CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029490	Streptococcus sobrinus strain SL1 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,RT,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029490_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029490_1

171961-172031

Orphan

Consensus_repeat	Method
GGTTCGGGGAACCTTTTTATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029490_1

>merge|NZ_CP029490|1|171961-172031|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCCGAGCTTGAAAACTGGGAAGCGAGGCGGTTTGGGGAACCTTTTTATCCC

>NZ_CP029490|1|1|171961-172031|CRISPRCasFinder
GGTTCGGGGAACCTTTTTATCCC	GAGCTTGAAAACTGGGAAGCGAGGC
GGTTTGGGGAACCTTTTTATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029490.1\|WP_002961192.1\|180037_180619_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|225880
NZ_CP029490.1\|WP_002961174.1\|172523_173660_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653
NZ_CP029490.1\|WP_002961172.1\|169313_169865_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237628
NZ_CP029490.1\|WP_002961168.1\|165888_166590_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP029490.1\|WP_002961167.1\|165318_165750_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029490.1\|WP_019777566.1\|174059_174833_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP029490.1\|WP_002961171.1\|168259_169294_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP029490.1\|WP_002961173.1\|170121_171957_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP029490.1\|WP_002961169.1\|166576_167344_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NZ_CP029490.1\|WP_002959528.1\|162287_163625_+\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_CP029490.1\|WP_002961185.1\|177831_179115_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP029490.1\|WP_028798558.1\|180911_182516_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP029490.1\|WP_019773382.1\|164192_165128_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP029490.1\|WP_002961170.1\|167508_168093_+\|N-acetylmuramidase	unknown	unknown	gnl\|CDD\|224619
NZ_CP029490.1\|WP_021673426.1\|179308_179947_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319859
NZ_CP029490.1\|WP_002961183.1\|176740_177589_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP029490.1\|WP_002959526.1\|162009_162276_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_CP029490.1\|WP_002961179.1\|175549_176020_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227064
NZ_CP029490.1\|WP_002961177.1\|174798_175560_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|183513
NZ_CP029490.1\|WP_002961181.1\|176028_176592_+\|TIGR01440-family-protein	unknown	unknown	gnl\|CDD\|237472

Protein	Function_ID	Function_description	E-value
NZ_CP029490.1\|WP_002961192.1\|180037_180619_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|225880	COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription].	1.06384e-30
NZ_CP029490.1\|WP_002961174.1\|172523_173660_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0
NZ_CP029490.1\|WP_002961172.1\|169313_169865_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237628	PRK14156, PRK14156, heat shock protein GrpE; Provisional.	5.3205e-87
NZ_CP029490.1\|WP_002961168.1\|165888_166590_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.99833e-48
NZ_CP029490.1\|WP_002961167.1\|165318_165750_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.14951e-14
NZ_CP029490.1\|WP_019777566.1\|174059_174833_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.10115e-128
NZ_CP029490.1\|WP_002961171.1\|168259_169294_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.40319e-106
NZ_CP029490.1\|WP_002961173.1\|170121_171957_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP029490.1\|WP_002961169.1\|166576_167344_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	1.42807e-50
NZ_CP029490.1\|WP_002959528.1\|162287_163625_+\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_CP029490.1\|WP_002961185.1\|177831_179115_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.03145e-160
NZ_CP029490.1\|WP_028798558.1\|180911_182516_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP029490.1\|WP_019773382.1\|164192_165128_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.37168e-104
NZ_CP029490.1\|WP_002961170.1\|167508_168093_+\|N-acetylmuramidase	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.69131e-38
NZ_CP029490.1\|WP_021673426.1\|179308_179947_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.73093e-33
NZ_CP029490.1\|WP_002961183.1\|176740_177589_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.12378e-40
NZ_CP029490.1\|WP_002959526.1\|162009_162276_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	7.95131e-41
NZ_CP029490.1\|WP_002961179.1\|175549_176020_+\|hypothetical-protein	gnl\|CDD\|227064	COG4720, COG4720, Predicted membrane protein [Function unknown].	1.18268e-28
NZ_CP029490.1\|WP_002961177.1\|174798_175560_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|183513	PRK12413, PRK12413, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	2.70052e-150
NZ_CP029490.1\|WP_002961181.1\|176028_176592_+\|TIGR01440-family-protein	gnl\|CDD\|237472	PRK13690, PRK13690, hypothetical protein; Provisional.	5.65217e-107

>NZ_CP029490.1|WP_002961173.1|170121_171957_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKNGEIIVGDAAKRQAVTNPDTVISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAEDYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTEKDEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDYLVDEFKKENGIDLSTDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGDAGPLHLEVSLTRAKFDDLTRDLVDRTKTPVRRALSDAGLSLSEIDEVILVGGSTRIPAVVEVVKAETGKEPNKSVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGVPQIEVTFDIDKNGIVSVKAKDLGTQKEQHIVIKSNDGLSEDEIERMMKDAEANADADAKRKEEVDLKNEVDQAIFATEKTIKETEGKGFDTERDAAKTALDDLKKAQESGNTDDMKAKLETLNEKAQALAVKLYEQAAAAQQAAGGDQAADANDAGSKDSGDDVVDGEFTEK
>NZ_CP029490.1|WP_002961172.1|169313_169865_+|nucleotide-exchange-factor-GrpE
MSEDIKKEKEEDVTQEAPSSEAEEKQQAQEATPEEATEKTELAAALEKVEDFENKFLRAHAEMQNIQRRANEERQQLQKYRSQDLAKGVLPSLDNLERALAVEGLSDDVKKGIEMVQESLLQALKEEGVEEVPVDSFDHNFHMAVQTLPADDDHPADSIAQVLQKGYQLHDRLLRPAMVVVYN
>NZ_CP029490.1|WP_002961171.1|168259_169294_+|heat-inducible-transcriptional-repressor-HrcA
MITQRQNDILSIIVELFTQTHEPVGSKALQAYISTSSATIRNDMAILEKIGLLEKAHTSSGRLPSRQGFQYYVSHLLNLESVDEEDAYQVIKAFDFEFFKLEDVLKKAGDVLADLTECTAITLDVEPSNQRLSAFDIVKLSHHDALAVMTFDDSNTVTSQFAIPKNFLDEDLLVVSQLVRERFLGQTVMEIHYRIRTEIPQIVQRYFKITDNVLELFEHIFKEMFVEKLFLSGKENLLKYSDDQTYRLLDNTQELALTIRRQFQEEQAYVIRLADENKQGLEALSQLSYKFLIPYRGFGNLTLLGPVTIDYRRSMGLLNVVSRVLTMKLADFYRYLSSNHYEVH
>NZ_CP029490.1|WP_002961170.1|167508_168093_+|N-acetylmuramidase
MQSRLKFRPFMIVFGLVLALVLLPLLLNMRTKAANTKVTSTYSQASFIKEVAPVAQKLSKAYGVKASVLIAQVAQSTDYGSNLLAVRYHNYLGVLAQPGDARIVLTTQSYEKGKWETVKQPYKIYENWQDSLYDYMEEISAGMWGKQLYTTLATTEEYTTAARALQKAGVDTDPEYANKLIAIIQGKNLTQYDK
>NZ_CP029490.1|WP_002961169.1|166576_167344_+|D-alanyl-D-alanine-carboxypeptidase-family-protein
MNKRSRQFLMIFFAVLVIIFGFAYFHDRKASQQSKGTSSQTTKTKQVTRAAGSSSDNNSSASGSDLPDVSADDWQLIVVNRDNITKELNPDLTTIDNIKVDSRIADNVKEFLAAAQKIDSKEHLISGYRSVAYQKELFDSYVKQEMSNDPSLSESQAEDKVKTYSQPAGASEHQTGLAIDMSTVDSLNESDPTVVEQLKKIAPDYGFVLRFEQGKSDSTGVDYEDWHFRYVGKASAKYMTEHNLSLEEYVAQLKK
>NZ_CP029490.1|WP_002961168.1|165888_166590_+|histidine-phosphatase-family-protein
MAKTRLFIARHGKTMFNTIGRAQGWSDTPLTKEGERGIQELGLGLKEAGLHFVAAYSSDSGRTLQTMEIILRELGQETIPYKRDKRIREWCFGSLDGGYDAELFNGVIPRVFDKPVEEMTYQDMANAIMAVDTAGWAEPWEALKNRIITGFSDIAKEVQAKGGGDAIVVSHGMTIATLIGLIDPSQPRSLALDNGSICQLTYEDGDLHIEAIGDMSYRQKGREILEKEANEQA
>NZ_CP029490.1|WP_002961167.1|165318_165750_-|MarR-family-transcriptional-regulator
MDLNQSLGFLLNSGAKLMKRQLDSKLRAYQITSSQWAVLKLLSQNDKLSQVEIAQAIKTDKATCGAIIDKLIKKEFVKRTISQQDQRARIIEISPLALSVTDELTSLDEETNTEALMGIKQKEQEIFIKTLEQLIINLENKEI
>NZ_CP029490.1|WP_019773382.1|164192_165128_-|IS30-family-transposase
MSYSHLTITDRIKIETYLELGLKPCQIANKLGVHKSTISRELRRCQNGYSAALAQEQYDHRAKQKGRKSRLTPKLKKEIEDGLKSSWSPEQICGRYQLEQKPMVAFKTIYNWLYAALIDLDLSVLRRKGKTRQPKETRGTFRIGTSIAKRPKEVRNRETFGHWELDTVVSSRGKSKGCLATFLERKTRFYLAFKIPDRTAKSMFSAIEQLCKLFPKEALKTFTSDRGKEFACYPLVENLGISFFFADAYSSWQRGSNENANGLLREYFPKKTDLAAISDEVLNKALYDINHRPRKCLAYRTASEALEDEFK
>NZ_CP029490.1|WP_002959528.1|162287_163625_+|PFL-family-protein
MDIQQVTETIAMIEEQNFDVRTITMGISLLDCIDPDINRAADKVYRKIVDKAANLVAVGDEISAELGIPIVNKRVSVTPISIIGAATDATDYVPLAKAMDKAAKEIGINFIGGFSALVQKGYQKGDEILIESIPRALAETDFVCSSVNIGSTKSGINMTAVRDMGQIIKETAQLSEMGPAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGVVKRALEKVKGQSFDVVAETVKKTAFKITRIGQLVGSLASERLGVKFGIVDLSLAPTPAVGDSVARVLEEMGLETVGTHGTTAALALLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVEAGSLNLEKLEAMTAICSVGLDMIAIPEDTPAETIAAMIADEAAIGVINMKTTAVRLIPRGREGDTIEFGGLLGSAPVMSVNKNSSADFIARGGQIPAPIHSFKN
>NZ_CP029490.1|WP_002959526.1|162009_162276_+|ACT-domain-containing-protein
MKAIITVVGKDSQGIVAGVSAKIADLRLNIDDITQTILDEYFTMMAVVSSPEKKDFSLLRLELEKLGEQLGVKINIQSSAIFDAMHKL
>NZ_CP029490.1|WP_002961174.1|172523_173660_+|molecular-chaperone-DnaJ
MNNQEYYDRLGVSKDASQDEIKKAYRKMSKKYHPDINKEPGAEEKYKDIQEAYETLGDEQKRAAYDQYGPDGANFGGGGAGGFSGFDGAGFGGFEDIFSSFFGGGGASRNPSAPRQGDDLQYRLNLEFEEAIFGADKDVTYNREAECETCHGSGAKPGTSPITCSRCHGQGVINVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCDTCHGTGHEKKAHKVSVKVPAGVETGQQIRLSGQGEAGFNGGPYGDLFVIINVLPSKKFERDGSTIYYTLNISFAQAALGDTVEVPTVHGYVEMTIPEGTQTGKTFRLKGKGAPRLRGGSQGDQHVTINVVTPTKLNEAQKEALLALAAASGETSIRPKKKGFFDKVKDAFDGE
>NZ_CP029490.1|WP_019777566.1|174059_174833_+|tRNA-pseudouridine(38-40)-synthase-TruA
MVRYKAVISYDGTLFAGFQHQTKERSVQEELEKTLERLNSGQPVKVHGAGRTDSGVHAYGQVIHFDLPQARDEEKLRFGLDTQSPEDIDVVSIQQVPDDFHARYNPHSKTYEFLVDTGRPKNPMMRAYATHFPYTVDLAAMQDAIADLIGTHDFTGFTASGTSVQNKVRTITEAKVERDPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQVKTILAAKDRNLAGPTAAGNGLYLKEITYESKNSSDFRQ
>NZ_CP029490.1|WP_002961177.1|174798_175560_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSQKILAISGNDVFSGGGLYADLTTYTLNGLRGFLAVTCLTAMTEQGFQVFATDAKVFRAQLASLQKVDFAGVKLGLLPNVEVAEAALNFVRSRKDLPIVLDPVLVCKEKHDVAVSALRDELLQFLPYVSILTPNLAEAEILTGLSIKNLEDMKQAAQKLQAMGAKAVVVKGGNRLDSDQALDVYCDEKGLEVLSGPLSDKNNVGAGCTFASSIASQLVLGKEPLEAVKLAKEFVYQAILHSDDYGVVQAYDK
>NZ_CP029490.1|WP_002961179.1|175549_176020_+|hypothetical-protein
MTSKKTRELTLLAILTALSLALGFIHIPSPTGFLTLIDTGIFFTAFYLGSKSGAVVGGLSAFLLDFLLAYPQYMFFSLFAHGLQGYFAGWTGVRRYLGLLLASLAMVGIYILAALVLGFGWGAALAGIWGNLSQNVLGLVVGAALYRAFSKAFPRK
>NZ_CP029490.1|WP_002961181.1|176028_176592_+|TIGR01440-family-protein
MDLQNLEKETRAIVRDILERSAIKQGQIFVLGLSSSEVAGGRIGQNSSLEIGQVIVKTILEETKLKGVHLAVQGCEHLNRALVVEEAVAESKGLEIVNVLPGLHAGGSGQLAALDYMENPVEVEAVVAHAGLDIGDTFIGMHVKRVQVPLIPLQRELGGAHVTALASRPKLIGGARAKYKADPIRKN
>NZ_CP029490.1|WP_002961183.1|176740_177589_-|mechanosensitive-ion-channel-family-protein
MSIFIKYWESLHFEDLAVNLLAKAIELALLVFAFIIGKQIANWAFDKFFSHSPRLLGQTEGRRKTLIKLFHNVMNYFLYFLLIYWILAILGLPVSSLLAGAGIAGLAIGLGAQGFLSDLVNGFFILIERQFDVGDSVTVDQVSGIVSSVGIRTTEIRDFDGTLHFIPNREILLVSNKSRGDMRAQIDIPIYASTNLDRVTQIIKEVNEIEVPNSPEIVGVPNVLGPRTASNGQFIFRVDIFVQNGQQAEIYSKFYRLYQEALLKDDISLPTPNTHIQPSQKS
>NZ_CP029490.1|WP_002961185.1|177831_179115_+|trigger-factor
MSVSFENTATNRGVLTFTISQEQIQPALDTAFNKVKKNLNVPGFRKGHMPRAVFNQKFGEEALYEDALNAILPTAYEAAVAESGLDVVAQPKIDVDSMEKGQDWSIKAEVVTKPEVKLGDYKNLEVSVEESKEVSDQDVNDKIERERKNLAELTIKDAAAENGDTVVIDFVGTVDGVEFDGGKGDNFSLELGSGQFIPGFEDQLVGAKAGDDVEVKVTFPADYQAEDLAGKDAVFATKVHEVKSKEVPELDDELAKDIDEEVETLDELKAKYRKELEAAKEIAYDDAVEGAAIEKAVENAEIVELPEEMVHDEVHRAMNEFLSNMQRQGISPEMYYQLTGTTEEDLHKQYEADADKRVRTNLVIEAIAAAEGFDATDEEIEKEITDLAAEYNMPADQVRSLLSADMLKHDITMKKAIEAITSSAKVK
>NZ_CP029490.1|WP_021673426.1|179308_179947_+|HAD-IA-family-hydrolase
MGLLVDTEYLDFQLQSGYLRSIASPSVTLGVKDFSSLVGRSGQDLLMQVRNLTQTEKTFAEITAGLKKIEAKKYHPDNYLPLFRQDIVPLLQYAKEQRLLLAVASSTALNYLLDILDNCGIRNYFDLIVSGEDFESSKPHPEIYLSVLKALHVAPEEAIAIEDSSAGIAAAKAAGMDVIAYEEKRFLIDQTQANLICKNMRAIFCHIKSLRK
>NZ_CP029490.1|WP_002961192.1|180037_180619_+|DNA-directed-RNA-polymerase-subunit-delta
MELKVFAGQEKSELSMIEVARAILESRGRDHEMYFSDLVNEIQNYLEKSDADIRQALPFFYSDLNTDGSFIPLGENRWGLRTWYAIDEIDEEVITLEENGENAPKRKRKRVNAFMDGDEDAIDYNDDDPEDEDNFTPTDVEYDDENPDDEKSEVESYDSEINEIIPDEEVSDDEDDVDLNESDDEDDDEAEND
>NZ_CP029490.1|WP_028798558.1|180911_182516_+|CTP-synthase
MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKEKIKRAATTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPATQGVKNKLAQFCDVAPEAVIESLDVDHIYQVPLNMQAQGMDQIVCDHLKLDVPKADMTEWSAMVDRVLNLKKSTRIALVGKYVELPDAYLSVVEALKHSGYVNDSAIDLKWVNANDVTAENVADLLGDVDGIIVPGGFGHRGTEGKIQTIRYARENDVPMLGICLGMQLTCVEFARHVLNMQGANSSELDPDTSYPVIDLMRDQVDVEDMGGTLRLGLYPCKLKPGSKAAAAYNNQEVVQRRHRHRYEFNTKYREVFEAAGFVFSGVSPDNRLMEVVELPDKKFFVAAQYHPELQSRPNRAEELYTAFVTAAVENAK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029490_1	1.1\|171984\|25\|NZ_CP029490\|CRISPRCasFinder	171984-172008	25	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	23844-23868	3	0.88

1. spacer 1.1|171984|25|NZ_CP029490|CRISPRCasFinder matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 3, identity: 0.88

gagcttgaaaactgggaagcgaggc	CRISPR spacer
gagcttgataactgggaagcgatac	Protospacer
******** ************* .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

966125 : 1032167

Lactococcus_phage(12.5%)

bacteriocin,transposase,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021673783.1\|966125_966344_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_002961294.1\|966993_967422_+	hypothetical protein	NA	NA	NA	NA
WP_028798426.1\|967491_967635_+	hypothetical protein	NA	NA	NA	NA
WP_028798427.1\|967660_968065_+	hypothetical protein	NA	NA	NA	NA
WP_002961298.1\|968114_969149_+	thiol reductase thioredoxin	NA	NA	NA	NA
WP_019773605.1\|969430_969856_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	3.4e-16	35.2
WP_019786472.1\|970261_970615_+	hypothetical protein	NA	NA	NA	NA
WP_002960740.1\|970711_971152_+	hypothetical protein	NA	NA	NA	NA
WP_002960737.1\|971307_971565_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_002960736.1\|971600_971897_+	hypothetical protein	NA	NA	NA	NA
WP_002960733.1\|972455_972920_+	hypothetical protein	NA	NA	NA	NA
WP_019768633.1\|973340_974492_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_028798429.1\|974497_975202_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-32	38.9
WP_002960728.1\|975214_976456_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_002960726.1\|976934_978155_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_002960725.1\|978138_978984_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002960723.1\|979048_979861_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002960720.1\|980206_980554_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_080566235.1\|980652_980964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002960712.1\|981129_981402_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_002960710.1\|981413_981653_+	KH domain-containing protein	NA	NA	NA	NA
WP_002960709.1\|982241_982886_+	hypothetical protein	NA	NA	NA	NA
WP_002960707.1\|982882_983416_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_002960705.1\|983447_984425_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA
WP_019773382.1\|984620_985556_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3
WP_028798511.1\|985946_986642_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_002963351.1\|986638_987283_+	hypothetical protein	NA	NA	NA	NA
WP_002963350.1\|987279_987777_+	hypothetical protein	NA	NA	NA	NA
WP_028798510.1\|987854_991976_-	glycosyl hydrolase family 32	NA	NA	NA	NA
WP_002961139.1\|992166_993972_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_002961140.1\|994236_995589_+	glutathione-disulfide reductase	NA	NA	NA	NA
WP_002961141.1\|995689_996940_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_002961144.1\|996939_997464_-	hypothetical protein	NA	NA	NA	NA
WP_002961146.1\|997628_998774_+	cysteine desulfurase	NA	NA	NA	NA
WP_028798509.1\|998831_1000046_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_002961149.1\|1000163_1000706_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002961151.1\|1000979_1002158_+	CapA family protein	A0A2H4JG01	uncultured_Caudovirales_phage	6.1e-31	29.8
WP_002961153.1\|1002512_1002827_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_002961156.1\|1002836_1003169_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_002961158.1\|1003192_1003486_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_002961335.1\|1004343_1009116_+	glucosyltransferase-I	NA	NA	NA	NA
WP_002961337.1\|1009258_1010548_-	glucosyltransferase-I	NA	NA	NA	NA
WP_028798508.1\|1010770_1011763_-	hypothetical protein	NA	NA	NA	NA
WP_002961340.1\|1011981_1013982_-	glucan-binding protein A	NA	NA	NA	NA
WP_028798507.1\|1014234_1014930_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_002961015.1\|1015256_1016162_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002961016.1\|1016209_1016674_+	signal peptidase II	NA	NA	NA	NA
WP_002961018.1\|1016657_1017554_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.0e-10	28.6
WP_002961021.1\|1017859_1018387_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_002961022.1\|1018422_1019685_+	uracil permease	Q9KX94	Enterobacteria_phage	6.7e-60	35.4
WP_002961023.1\|1019691_1020618_+	aspartate carbamoyltransferase catalytic subunit	A7RB08	Paramecium_bursaria_Chlorella_virus	1.8e-25	29.6
WP_002963342.1\|1020794_1021886_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	8.9e-61	36.4
WP_028798506.1\|1022309_1025489_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_002962834.1\|1026557_1026851_+	hypothetical protein	NA	NA	NA	NA
WP_002962836.1\|1027310_1027751_+	hypothetical protein	NA	NA	NA	NA
WP_002962838.1\|1027902_1028709_+	HAD family hydrolase	NA	NA	NA	NA
WP_002962841.1\|1028727_1029111_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA
WP_002962845.1\|1030213_1030735_+	hypothetical protein	NA	NA	NA	NA
WP_109821370.1\|1031051_1032167_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1265116 : 1272512

Streptococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021673864.1\|1265116_1265794_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.3e-89	69.3
WP_002959124.1\|1265801_1266962_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	2.6e-151	68.8
WP_002959125.1\|1267079_1269233_+	LTA synthase family protein	W6LM83	Streptococcus_phage	9.4e-264	68.5
WP_002959127.1\|1269497_1270115_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002959130.1\|1270283_1270598_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_002959132.1\|1270714_1271035_-	phosphoribosyl-AMP cyclohydrolase	A0A2H4UVM0	Bodo_saltans_virus	2.6e-08	30.8
WP_002959135.1\|1271031_1271790_-	imidazole glycerol phosphate synthase subunit HisF	A0A2H4UVM0	Bodo_saltans_virus	2.8e-05	24.7
WP_002959136.1\|1271792_1272512_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	A0A2H4UVM0	Bodo_saltans_virus	2.8e-10	24.8

DBSCAN-SWA_3

1873964 : 1924632

Staphylococcus_phage(36.36%)

bacteriocin,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002960303.1\|1873964_1874900_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.2e-10	38.1
WP_002960305.1\|1875201_1877586_-	primosomal protein N'	NA	NA	NA	NA
WP_002961559.1\|1878371_1878689_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002961561.1\|1878711_1879326_-	guanylate kinase	NA	NA	NA	NA
WP_002961563.1\|1879536_1880481_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002961565.1\|1880510_1881200_+	DUF1129 family protein	NA	NA	NA	NA
WP_002961569.1\|1881629_1881869_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_002961571.1\|1881926_1882409_-	single-stranded DNA-binding protein	A0A191KBQ2	Streptococcus_virus	7.4e-60	73.9
WP_002961573.1\|1882420_1882711_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_002961575.1\|1883165_1883837_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_080651904.1\|1884639_1884813_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019771033.1\|1884832_1885018_-	hypothetical protein	NA	NA	NA	NA
WP_019769835.1\|1885100_1885274_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_019769836.1\|1885295_1885481_-	hypothetical protein	NA	NA	NA	NA
WP_002963416.1\|1885774_1885966_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002963417.1\|1886267_1886492_-\|bacteriocin	garvicin Q family class II bacteriocin	NA	NA	NA	NA
WP_002961554.1\|1887862_1888786_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_109821385.1\|1888800_1891107_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.8e-42	27.7
WP_002963027.1\|1892887_1894009_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002963029.1\|1894280_1894709_+	YjdF family protein	NA	NA	NA	NA
WP_004205609.1\|1895180_1896224_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_002998870.1\|1896423_1896738_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.0e-18	47.3
WP_004205606.1\|1897042_1897246_-	copper chaperone CopZ	NA	NA	NA	NA
WP_004205604.1\|1897286_1898183_-	cation transporter	NA	NA	NA	NA
WP_019781432.1\|1898209_1900447_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.1e-96	34.0
WP_002998634.1\|1900447_1900894_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_004205595.1\|1901041_1901740_-	hypothetical protein	NA	NA	NA	NA
WP_004205594.1\|1901723_1902407_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-21	31.8
WP_004205591.1\|1903182_1903536_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_028798536.1\|1904152_1906870_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.8e-18	24.9
WP_019769944.1\|1906888_1907191_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_002962538.1\|1907183_1907480_-	YlxR family protein	NA	NA	NA	NA
WP_019770726.1\|1907494_1908811_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_080651900.1\|1908992_1909469_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_028798535.1\|1909939_1911541_-	hypothetical protein	NA	NA	NA	NA
WP_002960061.1\|1912325_1912961_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002960058.1\|1912961_1913753_-	phosphotransferase family protein	NA	NA	NA	NA
WP_002960056.1\|1914098_1915145_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_002960055.1\|1915147_1915873_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-27	30.7
WP_002960053.1\|1916150_1916570_+	HIT family protein	NA	NA	NA	NA
WP_002960051.1\|1916566_1916857_+	hypothetical protein	NA	NA	NA	NA
WP_002960048.1\|1917043_1918279_-	LCP family protein	NA	NA	NA	NA
WP_002960047.1\|1918287_1918800_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002960046.1\|1918792_1919233_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002960044.1\|1919406_1920825_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.9e-43	31.9
WP_019773382.1\|1921916_1922852_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3
WP_019769970.1\|1923331_1923601_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_019773382.1\|1923696_1924632_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.1e-87	54.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage