CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	0 crisprs	NA	0	3
NZ_CP028381	Escherichia coli strain RM10466 chromosome, complete genome	4 crisprs	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	4	11
NZ_CP028383	Escherichia coli strain RM10466 plasmid pRM10466-2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71615 : 81057

Cronobacter_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117306.1\|71615_73574_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	2.1e-20	29.4
WP_000006027.1\|73633_73867_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_001276132.1\|73924_74458_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	2.3e-46	71.8
WP_000274419.1\|75222_75657_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104873.1\|75670_75892_-	hypothetical protein	NA	NA	NA	NA
WP_000086114.1\|75892_76576_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	37.4
WP_077629773.1\|76961_77864_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000618108.1\|78282_78531_+	DinI-like family protein	Q2A098	Sodalis_phage	4.1e-14	46.7
WP_000109074.1\|78527_78965_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.7e-26	48.4
WP_001370040.1\|78964_79957_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.3e-100	59.2
WP_001369986.1\|80001_80235_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	2.0e-18	56.6
WP_000587689.1\|80430_81057_+	ParA family plasmid-partitioning AAA ATPase	E5FFJ3	Burkholderia_phage	2.0e-17	31.1

DBSCAN-SWA_2

91073 : 137255

Macacine_betaherpesvirus(25.0%)

protease,transposase,integrase

attL 86570:86592|attR 144414:144436

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
86570:86592	attL	NA	NA	NA	NA
WP_001370065.1\|91073_92666_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-173	61.6
WP_001278809.1\|92870_93287_-	recombinase	NA	NA	NA	NA
WP_000688508.1\|93279_94260_-	Plasmid segregation protein parM	A0A0A7NPX4	Enterobacteria_phage	2.2e-79	51.4
WP_000030199.1\|94674_94983_-	hypothetical protein	NA	NA	NA	NA
WP_001144036.1\|95069_95714_-	ParA family protein	NA	NA	NA	NA
WP_000016966.1\|95893_96700_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.2e-54	95.6
WP_001159871.1\|96700_97006_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813639.1\|97007_97226_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000343100.1\|97821_98082_+	hypothetical protein	NA	NA	NA	NA
WP_000194569.1\|98078_98669_+	hypothetical protein	NA	NA	NA	NA
WP_000142426.1\|98686_99034_-	hypothetical protein	NA	NA	NA	NA
WP_000850413.1\|99933_100665_-	complement resistance protein TraT	NA	NA	NA	NA
WP_001369978.1\|101835_102813_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	9.4e-102	64.5
WP_032279745.1\|103490_103721_-	hypothetical protein	NA	NA	NA	NA
WP_000377257.1\|103850_104345_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001213534.1\|104465_105905_-	enterohemolysin T1SS ABC transporter subunit EhxD	NA	NA	NA	NA
WP_072094473.1\|105908_108029_-	enterohemolysin T1SS ABC transporter permease/ATPase EhxB	W8CYL7	Bacillus_phage	9.3e-46	30.4
WP_000217748.1\|108078_111075_-	enterohemolysin EhxA	NA	NA	NA	NA
WP_001365635.1\|111076_111592_-	enterohemolysin-activating lysine-acyltransferase EhxC	NA	NA	NA	NA
WP_000899428.1\|112019_112823_-	OmpA family protein	NA	NA	NA	NA
WP_024177480.1\|112847_117155_-	hemagglutinin	NA	NA	NA	NA
WP_000439678.1\|117375_117660_-	major pilus subunit operon regulatory protein PapB	NA	NA	NA	NA
WP_000554412.1\|122656_124213_+	L-lactate permease	NA	NA	NA	NA
WP_001102092.1\|124263_124983_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000054160.1\|124993_126409_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_000431492.1\|126413_127112_+	lactate utilization protein C	NA	NA	NA	NA
WP_001369996.1\|127152_127389_-	hypothetical protein	NA	NA	NA	NA
WP_077629759.1\|127456_127921_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-46	60.8
WP_000203485.1\|128036_128348_-	hypothetical protein	NA	NA	NA	NA
WP_000264906.1\|128375_128567_-	hypothetical protein	NA	NA	NA	NA
WP_000997727.1\|128576_128942_-	hypothetical protein	NA	NA	NA	NA
WP_062896385.1\|129075_129285_+	hypothetical protein	NA	NA	NA	NA
WP_047091594.1\|129447_133350_-\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	1.7e-239	40.5
WP_000598953.1\|133846_134233_-	thermonuclease	A0A0R6PHV6	Moraxella_phage	1.1e-10	33.9
WP_044527425.1\|134391_135069_+	hypothetical protein	NA	NA	NA	NA
WP_000220092.1\|135558_135879_-	hypothetical protein	NA	NA	NA	NA
WP_000169527.1\|136799_137099_-\|transposase	transposase	NA	NA	NA	NA
WP_122993544.1\|137126_137255_-\|transposase	transposase	NA	NA	NA	NA
144414:144436	attR	NA	NA	NA	NA

DBSCAN-SWA_3

140623 : 148608

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223214.1\|140623_142711_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	6.8e-09	32.2
WP_001212725.1\|142971_143394_-	Exc2 family lipoprotein	NA	NA	NA	NA
WP_001373081.1\|144444_144870_-	subtilase AB5 cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	2.1e-26	45.2
WP_000912970.1\|144886_145930_-	subtilase AB5 cytotoxin subunit A	A0A1B0T6A2	Bacillus_phage	3.5e-06	28.3
WP_000080208.1\|146218_147811_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-174	61.8
WP_000624657.1\|147841_148192_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.9e-39	65.5
WP_000422688.1\|148188_148608_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	6.5e-44	88.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028381

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028381_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028381_1

566116-566212

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028381_1

>merge|NZ_CP028381|1|566116-566212|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP028381|1|1|566116-566212|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028381.1\|WP_001295318.1\|567340_567850_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP028381.1\|WP_001143552.1\|570781_571303_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP028381.1\|WP_000988366.1\|573733_574426_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP028381.1\|WP_000703894.1\|560064_561114_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP028381.1\|WP_000212252.1\|567967_568690_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP028381.1\|WP_000815522.1\|566276_567344_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP028381.1\|WP_000540996.1\|558011_558797_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP028381.1\|WP_000580875.1\|561429_563097_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP028381.1\|WP_000855386.1\|565188_566082_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP028381.1\|WP_001297445.1\|564376_565192_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP028381.1\|WP_001297442.1\|555415_556717_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP028381.1\|WP_000495365.1\|563106_564366_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP028381.1\|WP_001297443.1\|558807_560043_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP028381.1\|WP_001369891.1\|572971_573514_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP028381.1\|WP_000006887.1\|553997_555359_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP028381.1\|WP_000912345.1\|569360_570746_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP028381.1\|WP_000401122.1\|552483_553938_+\|putative-allantoin-permease	unknown	unknown	gnl\|CDD\|183106
NZ_CP028381.1\|WP_000255997.1\|568692_569187_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP028381.1\|WP_000729154.1\|571624_572491_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP028381.1\|WP_000190288.1\|571410_571623_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166

Protein	Function_ID	Function_description	E-value
NZ_CP028381.1\|WP_001295318.1\|567340_567850_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP028381.1\|WP_001143552.1\|570781_571303_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
NZ_CP028381.1\|WP_000988366.1\|573733_574426_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
NZ_CP028381.1\|WP_000703894.1\|560064_561114_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP028381.1\|WP_000212252.1\|567967_568690_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP028381.1\|WP_000815522.1\|566276_567344_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179
NZ_CP028381.1\|WP_000540996.1\|558011_558797_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	4.3298e-152
NZ_CP028381.1\|WP_000580875.1\|561429_563097_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP028381.1\|WP_000855386.1\|565188_566082_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP028381.1\|WP_001297445.1\|564376_565192_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.68465e-37
NZ_CP028381.1\|WP_001297442.1\|555415_556717_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP028381.1\|WP_000495365.1\|563106_564366_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
NZ_CP028381.1\|WP_001297443.1\|558807_560043_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP028381.1\|WP_001369891.1\|572971_573514_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	2.45834e-91
NZ_CP028381.1\|WP_000006887.1\|553997_555359_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP028381.1\|WP_000912345.1\|569360_570746_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP028381.1\|WP_000401122.1\|552483_553938_+\|putative-allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
NZ_CP028381.1\|WP_000255997.1\|568692_569187_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP028381.1\|WP_000729154.1\|571624_572491_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP028381.1\|WP_000190288.1\|571410_571623_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42

>NZ_CP028381.1|WP_000855386.1|565188_566082_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEDTLAGEAGTCISL
>NZ_CP028381.1|WP_001297445.1|564376_565192_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP028381.1|WP_000495365.1|563106_564366_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP028381.1|WP_000580875.1|561429_563097_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLSDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP028381.1|WP_000703894.1|560064_561114_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP028381.1|WP_001297443.1|558807_560043_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPHPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP028381.1|WP_000540996.1|558011_558797_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP028381.1|WP_001297442.1|555415_556717_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTVLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP028381.1|WP_000006887.1|553997_555359_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP028381.1|WP_000401122.1|552483_553938_+|putative-allantoin-permease
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLLFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIPFMEPLSRVSWFVGVIVAFAAYALLKKRTTVEKTGEQKTIG
>NZ_CP028381.1|WP_000815522.1|566276_567344_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP028381.1|WP_001295318.1|567340_567850_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP028381.1|WP_000212252.1|567967_568690_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP028381.1|WP_000255997.1|568692_569187_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP028381.1|WP_000912345.1|569360_570746_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP028381.1|WP_001143552.1|570781_571303_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP028381.1|WP_000190288.1|571410_571623_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP028381.1|WP_000729154.1|571624_572491_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP028381.1|WP_001369891.1|572971_573514_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIKLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP028381.1|WP_000988366.1|573733_574426_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NZ_CP028381_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028381_2

1195851-1195942

Orphan

Consensus_repeat	Method
GCATCAGAAGCAGGTAAAAAAGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028381_2

>merge|NZ_CP028381|2|1195851-1195942|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGG

>NZ_CP028381|2|2|1195851-1195942|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGG	ACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGC
GCATCTGAAGCAGGTAAAAAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028381.1\|WP_001307708.1\|1199715_1200408_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP028381.1\|WP_001028087.1\|1197404_1197899_-\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP028381.1\|WP_001143120.1\|1194582_1194810_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP028381.1\|WP_001297176.1\|1200407_1201499_-\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP028381.1\|WP_001151437.1\|1194830_1195427_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP028381.1\|WP_001062102.1\|1187035_1189582_+\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP028381.1\|WP_001126780.1\|1199317_1199704_-\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP028381.1\|WP_001044263.1\|1193303_1194545_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP028381.1\|WP_000191700.1\|1201786_1202425_+\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP028381.1\|WP_001001196.1\|1197909_1198500_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP028381.1\|WP_001398499.1\|1202464_1206427_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP028381.1\|WP_000024561.1\|1190270_1190576_-\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP028381.1\|WP_001307099.1\|1198509_1199310_-\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP028381.1\|WP_000209854.1\|1189578_1190178_+\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP028381.1\|WP_001230242.1\|1185863_1187036_+\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP028381.1\|WP_000420629.1\|1190575_1191496_-\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP028381.1\|WP_000979516.1\|1206481_1206691_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028381.1\|WP_001120112.1\|1185041_1185734_-\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP028381.1\|WP_001240629.1\|1196055_1197384_-\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP028381.1\|WP_000535359.1\|1191755_1193015_+\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074

Protein	Function_ID	Function_description	E-value
NZ_CP028381.1\|WP_001307708.1\|1199715_1200408_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.84226e-169
NZ_CP028381.1\|WP_001028087.1\|1197404_1197899_-\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.53375e-103
NZ_CP028381.1\|WP_001143120.1\|1194582_1194810_-\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP028381.1\|WP_001297176.1\|1200407_1201499_-\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP028381.1\|WP_001151437.1\|1194830_1195427_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP028381.1\|WP_001062102.1\|1187035_1189582_+\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP028381.1\|WP_001126780.1\|1199317_1199704_-\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP028381.1\|WP_001044263.1\|1193303_1194545_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP028381.1\|WP_000191700.1\|1201786_1202425_+\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12845e-153
NZ_CP028381.1\|WP_001001196.1\|1197909_1198500_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.45614e-128
NZ_CP028381.1\|WP_001398499.1\|1202464_1206427_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP028381.1\|WP_000024561.1\|1190270_1190576_-\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	2.74017e-64
NZ_CP028381.1\|WP_001307099.1\|1198509_1199310_-\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP028381.1\|WP_000209854.1\|1189578_1190178_+\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.10573e-83
NZ_CP028381.1\|WP_001230242.1\|1185863_1187036_+\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP028381.1\|WP_000420629.1\|1190575_1191496_-\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP028381.1\|WP_001120112.1\|1185041_1185734_-\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP028381.1\|WP_001240629.1\|1196055_1197384_-\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP028381.1\|WP_000535359.1\|1191755_1193015_+\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0

>NZ_CP028381.1|WP_001151437.1|1194830_1195427_-|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP028381.1|WP_001143120.1|1194582_1194810_-|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP028381.1|WP_001044263.1|1193303_1194545_+|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLIASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP028381.1|WP_000535359.1|1191755_1193015_+|YccE-family-protein
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVQNVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP028381.1|WP_000420629.1|1190575_1191496_-|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP028381.1|WP_000024561.1|1190270_1190576_-|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVTHP
>NZ_CP028381.1|WP_000209854.1|1189578_1190178_+|molecular-chaperone-TorD
MTTLTAQQIACIYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNALENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCHQHDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP028381.1|WP_001062102.1|1187035_1189582_+|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP028381.1|WP_001230242.1|1185863_1187036_+|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP028381.1|WP_001120112.1|1185041_1185734_-|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP028381.1|WP_001240629.1|1196055_1197384_-|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPYERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP028381.1|WP_001028087.1|1197404_1197899_-|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARGQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP028381.1|WP_001001196.1|1197909_1198500_-|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTVEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP028381.1|WP_001307099.1|1198509_1199310_-|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP028381.1|WP_001126780.1|1199317_1199704_-|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP028381.1|WP_001307708.1|1199715_1200408_-|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP028381.1|WP_001297176.1|1200407_1201499_-|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP028381.1|WP_000191700.1|1201786_1202425_+|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP028381.1|WP_001398499.1|1202464_1206427_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESAQAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP028381.1|WP_000979516.1|1206481_1206691_+|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH

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Crispr_ID: NZ_CP028381_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028381_3

3184170-3184626

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP028381_3

>merge|NZ_CP028381|3|3184170-3184626|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACCAACGAAATTGAGAGCAAAGGTCGCTACGCAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCATGAAGCACGCTGGAATTTATATTTGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGCAGCCCGATGCGGTTAGAGATATAGGCCTCCGGTTTATCCCCGCTGGCGCGGGGAACACATCTCCAGCGCCTTTTCGACGCAACGGTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGACCGATTTTATTGATCGCCCGATAGACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGATTCCGCTTTCTCTACCTTCTCTTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTTGTGCGCCCTGGTGGGCGAAAACGGTGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028381|3|1|3184170-3184626|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028381|3|3|3184170-3184626|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028381|3|1|3184170-3184626|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028381.1\|WP_001173673.1\|3179855_3180461_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP028381.1\|WP_000956458.1\|3193477_3193630_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP028381.1\|WP_000490440.1\|3183049_3184087_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP028381.1\|WP_001084076.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP028381.1\|WP_001233938.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028381.1\|WP_000063176.1\|3184722_3185016_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP028381.1\|WP_001090346.1\|3180460_3181888_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP028381.1\|WP_000372108.1\|3181889_3182798_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP028381.1\|WP_000246136.1\|3178248_3178959_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP028381.1\|WP_000085053.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP028381.1\|WP_000568943.1\|3176723_3177773_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP028381.1\|WP_001246104.1\|3179482_3179806_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP028381.1\|WP_000144848.1\|3185012_3185936_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028381.1\|WP_001295182.1\|3175981_3176743_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP028381.1\|WP_000206429.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP028381.1\|WP_000029315.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP028381.1\|WP_000517476.1\|3178977_3179289_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP028381.1\|WP_001219242.1\|3177769_3178249_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP028381.1\|WP_000281423.1\|3185932_3186583_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP028381.1\|WP_000039843.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP028381.1\|WP_001173673.1\|3179855_3180461_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP028381.1\|WP_000956458.1\|3193477_3193630_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP028381.1\|WP_000490440.1\|3183049_3184087_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP028381.1\|WP_001084076.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP028381.1\|WP_001233938.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP028381.1\|WP_000063176.1\|3184722_3185016_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP028381.1\|WP_001090346.1\|3180460_3181888_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP028381.1\|WP_000372108.1\|3181889_3182798_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP028381.1\|WP_000246136.1\|3178248_3178959_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120
NZ_CP028381.1\|WP_000085053.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP028381.1\|WP_000568943.1\|3176723_3177773_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP028381.1\|WP_001246104.1\|3179482_3179806_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP028381.1\|WP_000144848.1\|3185012_3185936_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
NZ_CP028381.1\|WP_001295182.1\|3175981_3176743_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP028381.1\|WP_000206429.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP028381.1\|WP_000029315.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP028381.1\|WP_000517476.1\|3178977_3179289_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP028381.1\|WP_001219242.1\|3177769_3178249_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP028381.1\|WP_000281423.1\|3185932_3186583_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.48092e-91
NZ_CP028381.1\|WP_000039843.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138

>NZ_CP028381.1|WP_000490440.1|3183049_3184087_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP028381.1|WP_000372108.1|3181889_3182798_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP028381.1|WP_001090346.1|3180460_3181888_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP028381.1|WP_001173673.1|3179855_3180461_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP028381.1|WP_001246104.1|3179482_3179806_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP028381.1|WP_000517476.1|3178977_3179289_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP028381.1|WP_000246136.1|3178248_3178959_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP028381.1|WP_001219242.1|3177769_3178249_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP028381.1|WP_000568943.1|3176723_3177773_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP028381.1|WP_001295182.1|3175981_3176743_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP028381.1|WP_000063176.1|3184722_3185016_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP028381.1|WP_000144848.1|3185012_3185936_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP028381.1|WP_000281423.1|3185932_3186583_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP028381.1|WP_000085053.1|3186564_3187311_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP028381.1|WP_000206429.1|3187321_3188377_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP028381.1|WP_000029315.1|3188391_3188928_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP028381.1|WP_001084076.1|3188924_3190487_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP028381.1|WP_001233938.1|3190584_3193284_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP028381.1|WP_000956458.1|3193477_3193630_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP028381.1|WP_000039843.1|3193894_3194629_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP028381_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028381_4

3200129-3200217

TypeI-E

I-E

Consensus_repeat	Method
GGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

1 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP028381_4

>merge|NZ_CP028381|4|3200129-3200217|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACACGTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028381|4|4|3200129-3200217|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028381.1\|WP_000254745.1\|3207488_3207824_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP028381.1\|WP_000956458.1\|3193477_3193630_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP028381.1\|WP_000581937.1\|3207823_3208072_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP028381.1\|WP_001084076.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP028381.1\|WP_001379137.1\|3201400_3202003_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP028381.1\|WP_001071648.1\|3206626_3207418_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP028381.1\|WP_001199982.1\|3200556_3201228_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP028381.1\|WP_000211936.1\|3196414_3198214_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP028381.1\|WP_000085053.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP028381.1\|WP_001290706.1\|3194702_3196415_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP028381.1\|WP_000210878.1\|3204761_3206399_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP028381.1\|WP_000793004.1\|3202016_3202922_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP028381.1\|WP_000034929.1\|3202957_3203320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028381.1\|WP_000206429.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP028381.1\|WP_000029315.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP028381.1\|WP_000036723.1\|3203375_3204674_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP028381.1\|WP_000987944.1\|3198529_3198895_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP028381.1\|WP_001233938.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028381.1\|WP_000226815.1\|3208149_3210384_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP028381.1\|WP_000039843.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP028381.1\|WP_000254745.1\|3207488_3207824_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP028381.1\|WP_000956458.1\|3193477_3193630_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP028381.1\|WP_000581937.1\|3207823_3208072_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP028381.1\|WP_001084076.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP028381.1\|WP_001379137.1\|3201400_3202003_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
NZ_CP028381.1\|WP_001071648.1\|3206626_3207418_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP028381.1\|WP_001199982.1\|3200556_3201228_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
NZ_CP028381.1\|WP_000211936.1\|3196414_3198214_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP028381.1\|WP_000085053.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP028381.1\|WP_001290706.1\|3194702_3196415_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP028381.1\|WP_000210878.1\|3204761_3206399_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP028381.1\|WP_000793004.1\|3202016_3202922_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.06471e-80
NZ_CP028381.1\|WP_000226815.1\|3208149_3210384_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP028381.1\|WP_000206429.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP028381.1\|WP_000029315.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP028381.1\|WP_000036723.1\|3203375_3204674_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP028381.1\|WP_000987944.1\|3198529_3198895_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP028381.1\|WP_001233938.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP028381.1\|WP_000039843.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138

>NZ_CP028381.1|WP_000987944.1|3198529_3198895_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP028381.1|WP_000211936.1|3196414_3198214_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP028381.1|WP_001290706.1|3194702_3196415_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP028381.1|WP_000039843.1|3193894_3194629_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP028381.1|WP_000956458.1|3193477_3193630_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP028381.1|WP_001233938.1|3190584_3193284_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP028381.1|WP_001084076.1|3188924_3190487_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP028381.1|WP_000029315.1|3188391_3188928_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP028381.1|WP_000206429.1|3187321_3188377_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP028381.1|WP_000085053.1|3186564_3187311_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP028381.1|WP_001199982.1|3200556_3201228_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP028381.1|WP_001379137.1|3201400_3202003_+|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>NZ_CP028381.1|WP_000793004.1|3202016_3202922_+|YgcG-family-protein
MKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>NZ_CP028381.1|WP_000034929.1|3202957_3203320_+|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>NZ_CP028381.1|WP_000036723.1|3203375_3204674_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP028381.1|WP_000210878.1|3204761_3206399_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP028381.1|WP_001071648.1|3206626_3207418_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP028381.1|WP_000254745.1|3207488_3207824_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP028381.1|WP_000581937.1|3207823_3208072_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP028381.1|WP_000226815.1|3208149_3210384_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028381_2	2.1\|1195877\|40\|NZ_CP028381\|CRISPRCasFinder	1195877-1195916	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
NZ_CP028381_3	3.4\|3184383\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184383-3184414	32	AP014927	Ralstonia phage RSF1 DNA, complete genome	171005-171036	9	0.719
NZ_CP028381_3	3.6\|3184505\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
NZ_CP028381_3	3.6\|3184505\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
NZ_CP028381_3	3.6\|3184505\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
NZ_CP028381_3	3.6\|3184505\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
NZ_CP028381_3	3.7\|3184566\|32\|NZ_CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688

1. spacer 2.1|1195877|40|NZ_CP028381|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

2. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gagattgt-cgccctgttgggcgagaacggtgc	Protospacer
 .*.**** ******* *******.*******

3. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gaggacgt-tgccctggtcggcgaagacggtgg	Protospacer
 .** .** .******** ******.*******

4. spacer 3.4|3184383|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to AP014927 (Ralstonia phage RSF1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctccagcgccttttcgacgcaacggtgcgc	CRISPR spacer
cacgccagcgcctgttcgacgaaacgggtctg	Protospacer
  * ********* ******* *****  *

5. spacer 3.6|3184505|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaaacgcttcctctacattctctttttc	Protospacer
  ..*   *****.****** ***********

6. spacer 3.6|3184505|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

7. spacer 3.6|3184505|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

8. spacer 3.6|3184505|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
gccttcgctgctttctcggccttctctttttc	Protospacer
 *   . *.******** .*************

9. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

10. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

11. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

12. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

13. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
aaggtcaccgccctgatcggcgaaaacggtgc	Protospacer
..* *   *******.* *************

14. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

15. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

16. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

17. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

18. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

19. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

20. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

21. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

22. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

23. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

24. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

25. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

26. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

27. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

28. spacer 3.7|3184566|32|NZ_CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
ttccctgccgccctggttggcgaatacggtgg	Protospacer
   ..   ********* ****** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

198505 : 260693

Emiliania_huxleyi_virus(12.5%)

tRNA,protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295561.1\|198505_199858_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|199887_202320_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|202441_202927_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139284.1\|202930_203956_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|204060_204516_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|204519_205308_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139667.1\|205307_206456_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569430.1\|206452_207049_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_001294757.1\|207085_210568_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055741.1\|210580_211540_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_109996707.1\|211638_213780_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|213836_214226_+	VOC family protein	NA	NA	NA	NA
WP_000176578.1\|214290_215589_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|215637_215898_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|215884_216085_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|216250_216796_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|216792_217215_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239192.1\|217228_217939_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000399648.1\|218188_219169_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001260712.1\|220247_221966_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094011.1\|222077_222785_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202335.1\|222781_223186_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|223303_224119_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|224158_224812_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|224804_225836_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140163.1\|226023_226596_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997010.1\|232355_233159_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_000648606.1\|233155_234070_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|234310_235111_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211690.1\|235188_235959_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|236006_237365_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052720.1\|237436_238192_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001297210.1\|238225_238948_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|238944_239412_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|239476_240208_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001086142.1\|240747_241533_+	aminopeptidase	NA	NA	NA	NA
WP_001236649.1\|241669_242149_-	hypothetical protein	NA	NA	NA	NA
WP_000908057.1\|242158_243073_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|243116_243599_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087745.1\|243622_244975_-	membrane protein	NA	NA	NA	NA
WP_122985538.1\|244985_248420_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240530.1\|248528_249941_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088859.1\|249945_250689_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_000614334.1\|250685_253445_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.7e-82	28.4
WP_000343293.1\|253453_254215_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246416.1\|254219_255551_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|255553_256078_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113703.1\|256074_257355_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|257379_258462_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393844.1\|258425_260276_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611742.1\|260279_260693_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

569360 : 633858

Enterobacteria_phage(46.3%)

capsid,transposase,tRNA,integrase,protease,head,portal,terminase,lysis,tail

attL 579522:579568|attR 625332:625378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|569360_570746_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|570781_571303_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|571410_571623_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|571624_572491_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001369891.1\|572971_573514_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988366.1\|573733_574426_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_109996711.1\|574456_577066_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691049.1\|577078_578086_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250425.1\|578096_578612_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|578614_579247_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
579522:579568	attL	NA	NA	NA	NA
WP_001369915.1\|579581_580745_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
WP_000433949.1\|580600_580972_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.8e-46	81.0
WP_000206813.1\|580971_581277_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001242707.1\|581276_581639_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000008170.1\|581629_582166_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	9.0e-99	97.8
WP_000081287.1\|582293_583118_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|583183_583546_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000559922.1\|584016_584532_+	hypothetical protein	NA	NA	NA	NA
WP_000450738.1\|584759_585386_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	2.5e-47	48.8
WP_000205494.1\|585483_585684_+	cell division protein	NA	NA	NA	NA
WP_000515870.1\|585721_586273_+	hypothetical protein	U5P4K1	Shigella_phage	1.7e-100	98.9
WP_001250269.1\|586448_586628_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_001369913.1\|586617_587559_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
WP_001573323.1\|587555_588050_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
WP_000210176.1\|588049_588376_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_000767127.1\|588372_588762_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061408.1\|588781_589579_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_001358249.1\|589586_590576_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-190	97.0
WP_001204780.1\|590593_590977_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_000737283.1\|591166_592264_-	porin	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
WP_000670959.1\|592852_593068_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	3.4e-33	98.6
WP_001135281.1\|593067_593565_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
WP_001228697.1\|593781_593964_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.4e-16	78.3
WP_000738500.1\|594054_594348_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
WP_000079503.1\|594638_595049_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
WP_001031427.1\|595334_595541_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001421937.1\|595705_595900_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_109996712.1\|596288_596834_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001027283.1\|596808_598734_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000198149.1\|598730_598937_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001369921.1\|598933_600535_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
WP_000123273.1\|600515_601835_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
WP_001369910.1\|601844_602177_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
WP_000063218.1\|602232_603258_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
WP_000158868.1\|603299_603695_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000753019.1\|603706_604060_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000975051.1\|604071_604650_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
WP_000683105.1\|604646_605042_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001345558.1\|605049_605790_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.0e-128	96.7
WP_000479154.1\|605805_606228_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	9.7e-72	99.3
WP_000459458.1\|606209_606644_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_000840258.1\|606636_609198_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847379.1\|609194_609524_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152639.1\|609523_610222_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000194780.1\|610227_610971_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_071532093.1\|610907_611540_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.4e-95	99.0
WP_000515725.1\|611600_615014_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
WP_001233071.1\|615084_615684_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	4.4e-110	98.5
WP_000279163.1\|615748_618709_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
WP_000885616.1\|618708_619284_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000086514.1\|619381_619972_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000836768.1\|620288_620522_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|620590_620704_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000239874.1\|621069_621738_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937502.1\|621794_622100_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226378.1\|622283_623768_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|623954_624908_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177464.1\|625421_626183_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
625332:625378	attR	NA	NA	NA	NA
WP_001224569.1\|626365_627256_-	DUF4434 family protein	NA	NA	NA	NA
WP_000662376.1\|627256_630229_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_109996713.1\|630215_632453_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000394594.1\|632721_633858_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

903905 : 1006422

106

Salmonella_phage(66.04%)

capsid,transposase,integrase,protease,head,portal,terminase,plate,lysis,tail

attL 935535:935556|attR 968803:968824

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000399648.1\|903905_904886_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000168779.1\|905146_906412_-	DUF1479 domain-containing protein	NA	NA	NA	NA
WP_000114244.1\|906563_907379_-	sugar-phosphatase YbiV	NA	NA	NA	NA
WP_000209359.1\|907524_909957_-	glycyl radical protein	A0A076YHZ7	Citrobacter_phage	6.1e-09	43.5
WP_001295295.1\|909962_910862_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA
WP_000424889.1\|910992_911655_+	fructose-6-phosphate aldolase	C7BV14	Synechococcus_phage	1.6e-25	32.7
WP_000829261.1\|911833_912583_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_000397381.1\|912582_913818_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_000513775.1\|914021_914987_+	beta-aspartyl-peptidase	NA	NA	NA	NA
WP_000090136.1\|916864_918403_+	glutathione ABC transporter substrate-binding protein GsiB	NA	NA	NA	NA
WP_000936043.1\|918420_919341_+	glutathione ABC transporter permease GsiC	NA	NA	NA	NA
WP_001236044.1\|919343_920255_+	glutathione ABC transporter permease GsiD	NA	NA	NA	NA
WP_001349442.1\|920432_922781_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000086910.1\|922788_924117_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_000049367.1\|924163_925489_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_000497137.1\|925701_926085_+	biofilm formation regulator BssR	NA	NA	NA	NA
WP_000555035.1\|926195_927311_+	aldose sugar dehydrogenase YliI	NA	NA	NA	NA
WP_001295292.1\|927307_927934_-	glutathione S-transferase GstB	NA	NA	NA	NA
WP_000195961.1\|928179_929382_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.2e-100	48.0
WP_000450133.1\|929428_930187_-	DNA-binding transcriptional repressor DeoR	NA	NA	NA	NA
WP_000892317.1\|930244_930841_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_001180076.1\|931125_932358_+	multidrug efflux MFS transporter MdfA	NA	NA	NA	NA
WP_000480892.1\|932398_932683_-	hypothetical protein	NA	NA	NA	NA
WP_001297001.1\|932768_933584_-	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase	NA	NA	NA	NA
WP_000217848.1\|933583_934792_-	MFS transporter	NA	NA	NA	NA
WP_001297003.1\|934875_935412_+	DNA-binding transcriptional regulator RcdA	NA	NA	NA	NA
935535:935556	attL	NA	NA	NA	NA
WP_000290920.1\|936174_937194_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	3.4e-102	55.6
WP_023568567.1\|937273_937870_-	DUF4276 family protein	NA	NA	NA	NA
WP_001420841.1\|937873_939007_-	AAA family ATPase	NA	NA	NA	NA
WP_000347902.1\|939008_939575_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.6e-32	39.2
WP_000191881.1\|939701_939923_+	hypothetical protein	NA	NA	NA	NA
WP_000460901.1\|939955_940465_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.7e-86	98.2
WP_000956182.1\|940472_940673_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_000963472.1\|940636_940978_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.3e-55	98.2
WP_001244230.1\|941045_941279_+	DUF2732 family protein	E5G6L6	Salmonella_phage	1.1e-32	97.4
WP_000752619.1\|941278_941506_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_000104146.1\|941502_942357_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.9e-147	90.1
WP_001420002.1\|942362_943184_+	hypothetical protein	A0A0M4RCP6	Salmonella_phage	1.1e-122	75.7
WP_023568566.1\|943183_945556_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.1
WP_001154434.1\|945708_945897_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217568.1\|945907_946141_+	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_000834899.1\|946300_946726_-	hypothetical protein	NA	NA	NA	NA
WP_109996719.1\|947372_947642_+	hypothetical protein	D2IZW1	Enterococcus_phage	7.6e-14	42.4
WP_089641074.1\|947696_948743_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	9.8e-174	89.2
WP_001098431.1\|948742_950509_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_000216224.1\|950651_951485_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.4e-122	90.3
WP_000742504.1\|951501_952560_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.2e-180	92.8
WP_088294201.1\|952563_953214_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.5e-111	95.8
WP_000673529.1\|953309_953774_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.6
WP_109996720.1\|953773_953977_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	5.7e-30	89.6
WP_000171569.1\|953980_954196_+	hypothetical protein	E5G6N0	Salmonella_phage	3.1e-26	78.9
WP_001581542.1\|954176_954692_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-89	92.4
WP_109996721.1\|954688_955117_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.8e-58	88.7
WP_097424227.1\|955212_955644_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.9e-70	91.6
WP_061348709.1\|955636_956083_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.6e-56	81.5
WP_044711059.1\|956024_956831_-	hypothetical protein	NA	NA	NA	NA
WP_032331041.1\|956934_957513_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
WP_000177574.1\|957509_957869_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.2e-52	87.4
WP_061348708.1\|957855_958764_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	9.2e-144	90.7
WP_001086845.1\|958756_959362_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.5
WP_109996722.1\|959358_961089_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.0e-79	62.8
WP_109996723.1\|961088_961523_+\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	5.5e-22	40.6
WP_109996724.1\|961655_962828_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-202	89.2
WP_109996725.1\|962837_963353_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.4e-88	94.2
WP_109996726.1\|963407_963710_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.6e-39	88.9
WP_000763311.1\|963724_963844_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_109996727.1\|963836_966914_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	5.7e-312	61.3
WP_000980413.1\|966910_967396_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_001011799.1\|967392_968493_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.2e-176	88.0
WP_000972391.1\|968583_968802_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001024867.1\|969037_970723_-	aspartate:alanine antiporter	NA	NA	NA	NA
968803:968824	attR	NA	NA	NA	NA
WP_000681108.1\|970992_971370_+	hypothetical protein	NA	NA	NA	NA
WP_001195240.1\|971399_971657_-	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	8.6e-23	61.9
WP_001201560.1\|971816_972104_+	DUF1418 family protein	NA	NA	NA	NA
WP_000189159.1\|972087_972810_+	nitroreductase NfsA	NA	NA	NA	NA
WP_000684321.1\|972870_973773_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000203025.1\|973860_974337_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_000126072.1\|974688_975801_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000996025.1\|975895_977029_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	5.0e-30	34.4
WP_000105430.1\|977038_977992_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001061657.1\|977988_978834_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000389260.1\|978893_979382_+	YbjO family protein	NA	NA	NA	NA
WP_001149733.1\|979422_980550_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_001295905.1\|980724_981456_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000464491.1\|981747_982416_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001001691.1\|982415_983132_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000756569.1\|983138_983870_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000027205.1\|983887_984616_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_001270740.1\|984833_985349_-	lipoprotein	NA	NA	NA	NA
WP_001160737.1\|985474_985798_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001255144.1\|985794_986625_+	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001338420.1\|986621_987635_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001136554.1\|987733_989164_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000566372.1\|989174_990176_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000815350.1\|990212_991931_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
WP_000178677.1\|992063_993032_-	NADH oxidoreductase	NA	NA	NA	NA
WP_000458817.1\|993043_994696_-	hydroxylamine reductase	NA	NA	NA	NA
WP_000491142.1\|994839_995739_-	L-lysine exporter LysO	NA	NA	NA	NA
WP_001297311.1\|996233_996929_-	aquaporin Z	NA	NA	NA	NA
WP_000599806.1\|997354_999013_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001355621.1\|999009_999966_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000746460.1\|1000116_1001232_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_000188180.1\|1001228_1003175_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
WP_000410785.1\|1003247_1003472_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000520781.1\|1003794_1004115_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|1004145_1006422_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5

DBSCAN-SWA_4

1095734 : 1164915

Escherichia_phage(39.29%)

capsid,holin,integrase,protease,head,portal,terminase,tail

attL 1110830:1110889|attR 1160181:1160242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156526.1\|1095734_1097495_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877158.1\|1097680_1098133_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750419.1\|1098207_1099260_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1099616_1100126_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1100344_1100974_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875044.1\|1100936_1103099_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1103108_1103555_-	YccF domain-containing protein	NA	NA	NA	NA
WP_001315388.1\|1103677_1105732_+	DNA helicase IV	A7KV33	Bacillus_phage	7.7e-21	27.9
WP_000424181.1\|1105763_1106222_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1106317_1106980_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1107152_1107566_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1107610_1107928_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116288.1\|1107985_1109176_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048250.1\|1109270_1109549_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1109545_1109875_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375136.1\|1109965_1110625_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
1110830:1110889	attL	NA	NA	NA	NA
WP_001367167.1\|1111032_1112052_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
WP_000273163.1\|1112020_1112272_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_039264392.1\|1112338_1114741_-	exonuclease	V5UQJ3	Shigella_phage	3.7e-176	58.1
WP_000092782.1\|1114833_1115022_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|1115018_1115207_-	cell division inhibitor	NA	NA	NA	NA
WP_077632757.1\|1116062_1116278_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.3e-10	84.2
WP_000380319.1\|1116433_1116586_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_000948456.1\|1116897_1117374_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_000712070.1\|1117498_1117822_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	1.4e-09	43.5
WP_000693925.1\|1117805_1118231_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_039264394.1\|1118299_1119331_+	phage replisome organiser	A0A0U2RT81	Escherichia_phage	6.9e-87	70.4
WP_072130322.1\|1119242_1119785_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_106879089.1\|1119818_1120535_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.1e-72	63.0
WP_074398695.1\|1120567_1120849_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	7.2e-31	74.2
WP_064506980.1\|1120845_1121151_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.4e-50	94.1
WP_044527398.1\|1121137_1121740_+	ead/Ea22-like family protein	A0A2R2Z315	Escherichia_phage	5.3e-39	49.5
WP_044527399.1\|1121837_1122263_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	1.2e-16	85.1
WP_000206823.1\|1122776_1123121_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	3.3e-54	93.0
WP_000967410.1\|1123354_1123567_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	2.8e-27	97.1
WP_044527401.1\|1123735_1124008_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.1e-11	50.8
WP_064506981.1\|1124009_1125059_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.6e-115	58.2
WP_001204806.1\|1125076_1125457_+	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-67	100.0
WP_000917735.1\|1125672_1125870_+	hypothetical protein	S5MQK8	Escherichia_phage	1.8e-28	98.5
WP_000483497.1\|1126020_1127079_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.3e-207	99.1
WP_032360617.1\|1127461_1128421_+	Shiga toxin Stx2 subunit A	Q776Q3	Enterobacteria_phage	2.1e-175	99.7
WP_000738072.1\|1128432_1128702_+	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_047090759.1\|1128999_1129323_-	anti-adapter protein IraM	Q20GJ2	Phage_258-320	6.5e-60	98.1
WP_064506982.1\|1129566_1131504_+	SASA family carbohydrate esterase	S5MDQ7	Escherichia_phage	0.0e+00	94.8
WP_000143458.1\|1131654_1131834_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290214.1\|1131874_1132120_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	3.2e-19	98.8
WP_000284506.1\|1132197_1132413_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_064506983.1\|1132416_1133208_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_001092874.1\|1133719_1134253_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.4e-99	95.5
WP_051694738.1\|1134409_1134592_+	hypothetical protein	NA	NA	NA	NA
WP_135301858.1\|1134960_1135146_+	hypothetical protein	A0A0P0ZCT3	Stx2-converting_phage	1.1e-16	95.1
WP_000828070.1\|1135546_1135873_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1136004_1136205_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829192.1\|1136246_1136612_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000958387.1\|1136901_1137465_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_106879091.1\|1137461_1139123_+\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.5
WP_096633151.1\|1139186_1141124_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.5
WP_001063099.1\|1141168_1141390_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_109996729.1\|1141335_1143921_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	96.9
WP_000125990.1\|1143917_1144244_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001029274.1\|1144253_1144604_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
WP_000573358.1\|1144600_1145047_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	2.0e-75	99.3
WP_000133383.1\|1145043_1145388_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_001275448.1\|1145454_1146171_+\|tail	major tail protein	A0A0P0ZDV1	Stx2-converting_phage	2.3e-126	99.2
WP_000710952.1\|1146185_1146560_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_122993267.1\|1146655_1146865_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_000212883.1\|1146912_1150155_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.7
WP_000343411.1\|1150147_1150489_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
WP_001499019.1\|1150488_1151187_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_039264406.1\|1151197_1151941_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	3.8e-148	97.6
WP_077632782.1\|1151886_1152519_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.0e-101	91.4
WP_109996730.1\|1152758_1156445_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.0
WP_000078853.1\|1156643_1156784_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_039264410.1\|1156928_1158641_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.2e-67	51.0
WP_000438829.1\|1158650_1158863_+	hypothetical protein	NA	NA	NA	NA
WP_064506743.1\|1158874_1159549_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	9.6e-114	90.1
WP_022581964.1\|1159712_1160042_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001058323.1\|1160696_1161815_+	hydrogenase 1 small subunit	NA	NA	NA	NA
1160181:1160242	attR	NA	NA	NA	NA
WP_000107388.1\|1161811_1163605_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186424.1\|1163623_1164331_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|1164327_1164915_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_5

1312056 : 1428837

154

Escherichia_phage(28.32%)

capsid,holin,integrase,tRNA,protease,head,portal,terminase,plate,tail

attL 1330621:1330642|attR 1392386:1392407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000074972.1\|1312056_1313175_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.5e-82	43.6
WP_000003742.1\|1313143_1313413_-	excisionase	NA	NA	NA	NA
WP_087613937.1\|1313474_1315919_-	exonuclease	V5UQJ3	Shigella_phage	1.4e-170	56.7
WP_000092784.1\|1316011_1316200_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|1316196_1316385_-	cell division inhibitor	NA	NA	NA	NA
WP_000559919.1\|1316913_1317429_+	hypothetical protein	NA	NA	NA	NA
WP_000380318.1\|1317542_1317695_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_032211256.1\|1317972_1318260_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001367155.1\|1318260_1318452_-	hypothetical protein	NA	NA	NA	NA
WP_087614071.1\|1318420_1318840_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.2e-08	56.2
WP_000448216.1\|1318900_1319272_-	hypothetical protein	NA	NA	NA	NA
WP_021577226.1\|1319374_1319656_+	hypothetical protein	NA	NA	NA	NA
WP_000693827.1\|1319659_1320085_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_052909572.1\|1320153_1321185_+	phage replisome organizer	A0A0U2RT81	Escherichia_phage	8.4e-85	69.1
WP_072130322.1\|1321096_1321639_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_047082289.1\|1321672_1322389_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.7e-73	62.1
WP_000017341.1\|1322385_1322703_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.4e-35	75.0
WP_109996733.1\|1322699_1322981_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.3e-45	92.5
WP_022581296.1\|1323152_1323335_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	3.8e-25	93.3
WP_052904230.1\|1323500_1324016_+	hypothetical protein	A0A076GCN9	Escherichia_phage	2.5e-37	77.6
WP_001398985.1\|1324249_1324462_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
WP_001341173.1\|1324628_1324901_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.9e-12	50.8
WP_032284906.1\|1324902_1325952_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	7.7e-110	54.6
WP_000904108.1\|1325964_1326339_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.4e-35	62.7
WP_000762903.1\|1326335_1327157_+	hypothetical protein	K7P7B9	Enterobacteria_phage	2.9e-80	59.7
WP_000917741.1\|1327383_1327581_+	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_062876351.1\|1327731_1328790_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	9.5e-201	96.3
WP_087614088.1\|1329172_1330132_+	Shiga toxin Stx2 subunit A	Q5TJL6	Enterobacteria_phage	6.2e-175	99.4
WP_000738072.1\|1330143_1330413_+	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
1330621:1330642	attL	NA	NA	NA	NA
WP_109996734.1\|1330914_1332852_+	SASA family carbohydrate esterase	S5MDQ7	Escherichia_phage	0.0e+00	93.5
WP_000143458.1\|1332989_1333169_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|1333209_1333455_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|1333532_1333748_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_039264424.1\|1333751_1334543_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	4.0e-34	86.7
WP_109996735.1\|1335054_1335588_+	lysozyme	Q6H9V6	Enterobacteria_phage	6.9e-99	94.9
WP_062896309.1\|1335744_1335927_+	hypothetical protein	NA	NA	NA	NA
WP_072057482.1\|1336295_1336502_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_047083440.1\|1336566_1336791_+	hypothetical protein	NA	NA	NA	NA
WP_047091053.1\|1337236_1337785_+\|terminase	terminase small subunit	K7PJS9	Enterobacteria_phage	4.6e-58	60.0
WP_109996798.1\|1337777_1339685_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	4.3e-260	66.8
WP_000259002.1\|1339668_1339875_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_109996736.1\|1339871_1341464_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	5.8e-186	61.3
WP_052909563.1\|1341453_1342959_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.5e-98	53.4
WP_000256803.1\|1342995_1343343_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	4.4e-22	57.0
WP_044803575.1\|1343400_1344429_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
WP_001373367.1\|1344480_1344864_+	hypothetical protein	NA	NA	NA	NA
WP_001204531.1\|1344856_1345210_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.8e-40	69.2
WP_001571311.1\|1345225_1345801_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-50	58.3
WP_000683074.1\|1345797_1346193_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.2e-57	80.9
WP_000235126.1\|1346200_1346950_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	1.6e-130	94.4
WP_001299690.1\|1346965_1347397_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_071532372.1\|1347423_1347837_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	2.3e-41	82.8
WP_087614060.1\|1347817_1350397_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	81.4
WP_000847280.1\|1350393_1350723_+\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_001499019.1\|1350722_1351421_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_109996737.1\|1351431_1352175_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	8.3e-143	94.7
WP_162543788.1\|1352120_1352717_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.4e-79	72.4
WP_000514886.1\|1353627_1357314_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.3
WP_000078853.1\|1357512_1357653_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_109996739.1\|1357797_1359501_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	3.3e-70	51.9
WP_000438830.1\|1359510_1359723_+	hypothetical protein	NA	NA	NA	NA
WP_001373129.1\|1359734_1360409_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.3e-114	90.1
WP_022581964.1\|1360572_1360902_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_000799399.1\|1361067_1361931_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531601.1\|1361914_1363051_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359432.1\|1363300_1364530_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1364675_1365797_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000085265.1\|1366045_1367275_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.5e-133	55.9
WP_000953271.1\|1367649_1367838_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_000182306.1\|1368086_1368290_-	hypothetical protein	NA	NA	NA	NA
WP_000103621.1\|1368347_1368527_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.5e-10	58.6
WP_000190551.1\|1369032_1369212_-	hypothetical protein	NA	NA	NA	NA
WP_024201884.1\|1369404_1369602_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_050867507.1\|1369594_1369807_+	hypothetical protein	NA	NA	NA	NA
WP_033882705.1\|1369796_1370036_+	hypothetical protein	NA	NA	NA	NA
WP_064565559.1\|1370028_1370262_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|1370494_1370794_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_050867509.1\|1370790_1372200_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	3.4e-113	58.9
WP_024174166.1\|1372402_1372654_+	hypothetical protein	NA	NA	NA	NA
WP_050867510.1\|1372650_1373073_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_050867511.1\|1373490_1373697_+	hypothetical protein	NA	NA	NA	NA
WP_050867512.1\|1373696_1374752_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.1e-70	43.4
WP_050867513.1\|1374763_1375099_+\|head	head decoration protein	NA	NA	NA	NA
WP_050867514.1\|1375111_1375525_+	hypothetical protein	NA	NA	NA	NA
WP_106904103.1\|1375771_1376356_+\|terminase	terminase small subunit	K7PJS9	Enterobacteria_phage	3.2e-57	57.2
WP_021292930.1\|1376611_1376893_+	hypothetical protein	NA	NA	NA	NA
WP_000735412.1\|1377742_1379203_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1379202_1379874_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1380041_1381412_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1381415_1382057_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1382092_1383199_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476089.1\|1383252_1383714_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248691.1\|1383723_1384377_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|1384548_1385799_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000885267.1\|1386205_1388533_-	ATPase AAA	NA	NA	NA	NA
WP_000741318.1\|1388851_1389979_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	2.7e-121	60.5
WP_001527050.1\|1389959_1390205_-	phage excisionase	NA	NA	NA	NA
WP_000008212.1\|1390259_1390796_-	HD family hydrolase	U5P0T3	Shigella_phage	3.9e-94	94.3
WP_000081287.1\|1390924_1391749_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|1391814_1392177_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001514782.1\|1392777_1393053_-	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
1392386:1392407	attR	NA	NA	NA	NA
WP_001369946.1\|1393061_1393265_-	ClpX C4-type zinc finger	A0A1C9IHZ4	Salmonella_phage	8.9e-15	68.3
WP_001369890.1\|1393541_1394234_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	2.3e-126	99.6
WP_001191674.1\|1394331_1394592_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_000515847.1\|1394584_1395136_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|1395311_1395491_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104988.1\|1395480_1396422_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	8.6e-153	99.4
WP_074400771.1\|1396418_1396913_+	PerC family transcriptional regulator	S5MW49	Escherichia_phage	6.2e-86	96.9
WP_001369966.1\|1396912_1397566_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.5e-127	99.1
WP_000210187.1\|1397562_1397889_+	LexA family transcriptional regulator	A5LH73	Enterobacteria_phage	1.6e-53	100.0
WP_000767113.1\|1397885_1398275_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061425.1\|1398294_1399137_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	6.3e-139	91.5
WP_033812102.1\|1399144_1400134_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.6e-194	99.4
WP_001205449.1\|1400151_1400499_+	antitermination protein Q	A0A0P0ZCW0	Stx2-converting_phage	8.0e-56	85.0
WP_001198055.1\|1400512_1401604_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	5.3e-05	35.4
WP_162543785.1\|1401627_1402200_-	hypothetical protein	A0A1L2CVC4	Pectobacterium_phage	2.3e-07	40.4
WP_000143147.1\|1402196_1402913_-	hypothetical protein	NA	NA	NA	NA
WP_001120498.1\|1403288_1403615_+\|holin	phage holin, lambda family	S5FM86	Shigella_phage	3.4e-56	98.1
WP_001148537.1\|1403618_1404095_+	glycoside hydrolase family protein	S5FV07	Shigella_phage	8.3e-88	98.7
WP_001369893.1\|1404078_1404471_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	6.5e-54	89.2
WP_001140095.1\|1404923_1405274_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	6.8e-63	95.7
WP_000929173.1\|1405400_1405895_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.3e-88	100.0
WP_072011717.1\|1406128_1407625_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	7.4e-300	99.8
WP_000605606.1\|1407636_1407819_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_000466253.1\|1407818_1409060_+\|portal	phage portal protein	U5P411	Shigella_phage	2.6e-242	99.5
WP_001398562.1\|1409037_1409688_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	7.3e-119	99.5
WP_000257511.1\|1409702_1410908_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.2e-223	99.5
WP_000601360.1\|1410957_1411158_+	hypothetical protein	S5FNU1	Shigella_phage	3.8e-26	97.0
WP_000927719.1\|1411160_1411484_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000702388.1\|1411480_1411891_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000213502.1\|1411865_1412372_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000779292.1\|1412368_1412929_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
WP_000497751.1\|1412937_1413108_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000155716.1\|1413091_1414588_+\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	1.2e-273	99.2
WP_000090998.1\|1414587_1414944_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000811154.1\|1414943_1415213_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	7.8e-43	98.9
WP_000807196.1\|1415354_1417190_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	1.5e-307	99.3
WP_000219910.1\|1417250_1418579_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.5e-246	98.9
WP_000999507.1\|1418575_1419655_+	hypothetical protein	U5P0H6	Shigella_phage	4.5e-206	99.4
WP_001259081.1\|1419654_1420203_+\|plate	phage baseplate assembly protein	Q8SBG6	Shigella_phage	1.5e-96	99.5
WP_000424732.1\|1420202_1420628_+	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_000785311.1\|1420614_1421673_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	8.1e-200	98.6
WP_000383545.1\|1421663_1422248_+	YmfQ family protein	O22003	Shigella_phage	2.4e-113	99.5
WP_000554683.1\|1422251_1422899_+	hypothetical protein	U5P0I1	Shigella_phage	8.4e-67	64.4
WP_000416463.1\|1422901_1423333_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	4.3e-43	74.6
WP_001057699.1\|1423304_1423907_-\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	8.9e-95	88.4
WP_044721967.1\|1423906_1424437_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	4.4e-98	96.6
WP_000905000.1\|1424466_1425021_+	site-specific DNA recombinase	A0A1S6L009	Salmonella_phage	4.4e-88	88.9
WP_000557907.1\|1425127_1425961_+	5-methylcytosine-specific endonuclease McrA	NA	NA	NA	NA
WP_000943926.1\|1426194_1426359_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-24	100.0
WP_001307134.1\|1426461_1426785_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
WP_032141808.1\|1427317_1427428_-	hypothetical protein	NA	NA	NA	NA
WP_000373101.1\|1427480_1427885_-	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_000332302.1\|1428105_1428837_-	DNA-binding transcriptional repressor BluR	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5

DBSCAN-SWA_6

1527274 : 1596106

Escherichia_phage(27.45%)

capsid,holin,integrase,protease,head,terminase,lysis,tail

attL 1527107:1527134|attR 1582301:1582328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1527107:1527134	attL	NA	NA	NA	NA
WP_000113693.1\|1527274_1528405_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	4.0e-104	51.4
WP_000113183.1\|1528382_1528631_-	excisionase	NA	NA	NA	NA
WP_000034484.1\|1528695_1531167_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.3e-54	56.0
WP_000092839.1\|1531262_1531451_-	DUF1482 family protein	NA	NA	NA	NA
WP_109996740.1\|1531447_1531636_-	cell division inhibitor	NA	NA	NA	NA
WP_001365839.1\|1532410_1532779_-	hypothetical protein	NA	NA	NA	NA
WP_000380317.1\|1532790_1532943_-	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001003380.1\|1533132_1533540_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000476991.1\|1533617_1533845_+	transcriptional regulator	NA	NA	NA	NA
WP_000705131.1\|1533828_1534350_+	hypothetical protein	NA	NA	NA	NA
WP_000054520.1\|1534330_1535296_+	hypothetical protein	U5P0A0	Shigella_phage	5.0e-55	61.2
WP_000790460.1\|1535302_1536043_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.7e-114	83.1
WP_000450858.1\|1536072_1536834_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.4e-74	64.0
WP_000215513.1\|1536893_1537088_+	hypothetical protein	NA	NA	NA	NA
WP_000211993.1\|1537429_1537981_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000882661.1\|1538195_1538408_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.6e-28	94.3
WP_000042395.1\|1538510_1538828_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001452497.1\|1539416_1539644_+	hypothetical protein	NA	NA	NA	NA
WP_024199763.1\|1539697_1539967_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.2e-11	52.5
WP_050877448.1\|1539968_1541018_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.3
WP_000904164.1\|1541030_1541393_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
WP_001064918.1\|1541385_1542051_+	antiterminator	I6PDF8	Cronobacter_phage	1.6e-60	52.0
WP_000342737.1\|1542304_1543018_+	hypothetical protein	NA	NA	NA	NA
WP_000917733.1\|1543191_1543389_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_064579144.1\|1543539_1544598_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.4e-206	98.6
WP_000271631.1\|1545078_1545507_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000382067.1\|1546203_1546929_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_109996741.1\|1548786_1550751_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	6.5e-296	78.8
WP_000142780.1\|1550885_1551065_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_001290230.1\|1551105_1551351_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|1551428_1551644_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_024200907.1\|1551647_1552316_+	hypothetical protein	Q08JA0	Stx2-converting_phage	6.0e-60	76.7
WP_001063216.1\|1552295_1552616_-	hypothetical protein	NA	NA	NA	NA
WP_000992036.1\|1552741_1553275_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	7.4e-101	97.2
WP_072024677.1\|1553431_1553614_+	hypothetical protein	NA	NA	NA	NA
WP_024173692.1\|1553762_1554230_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	7.9e-67	87.1
WP_000877795.1\|1554410_1554956_+	hypothetical protein	A0A0P0ZFJ1	Escherichia_phage	7.4e-64	68.6
WP_000828070.1\|1555292_1555619_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1555750_1555951_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829191.1\|1555992_1556358_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.0e-61	95.9
WP_000958387.1\|1556646_1557210_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001398587.1\|1557206_1558868_+\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	99.6
WP_000172990.1\|1558931_1560869_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1560913_1561135_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000125990.1\|1563499_1563826_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001029274.1\|1563835_1564186_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
WP_000573391.1\|1564182_1564629_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133383.1\|1564625_1564970_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_039264404.1\|1565036_1565753_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	8.9e-126	98.7
WP_000710934.1\|1565767_1566142_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	7.8e-65	99.2
WP_122993267.1\|1566237_1566447_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_109996742.1\|1566494_1569737_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.7
WP_000343412.1\|1569729_1570071_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.6e-51	82.1
WP_000738904.1\|1570269_1571433_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-140	66.9
WP_001499019.1\|1571643_1572342_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_109996743.1\|1572352_1573096_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.1e-142	94.7
WP_122993618.1\|1573041_1573674_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.9e-100	91.0
WP_109996744.1\|1574584_1578280_+	DUF1983 domain-containing protein	Q6H9T2	Enterobacteria_phage	0.0e+00	84.2
WP_001270059.1\|1578348_1578972_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	9.0e-66	59.9
WP_109996745.1\|1579121_1580126_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.3e-53	97.3
WP_109996746.1\|1580194_1580866_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.3e-106	83.9
WP_109996747.1\|1582478_1582985_-	ferritin-like domain-containing protein	NA	NA	NA	NA
1582301:1582328	attR	NA	NA	NA	NA
WP_001056491.1\|1583030_1583531_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1583616_1583796_-	general stress protein	NA	NA	NA	NA
WP_000443056.1\|1584176_1584983_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209516.1\|1584982_1586176_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_024177467.1\|1586187_1587546_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.0e-37	41.2
WP_000763511.1\|1587549_1589145_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194592.1\|1589144_1590707_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1590798_1590843_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1590980_1591862_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1591858_1592479_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1592579_1593452_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|1593491_1594082_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559280.1\|1594078_1594837_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	25.0
WP_000422045.1\|1595056_1596106_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_7

1877653 : 1940162

Escherichia_phage(53.45%)

holin,integrase,protease,portal,terminase,tail

attL 1892570:1892587|attR 1912178:1912195

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047084001.1\|1877653_1878325_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.2e-109	86.1
WP_064550087.1\|1878393_1879662_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.9e-54	98.2
WP_000078853.1\|1879805_1879946_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_109996754.1\|1880144_1883831_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.1
WP_136760451.1\|1884070_1884703_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.3e-101	91.4
WP_106901611.1\|1884648_1885392_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.6e-141	93.9
WP_001365876.1\|1885402_1886101_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.4e-131	98.3
WP_000847279.1\|1886100_1886430_-\|tail	phage tail protein	S5MW28	Escherichia_phage	5.6e-59	100.0
WP_044527407.1\|1886426_1889072_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	93.2
WP_000532075.1\|1889115_1889424_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
WP_000479054.1\|1889450_1889873_-\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	5.1e-73	100.0
WP_000174599.1\|1889889_1890639_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	5.3e-137	98.8
WP_000682704.1\|1890646_1891045_-	hypothetical protein	S5MW30	Escherichia_phage	2.7e-71	100.0
WP_000974964.1\|1891054_1891681_-	hypothetical protein	S5MBY4	Escherichia_phage	7.8e-102	100.0
WP_001281350.1\|1891683_1891965_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_001097057.1\|1891957_1892284_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	4.0e-49	99.1
WP_162543789.1\|1892370_1894350_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	98.8
1892570:1892587	attL	NA	NA	NA	NA
WP_000974560.1\|1894339_1895842_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	5.4e-290	99.8
WP_000102415.1\|1895841_1896054_-	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_000133402.1\|1897546_1897828_-	hypothetical protein	NA	NA	NA	NA
WP_032313484.1\|1898085_1899975_-\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	1.6e-182	51.4
WP_000761833.1\|1900946_1902701_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.9e-90	39.6
WP_000770163.1\|1902697_1902997_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_044527408.1\|1903002_1903236_-	hypothetical protein	NA	NA	NA	NA
WP_001204072.1\|1903237_1903459_-	hypothetical protein	NA	NA	NA	NA
WP_032307277.1\|1903431_1903674_-	hypothetical protein	NA	NA	NA	NA
WP_000076671.1\|1903663_1903894_-	hypothetical protein	A0A1W6JPD9	Morganella_phage	4.5e-07	49.1
WP_000226789.1\|1903890_1904085_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000108048.1\|1904283_1904589_+	hypothetical protein	NA	NA	NA	NA
WP_071531869.1\|1904646_1904874_+	hypothetical protein	NA	NA	NA	NA
WP_001038669.1\|1905266_1905848_-	hypothetical protein	A0A1W6JPH8	Morganella_phage	3.4e-51	61.3
WP_000229066.1\|1905907_1906132_-	hypothetical protein	NA	NA	NA	NA
WP_000114064.1\|1906124_1907363_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	6.6e-60	35.1
WP_044527410.1\|1907524_1908532_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	5.3e-201	99.7
WP_000348556.1\|1908528_1909005_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	1.3e-80	96.8
WP_012816791.1\|1909519_1909705_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001092868.1\|1910223_1910757_-	lysozyme	G9L6J6	Escherichia_phage	1.1e-99	95.5
WP_001457151.1\|1911268_1911754_-	hypothetical protein	NA	NA	NA	NA
WP_000284510.1\|1911757_1911973_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_064550301.1\|1912050_1912296_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	7.4e-16	98.8
1912178:1912195	attR	NA	NA	NA	NA
WP_000143458.1\|1912336_1912516_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_064550303.1\|1912666_1914613_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	97.8
WP_000738080.1\|1915125_1915395_-	Shiga toxin Stx2c subunit B	Q5TJL5	Enterobacteria_phage	2.1e-43	100.0
WP_001365055.1\|1915406_1916366_-	Shiga toxin Stx2d subunit A	Q6DWN9	Enterobacteria_phage	1.6e-175	100.0
WP_000762906.1\|1916851_1917673_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.2e-86	57.2
WP_001258479.1\|1917669_1918044_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.7e-38	66.4
WP_024200897.1\|1918056_1919106_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.5e-108	54.9
WP_047090793.1\|1919107_1919380_-	hypothetical protein	I6PCV7	Cronobacter_phage	7.2e-12	48.4
WP_001260977.1\|1919515_1919773_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	1.5e-30	86.7
WP_000220600.1\|1919778_1920078_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	3.9e-51	99.0
WP_000651124.1\|1920282_1920678_-	hypothetical protein	A0A193GYM6	Enterobacter_phage	2.5e-37	61.2
WP_000829416.1\|1920667_1920886_-	hypothetical protein	H6WZG0	Escherichia_phage	1.2e-06	70.3
WP_000991478.1\|1921015_1921327_-	hypothetical protein	A0A222YY67	Escherichia_phage	6.5e-49	79.6
WP_001373171.1\|1921323_1921479_-	hypothetical protein	NA	NA	NA	NA
WP_029374881.1\|1921507_1921807_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-49	94.9
WP_024200898.1\|1921803_1922085_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	5.7e-28	66.7
WP_001151140.1\|1922089_1922524_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.0e-35	60.9
WP_000450642.1\|1922539_1923265_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.0e-77	64.4
WP_074435815.1\|1923298_1923841_-	replication protein	A0A0U2JGJ0	Escherichia_phage	9.5e-80	90.8
WP_001262404.1\|1923752_1924784_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	5.8e-86	70.0
WP_000693921.1\|1924852_1925278_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001261756.1\|1925274_1925502_-	cell division protein	NA	NA	NA	NA
WP_000444611.1\|1925600_1926245_+	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	6.1e-09	25.9
WP_122993314.1\|1926717_1926975_+	hypothetical protein	I6PDF6	Cronobacter_phage	4.1e-09	81.6
WP_000449172.1\|1927796_1927985_+	cell division inhibitor	NA	NA	NA	NA
WP_000199480.1\|1927981_1928170_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048380.1\|1928265_1930737_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	59.3
WP_001368608.1\|1930822_1931059_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000877018.1\|1931094_1932369_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	2.8e-154	61.7
WP_072094462.1\|1932397_1932505_-	transporter	NA	NA	NA	NA
WP_000836072.1\|1932562_1933582_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	1.6e-16	25.9
WP_001295394.1\|1933593_1934808_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|1935013_1935340_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|1935474_1935816_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|1935850_1936411_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|1936413_1937124_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|1937231_1937537_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041556.1\|1937735_1940162_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0

DBSCAN-SWA_8

2446924 : 2508859

Escherichia_phage(51.06%)

capsid,holin,tRNA,integrase,head,portal,terminase,plate,lysis,tail

attL 2451982:2452009|attR 2481583:2481610

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000675150.1\|2446924_2448328_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	3.0e-32	29.0
WP_000137869.1\|2448324_2449047_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.4e-30	33.2
WP_000929408.1\|2449237_2449570_+	YegP family protein	NA	NA	NA	NA
WP_001307279.1\|2449778_2450075_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_001220181.1\|2450076_2450373_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000476011.1\|2450475_2451837_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
2451982:2452009	attL	NA	NA	NA	NA
WP_000468308.1\|2452109_2452328_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_044527455.1\|2452409_2453573_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	5.4e-205	99.5
WP_000978892.1\|2453572_2454052_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.9e-84	99.4
WP_044527454.1\|2454066_2456514_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	95.6
WP_000785970.1\|2456506_2456626_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|2456658_2456934_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|2456990_2457509_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286727.1\|2457521_2458712_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.8e-225	99.7
WP_101981607.1\|2458835_2459306_-\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	1.2e-22	42.8
WP_109996762.1\|2459272_2461003_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.2e-83	64.0
WP_001285352.1\|2460999_2461611_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	3.8e-117	99.5
WP_001121479.1\|2461603_2462512_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	7.5e-162	99.7
WP_000127164.1\|2462516_2462864_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_109996763.1\|2462860_2463496_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	4.2e-111	98.6
WP_001001780.1\|2463562_2464015_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	6.3e-77	100.0
WP_000917190.1\|2464007_2464475_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-81	97.4
WP_001300730.1\|2464437_2464611_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_033811832.1\|2464582_2465008_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7L9Y0	Escherichia_phage	8.0e-66	95.7
WP_001712252.1\|2464995_2465421_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	8.6e-60	96.5
WP_001144101.1\|2465435_2465933_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|2465932_2466214_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_000846399.1\|2466217_2466421_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988628.1\|2466420_2466930_-\|head	head completion/stabilization protein	Q858W4	Yersinia_virus	3.0e-91	100.0
WP_000203414.1\|2467029_2467767_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.2e-128	98.4
WP_044527451.1\|2467770_2468844_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.9e-201	99.4
WP_044527450.1\|2468902_2469757_-\|capsid	GPO family capsid scaffolding protein	Q94MH0	Enterobacteria_phage	1.7e-131	97.5
WP_044527449.1\|2469930_2471703_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.5
WP_044527448.1\|2471702_2472737_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	4.2e-201	99.7
WP_071987867.1\|2473089_2474244_-	DNA cytosine methyltransferase	Q83VT0	Escherichia_phage	3.2e-210	99.4
WP_071526056.1\|2474264_2474534_+	helix-turn-helix transcriptional regulator	Q83VS9	Escherichia_phage	3.6e-40	100.0
WP_000866882.1\|2474511_2475567_+	restriction endonuclease, SacI family	Q83VS8	Escherichia_phage	2.2e-197	100.0
WP_044527447.1\|2475660_2477931_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.2
WP_000027664.1\|2477920_2478196_-	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_001113258.1\|2478192_2478417_-	hypothetical protein	S4TRY6	Salmonella_phage	2.5e-34	97.3
WP_001277958.1\|2478416_2478719_-	DUF5405 family protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
WP_000557703.1\|2478718_2478943_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217670.1\|2479006_2479507_-	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000043869.1\|2479684_2479960_-	hypothetical protein	Q1JS62	Enterobacteria_phage	1.3e-48	100.0
WP_001306384.1\|2480074_2480374_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.5e-50	100.0
WP_000985256.1\|2480489_2481503_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	1.4e-193	99.1
WP_000716757.1\|2481767_2482085_-	hypothetical protein	NA	NA	NA	NA
2481583:2481610	attR	NA	NA	NA	NA
WP_000807362.1\|2482499_2483399_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178552.1\|2483480_2484260_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844200.1\|2484359_2485400_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490717.1\|2485447_2486803_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000823272.1\|2486806_2487091_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182899.1\|2487121_2487574_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853892.1\|2487583_2488846_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000289788.1\|2488874_2489729_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|2490038_2491091_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858484.1\|2491347_2492625_+	nucleoside permease	NA	NA	NA	NA
WP_000846219.1\|2492621_2493626_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.3e-13	29.4
WP_000011973.1\|2493622_2494588_+	sugar kinase	NA	NA	NA	NA
WP_000434038.1\|2494561_2495308_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001315719.1\|2495359_2496178_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	2.3e-24	38.5
WP_000822274.1\|2496242_2497043_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195590.1\|2497039_2497828_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2498050_2498323_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134576.1\|2498443_2499268_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153067.1\|2499486_2499825_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_001026151.1\|2499906_2500941_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_109996764.1\|2500954_2503435_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677395.1\|2503450_2504125_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830468.1\|2504205_2504748_-	fimbrial protein	NA	NA	NA	NA
WP_001324851.1\|2505040_2505322_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|2505584_2506694_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001295427.1\|2506825_2508859_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6

DBSCAN-SWA_9

2521424 : 2530865

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2521424_2522561_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001317947.1\|2522557_2524558_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|2524681_2525143_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|2525183_2525654_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2525700_2526420_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2526416_2528102_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|2528323_2529055_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|2529114_2529222_+	protein YohO	NA	NA	NA	NA
WP_109996766.1\|2529202_2529934_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569325.1\|2529938_2530865_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_10

2992568 : 3085279

Salmonella_phage(68.52%)

capsid,transposase,tRNA,integrase,head,portal,terminase,plate,lysis,tail

attL 3058724:3058739|attR 3072828:3072843

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298974.1\|2992568_2993306_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|2993437_2994772_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000365855.1\|2994980_2995862_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000189207.1\|2995964_2996552_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|2996607_2996991_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|2997295_2997985_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997404.1\|2998032_2999070_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2999276_2999696_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001343689.1\|2999764_3000463_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082964.1\|3000494_3003155_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3003268_3004624_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000464877.1\|3004648_3004993_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000852115.1\|3004989_3006288_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	2.2e-45	32.2
WP_001235102.1\|3012154_3014728_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040149.1\|3014857_3015589_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079112.1\|3015585_3016566_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3016700_3017438_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|3017708_3018050_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|3018153_3018201_+	hypothetical protein	NA	NA	NA	NA
WP_109996774.1\|3018299_3019460_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225221.1\|3019502_3020624_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168044.1\|3020634_3021705_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000976004.1\|3021914_3022280_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|3022429_3022948_+	YfiR family protein	NA	NA	NA	NA
WP_000969032.1\|3022937_3024164_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589828.1\|3024179_3024662_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|3024738_3025086_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264777.1\|3025127_3025895_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3025925_3026474_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3026492_3026741_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460035.1\|3026877_3028239_-	signal recognition particle protein	NA	NA	NA	NA
WP_001189257.1\|3028330_3029197_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_077221315.1\|3029217_3030504_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3030558_3031152_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|3031274_3032153_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|3032238_3033900_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|3034048_3034390_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|3034451_3034742_-	RnfH family protein	NA	NA	NA	NA
WP_000600190.1\|3034731_3035208_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3035339_3035822_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000391797.1\|3036522_3037005_+	hypothetical protein	Q19UP0	Mannheimia_phage	2.0e-17	33.7
WP_000980501.1\|3037031_3037250_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-28	77.8
WP_001011775.1\|3037318_3038419_-	phage late control D family protein	E5G6Q3	Salmonella_phage	6.9e-178	85.8
WP_000980395.1\|3038415_3038901_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
WP_069919222.1\|3038897_3041975_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.7
WP_000763311.1\|3041967_3042087_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281016.1\|3042101_3042404_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.2e-41	90.0
WP_044527351.1\|3042458_3042974_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.1e-88	94.2
WP_000046146.1\|3042983_3044156_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_000120166.1\|3044288_3044723_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	4.2e-22	40.6
WP_109996775.1\|3044722_3046453_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	4.7e-80	62.8
WP_001086820.1\|3046449_3047055_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.2e-111	92.5
WP_000268301.1\|3047047_3047956_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.1e-144	91.1
WP_001583421.1\|3047942_3048302_-	lysozyme family protein	A0A1S6KZZ4	Salmonella_phage	1.5e-52	87.4
WP_044527322.1\|3048298_3048877_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.2e-93	86.5
WP_023135313.1\|3048945_3049392_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.5e-62	84.9
WP_001595569.1\|3049384_3049816_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
WP_023135316.1\|3049911_3050340_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
WP_000727851.1\|3050336_3050714_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
WP_001513678.1\|3050715_3051228_-	lysozyme	E5G6N1	Salmonella_phage	9.0e-88	91.7
WP_000171568.1\|3051208_3051424_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|3051427_3051631_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673523.1\|3051630_3052095_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_025790323.1\|3052190_3052841_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	3.3e-111	95.4
WP_000742510.1\|3052844_3053903_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.8e-181	93.4
WP_044527321.1\|3053919_3054753_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.2e-121	90.6
WP_001098411.1\|3054895_3056662_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_039516393.1\|3056661_3057690_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.0e-172	87.7
WP_039516390.1\|3057737_3058655_-	restriction endonuclease	NA	NA	NA	NA
WP_039516388.1\|3058617_3059820_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.9e-60	36.2
3058724:3058739	attL	NA	NA	NA	NA
WP_001217575.1\|3060146_3060380_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3060390_3060579_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_044527320.1\|3060731_3063146_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
WP_044527319.1\|3063142_3064000_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.5e-159	96.5
WP_000752619.1\|3063996_3064224_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_001244223.1\|3064223_3064457_-	DUF2732 family protein	E5G6L6	Salmonella_phage	3.2e-32	97.4
WP_044527318.1\|3064524_3064866_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.1e-54	96.5
WP_000934004.1\|3064948_3065197_+	hypothetical protein	NA	NA	NA	NA
WP_001399247.1\|3065282_3065579_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.2e-22	92.3
WP_001399248.1\|3065586_3066096_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	3.4e-87	99.4
WP_000102105.1\|3066128_3066371_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
WP_000932271.1\|3066492_3067125_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.7e-59	51.9
WP_001399250.1\|3067127_3068144_+\|integrase	site-specific integrase	E5G6L0	Salmonella_phage	1.4e-188	94.7
WP_001083625.1\|3068154_3068823_+	hypothetical protein	NA	NA	NA	NA
WP_000113814.1\|3069158_3070400_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	2.6e-101	47.3
WP_001317263.1\|3070538_3071633_-	hypothetical protein	NA	NA	NA	NA
WP_000169527.1\|3072890_3073190_+\|transposase	transposase	NA	NA	NA	NA
3072828:3072843	attR	NA	NA	NA	NA
WP_000878220.1\|3073186_3074053_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-50	40.2
WP_000532680.1\|3074066_3075365_-	hypothetical protein	NA	NA	NA	NA
WP_000878218.1\|3075382_3076249_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_000169527.1\|3076245_3076545_-\|transposase	transposase	NA	NA	NA	NA
WP_000871156.1\|3076572_3076806_-	hypothetical protein	NA	NA	NA	NA
WP_106377177.1\|3077522_3081128_+	hypothetical protein	NA	NA	NA	NA
WP_000443183.1\|3081166_3081913_+	hypothetical protein	NA	NA	NA	NA
WP_000925811.1\|3081899_3082079_+	hypothetical protein	NA	NA	NA	NA
WP_000655916.1\|3082346_3083228_-	hypothetical protein	NA	NA	NA	NA
WP_001367084.1\|3083341_3083581_+	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	2.5e-08	49.2
WP_001283984.1\|3083746_3084046_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_085950812.1\|3084066_3085279_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.4e-99	56.8

DBSCAN-SWA_11

3160673 : 3167813

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3160673_3163235_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141340.1\|3163340_3163997_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001272551.1\|3164047_3164845_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.7e-69	56.0
WP_000847985.1\|3165010_3165919_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590384.1\|3165915_3167178_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
WP_001278994.1\|3167174_3167813_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection