITMGISLLDCIDPDINRAADKVYRKIVDKAANLVAVGDEISAELGIPIVNKRVSVTPISIIGAATDATDYVPLAKAMDKAAKEIGINFIGGFSALVQKGYQKGDEILIESIPRALAETDFVCSSVNIGSTKSGINMTAVRDMGQIIKETAQLSEMGPAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGVVKRALEKVKGQSFDVVAETVKKTAFKITRIGQLVGSLASERLGVKFGIVDLSLAPTPAVGDSVARVLEEMGLETVGTHGTTAALALLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVEAGSLNLEKLEAMTAICSVGLDMIAIPEDTPAETIAAMIADEAAIGVINMKTTAVRLIPRGREGDTIEFGGLLGSAPVMSVNKNSSADFIARGGQIPAPIHSFKN
>NZ_CP029491.1|WP_002959526.1|154650_154917_+|ACT-domain-containing-protein
MKAIITVVGKDSQGIVAGVSAKIADLRLNIDDITQTILDEYFTMMAVVSSPEKKDFSLLRLELEKLGEQLGVKINIQSSAIFDAMHKL
>NZ_CP029491.1|WP_109833723.1|153650_154556_+|LysR-family-transcriptional-regulator
MNFQQCRYAQAIAEMGSFSQAAKKLFVTQPNLSASIKDLEEELGVQLFVRSNTGARLTDDGNDFVKYAKRIIGELDLLESRYQHNFRKSFTVASHHYDFLSLPLTQVVQSFQADYQEFQLIETTTKKILESVDNFESDIGIIYLDSNNRHILEKSLANQDLSFTSLGEFPTQVFLRRGHPLADRQVLTQEDLEGYPQVRFRQEKSGLHFDEDTLEVLDNQTIMYSNDRGTVMNLLTASDAYASGLGIVNGFIKEQIVLIPLADSPVHTLGYVTNNKRKNTPIMEAFIARVKESLVESENEE
>NZ_CP029491.1|WP_002961174.1|164107_165244_+|molecular-chaperone-DnaJ
MNNQEYYDRLGVSKDASQDEIKKAYRKMSKKYHPDINKEPGAEEKYKDIQEAYETLGDEQKRAAYDQYGPDGANFGGGGAGGFSGFDGAGFGGFEDIFSSFFGGGGASRNPSAPRQGDDLQYRLNLEFEEAIFGADKDVTYNREAECETCHGSGAKPGTSPITCSRCHGQGVINVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCDTCHGTGHEKKAHKVSVKVPAGVETGQQIRLSGQGEAGFNGGPYGDLFVIINVLPSKKFERDGSTIYYTLNISFAQAALGDTVEVPTVHGYVEMTIPEGTQTGKTFRLKGKGAPRLRGGSQGDQHVTINVVTPTKLNEAQKEALLALAAASGETSIRPKKKGFFDKVKDAFDGE
>NZ_CP029491.1|WP_109833410.1|165643_166417_+|tRNA-pseudouridine(38-40)-synthase-TruA
MVRYKAVISYDGTLFAGFQRQTKERSVQEELEKTLERLNSGQPVKVHGAGRTDSGVHAYGQVIHFDLPQARDEEKLRFGLDTQSPEDIDVVSIQQVPDDFHARYNPHSKTYEFLVDTGRPKNPMMRAYATHFPYTVDLAAMQDAIADLIGTHDFTGFTASGTSVQNKVRTITEAKVERDPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQVKTILAAKDRNLAGPTAAGNGLYLKEITYESKNSSDFRQ
>NZ_CP029491.1|WP_002961177.1|166382_167144_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSQKILAISGNDVFSGGGLYADLTTYTLNGLRGFLAVTCLTAMTEQGFQVFATDAKVFRAQLASLQKVDFAGVKLGLLPNVEVAEAALNFVRSRKDLPIVLDPVLVCKEKHDVAVSALRDELLQFLPYVSILTPNLAEAEILTGLSIKNLEDMKQAAQKLQAMGAKAVVVKGGNRLDSDQALDVYCDEKGLEVLSGPLSDKNNVGAGCTFASSIASQLVLGKEPLEAVKLAKEFVYQAILHSDDYGVVQAYDK
>NZ_CP029491.1|WP_109833411.1|167133_167604_+|ECF-transporter-S-component
MTSKKTRELTLLAILTALSLALGFIHIPSPTGFLTLIDTGIFFTAFYLGGKSGAVVGGLSAFLLDFLLAYPQYMFFSLFAHGLQGYFAGWTGVRRYLGLLLASLAMVGIYILAALVLGFGWGAALAGIWGNLSQNVLGLIVGAALYRAFSKAFPRK
>NZ_CP029491.1|WP_109833412.1|167612_168176_+|TIGR01440-family-protein
MDLQNLEKETRAIVRDILERSAIKQGQIFVLGLSSSEVAGGRIGQNSSLEIGQVIVKTILEETKLKGVHLAVQGCEHLNRALVVEEAVAESKGLEIVNVLPSLHAGGSGQLAAFDYMENPVEVEAVVAHAGLDIGDTFIGMHVKRVQVPLIPLQRELGGAHVTALAGRPKLIGGARAKYKADPIRKN
>NZ_CP029491.1|WP_109833413.1|168324_169173_-|mechanosensitive-ion-channel-family-protein
MSIFIKYWESLHFEDLAVNLLAKAIELALLVFAFIIGKQIANWAFDKFFSHSPRLLGQTEGRRKTLIKLFHNVMNYFLYFLLIYWILAILGLPVSSLLAGAGIAGLAIGLGAQGFLSDLVNGFFILIERQFDVGDSVTVDQVSGIVSSVGIRTTEIRDFDGTLHFIPNREILLVSNKSRGDMRAQIDIPIYASTNLDRVTQIIKEVNEIEVPNSPEIVGVPNVLGPRTASNGQFIFRVDIFVQNGQQAEIYSKFYRLYQEALLKDGISLPTPNTHIQPSQKS
>NZ_CP029491.1|WP_109833414.1|169415_170699_+|trigger-factor
MSVSFENTATNRGVLTFTISQEQIQPALDTAFNKVKKNLNVPGFRKGHMPRAVFNQKFGEEALYEDALNAILPTAYEAAVAESGLDVVAQPKIDVDSMEKGQDWSIKAEVVTKPEVKLGDYKNLEVSVEESKEVSDQDVNDKIERERKNLAELTIKDAAAENGDTVVIDFVGTVDGVEFDGGKGDNFSLELGSGQFIPGFEDQLVGAKAGDDVEVKVTFPADYQAEDLAGKDAVFATKVHEVKSKEVPELDDELAKDIDEEVETLDELKAKYRKELEAAKEIAYDDAVEGAAIEKAVENAEIIELPEEMVHDEVHRAMNEFLSNMQRQGISPEMYYQLTGTTEEDLYKQYEADADKRVRTNLVIEAIAAAEGFDATDEEIEKEITDLAAEYNMPADQVRSLLSADMLKHDITMKKAIEAITSSAKVK
>NZ_CP029491.1|WP_021673426.1|170892_171531_+|HAD-IA-family-hydrolase
MGLLVDTEYLDFQLQSGYLRSIASPSVTLGVKDFSSLVGRSGQDLLMQVRNLTQTEKTFAEITAGLKKIEAKKYHPDNYLPLFRQDIVPLLQYAKEQRLLLAVASSTALNYLLDILDNCGIRNYFDLIVSGEDFESSKPHPEIYLSVLKALHVAPEEAIAIEDSSAGIAAAKAAGMDVIAYEEKRFLIDQTQANLICKNMRAIFCHIKSLRK
>NZ_CP029491.1|WP_002961192.1|171621_172203_+|DNA-directed-RNA-polymerase-subunit-delta
MELKVFAGQEKSELSMIEVARAILESRGRDHEMYFSDLVNEIQNYLEKSDADIRQALPFFYSDLNTDGSFIPLGENRWGLRTWYAIDEIDEEVITLEENGENAPKRKRKRVNAFMDGDEDAIDYNDDDPEDEDNFTPTDVEYDDENPDDEKSEVESYDSEINEIIPDEEVSDDEDDVDLNESDDEDDDEAEND
>NZ_CP029491.1|WP_019775330.1|172495_174100_+|CTP-synthase
MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKEKIKRAATTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPATQGVKNKLAQFCDVAPEAVIESLDVDHIYQVPLNMQAQGMDQIVCDHLKLDVPKADMTEWSAMVDRVLNLKKSTRIALVGKYVELPDAYLSVVEALKHSGYVNDSAIDLKWVNANDVTAENVADLLGDVDGIIVPGGFGHRGTEGKIQTIRYARENDVPMLGICLGMQLTCVEFARHVLNMQGANSSELDPDTSYPVIDLMRDQVDVEDMGGTLRLGLYPCKLKPGSKAAAAYNNQEVVQRRHRHRYEFNTKYREAFEAAGFVFSGVSPDNRLMEVVELPDKKFFVAAQYHPELQSRPNRAEELYTAFVTAAVENAK

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Crispr_ID: NZ_CP029491_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029491_2

439629-439712

Orphan

Consensus_repeat	Method
CCAGGCTGTTTTGACACTTGCTAGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029491_2

>merge|NZ_CP029491|2|439629-439712|CRISPRCasFinder
CCAGGCTGTTTTGACACTTGCTAGGCAAGTTTCATTTCCAACTTTTGACAGTCTCCCAGACTGTTTTGACACTTGCTAGGCAAG

>NZ_CP029491|2|2|439629-439712|CRISPRCasFinder
CCAGGCTGTTTTGACACTTGCTAGGCAAG	TTTCATTTCCAACTTTTGACAGTCTC
CCAGACTGTTTTGACACTTGCTAGGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029491.1\|WP_019772629.1\|434071_435538_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP029491.1\|WP_019769840.1\|437904_439020_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|180482
NZ_CP029491.1\|WP_019777419.1\|440447_441323_+\|DUF3114-domain-containing-protein	unknown	unknown	gnl\|CDD\|337977
NZ_CP029491.1\|WP_019769120.1\|444932_446438_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|226584
NZ_CP029491.1\|WP_019769119.1\|444400_444556_+\|Sec23/Sec24-zinc-finger-containing-protein	unknown	unknown	unknown
NZ_CP029491.1\|WP_002960026.1\|433769_434072_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP029491.1\|WP_019776722.1\|427065_427623_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029491.1\|WP_109833458.1\|428676_431310_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|223650
NZ_CP029491.1\|WP_019769116.1\|442695_443412_+\|DUF4352-domain-containing-protein	unknown	unknown	gnl\|CDD\|367814
NZ_CP029491.1\|WP_004219408.1\|447580_448108_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
NZ_CP029491.1\|WP_019777422.1\|432827_433604_-\|conjugal-transfer-protein-TraX	unknown	unknown	gnl\|CDD\|368639
NZ_CP029491.1\|WP_109833459.1\|431608_432598_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP029491.1\|WP_019769115.1\|441391_442147_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|183775
NZ_CP029491.1\|WP_019777417.1\|446867_447128_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP029491.1\|WP_019777420.1\|435537_436980_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP029491.1\|WP_019769117.1\|443562_444174_+\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_CP029491.1\|WP_019769841.1\|436980_437181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029491.1\|WP_002962942.1\|427743_428445_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP029491.1\|WP_019777418.1\|446563_446875_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP029491.1\|WP_019770649.1\|447265_447364_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029491.1\|WP_019772629.1\|434071_435538_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP029491.1\|WP_019769840.1\|437904_439020_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|180482	PRK06233, PRK06233, vitamin B12 independent methionine synthase.	2.22157e-136
NZ_CP029491.1\|WP_019777419.1\|440447_441323_+\|DUF3114-domain-containing-protein	gnl\|CDD\|337977	pfam11311, DUF3114, Protein of unknown function (DUF3114). Some members in this family of proteins with unknown function are annotated as cytosolic proteins. This cannot be confirmed.	2.33675e-98
NZ_CP029491.1\|WP_019769120.1\|444932_446438_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|226584	COG4099, COG4099, Predicted peptidase [General function prediction only].	6.71363e-24
NZ_CP029491.1\|WP_002960026.1\|433769_434072_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	8.74272e-34
NZ_CP029491.1\|WP_019776722.1\|427065_427623_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.19863e-09
NZ_CP029491.1\|WP_109833458.1\|428676_431310_+\|FtsX-like-permease-family-protein	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.59116e-13
NZ_CP029491.1\|WP_004219408.1\|447580_448108_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	9.21876e-85
NZ_CP029491.1\|WP_019777422.1\|432827_433604_-\|conjugal-transfer-protein-TraX	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	3.67576e-22
NZ_CP029491.1\|WP_109833459.1\|431608_432598_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.63261e-77
NZ_CP029491.1\|WP_019769115.1\|441391_442147_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|183775	PRK12826, PRK12826, SDR family oxidoreductase.	1.15966e-94
NZ_CP029491.1\|WP_019777417.1\|446867_447128_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.3235e-06
NZ_CP029491.1\|WP_019777420.1\|435537_436980_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP029491.1\|WP_019769117.1\|443562_444174_+\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	3.20231e-05
NZ_CP029491.1\|WP_019769116.1\|442695_443412_+\|DUF4352-domain-containing-protein	gnl\|CDD\|367814	pfam04103, CD20, CD20-like family. This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulfide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton.	3.76914e-05
NZ_CP029491.1\|WP_002962942.1\|427743_428445_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.65538e-105
NZ_CP029491.1\|WP_019777418.1\|446563_446875_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.06172e-07

>NZ_CP029491.1|WP_019769840.1|437904_439020_+|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTKKYFEHVGSFLRPVELKEAREAFEAGKLSQEELTAVENRLITDLVDKQVAIGLEKITDGEFRRAYWHLDNFWGFDGVEHEHFGQGYLFHGEETGDDTAVLRGKLGFTKENHPFIAHYDFYKKLADERGVEAKITIPAPAQFLAELNRGKNAATVAEFYPSRQDFLRAIAEVYREEILALYETGARTVQLDDCTWGMLIDEDFWHTMAGAGFKKEDVIEEYLYVNNNAIKDLPSDLTINTHVCRGNFHSTYAAKGAYDDVAEAFFGRENARAYFLEYDNERSGGFEPLAAFKGLDKVAVLGLITTKDGQLEDKETIIQRIHEAAEILPLDQLWLATQCGFASTQEGNILTEEDQWKKLTLVKEIIDEVWG
>NZ_CP029491.1|WP_019769841.1|436980_437181_+|hypothetical-protein
MGALLVYLIFFLPMLMISYCFSIFQHFRVKAIAKRGQELRLWARSLGIEENRGSRGVILYTHYINF
>NZ_CP029491.1|WP_019777420.1|435537_436980_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MNFETIIGLEVHVELNTNSKIFSPSSAHFGENPNANTNVIDWSFPGVLPVMNKGVIDAGIKAALALNMDIHQTMHFDRKNYFYPDNPKAYQISQFDEPIGYNGWLEAQLDDGSIKKIRIERAHLEEDAGKNTHADDGYSYVDLNRQGVPLIEIVSEADMRSPEEAYAYLTTLKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEEFGTKTELKNLNSFSNVRKGLEYEVERQAKILRSGGVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPIFEISDDWIEEMRGKLPEFARDRRARYVSQYGLSDYDANQLTASKATSDFFEAAVGLGGDAKQVSNWLQGEVAQFLNSENKNLEDIQLTPDNLVEMLGLIEDSTISSKIAKKVFVHLAKNGDGARDYVEKAGLVQISDPEILIPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVALKLLAQELAKLKEE
>NZ_CP029491.1|WP_019772629.1|434071_435538_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSFNDKTIEELHDLLVKKEISATELTQATLEDINAREETIGSFITVAQEEALAQAKSLDEQGIDADNVLSGIPLAVKDNISTKGILTTAASKMLYNYEPIFDATAVANAKQKGMIVVGKTNMDEFAMGGSTETSYFKKTKNAWDQSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRFGLIAFGSSLDQIGPFAQTVKENAQVLNAIASEDKKDSTSAPVRISDYTSKIGQDIKGMRIALPKEYLGKGIDPQIKDNVLAAAKQFEKLGAVVEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGVRYGFRADDANSLEDIYVKTRSQGFGDEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFADYDLILGPTSPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGISLPSGFVDGLPVGLQLIGPKYGEETIYQAAAAFEAVTDYHKQRPKIFGGDH
>NZ_CP029491.1|WP_002960026.1|433769_434072_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MKISEEEVRHVATLSKLAFSDEETTEFATTLTKIVDMVELLNEVDTTGVAITTTMADRRTVLRPDVAEEGTDRDQLFKNVPEAKDYYIKVPAILDDGGDA
>NZ_CP029491.1|WP_019777422.1|432827_433604_-|conjugal-transfer-protein-TraX
MKKSIGLNTNQLKYIALSFMVLDSAFFAFPGLPAWLHLITRFVAPLFAYLTLEGFFHTRNRKRHLLRLWSVAILMQIGDFLSQLLLGKEHLINDNIFLTLALGYSFLYFWQKARDHDRPILNSVLGSLIFLASLFLSLIGLPFGAMVITLEGGIPILTLMLIFWAFYDHRRKQLIVFGIWSVISFLILGPDMNVSAAPSFSVWFEMFCYNSDCMSFLFLPFLFLYNGQKGSSKPIHKWFFYIFYPLHLWILHLLAFFL
>NZ_CP029491.1|WP_109833459.1|431608_432598_-|IS30-family-transposase
MSTTNCTTKQPYCHLSEVERGKIEAFLSEGVKPAEIARRLGKSRSTISREIKRGTTKQVKQVNGKKVYFDHYFADLAQRRYVEGRQGIYYLKLEKVSEHFLKAFEEAMKASPRVHSVESFVYAYKEEHPSETVPSTKTLYNYSHQGLLAIKAIDFPKAVRLRKKTKKRSSTQKHLGVSIEERPETINDRSVFGHWEIDSVLGTQKAGEPSILTLVERKTRYAITAYLAGKKAEDVNEAVAELIQQYPIKSITADNGSEFASLNELEGVQVYYAHAYSSYERGTNENFNGLLREFVPKGKSLKTLTAEDLAKATLAINQRPRRLLNYQTA
>NZ_CP029491.1|WP_109833458.1|428676_431310_+|FtsX-like-permease-family-protein
MKKRIYWKTVWNTMLHSKGRFLSIMLLMFLGSFTFVGLKVTKPNMQKLATDYLQAHQTADLFVTAHYGFSQADQTELKNIKGADVEFGKVSDMTIEGTDDAMRVFSNSQSISTYQLERGRFPKEADEIALTSSLRKKYKIGDTLIFESSKKSNLKMKEFKIVGFINSSEIWSTLNLGSSTAGDGTLASYGIVSSSAFADNSNTLARIRYDRLKKISPFSDVYSSKINHYQDELDKLLEDNGQERLRELKKKPQEKVNQSKQALTAAKEQLQEQTRALTSASPDQQQLVQRSLAQARQTIAQKEQQIQEAQAKIDAMPKPTYTTSTRSTMLGGEGYTVYSSNADSMGNLGNIFPIVLYAVAALVTFTTMTRFVDEERTNSGLFRALGYSKQDVIRKFLIYGLVASMLGTVLGIIGGHYLLSRIVSQIFTGKMTLGSPALSFYWSYTLIAVLLALVSAVLPVYLIASRELSENTAQLLLPKPPMRGAKIFLERIGFIWNRLSFTHKVTVRNIFRYKQRMLMTIFGVAGSVALLFAGLGIQSSLGKVIREQFTQLTPYHLVVMKKETDEKDKPLSDFLKSKEVDSYQSLYYTHLTEEIPQLKDRQSIALMVTNRTDFDGFVQLKDANSNRTLTLPKTGVLISEKLARFYKVQAGETFRLKDSDGKERRVKVAAVVKMNAGHYLFMSQSAYQDIFGEKPDNNAYFINLKDDSASQIKDVSTELLAMNSVVSVTQNTSRMKMIKTIVTSLNAAMTVLVIITVLLAIVILYNLTNINIAERLRELSTIKVLGFFNREVTLYIYRETIVLSLIGIVLGLGAGRYLHQSIMEMIGSDNVSFGTVVDETVYVIPIIFIGLILVGLGLIVHHRLKNLDMLEALQSVE
>NZ_CP029491.1|WP_002962942.1|427743_428445_+|ABC-transporter-ATP-binding-protein
MAYIEMKHSYKRYQMGETEIIANNDISFEINKGELVIILGASGAGKSTVLNILGGMDSNDEGQVLIDGNNIAAFNQKQLTAYRRSDVGFVFQFYNLVPNLTAKENVELASEIVDDAKDAALTLHEVGLGSRLNNFPAQLSGGEQQRVAIARALAKNPKLLLCDEPTGALDYQTGKQILKLLQNMSHQKGTTVIIVTHNASLAPIADRVIYLHDAKVNAINTNDWPQDIDTLEY
>NZ_CP029491.1|WP_019776722.1|427065_427623_-|TetR/AcrR-family-transcriptional-regulator
MTQKRHTQSKAKIKAAITELLLENNDFSSITIRQITEKANINRSTFYLHYQDKYDLIDKLMHEITDNLRKELNTNSATVKEGLIHSLTYLQSQQGFIKLIIGIAPVNFSQKTRHFISKLIETTPALFYDILNPDLPLPKDYMLTTYAASIESIYTHWVSTDNQASPEEVANMILTVRRFYQKNDD
>NZ_CP029491.1|WP_019777419.1|440447_441323_+|DUF3114-domain-containing-protein
MPKIGSAAFWSGWKEMKNDKDPCRALRFVLDQLDLPQDLSGDLTENQALVAKFSPDLAPHDRFWSDLARQVRLVMKGKDFQEKTEFNRQLHQLRYVISSQQAQYVRQHYRKSGRTDQEALFAYLRANHLRPSLWDNARLHNKRQIKDGTFCFPDEQESYNIKVLLQFRTEFIIDGQGNFLNEVDAEKVTANGIINGASFNYGNTTKSHFRLDVCPVGPHDPAFRNQATKGYRSPNRTGRVRLARFWQERRTADFDRSLYNKNGGYAKDGQALISLIKQEKKAFKKALRARK
>NZ_CP029491.1|WP_019769115.1|441391_442147_-|3-oxoacyl-ACP-reductase-FabG
MFQLTNQIAVVTGGAKGIGRGIASVLHQQGAKVIILDKDQAAGQATAKNLGADFYSFNVTDSQGIAQTFQMIAEKYGRLDILCSNIGIYPQAKIADMSEAEWDLIQTVNLKGTFLVVKAAAKIMRHQGYGRIVLTSSITGPITGYPGWAHYGSTKAGQLGFMRSAALEYAKAGITINAVQPGNVLTEGLKTQGESYLNEMKKTVPTHTLGAPEDIGTAVAFLASKEAHYITGQTIVVDGGQILPESFDAIL
>NZ_CP029491.1|WP_019769116.1|442695_443412_+|DUF4352-domain-containing-protein
MKPIKEDEKKVLGIIALVFGGIALVTSWMPFINNASAVLAIIAFILGVIAFFINLKRKKLLSLISIMIAVISFIIVLVTQASYVATIDNALGKNDKPTSQSEKDSSSISSSSESKKTYKVGDKITFKGKVEYTITSVEWTDERNEIEDNQPKKVLKVTYNVKNLSDDDYVIGSDFELYANGTKMESYPNDNTFETISAGRSYSGATEHFAVNSDKDLELEIKPYLSFKGTPAIIPLES
>NZ_CP029491.1|WP_019769117.1|443562_444174_+|DUF4230-domain-containing-protein
MMIKKIFSYLLWVVGIVFVIAVVMSSGIMDSFFEQRPTTKVSTSVTSLEKVNQITFLNVGIQKVVTSTETTKVLFTDLDIPYSEKEVSIILNYKAKFGIKKHVTVKELKKSRFKVIIPKFEVIGFELDKDKPYQLYSSSKGLLSDSTKDVDTGKLVTDSLSNKEQEEYLNQYKDLARESAKEYYKKVLTSFNKDAKVECEFEE
>NZ_CP029491.1|WP_019769119.1|444400_444556_+|Sec23/Sec24-zinc-finger-containing-protein
MSQRFPDINWYCDMCDAYLNDQEGFDDHKYVWKCAECGYKNSISSDNIVDI
>NZ_CP029491.1|WP_019769120.1|444932_446438_+|prolyl-oligopeptidase-family-serine-peptidase
MSKKKIAIGIGVLALGLLIAAGLVFRGGSKVTIDKVSLGVKGYEFGPAVHKLVVDLDDSVSHVSQEDLSVTTAGVEQKVEKVYLSDANGNPTSKKSSPYVTIQLPVSFDSKKSAAVASPFQFDLDDFHNHWVTDYTVSIKGLKVTKGGKTSTLNHHANDIDNRISTQTDVFNKCGDFTGNYTNPITHLKENLTLRYAAYEPKSLAGGEKKPLLIWLHGQGEGGDDLDVTLLGNEVTALAQKDIQNHFRTGKTKGAYVLAVESPTYWMDEGDGTNGAGSGNSRYTQALMATIKKYVASNPNIDTKRIYLSGGSNGGYMTLNMAVHYPDYFSALVPQSAAYSYYNYERNADGTYKTVESKDSLSGYANVRTDDVYFDADKIAALKDIPIWFVHAENDKVVNPKLYALPVYKALLDSGAKNKWFSFFKSVEGSDMKGTTYNGHWSWTYYFNDKVKGVQDVQKISSQDDLSGFQADNKSAGGTSQAKVAGKTYDNLFDWLNDQHK
>NZ_CP029491.1|WP_019777418.1|446563_446875_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTKENYQLRFLPLFEKDLNAIVDYISQSLQNPRAAHDLLNAVERADTRLARPLAFPAYPSLNERRHPYYYIRVRNFIIFYVVLGNTMEVRRILYSKRNFEDLL
>NZ_CP029491.1|WP_019777417.1|446867_447128_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MINIRPVSDLRNKFPEIEETVIQSNDPVFLTKNGYGTMVLMSLEQYDDLTSSLEKKLDEADLVAEESSVRYNKDELFKRVRSRIDD
>NZ_CP029491.1|WP_019770649.1|447265_447364_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MWKDLFLSIVAPTLVGIVLALFSKWLNGKDDD
>NZ_CP029491.1|WP_004219408.1|447580_448108_+|YqeG-family-HAD-IIIA-type-phosphatase
MSIEDYLPTFAVEAVYDLKPESLRKHGISAVLVDLDNTLIAWDNPDGTPELREWLDDMTEADIPVVVVSNNKHERVKRAVDPFHVDFISRAMKPFTRGINKAIERYNFNRDEVVLVGDQLMTDIRACHRAGIRSILVKPLVTSDAWNTKFNRARERRVLKKITQKYGPIEYQKEI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029491_1	1.1\|163568\|25\|NZ_CP029491\|CRISPRCasFinder	163568-163592	25	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	23844-23868	3	0.88
NZ_CP029491_2	2.1\|439658\|26\|NZ_CP029491\|CRISPRCasFinder	439658-439683	26	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	159084-159109	6	0.769

1. spacer 1.1|163568|25|NZ_CP029491|CRISPRCasFinder matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 3, identity: 0.88

gagcttgaaaactgggaagcgaggc	CRISPR spacer
gagcttgataactgggaagcgatac	Protospacer
******** ************* .*

2. spacer 2.1|439658|26|NZ_CP029491|CRISPRCasFinder matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 6, identity: 0.769

tttcatttccaacttttgacagtctc	CRISPR spacer
tttcatttacaacttttgacatctct	Protospacer
******** ************ ....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

49207 : 57776

Mollivirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019786617.1\|49207_50653_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-58	34.2
WP_019782473.1\|50721_51741_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	1.8e-63	44.0
WP_109833390.1\|51740_52307_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.8e-26	36.9
WP_029236929.1\|52554_53049_+	hypothetical protein	NA	NA	NA	NA
WP_109833391.1\|53045_54593_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-78	50.2
WP_109833392.1\|54796_55336_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019777363.1\|55489_55999_+	HXXEE domain-containing protein	NA	NA	NA	NA
WP_019777364.1\|56232_57414_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	4.4e-05	39.7
WP_002959577.1\|57542_57776_+	hypothetical protein	A0A1X9I609	Streptococcus_phage	3.6e-12	54.1

DBSCAN-SWA_2

1008798 : 1019388

Bacillus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019777321.1\|1008798_1010004_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	6.9e-38	47.3
WP_019777320.1\|1010105_1011992_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.6e-65	32.7
WP_019777319.1\|1012055_1012469_+	hypothetical protein	NA	NA	NA	NA
WP_019777318.1\|1012778_1014515_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-36	24.9
WP_109833551.1\|1014764_1016516_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.6e-57	30.0
WP_002963402.1\|1016683_1017448_-	NUDIX hydrolase	G3MA14	Bacillus_virus	2.2e-21	33.2
WP_019777315.1\|1017444_1018266_-	nicotinamide mononucleotide transporter	A0A1C9LW09	Vibrio_phage	1.1e-15	30.1
WP_109833552.1\|1018281_1019388_-	AAA family ATPase	A0A2K9VDE3	Lactobacillus_phage	1.7e-75	41.5

DBSCAN-SWA_3

1147198 : 1202800

Bacillus_virus(10.0%)

bacteriocin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019770178.1\|1147198_1147354_+\|transposase	transposase	NA	NA	NA	NA
WP_002262825.1\|1147580_1147949_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_002961902.1\|1148021_1148522_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_109833580.1\|1148851_1149823_-	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_109833581.1\|1149876_1151250_-	amino acid permease	NA	NA	NA	NA
WP_109833582.1\|1151557_1152157_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_109833583.1\|1152166_1153399_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.9e-134	59.2
WP_019771146.1\|1153613_1154123_-	dihydrofolate reductase	A0A1B2IFI7	Erwinia_phage	2.4e-16	32.1
WP_019775453.1\|1154206_1155046_-	thymidylate synthase	U5J9N5	Bacillus_phage	2.1e-81	52.5
WP_109833584.1\|1155245_1156412_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_019777081.1\|1156417_1157329_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_002963151.1\|1157481_1158372_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_019777080.1\|1158567_1159413_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_002963157.1\|1159559_1159946_+	hypothetical protein	NA	NA	NA	NA
WP_002963158.1\|1160042_1160225_-	hypothetical protein	NA	NA	NA	NA
WP_109833585.1\|1160244_1161003_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002963160.1\|1161137_1162121_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_019777079.1\|1162137_1163028_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_019771073.1\|1163024_1163867_-	NAD kinase	NA	NA	NA	NA
WP_002963163.1\|1163841_1164507_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_002963164.1\|1164635_1165208_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_002963254.1\|1165894_1166860_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	1.6e-37	35.1
WP_002963252.1\|1166861_1167983_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	3.1e-24	27.2
WP_019790516.1\|1167992_1168340_+	DUF1831 domain-containing protein	NA	NA	NA	NA
WP_002963248.1\|1168619_1169258_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_002963247.1\|1169338_1170031_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_019769661.1\|1170172_1170868_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.1e-14	26.1
WP_109833586.1\|1171034_1172993_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_019775635.1\|1172989_1173901_-	1-phosphofructokinase	NA	NA	NA	NA
WP_002963242.1\|1173897_1174611_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_019772587.1\|1175016_1175721_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_109833587.1\|1176663_1177662_-	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	2.3e-31	54.0
WP_109833588.1\|1177654_1178395_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_109833589.1\|1178384_1178906_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_109833590.1\|1179950_1181526_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	2.8e-55	50.4
WP_002963266.1\|1181652_1181856_+	CsbD family protein	NA	NA	NA	NA
WP_002960705.1\|1182697_1183675_-	BtrH N-terminal domain-containing protein	NA	NA	NA	NA
WP_002960707.1\|1183706_1184240_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_002960709.1\|1184236_1184881_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_002960710.1\|1185469_1185709_-	KH domain-containing protein	NA	NA	NA	NA
WP_002960712.1\|1185720_1185993_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_080566235.1\|1186158_1186470_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019790485.1\|1186568_1186916_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002960723.1\|1187261_1188074_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002960725.1\|1188138_1188984_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_019785390.1\|1188967_1190188_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_019771636.1\|1190666_1191908_-	ABC transporter permease	NA	NA	NA	NA
WP_109833591.1\|1191920_1192625_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-31	38.5
WP_019768633.1\|1192630_1193782_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002960733.1\|1194202_1194667_-	hypothetical protein	NA	NA	NA	NA
WP_019777869.1\|1195557_1195815_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_019777868.1\|1195970_1196411_-	hypothetical protein	NA	NA	NA	NA
WP_019786472.1\|1196507_1196861_-	hypothetical protein	NA	NA	NA	NA
WP_019773605.1\|1197271_1197697_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	3.4e-16	35.2
WP_109833592.1\|1197980_1199015_-	thiol reductase thioredoxin	NA	NA	NA	NA
WP_019771643.1\|1199057_1199468_-	hypothetical protein	NA	NA	NA	NA
WP_019768643.1\|1199499_1199643_-	hypothetical protein	NA	NA	NA	NA
WP_019770704.1\|1202395_1202581_-	hypothetical protein	NA	NA	NA	NA
WP_019770705.1\|1202608_1202800_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_4

1764934 : 1839882

Streptococcus_phage(20.0%)

bacteriocin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002963348.1\|1764934_1765525_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.3e-53	54.1
WP_002963394.1\|1766063_1766693_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002960338.1\|1767096_1768251_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_019781403.1\|1768343_1769438_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_019777436.1\|1769579_1770677_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019786840.1\|1770780_1772127_+	MFS transporter	NA	NA	NA	NA
WP_019790892.1\|1772242_1773871_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_019769586.1\|1774203_1775655_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_019769587.1\|1776190_1776976_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	8.0e-19	32.9
WP_002960352.1\|1776997_1777924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_109833660.1\|1777937_1778963_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	8.2e-16	25.6
WP_019777442.1\|1778962_1779958_+	iron ABC transporter permease	NA	NA	NA	NA
WP_002960182.1\|1780092_1780740_+	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_109833661.1\|1780814_1781471_-	DUF1803 domain-containing protein	NA	NA	NA	NA
WP_002960186.1\|1781507_1782005_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_019770022.1\|1782053_1782389_-	YrdB family protein	NA	NA	NA	NA
WP_002960191.1\|1782395_1782977_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002960193.1\|1782966_1783704_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_109833662.1\|1785519_1786074_-	L-2-amino-thiazoline-4-carboxylic acid hydrolase	NA	NA	NA	NA
WP_002961651.1\|1786270_1787206_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_019777730.1\|1787286_1787928_-	hypothetical protein	NA	NA	NA	NA
WP_109833663.1\|1788380_1790552_-	GBS Bsp-like repeat-containing protein	NA	NA	NA	NA
WP_019770658.1\|1790717_1791293_-	hypothetical protein	NA	NA	NA	NA
WP_109833664.1\|1791495_1792848_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.0e-74	34.5
WP_109833665.1\|1793113_1793890_+	recombination regulator RecX	NA	NA	NA	NA
WP_002961640.1\|1793995_1794529_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_019773382.1\|1794677_1795613_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3
WP_002960280.1\|1807529_1808078_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_019769628.1\|1808153_1808822_-	ComF family protein	NA	NA	NA	NA
WP_019769629.1\|1808821_1810120_-	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	3.8e-127	51.9
WP_109833666.1\|1810166_1810805_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.6e-65	61.7
WP_019769631.1\|1810904_1811834_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	5.3e-139	78.8
WP_019771104.1\|1812052_1812403_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_019771105.1\|1812402_1813800_-	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.3e-24	41.3
WP_002960293.1\|1813903_1814545_-	response regulator transcription factor	NA	NA	NA	NA
WP_002960295.1\|1814531_1815575_-	sensor histidine kinase	NA	NA	NA	NA
WP_019770059.1\|1815571_1816270_-	transporter	NA	NA	NA	NA
WP_019775539.1\|1816747_1818622_-	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	1.3e-22	35.8
WP_002960300.1\|1818618_1819362_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_019791793.1\|1819511_1820837_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_019769792.1\|1820820_1821756_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.2e-10	38.1
WP_109833667.1\|1822057_1824442_-	primosomal protein N'	NA	NA	NA	NA
WP_002961559.1\|1825227_1825545_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_019777947.1\|1825567_1826182_-	guanylate kinase	U5J9X2	Bacillus_phage	2.2e-16	34.4
WP_109833668.1\|1826394_1827414_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.9e-34	33.9
WP_019777817.1\|1827495_1828656_-	XRE family transcriptional regulator	A0A0A7RTT7	Clostridium_phage	4.2e-32	29.3
WP_019777818.1\|1828680_1829415_-	hypothetical protein	NA	NA	NA	NA
WP_019777819.1\|1829527_1831654_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_019777820.1\|1831650_1832556_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_002961563.1\|1833478_1834423_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_019771944.1\|1834452_1835142_+	DUF1129 family protein	NA	NA	NA	NA
WP_002961569.1\|1835571_1835811_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_019777833.1\|1835868_1836351_-	single-stranded DNA-binding protein	A0A191KBQ2	Streptococcus_virus	3.7e-59	73.3
WP_002961573.1\|1836362_1836653_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_019769837.1\|1838552_1838729_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019771033.1\|1838748_1838934_-	hypothetical protein	NA	NA	NA	NA
WP_019769835.1\|1839016_1839190_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019769836.1\|1839211_1839397_-	hypothetical protein	NA	NA	NA	NA
WP_002963416.1\|1839690_1839882_-\|bacteriocin	bacteriocin	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029491

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection