CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP029453	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence	0 crisprs	RT	0	0	9
NZ_CP029451	Sinorhizobium fredii CCBAU 25509 chromosome, complete genome	5 crisprs	csa3,WYL,cas3,DEDDh	1	2	8
NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	0 crisprs	csa3	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 65313

Burkholderia_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014858028.1\|1242_2223_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	7.5e-59	39.1
WP_014858027.1\|2377_3592_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.2e-15	26.2
WP_080577853.1\|4286_4802_-	hypothetical protein	NA	NA	NA	NA
WP_158499791.1\|5738_6314_+	hypothetical protein	NA	NA	NA	NA
WP_034859522.1\|6313_6520_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-10	47.1
WP_015633599.1\|6667_7585_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	5.6e-32	51.7
WP_162600460.1\|8461_8704_+	hypothetical protein	NA	NA	NA	NA
WP_085939171.1\|8731_9791_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_109982302.1\|9751_10429_-	hypothetical protein	NA	NA	NA	NA
WP_014330219.1\|10649_11567_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.4e-06	25.1
WP_014330218.1\|11566_13219_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_014330217.1\|13211_13808_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-39	49.5
WP_014330934.1\|14278_15274_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014330935.1\|15282_15573_-	hypothetical protein	NA	NA	NA	NA
WP_014857805.1\|15602_16214_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330937.1\|16210_17848_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_014330938.1\|17893_18241_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_014330939.1\|18237_18630_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014857770.1\|19038_20277_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014857769.1\|20295_21900_-	hypothetical protein	NA	NA	NA	NA
WP_100209377.1\|21930_22827_-	agmatinase family protein	NA	NA	NA	NA
WP_014857767.1\|22878_24075_-	radical SAM protein	NA	NA	NA	NA
WP_014857766.1\|24212_24365_-	hypothetical protein	NA	NA	NA	NA
WP_014857764.1\|25280_28784_-	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|28905_29985_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_034859931.1\|30300_30873_+	hypothetical protein	NA	NA	NA	NA
WP_080589713.1\|31246_31801_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_167414966.1\|31728_32151_-	hypothetical protein	NA	NA	NA	NA
WP_167414967.1\|32147_33227_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015633366.1\|33754_35452_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_015633367.1\|35738_36011_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_014858087.1\|36010_36571_+	cytochrome b561	NA	NA	NA	NA
WP_014858088.1\|36585_37260_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-19	28.3
WP_015633368.1\|37508_37760_-	WGR domain-containing protein	NA	NA	NA	NA
WP_034859617.1\|38061_38535_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_153458762.1\|38673_38934_+	hypothetical protein	NA	NA	NA	NA
WP_034859618.1\|39171_39369_-	hypothetical protein	NA	NA	NA	NA
WP_034859607.1\|39604_40318_-	ParA family protein	A0A2H4JGZ2	uncultured_Caudovirales_phage	8.0e-10	27.6
WP_034859608.1\|40962_41364_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_034859612.1\|43873_44086_+	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|44201_44918_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_034859666.1\|45370_46228_+	hypothetical protein	NA	NA	NA	NA
WP_034859668.1\|49453_50779_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.4e-29	30.5
WP_014330950.1\|50969_51275_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_014857518.1\|51274_51625_-\|transposase	transposase	NA	NA	NA	NA
WP_034859669.1\|52042_52222_-	hypothetical protein	NA	NA	NA	NA
WP_109982134.1\|58001_58949_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014330959.1\|59370_59976_-	DUF1419 domain-containing protein	NA	NA	NA	NA
WP_086018031.1\|60473_61533_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014330962.1\|61534_62233_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_014330963.1\|62229_62439_-	hypothetical protein	NA	NA	NA	NA
WP_014330964.1\|62410_62587_-	hypothetical protein	NA	NA	NA	NA
WP_100209375.1\|62872_63850_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014330966.1\|63916_64117_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_014857732.1\|64509_65313_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-30	37.9

DBSCAN-SWA_2

72547 : 156070

Escherichia_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014330974.1\|72547_73441_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.3e-21	28.2
WP_100209376.1\|73639_74563_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_109023434.1\|75703_76420_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014330979.1\|76769_78515_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_014857719.1\|80012_80498_+	NTPase KAP	NA	NA	NA	NA
WP_014857718.1\|80523_80892_-	hypothetical protein	NA	NA	NA	NA
WP_085939171.1\|80949_82010_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_109023434.1\|82223_82940_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_015633430.1\|83294_84266_-	hypothetical protein	NA	NA	NA	NA
WP_015633429.1\|84353_85325_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014328393.1\|85741_86764_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_083846302.1\|88666_89650_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080577880.1\|89748_90684_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.2e-29	34.3
WP_161623564.1\|90664_92149_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_161623566.1\|92455_92776_-\|transposase	transposase	NA	NA	NA	NA
WP_015633423.1\|98299_98746_-	hypothetical protein	NA	NA	NA	NA
WP_015633422.1\|98742_99003_-	hypothetical protein	NA	NA	NA	NA
WP_015633421.1\|99893_100700_+	hypothetical protein	NA	NA	NA	NA
WP_034859947.1\|102142_102607_+	phasin	NA	NA	NA	NA
WP_167331221.1\|102916_103729_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014857788.1\|103838_106019_-	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	1.1e-41	32.8
WP_014328799.1\|110215_111613_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_153297037.1\|112649_112955_+	hypothetical protein	NA	NA	NA	NA
WP_014857797.1\|114530_115133_+	hypothetical protein	NA	NA	NA	NA
WP_034859822.1\|115163_115349_+	hypothetical protein	NA	NA	NA	NA
WP_041409929.1\|115654_117199_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_085939171.1\|117288_118348_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_167331220.1\|120243_121290_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014857794.1\|121369_122227_+	hypothetical protein	NA	NA	NA	NA
WP_015633362.1\|122320_122599_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014857792.1\|122595_123123_+	hypothetical protein	NA	NA	NA	NA
WP_037403046.1\|123246_125094_-	AAA family ATPase	NA	NA	NA	NA
WP_015633363.1\|125093_125582_-	hypothetical protein	NA	NA	NA	NA
WP_014857789.1\|125569_126601_-	hypothetical protein	NA	NA	NA	NA
WP_014327878.1\|127764_128598_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014858061.1\|130352_130802_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	5.2e-07	40.4
WP_015633495.1\|130782_131136_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.5e-20	48.4
WP_014328441.1\|132146_133244_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_037403033.1\|134612_135824_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_014858053.1\|137407_138151_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014858052.1\|138938_139085_+	hypothetical protein	NA	NA	NA	NA
WP_014328799.1\|140031_141429_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_014858072.1\|141746_142526_+	radical SAM protein	NA	NA	NA	NA
WP_015633488.1\|142933_143524_+	nodulation N-acyltransferase NodA	NA	NA	NA	NA
WP_010875356.1\|143520_144168_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_014858070.1\|144182_145424_+	chitooligosaccharide synthase NodC	M1HPL2	Paramecium_bursaria_Chlorella_virus	2.5e-11	26.7
WP_015633486.1\|145575_146607_+	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	9.4e-28	29.5
WP_015633485.1\|146610_147399_+	nodulation protein NodJ	NA	NA	NA	NA
WP_014858065.1\|149724_150450_+	2-O-methyltransferase NoeI	A0A2P0VP97	Tetraselmis_virus	3.3e-11	28.3
WP_015633479.1\|154357_154591_+	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|154990_156070_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

165393 : 218811

Stx2-converting_phage(50.0%)

transposase,integrase

attL 174752:174811|attR 208096:209034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015633473.1\|165393_166395_+\|integrase	site-specific integrase	S5M9V8	Brevibacillus_phage	4.1e-12	23.6
WP_014327878.1\|168224_169058_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014858092.1\|169839_170244_+	hypothetical protein	NA	NA	NA	NA
WP_014330863.1\|170986_171220_+	hypothetical protein	NA	NA	NA	NA
WP_014330862.1\|171200_172901_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_080577875.1\|172946_173285_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330860.1\|173296_173668_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_034859935.1\|173746_174577_+	glycoside hydrolase family 16 protein	M1HRU7	Paramecium_bursaria_Chlorella_virus	1.0e-16	26.3
174752:174811	attL	NA	NA	NA	NA
WP_014327878.1\|174832_175666_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_034859708.1\|175685_176171_-	hypothetical protein	NA	NA	NA	NA
WP_083846293.1\|176389_176764_-	hypothetical protein	NA	NA	NA	NA
WP_014858080.1\|176891_177929_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.9e-13	43.0
WP_161623565.1\|179121_179271_+	hypothetical protein	NA	NA	NA	NA
WP_014328393.1\|182452_183475_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015633467.1\|183627_183891_-	hypothetical protein	NA	NA	NA	NA
WP_014330935.1\|185837_186128_-	hypothetical protein	NA	NA	NA	NA
WP_014857805.1\|186157_186769_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_014330937.1\|186765_188403_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-103	42.9
WP_014330938.1\|188448_188796_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.4e-38	64.5
WP_014330939.1\|188792_189185_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014857776.1\|189234_189402_-	hypothetical protein	NA	NA	NA	NA
WP_014857771.1\|190501_191371_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-33	34.3
WP_037437088.1\|191380_192556_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_086018849.1\|192954_193908_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014857748.1\|193972_196084_-	hypothetical protein	NA	NA	NA	NA
WP_014857747.1\|196132_197923_-	hypothetical protein	NA	NA	NA	NA
WP_014857746.1\|197975_198374_-	hypothetical protein	NA	NA	NA	NA
WP_014857744.1\|198610_199525_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080577880.1\|200388_201324_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.2e-29	34.3
WP_161623564.1\|201304_202789_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_014327268.1\|203446_203743_-	hypothetical protein	NA	NA	NA	NA
WP_014327269.1\|203742_205365_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-102	39.3
WP_014332410.1\|205429_205777_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.0e-26	54.3
WP_041409271.1\|205773_206142_-\|transposase	transposase	NA	NA	NA	NA
WP_109982303.1\|206199_206490_+	hypothetical protein	NA	NA	NA	NA
WP_034859893.1\|206621_208073_-	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA
WP_014327878.1\|208176_209010_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014857677.1\|209149_209527_-	hypothetical protein	NA	NA	NA	NA
208096:209034	attR	NA	NA	NA	NA
WP_014857676.1\|210166_210619_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA
WP_014857675.1\|210782_211946_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	9.6e-37	36.4
WP_015633453.1\|212943_214812_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014857667.1\|217682_217907_+	hypothetical protein	NA	NA	NA	NA
WP_014327878.1\|217977_218811_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

229745 : 231306

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857651.1\|229745_230066_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	2.9e-12	37.6
WP_014857650.1\|230739_231306_-	peroxiredoxin	M1TUY3	Synechococcus_phage	9.1e-49	54.0

DBSCAN-SWA_5

236103 : 237750

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034859517.1\|236103_237750_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.7e-15	35.5

DBSCAN-SWA_6

250754 : 254547

Acanthamoeba_polyphaga_moumouvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014857633.1\|250754_252293_+	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	1.2e-23	29.3
WP_014857632.1\|252289_253633_+	insulinase family protein	G3MBJ8	Bacillus_virus	7.7e-14	22.2
WP_014857631.1\|254115_254547_+	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	4.8e-26	47.1

DBSCAN-SWA_7

260068 : 297457

Stx2-converting_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041415762.1\|260068_261148_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014857619.1\|263361_263619_-	hypothetical protein	A0A2I7REY7	Vibrio_phage	4.9e-10	49.2
WP_048655403.1\|264081_265650_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_080577876.1\|265911_266130_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	2.4e-10	51.4
WP_034859758.1\|266424_266862_+	hypothetical protein	NA	NA	NA	NA
WP_086018031.1\|268493_269554_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_048655401.1\|269886_270351_+	hypothetical protein	NA	NA	NA	NA
WP_015633375.1\|270376_270847_+	hypothetical protein	NA	NA	NA	NA
WP_085939171.1\|272896_273956_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015633378.1\|274011_274377_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015633379.1\|274373_275243_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	2.8e-25	29.3
WP_014857614.1\|277880_278891_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_109982151.1\|279177_280605_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_014857613.1\|280881_281427_-	hypothetical protein	NA	NA	NA	NA
WP_014857612.1\|281426_281735_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014857607.1\|283912_284530_-	hypothetical protein	NA	NA	NA	NA
WP_014857606.1\|284660_285107_-\|transposase	transposase	NA	NA	NA	NA
WP_015633385.1\|285252_285684_-	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	2.9e-23	46.3
WP_014857603.1\|286283_287249_-	transcriptional regulator NodD1	NA	NA	NA	NA
WP_048655408.1\|287977_289432_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.6e-51	28.0
WP_034859288.1\|289578_290994_+	phosphomannomutase	NA	NA	NA	NA
WP_014857596.1\|291308_292277_+	nodulation protein NodZ	NA	NA	NA	NA
WP_014857595.1\|292521_293577_+	GDP-mannose 4,6-dehydratase	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	4.5e-126	64.3
WP_034859283.1\|293591_294530_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	3.5e-90	50.6
WP_041409271.1\|295057_295426_+\|transposase	transposase	NA	NA	NA	NA
WP_014332410.1\|295422_295770_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.0e-26	54.3
WP_014327269.1\|295834_297457_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-102	39.3

DBSCAN-SWA_8

310648 : 311788

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014330283.1\|310648_311110_-	Hsp20 family protein	C7BV44	Synechococcus_phage	5.2e-18	37.4
WP_014330282.1\|311473_311788_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.1e-22	60.9

DBSCAN-SWA_9

316182 : 385185

Acidithiobacillus_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034859270.1\|316182_316827_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	6.3e-14	33.3
WP_014330276.1\|316923_319821_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.8e-184	37.8
WP_167414968.1\|320281_320896_-\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA
WP_014857579.1\|321648_321864_-	hypothetical protein	NA	NA	NA	NA
WP_037446536.1\|322270_323350_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_037403072.1\|325357_326908_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	9.3e-112	45.9
WP_014330860.1\|327474_327846_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080577875.1\|327857_328196_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-30	55.4
WP_014330862.1\|328241_329940_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-88	40.5
WP_014330863.1\|329921_330155_-	hypothetical protein	NA	NA	NA	NA
WP_015633401.1\|331150_331699_-	hypothetical protein	NA	NA	NA	NA
WP_014857573.1\|331715_333809_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_014857572.1\|333997_334888_-	hypothetical protein	NA	NA	NA	NA
WP_014857569.1\|336278_337091_-	effector protein NopP	NA	NA	NA	NA
WP_014857567.1\|337886_338924_-	translocation protein	NA	NA	NA	NA
WP_034859387.1\|338920_339739_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA
WP_010875101.1\|339747_340023_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_014857564.1\|340022_340691_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA
WP_034859390.1\|340683_341739_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA
WP_014857562.1\|341785_342322_-	hypothetical protein	NA	NA	NA	NA
WP_015633405.1\|342297_343653_-	type III secretion system ATPase SctN	NA	NA	NA	NA
WP_014857560.1\|343649_344276_-	nodulation protein NolV	NA	NA	NA	NA
WP_015633406.1\|344277_344916_-	nodulation protein NolU	NA	NA	NA	NA
WP_014857558.1\|344912_345782_-	nodulation protein NolT	NA	NA	NA	NA
WP_014857557.1\|345791_346286_-	nodulation protein NolB	NA	NA	NA	NA
WP_032490256.1\|346441_347146_+	nodulation protein NolW	NA	NA	NA	NA
WP_014857555.1\|347427_349218_+	type II secretion system effector nodulation protein NopX	NA	NA	NA	NA
WP_014857553.1\|349402_349831_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_014857550.1\|351180_352191_+	cysteine synthase family protein	NA	NA	NA	NA
WP_014857549.1\|352187_353327_+	hypothetical protein	NA	NA	NA	NA
WP_014857548.1\|353326_355213_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
WP_014857547.1\|355209_356424_+	MFS transporter	NA	NA	NA	NA
WP_014857546.1\|356681_357698_+	type II secretion system effector nodulation protein NopL	NA	NA	NA	NA
WP_014328393.1\|358247_359270_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014857545.1\|359488_360055_-	CpaD family pilus assembly lipoprotein	NA	NA	NA	NA
WP_034859716.1\|360064_361492_-	type II and III secretion system protein family protein	NA	NA	NA	NA
WP_014857543.1\|361515_362196_-	response regulator	W8CYM9	Bacillus_phage	3.8e-17	26.5
WP_014857541.1\|363364_363571_-	hypothetical protein	NA	NA	NA	NA
WP_037402985.1\|363890_364829_+	transcriptional regulator NodD2	NA	NA	NA	NA
WP_086018076.1\|365773_366963_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.0e-51	43.3
WP_014857536.1\|367953_368697_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.5e-56	46.1
WP_014327878.1\|369858_370692_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_037403140.1\|371725_372028_-	exopolysaccharide production repressor	NA	NA	NA	NA
WP_010875125.1\|372160_372337_-	hypothetical protein	NA	NA	NA	NA
WP_014857531.1\|372333_372537_-	hypothetical protein	NA	NA	NA	NA
WP_014857530.1\|372559_373048_-	NifX-associated nitrogen fixation protein	NA	NA	NA	NA
WP_015633414.1\|373300_374842_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_014857528.1\|374937_376452_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_010875130.1\|376547_377438_-	nitrogenase iron protein	NA	NA	NA	NA
WP_166436502.1\|377934_378972_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_014857526.1\|379179_379770_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014857525.1\|379762_380992_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_158499789.1\|381747_381894_-	hypothetical protein	NA	NA	NA	NA
WP_109023434.1\|382561_383278_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_037403195.1\|383399_383873_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_167414969.1\|384459_385185_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029451

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029451_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029451_3

287616-287688

Orphan

Consensus_repeat	Method
TCCACGGATCAGCTTGCCGCCTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029451_3

>merge|NZ_CP029451|3|287616-287688|CRISPRCasFinder
TCCACCGCCCACATTTCCGCCCTGAACACGGCGGCCGTCGCCAGCCTGACGACGGCACAGATGGCGGCCTTGT

>NZ_CP029451|3|3|287616-287688|CRISPRCasFinder
TCCACCGCCCACATTTCCGCCCTGA	ACACGGCGGCCGTCGCCAGCCTG
ACGACGGCACAGATGGCGGCCTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	unknown	unknown	gnl\|CDD\|227288
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP029451.1\|WP_014327304.1\|295851_296040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234943
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|223672
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236241
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|131685
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371989
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	unknown	unknown	gnl\|CDD\|167232

Protein	Function_ID	Function_description	E-value
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	gnl\|CDD\|227288	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.1139e-46
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.54472e-14
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	gnl\|CDD\|236241	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase.	0
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	4.4097e-69
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234943	PRK01343, PRK01343, zinc-binding protein; Provisional.	1.13389e-29
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.68428e-43
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	6.48638e-17
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.53717e-95
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.07299e-77
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|131685	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.	4.87292e-153
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	gnl\|CDD\|371989	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase. This domain family is found in bacteria and eukaryotes, and is approximately 110 amino acids in length.Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyzes the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH).	0.0028027
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	5.67949e-07
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.66794e-83
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.46565e-84
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	gnl\|CDD\|167232	PRK01441, PRK01441, Maf-like protein; Reviewed.	1.45834e-142

>NZ_CP029451.1|WP_014327300.1|285190_286348_+|UDP-galactopyranose-mutase
MRASGRIGIVGAGLSGAVIGRELAEAGHQVEIFDARNHIAGNCHTERDEETGVMIHVYGPHIFHTDDREVWDYVNSFQAFMPYKNRVKATSGDQVYSLPVNLHTINQFFGKTFRPDEARTFIEAQADTSIEDPKTFEEQALRFVGKDLYEAFFQGYTQKQWGCSPTELPASILKRLPVRFNYDDNYFAHKYQGMPENGYTDMIGRILDHPNINVSLKTRFVRAQKDDFAHVFYSGSLDGYLDHEFGPLGYRTLDFERFEYDGDYQGCAVMNYGDVSVPYTRITEHKHFSPWEEHKGSVCYREFSRECGPEDIPYYPIRLVKDKEQLAQYVERASRETAITFVGRLGTYRYLDMDVTIREALDTARLYLAREAENASMPVFLHSPI
>NZ_CP029451.1|WP_014327299.1|283887_285141_+|hypothetical-protein
MAPVILVTFAGRQKRMEILTRYIHSAMDAGIIDEWHVWDFTRSQQDHEWVTREFGPVRFMGSAAPYQTNGSVAPNQPLRLGATITNDLHIAIVPNGGGDDYFELVVGGWSNSHSVLRKLPLSQLRSFDRNDVPALWSRPTPGILSPGTANQIVINVDAAGVPSLHVNNVAIGRWPELDLSAGASVMVRGGWGADLELGNVRSRIQRFVGNPNEQMPYWQAYDYYAKRLKIFSDSIFLKCDDDIVYMDLEKLSDFIEFRRTNPKYLVVSANVVNNGVCAHWQQVAGSIPEGVGHFERPPGGFGGSLWQSAERANELHDYFLQTNSKHLPLPSKVIEWTERQSINFIAWLGKDLVHMALPKGDDERALTVDLPMLLDRPTAIYSDFTVSHLSFGPQEQGLALDRLIDAYDELMRNALAA
>NZ_CP029451.1|WP_014327298.1|281802_283860_+|hypothetical-protein
MTIYTHLASDPASPLAGFLERARQQRLPLTELFQFAESFNAAGQREQAAELYKSWIAYNDSNPLLHLVYFNYSVTLRQMGDLAGSIHALRACLKLEPRFGQGHINLGRALEDAGLTGQAIQQWQVYAEATSEITPERVAHRLMVLQHTGRVLENAGLMEEAESTLWKAIELRPDRTEAGQHWTSLRQRQCKWPTLAPSEHVSARQLLDALSPLTLACYADDPVFQLAKAYRYCKSLVGRPDLNGFPKLQPRQKSGTGQRLRVGYVSSDLRDHAVGFALSEVFETHDRSSVEIYAYYCGEARTGDATQTRMMGAIDCWRDISAVSDSDAAKQIIADEIDILVDVNGYTKHARTRIFAYRPAPVIVSFCGYPGTMGSPFHQYVIADEQIIPPENEIYYSEKVLRIPCNQPVDRKRQIASRPGRAEAGLPEDGFIFACFNGAQKITAACFDRWMAILAATPGSFLWLLGGGEDVDQRLKQAAQQRGVAPERLIFASKAPNPKHLARIGLADLFLDTFPYGAHSTAGDALTMGLPVLTFPGNGFASRFCSSIVAAAGVPELICDGPDDFVRKAVGFAKDRQSLANVREALESRHDASVLRDIPALVRRLEELFWQMQGECERGETPVPDLGNLDIYYEVGAEIMKENVEFVDGAAYRQRYVEKLAEWHAFSPIPFDSRLWTAATAGARR
>NZ_CP029451.1|WP_050983987.1|274288_275653_+|carboxymuconolactone-decarboxylase
MKMSKDWNGAKSSGGGTRDQDRRTMLKTSVGLAAAAALGSSAAAQTTGAPGNDRRARGLEALRAVGGGDFSQTLDPLSPDLSRLLIEDAYGDVMARPGLSQKTRELISVAVITVLGTARPALRFHIGGMLETGWSPREIVETLLHAVIYGGFPFAQDAVLLAREVFAERGITVGTGTGRPEGDDWTLGVQQLLMTGGDDAGAFARRVIDGSGPSPDLDRLTIEFAHGEIWNRPGLALKDRELATLAMVIAIGNLDSTVRFHLEACLRTGWTRAEIIELLIQMTVYVGWPKALMAVGPALAVFAEVEKPGGLAAPSSAGEAIAGQRTQAETDDARFNRGVAAMGEISQASGEAVVNAFQDIAPDLGRYILEFSYGDVFSRPGLDLKSRELAAVAALTTRGTNADETPLKVHVEAALNTGATKEEVTEAILHMLPYAGFSRVQSAMALASRVFSQP
>NZ_CP029451.1|WP_037391987.1|273256_274168_-|LysR-family-transcriptional-regulator
MKAVNIASIDLNLLVVFDALVAEGHATRAAERIGLTQPAVSHALNRLRALFGDPLFVRSPRGMVATPVALDAAPAIRSILEQVEVVLRGGRAFEPEESTRQFVLGLSDYAAFVLLPRLTARLERAAPNISLVIRNTSHGVGLAMLEEGTVELIAGNFPGPPSHLREELLYEEDFVCAGRGDHPALADPLDLDRYLSLRHLQVSTRGNPHGYVDAVLAERGLKRKVAVTVSHFLMAPFLVDSSDLVATEPRRLFEPMPSRLPLRFFPPPIDIPPFRVVQAWHARHDADPGHQWLRRVVREISQA
>NZ_CP029451.1|WP_014327294.1|272661_273036_-|VOC-family-protein
MFDHVKFGVSDYAASKAFFLKTLEPLGVAVVSEGPPTYGVELSPKGKTSLCLYQTEEKPAHLHLAFTAENRQQVEAFYRAALEAGGKDNGPPGLRPHYHANYYAAFVIGPDGHNIEVVCHEPEV
>NZ_CP029451.1|WP_014327293.1|271926_272457_+|deaminase-reductase
MAKLVFGMNQSLDGYVDHMAFAPSPTLFRHFIEEAQAQAGSVYGRLMYEVMRYWDDDHPEWDAEQYAFAAAWRNQPKWVVSRSLKSVGPNARLVEGDLEGAIRALKAERDGEIEVAGPDLAQSLTELGLIDEYRIYLHPVVLGHGKPYFAGPRPPLRLVTNDRIGEDVIRLTYVPA
>NZ_CP029451.1|WP_014327292.1|270860_271073_+|DNA-gyrase-inhibitor-YacG
MSGEGKKNGSNVEPLRPTRPCAECGRPSVREHYPFCSERCRNVDLNRWLSGSYAIPVADDESKADDGEDR
>NZ_CP029451.1|WP_014327291.1|270233_270854_+|Maf-like-protein
MTATQKLILASGSPRRVELLAQAGIEPARLLPMDLDETPKRAEHPRSLARRLSAEKAKAALAAIKGEPGWDGSYILAADTVVCVGRRILPKPELLSEASSTLHLLSGRSHRVYTGICLVTPDRTIRQKVVDTKVRFKRLSGLDIETYLASGQWRGKAGGYGIQGIAGSFVVKLVGSYTNVVGLPLYETVNLLIGEGYDVHGRWLEG
>NZ_CP029451.1|WP_014327290.1|269967_270186_+|translation-initiation-factor-IF-1
MAKEEVLEFPGVVTELLPNATFRVKLENDHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPYDLTKGRITYRFK
>NZ_CP029451.1|WP_037391989.1|293791_294865_-|GlxA-family-transcriptional-regulator
MRTALTETTAAAGKTVSDKGVLRVGFILARSFTLSAFSLFADALRLGSDVEDKSGRVNCDWEVLGSTRNFVMSSCGIQVAPTASLRPPTEFSYIAVVGGRLNVAEPLDRETVDYLHGAARAGVPIIGVCTGSFVLAEAGVLDGHAACVSWLHHNEFRARFPEIEVTSNRIFFEDGNIITCAGGSSVADLATYLIRKHVGEDAERNALEIMQITRRREASEMQPRNPLGPVPVHDKRISLALMVMEQHLEDLIGIDDVATVLGISRRQLERLFQNELGATPISVYLKLRLDAAMRLVASTDKPLIEIALETGFENVSHFIRKFRKAFSITPAAARKQLAAARGAAPSRRGRGAIYIPR
>NZ_CP029451.1|WP_014327303.1|295307_295769_-|YbaK/EbsC-family-protein
MSLTSVKEFFSEHAPDIDVIELEQSTATVALAAEGHGVEPAQIAKTLALRVGDDVILIVTRGDARLDNKKYKARFGTKARMLGFGEVESETGHPVGGVCPFGLAKPHTIYCDESLKAFDVVVPAAGAINAAVHISPHRMAELTGAEWIDVSET
>NZ_CP029451.1|WP_014327304.1|295851_296040_-|hypothetical-protein
MTDFYAEKIETALQSYMSDHPASSTRQEAISTILENWFASHGYLPPQQEGRRPEDLDASNDD
>NZ_CP029451.1|WP_014761069.1|296209_296464_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIESILVFLIVGAVAGWLAGLIVSGFGFGLIGNIVVGIIGALIAGYLFPAVGITLGTGILAAIIHSTIGAIILLVLIRIVKQA
>NZ_CP029451.1|WP_014327306.1|296660_297953_-|L-rhamnose-catabolism-isomerase
MTNMISTSAIEAENARRQEALRRDYEGLGERLSRRGIDIDAIKQKVAAYGVAVPSWGVGTGGTRFARFPGLGEPRNIFDKLEDCGVIQQLTRATPTVSLHIPWDKVADLTGLREKGTALGLGFDAMNSNTFSDAPGQPHSYKFGSLTHTDAATRRQAVEHNLECIEIGKALGSKALTVWIGDGSNFPGQSNFTRAFERYLDSMKAIYAALPEDWRIFTEHKMYEPAFYSTVVQDWGTNYLIAQELGPKAFCLVDLGHHAPNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDTGSIDPYRLFLVFNELVDAETRAAEGFNPAHMLDQSHNVTDPIESLMTSAMEVGRAYAQALLVDRQALDGHQQENDALMASETLKAAFRTDVEPILAMARLESGGAIAPVATYRASGYRAKVAAERPSVAGGGGGIV
>NZ_CP029451.1|WP_014327307.1|297966_300066_-|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase
MLDKQQGARLANLWDDAKAAGMSEAERLLYRSNLLGSDKRITNYGGGNTSAKVMEKDPLTGETAEVLWVKGSGGDVGTIKMDGFATLYMDKLRALKGIYRGVEFEDEMVGYLPHCTFNLNPRAASIDTPLHAYVPKVHVDHMHPDAIIAVAASKNSKELTKKIFGDEIGWLPWKRPGYELGLWLEKYCLENPKARGVVLESHGLFTWGDTAKEAYETTIEIINRAIAWFEGENTAPAFGGEAKPALAASERVAIAKKLMPVIRGLISAEEKKVGHFDDGKAVLDFVTSTSLEPLAALGTSCPDHFLRTKIRPLVVDFDPAQPDVEKTLAGLPEAIAAYRADYARYYERCKRADSPAMRDPNAVVYLVPGVGMITFAKDKATARISGEFYVNAINVMRGASGVSTYVGLPEQEAFDIEYWLLEEAKLQRMPKPKSLAGRIALVTGGAGGIGKATAVRLMQEGACVVLADIDETALENAQNELAARYGKDFVRSVSMNVTSETAVEAGFGDALLTFGGLDILVSNAGLASSAAIEDTTLALWNKNIDILATGYFLVSREAFRIFRSQKAGGNVVFVASKNGLAASPGASAYCTAKAAEIHLARCLALEGASAQIRVNVVNPDAVLRGSKIWSGEWKEQRAAAYKMDVDDLEAHYRERSMLKLSVFPEDIAEAIYFLASDMSAKSTGNIVNVDAGNAQSFTR
>NZ_CP029451.1|WP_014327309.1|300267_301080_+|DeoR/GlpR-transcriptional-regulator
MHEKERHRIILSAVQEKPVVTVPELVELTGSSEATIRRDVAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFSVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFDNDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADELVVLVDSSKFHKRSSLILCGLKRIATVITDSGIEDRHASMLESAGVNLVIANAKPKADAQTASTSA
>NZ_CP029451.1|WP_014327310.1|301208_302198_+|rhamnose-ABC-transporter-substrate-binding-protein
MKILKSLMVTAAVAAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKDGRLMHLNPSSSPLIGNMIIKLAADSLPEGGDVAVLSASATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQINVTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYDVINGAEAKPGAELKMGRMGTVKLDDNNEGAMADPFVYDASNVEEFAKIF
>NZ_CP029451.1|WP_037391991.1|302489_304001_+|sugar-ABC-transporter-ATP-binding-protein
MKPAITLEGISKSFPGVRALSDVSLALYPGSVTALIGENGAGKSTLVKILTGIYQPESGVIRVADTETTFPTALAAARAGVTAIHQETVLFDELSVAENIFLGHAPRNRFGLIDWKNLNADAEALLHRAGADFDPTIRLRDLGIAKKHLVAIARALSVDARVVIMDEPTAALSHKEIHELYALIERLKADGKAILFISHKFDEIFRIADRYTVFRDGAMVGEGLIADASQDDLVRMMVGRAVDSVYPKKDVKIGEPVLTVSGYRHPTEFEDINFELRRGEILGFYGLVGAGRSEFMQSLIGITRPSAGAVKLDGNVLVIRNPAEAIRAGIVYVPEERGRQGAIIGMPIFQNVTLPSLSHTSRTGFLKLANEFALAREYTSRLDLRAASLDQDVGTLSGGNQQKVVIAKWLATKPKVIILDEPTKGIDIGSKAAVHAFMSELAAQGLSVIMVSSEIPEIMGMSDRVIVMREGRIAGRFERSELTAEKLVRAAAGIETQLSGRAA
>NZ_CP029451.1|WP_014327312.1|303997_304978_+|ABC-transporter-permease
MIAKLLKNREILLVVAVVVLLALIALRFPGFVAPSNLARVYNDTSILIILALGQMAVILTRCIDLSMAANLALCGMVAAMLNAAFPGLPIPVIILAAMALGGLLGMINGTLVWKLDIPPIVVTLGTLTIYRGLIFLLTDGKWINAHEMSDTFKALPRLALAGMPVLSWLSLLMIAAMFLVMSRTPLGRAFYAVGGNPHAAIYTGIDVGRTRFFAYCLSGTLAGLSGYLWVSRYAVAYVDIAAGFELDIIAACVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVINISPFAQMAISGTVIIIAVAVNARAERRKGRVILRKAEAV

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Crispr_ID: NZ_CP029451_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029451_1

287211-287284

Orphan

Consensus_repeat	Method
TCCACGGATCAGCTTGCCGCCTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029451_1

>merge|NZ_CP029451|1|287211-287284|CRISPRCasFinder
TCCACGGATCAGCTTGCCGCCTTGAGCACCCGTGCCGTCGCCGCCCTGTCGACCGCGCAGATCGCCGCCTTGTC

>NZ_CP029451|1|1|287211-287284|CRISPRCasFinder
TCCACGGATCAGCTTGCCGCCTTGA	GCACCCGTGCCGTCGCCGCCCTG
TCGACCGCGCAGATCGCCGCCTTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	unknown	unknown	gnl\|CDD\|227288
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP029451.1\|WP_014327304.1\|295851_296040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234943
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|223672
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236241
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|131685
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371989
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	unknown	unknown	gnl\|CDD\|167232

Protein	Function_ID	Function_description	E-value
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	gnl\|CDD\|227288	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.1139e-46
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.54472e-14
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	gnl\|CDD\|236241	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase.	0
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	4.4097e-69
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234943	PRK01343, PRK01343, zinc-binding protein; Provisional.	1.13389e-29
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.68428e-43
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	6.48638e-17
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.53717e-95
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.07299e-77
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|131685	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.	4.87292e-153
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	gnl\|CDD\|371989	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase. This domain family is found in bacteria and eukaryotes, and is approximately 110 amino acids in length.Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyzes the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH).	0.0028027
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	5.67949e-07
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.66794e-83
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.46565e-84
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	gnl\|CDD\|167232	PRK01441, PRK01441, Maf-like protein; Reviewed.	1.45834e-142

>NZ_CP029451.1|WP_014327300.1|285190_286348_+|UDP-galactopyranose-mutase
MRASGRIGIVGAGLSGAVIGRELAEAGHQVEIFDARNHIAGNCHTERDEETGVMIHVYGPHIFHTDDREVWDYVNSFQAFMPYKNRVKATSGDQVYSLPVNLHTINQFFGKTFRPDEARTFIEAQADTSIEDPKTFEEQALRFVGKDLYEAFFQGYTQKQWGCSPTELPASILKRLPVRFNYDDNYFAHKYQGMPENGYTDMIGRILDHPNINVSLKTRFVRAQKDDFAHVFYSGSLDGYLDHEFGPLGYRTLDFERFEYDGDYQGCAVMNYGDVSVPYTRITEHKHFSPWEEHKGSVCYREFSRECGPEDIPYYPIRLVKDKEQLAQYVERASRETAITFVGRLGTYRYLDMDVTIREALDTARLYLAREAENASMPVFLHSPI
>NZ_CP029451.1|WP_014327299.1|283887_285141_+|hypothetical-protein
MAPVILVTFAGRQKRMEILTRYIHSAMDAGIIDEWHVWDFTRSQQDHEWVTREFGPVRFMGSAAPYQTNGSVAPNQPLRLGATITNDLHIAIVPNGGGDDYFELVVGGWSNSHSVLRKLPLSQLRSFDRNDVPALWSRPTPGILSPGTANQIVINVDAAGVPSLHVNNVAIGRWPELDLSAGASVMVRGGWGADLELGNVRSRIQRFVGNPNEQMPYWQAYDYYAKRLKIFSDSIFLKCDDDIVYMDLEKLSDFIEFRRTNPKYLVVSANVVNNGVCAHWQQVAGSIPEGVGHFERPPGGFGGSLWQSAERANELHDYFLQTNSKHLPLPSKVIEWTERQSINFIAWLGKDLVHMALPKGDDERALTVDLPMLLDRPTAIYSDFTVSHLSFGPQEQGLALDRLIDAYDELMRNALAA
>NZ_CP029451.1|WP_014327298.1|281802_283860_+|hypothetical-protein
MTIYTHLASDPASPLAGFLERARQQRLPLTELFQFAESFNAAGQREQAAELYKSWIAYNDSNPLLHLVYFNYSVTLRQMGDLAGSIHALRACLKLEPRFGQGHINLGRALEDAGLTGQAIQQWQVYAEATSEITPERVAHRLMVLQHTGRVLENAGLMEEAESTLWKAIELRPDRTEAGQHWTSLRQRQCKWPTLAPSEHVSARQLLDALSPLTLACYADDPVFQLAKAYRYCKSLVGRPDLNGFPKLQPRQKSGTGQRLRVGYVSSDLRDHAVGFALSEVFETHDRSSVEIYAYYCGEARTGDATQTRMMGAIDCWRDISAVSDSDAAKQIIADEIDILVDVNGYTKHARTRIFAYRPAPVIVSFCGYPGTMGSPFHQYVIADEQIIPPENEIYYSEKVLRIPCNQPVDRKRQIASRPGRAEAGLPEDGFIFACFNGAQKITAACFDRWMAILAATPGSFLWLLGGGEDVDQRLKQAAQQRGVAPERLIFASKAPNPKHLARIGLADLFLDTFPYGAHSTAGDALTMGLPVLTFPGNGFASRFCSSIVAAAGVPELICDGPDDFVRKAVGFAKDRQSLANVREALESRHDASVLRDIPALVRRLEELFWQMQGECERGETPVPDLGNLDIYYEVGAEIMKENVEFVDGAAYRQRYVEKLAEWHAFSPIPFDSRLWTAATAGARR
>NZ_CP029451.1|WP_050983987.1|274288_275653_+|carboxymuconolactone-decarboxylase
MKMSKDWNGAKSSGGGTRDQDRRTMLKTSVGLAAAAALGSSAAAQTTGAPGNDRRARGLEALRAVGGGDFSQTLDPLSPDLSRLLIEDAYGDVMARPGLSQKTRELISVAVITVLGTARPALRFHIGGMLETGWSPREIVETLLHAVIYGGFPFAQDAVLLAREVFAERGITVGTGTGRPEGDDWTLGVQQLLMTGGDDAGAFARRVIDGSGPSPDLDRLTIEFAHGEIWNRPGLALKDRELATLAMVIAIGNLDSTVRFHLEACLRTGWTRAEIIELLIQMTVYVGWPKALMAVGPALAVFAEVEKPGGLAAPSSAGEAIAGQRTQAETDDARFNRGVAAMGEISQASGEAVVNAFQDIAPDLGRYILEFSYGDVFSRPGLDLKSRELAAVAALTTRGTNADETPLKVHVEAALNTGATKEEVTEAILHMLPYAGFSRVQSAMALASRVFSQP
>NZ_CP029451.1|WP_037391987.1|273256_274168_-|LysR-family-transcriptional-regulator
MKAVNIASIDLNLLVVFDALVAEGHATRAAERIGLTQPAVSHALNRLRALFGDPLFVRSPRGMVATPVALDAAPAIRSILEQVEVVLRGGRAFEPEESTRQFVLGLSDYAAFVLLPRLTARLERAAPNISLVIRNTSHGVGLAMLEEGTVELIAGNFPGPPSHLREELLYEEDFVCAGRGDHPALADPLDLDRYLSLRHLQVSTRGNPHGYVDAVLAERGLKRKVAVTVSHFLMAPFLVDSSDLVATEPRRLFEPMPSRLPLRFFPPPIDIPPFRVVQAWHARHDADPGHQWLRRVVREISQA
>NZ_CP029451.1|WP_014327294.1|272661_273036_-|VOC-family-protein
MFDHVKFGVSDYAASKAFFLKTLEPLGVAVVSEGPPTYGVELSPKGKTSLCLYQTEEKPAHLHLAFTAENRQQVEAFYRAALEAGGKDNGPPGLRPHYHANYYAAFVIGPDGHNIEVVCHEPEV
>NZ_CP029451.1|WP_014327293.1|271926_272457_+|deaminase-reductase
MAKLVFGMNQSLDGYVDHMAFAPSPTLFRHFIEEAQAQAGSVYGRLMYEVMRYWDDDHPEWDAEQYAFAAAWRNQPKWVVSRSLKSVGPNARLVEGDLEGAIRALKAERDGEIEVAGPDLAQSLTELGLIDEYRIYLHPVVLGHGKPYFAGPRPPLRLVTNDRIGEDVIRLTYVPA
>NZ_CP029451.1|WP_014327292.1|270860_271073_+|DNA-gyrase-inhibitor-YacG
MSGEGKKNGSNVEPLRPTRPCAECGRPSVREHYPFCSERCRNVDLNRWLSGSYAIPVADDESKADDGEDR
>NZ_CP029451.1|WP_014327291.1|270233_270854_+|Maf-like-protein
MTATQKLILASGSPRRVELLAQAGIEPARLLPMDLDETPKRAEHPRSLARRLSAEKAKAALAAIKGEPGWDGSYILAADTVVCVGRRILPKPELLSEASSTLHLLSGRSHRVYTGICLVTPDRTIRQKVVDTKVRFKRLSGLDIETYLASGQWRGKAGGYGIQGIAGSFVVKLVGSYTNVVGLPLYETVNLLIGEGYDVHGRWLEG
>NZ_CP029451.1|WP_014327290.1|269967_270186_+|translation-initiation-factor-IF-1
MAKEEVLEFPGVVTELLPNATFRVKLENDHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPYDLTKGRITYRFK
>NZ_CP029451.1|WP_037391989.1|293791_294865_-|GlxA-family-transcriptional-regulator
MRTALTETTAAAGKTVSDKGVLRVGFILARSFTLSAFSLFADALRLGSDVEDKSGRVNCDWEVLGSTRNFVMSSCGIQVAPTASLRPPTEFSYIAVVGGRLNVAEPLDRETVDYLHGAARAGVPIIGVCTGSFVLAEAGVLDGHAACVSWLHHNEFRARFPEIEVTSNRIFFEDGNIITCAGGSSVADLATYLIRKHVGEDAERNALEIMQITRRREASEMQPRNPLGPVPVHDKRISLALMVMEQHLEDLIGIDDVATVLGISRRQLERLFQNELGATPISVYLKLRLDAAMRLVASTDKPLIEIALETGFENVSHFIRKFRKAFSITPAAARKQLAAARGAAPSRRGRGAIYIPR
>NZ_CP029451.1|WP_014327303.1|295307_295769_-|YbaK/EbsC-family-protein
MSLTSVKEFFSEHAPDIDVIELEQSTATVALAAEGHGVEPAQIAKTLALRVGDDVILIVTRGDARLDNKKYKARFGTKARMLGFGEVESETGHPVGGVCPFGLAKPHTIYCDESLKAFDVVVPAAGAINAAVHISPHRMAELTGAEWIDVSET
>NZ_CP029451.1|WP_014327304.1|295851_296040_-|hypothetical-protein
MTDFYAEKIETALQSYMSDHPASSTRQEAISTILENWFASHGYLPPQQEGRRPEDLDASNDD
>NZ_CP029451.1|WP_014761069.1|296209_296464_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIESILVFLIVGAVAGWLAGLIVSGFGFGLIGNIVVGIIGALIAGYLFPAVGITLGTGILAAIIHSTIGAIILLVLIRIVKQA
>NZ_CP029451.1|WP_014327306.1|296660_297953_-|L-rhamnose-catabolism-isomerase
MTNMISTSAIEAENARRQEALRRDYEGLGERLSRRGIDIDAIKQKVAAYGVAVPSWGVGTGGTRFARFPGLGEPRNIFDKLEDCGVIQQLTRATPTVSLHIPWDKVADLTGLREKGTALGLGFDAMNSNTFSDAPGQPHSYKFGSLTHTDAATRRQAVEHNLECIEIGKALGSKALTVWIGDGSNFPGQSNFTRAFERYLDSMKAIYAALPEDWRIFTEHKMYEPAFYSTVVQDWGTNYLIAQELGPKAFCLVDLGHHAPNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDTGSIDPYRLFLVFNELVDAETRAAEGFNPAHMLDQSHNVTDPIESLMTSAMEVGRAYAQALLVDRQALDGHQQENDALMASETLKAAFRTDVEPILAMARLESGGAIAPVATYRASGYRAKVAAERPSVAGGGGGIV
>NZ_CP029451.1|WP_014327307.1|297966_300066_-|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase
MLDKQQGARLANLWDDAKAAGMSEAERLLYRSNLLGSDKRITNYGGGNTSAKVMEKDPLTGETAEVLWVKGSGGDVGTIKMDGFATLYMDKLRALKGIYRGVEFEDEMVGYLPHCTFNLNPRAASIDTPLHAYVPKVHVDHMHPDAIIAVAASKNSKELTKKIFGDEIGWLPWKRPGYELGLWLEKYCLENPKARGVVLESHGLFTWGDTAKEAYETTIEIINRAIAWFEGENTAPAFGGEAKPALAASERVAIAKKLMPVIRGLISAEEKKVGHFDDGKAVLDFVTSTSLEPLAALGTSCPDHFLRTKIRPLVVDFDPAQPDVEKTLAGLPEAIAAYRADYARYYERCKRADSPAMRDPNAVVYLVPGVGMITFAKDKATARISGEFYVNAINVMRGASGVSTYVGLPEQEAFDIEYWLLEEAKLQRMPKPKSLAGRIALVTGGAGGIGKATAVRLMQEGACVVLADIDETALENAQNELAARYGKDFVRSVSMNVTSETAVEAGFGDALLTFGGLDILVSNAGLASSAAIEDTTLALWNKNIDILATGYFLVSREAFRIFRSQKAGGNVVFVASKNGLAASPGASAYCTAKAAEIHLARCLALEGASAQIRVNVVNPDAVLRGSKIWSGEWKEQRAAAYKMDVDDLEAHYRERSMLKLSVFPEDIAEAIYFLASDMSAKSTGNIVNVDAGNAQSFTR
>NZ_CP029451.1|WP_014327309.1|300267_301080_+|DeoR/GlpR-transcriptional-regulator
MHEKERHRIILSAVQEKPVVTVPELVELTGSSEATIRRDVAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFSVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFDNDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADELVVLVDSSKFHKRSSLILCGLKRIATVITDSGIEDRHASMLESAGVNLVIANAKPKADAQTASTSA
>NZ_CP029451.1|WP_014327310.1|301208_302198_+|rhamnose-ABC-transporter-substrate-binding-protein
MKILKSLMVTAAVAAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKDGRLMHLNPSSSPLIGNMIIKLAADSLPEGGDVAVLSASATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQINVTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYDVINGAEAKPGAELKMGRMGTVKLDDNNEGAMADPFVYDASNVEEFAKIF
>NZ_CP029451.1|WP_037391991.1|302489_304001_+|sugar-ABC-transporter-ATP-binding-protein
MKPAITLEGISKSFPGVRALSDVSLALYPGSVTALIGENGAGKSTLVKILTGIYQPESGVIRVADTETTFPTALAAARAGVTAIHQETVLFDELSVAENIFLGHAPRNRFGLIDWKNLNADAEALLHRAGADFDPTIRLRDLGIAKKHLVAIARALSVDARVVIMDEPTAALSHKEIHELYALIERLKADGKAILFISHKFDEIFRIADRYTVFRDGAMVGEGLIADASQDDLVRMMVGRAVDSVYPKKDVKIGEPVLTVSGYRHPTEFEDINFELRRGEILGFYGLVGAGRSEFMQSLIGITRPSAGAVKLDGNVLVIRNPAEAIRAGIVYVPEERGRQGAIIGMPIFQNVTLPSLSHTSRTGFLKLANEFALAREYTSRLDLRAASLDQDVGTLSGGNQQKVVIAKWLATKPKVIILDEPTKGIDIGSKAAVHAFMSELAAQGLSVIMVSSEIPEIMGMSDRVIVMREGRIAGRFERSELTAEKLVRAAAGIETQLSGRAA
>NZ_CP029451.1|WP_014327312.1|303997_304978_+|ABC-transporter-permease
MIAKLLKNREILLVVAVVVLLALIALRFPGFVAPSNLARVYNDTSILIILALGQMAVILTRCIDLSMAANLALCGMVAAMLNAAFPGLPIPVIILAAMALGGLLGMINGTLVWKLDIPPIVVTLGTLTIYRGLIFLLTDGKWINAHEMSDTFKALPRLALAGMPVLSWLSLLMIAAMFLVMSRTPLGRAFYAVGGNPHAAIYTGIDVGRTRFFAYCLSGTLAGLSGYLWVSRYAVAYVDIAAGFELDIIAACVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVINISPFAQMAISGTVIIIAVAVNARAERRKGRVILRKAEAV

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Crispr_ID: NZ_CP029451_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029451_2

287379-287452

Orphan

Consensus_repeat	Method
TCCACGGATCAGCTTGCCGCCTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029451_2

>merge|NZ_CP029451|2|287379-287452|CRISPRCasFinder
TCCACCGAGCAGATTGCCGCGCTGAGCGCCTCGGCAATTTCGGGGCTTTCCACCAAACAGATCGCCACCTTGAC

>NZ_CP029451|2|2|287379-287452|CRISPRCasFinder
TCCACCGAGCAGATTGCCGCGCTGA	GCGCCTCGGCAATTTCGGGGCTT
TCCACCAAACAGATCGCCACCTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	unknown	unknown	gnl\|CDD\|227288
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP029451.1\|WP_014327304.1\|295851_296040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234943
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|223672
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236241
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|131685
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371989
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	unknown	unknown	gnl\|CDD\|167232

Protein	Function_ID	Function_description	E-value
NZ_CP029451.1\|WP_014327306.1\|296660_297953_-\|L-rhamnose-catabolism-isomerase	gnl\|CDD\|227288	COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_014327298.1\|281802_283860_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP029451.1\|WP_014327290.1\|269967_270186_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.1139e-46
NZ_CP029451.1\|WP_014327293.1\|271926_272457_+\|deaminase-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.54472e-14
NZ_CP029451.1\|WP_014327307.1\|297966_300066_-\|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase	gnl\|CDD\|236241	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase.	0
NZ_CP029451.1\|WP_014327303.1\|295307_295769_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	4.4097e-69
NZ_CP029451.1\|WP_014327292.1\|270860_271073_+\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234943	PRK01343, PRK01343, zinc-binding protein; Provisional.	1.13389e-29
NZ_CP029451.1\|WP_014327294.1\|272661_273036_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.68428e-43
NZ_CP029451.1\|WP_050983987.1\|274288_275653_+\|carboxymuconolactone-decarboxylase	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	6.48638e-17
NZ_CP029451.1\|WP_014327300.1\|285190_286348_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029451.1\|WP_037391991.1\|302489_304001_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP029451.1\|WP_037391989.1\|293791_294865_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.53717e-95
NZ_CP029451.1\|WP_037391987.1\|273256_274168_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.07299e-77
NZ_CP029451.1\|WP_014327310.1\|301208_302198_+\|rhamnose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|131685	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.	4.87292e-153
NZ_CP029451.1\|WP_014327299.1\|283887_285141_+\|hypothetical-protein	gnl\|CDD\|371989	pfam12248, Methyltransf_FA, Farnesoic acid 0-methyl transferase. This domain family is found in bacteria and eukaryotes, and is approximately 110 amino acids in length.Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyzes the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH).	0.0028027
NZ_CP029451.1\|WP_014761069.1\|296209_296464_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	5.67949e-07
NZ_CP029451.1\|WP_014327309.1\|300267_301080_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.66794e-83
NZ_CP029451.1\|WP_014327312.1\|303997_304978_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.46565e-84
NZ_CP029451.1\|WP_014327291.1\|270233_270854_+\|Maf-like-protein	gnl\|CDD\|167232	PRK01441, PRK01441, Maf-like protein; Reviewed.	1.45834e-142

>NZ_CP029451.1|WP_014327300.1|285190_286348_+|UDP-galactopyranose-mutase
MRASGRIGIVGAGLSGAVIGRELAEAGHQVEIFDARNHIAGNCHTERDEETGVMIHVYGPHIFHTDDREVWDYVNSFQAFMPYKNRVKATSGDQVYSLPVNLHTINQFFGKTFRPDEARTFIEAQADTSIEDPKTFEEQALRFVGKDLYEAFFQGYTQKQWGCSPTELPASILKRLPVRFNYDDNYFAHKYQGMPENGYTDMIGRILDHPNINVSLKTRFVRAQKDDFAHVFYSGSLDGYLDHEFGPLGYRTLDFERFEYDGDYQGCAVMNYGDVSVPYTRITEHKHFSPWEEHKGSVCYREFSRECGPEDIPYYPIRLVKDKEQLAQYVERASRETAITFVGRLGTYRYLDMDVTIREALDTARLYLAREAENASMPVFLHSPI
>NZ_CP029451.1|WP_014327299.1|283887_285141_+|hypothetical-protein
MAPVILVTFAGRQKRMEILTRYIHSAMDAGIIDEWHVWDFTRSQQDHEWVTREFGPVRFMGSAAPYQTNGSVAPNQPLRLGATITNDLHIAIVPNGGGDDYFELVVGGWSNSHSVLRKLPLSQLRSFDRNDVPALWSRPTPGILSPGTANQIVINVDAAGVPSLHVNNVAIGRWPELDLSAGASVMVRGGWGADLELGNVRSRIQRFVGNPNEQMPYWQAYDYYAKRLKIFSDSIFLKCDDDIVYMDLEKLSDFIEFRRTNPKYLVVSANVVNNGVCAHWQQVAGSIPEGVGHFERPPGGFGGSLWQSAERANELHDYFLQTNSKHLPLPSKVIEWTERQSINFIAWLGKDLVHMALPKGDDERALTVDLPMLLDRPTAIYSDFTVSHLSFGPQEQGLALDRLIDAYDELMRNALAA
>NZ_CP029451.1|WP_014327298.1|281802_283860_+|hypothetical-protein
MTIYTHLASDPASPLAGFLERARQQRLPLTELFQFAESFNAAGQREQAAELYKSWIAYNDSNPLLHLVYFNYSVTLRQMGDLAGSIHALRACLKLEPRFGQGHINLGRALEDAGLTGQAIQQWQVYAEATSEITPERVAHRLMVLQHTGRVLENAGLMEEAESTLWKAIELRPDRTEAGQHWTSLRQRQCKWPTLAPSEHVSARQLLDALSPLTLACYADDPVFQLAKAYRYCKSLVGRPDLNGFPKLQPRQKSGTGQRLRVGYVSSDLRDHAVGFALSEVFETHDRSSVEIYAYYCGEARTGDATQTRMMGAIDCWRDISAVSDSDAAKQIIADEIDILVDVNGYTKHARTRIFAYRPAPVIVSFCGYPGTMGSPFHQYVIADEQIIPPENEIYYSEKVLRIPCNQPVDRKRQIASRPGRAEAGLPEDGFIFACFNGAQKITAACFDRWMAILAATPGSFLWLLGGGEDVDQRLKQAAQQRGVAPERLIFASKAPNPKHLARIGLADLFLDTFPYGAHSTAGDALTMGLPVLTFPGNGFASRFCSSIVAAAGVPELICDGPDDFVRKAVGFAKDRQSLANVREALESRHDASVLRDIPALVRRLEELFWQMQGECERGETPVPDLGNLDIYYEVGAEIMKENVEFVDGAAYRQRYVEKLAEWHAFSPIPFDSRLWTAATAGARR
>NZ_CP029451.1|WP_050983987.1|274288_275653_+|carboxymuconolactone-decarboxylase
MKMSKDWNGAKSSGGGTRDQDRRTMLKTSVGLAAAAALGSSAAAQTTGAPGNDRRARGLEALRAVGGGDFSQTLDPLSPDLSRLLIEDAYGDVMARPGLSQKTRELISVAVITVLGTARPALRFHIGGMLETGWSPREIVETLLHAVIYGGFPFAQDAVLLAREVFAERGITVGTGTGRPEGDDWTLGVQQLLMTGGDDAGAFARRVIDGSGPSPDLDRLTIEFAHGEIWNRPGLALKDRELATLAMVIAIGNLDSTVRFHLEACLRTGWTRAEIIELLIQMTVYVGWPKALMAVGPALAVFAEVEKPGGLAAPSSAGEAIAGQRTQAETDDARFNRGVAAMGEISQASGEAVVNAFQDIAPDLGRYILEFSYGDVFSRPGLDLKSRELAAVAALTTRGTNADETPLKVHVEAALNTGATKEEVTEAILHMLPYAGFSRVQSAMALASRVFSQP
>NZ_CP029451.1|WP_037391987.1|273256_274168_-|LysR-family-transcriptional-regulator
MKAVNIASIDLNLLVVFDALVAEGHATRAAERIGLTQPAVSHALNRLRALFGDPLFVRSPRGMVATPVALDAAPAIRSILEQVEVVLRGGRAFEPEESTRQFVLGLSDYAAFVLLPRLTARLERAAPNISLVIRNTSHGVGLAMLEEGTVELIAGNFPGPPSHLREELLYEEDFVCAGRGDHPALADPLDLDRYLSLRHLQVSTRGNPHGYVDAVLAERGLKRKVAVTVSHFLMAPFLVDSSDLVATEPRRLFEPMPSRLPLRFFPPPIDIPPFRVVQAWHARHDADPGHQWLRRVVREISQA
>NZ_CP029451.1|WP_014327294.1|272661_273036_-|VOC-family-protein
MFDHVKFGVSDYAASKAFFLKTLEPLGVAVVSEGPPTYGVELSPKGKTSLCLYQTEEKPAHLHLAFTAENRQQVEAFYRAALEAGGKDNGPPGLRPHYHANYYAAFVIGPDGHNIEVVCHEPEV
>NZ_CP029451.1|WP_014327293.1|271926_272457_+|deaminase-reductase
MAKLVFGMNQSLDGYVDHMAFAPSPTLFRHFIEEAQAQAGSVYGRLMYEVMRYWDDDHPEWDAEQYAFAAAWRNQPKWVVSRSLKSVGPNARLVEGDLEGAIRALKAERDGEIEVAGPDLAQSLTELGLIDEYRIYLHPVVLGHGKPYFAGPRPPLRLVTNDRIGEDVIRLTYVPA
>NZ_CP029451.1|WP_014327292.1|270860_271073_+|DNA-gyrase-inhibitor-YacG
MSGEGKKNGSNVEPLRPTRPCAECGRPSVREHYPFCSERCRNVDLNRWLSGSYAIPVADDESKADDGEDR
>NZ_CP029451.1|WP_014327291.1|270233_270854_+|Maf-like-protein
MTATQKLILASGSPRRVELLAQAGIEPARLLPMDLDETPKRAEHPRSLARRLSAEKAKAALAAIKGEPGWDGSYILAADTVVCVGRRILPKPELLSEASSTLHLLSGRSHRVYTGICLVTPDRTIRQKVVDTKVRFKRLSGLDIETYLASGQWRGKAGGYGIQGIAGSFVVKLVGSYTNVVGLPLYETVNLLIGEGYDVHGRWLEG
>NZ_CP029451.1|WP_014327290.1|269967_270186_+|translation-initiation-factor-IF-1
MAKEEVLEFPGVVTELLPNATFRVKLENDHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPYDLTKGRITYRFK
>NZ_CP029451.1|WP_037391989.1|293791_294865_-|GlxA-family-transcriptional-regulator
MRTALTETTAAAGKTVSDKGVLRVGFILARSFTLSAFSLFADALRLGSDVEDKSGRVNCDWEVLGSTRNFVMSSCGIQVAPTASLRPPTEFSYIAVVGGRLNVAEPLDRETVDYLHGAARAGVPIIGVCTGSFVLAEAGVLDGHAACVSWLHHNEFRARFPEIEVTSNRIFFEDGNIITCAGGSSVADLATYLIRKHVGEDAERNALEIMQITRRREASEMQPRNPLGPVPVHDKRISLALMVMEQHLEDLIGIDDVATVLGISRRQLERLFQNELGATPISVYLKLRLDAAMRLVASTDKPLIEIALETGFENVSHFIRKFRKAFSITPAAARKQLAAARGAAPSRRGRGAIYIPR
>NZ_CP029451.1|WP_014327303.1|295307_295769_-|YbaK/EbsC-family-protein
MSLTSVKEFFSEHAPDIDVIELEQSTATVALAAEGHGVEPAQIAKTLALRVGDDVILIVTRGDARLDNKKYKARFGTKARMLGFGEVESETGHPVGGVCPFGLAKPHTIYCDESLKAFDVVVPAAGAINAAVHISPHRMAELTGAEWIDVSET
>NZ_CP029451.1|WP_014327304.1|295851_296040_-|hypothetical-protein
MTDFYAEKIETALQSYMSDHPASSTRQEAISTILENWFASHGYLPPQQEGRRPEDLDASNDD
>NZ_CP029451.1|WP_014761069.1|296209_296464_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIESILVFLIVGAVAGWLAGLIVSGFGFGLIGNIVVGIIGALIAGYLFPAVGITLGTGILAAIIHSTIGAIILLVLIRIVKQA
>NZ_CP029451.1|WP_014327306.1|296660_297953_-|L-rhamnose-catabolism-isomerase
MTNMISTSAIEAENARRQEALRRDYEGLGERLSRRGIDIDAIKQKVAAYGVAVPSWGVGTGGTRFARFPGLGEPRNIFDKLEDCGVIQQLTRATPTVSLHIPWDKVADLTGLREKGTALGLGFDAMNSNTFSDAPGQPHSYKFGSLTHTDAATRRQAVEHNLECIEIGKALGSKALTVWIGDGSNFPGQSNFTRAFERYLDSMKAIYAALPEDWRIFTEHKMYEPAFYSTVVQDWGTNYLIAQELGPKAFCLVDLGHHAPNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDTGSIDPYRLFLVFNELVDAETRAAEGFNPAHMLDQSHNVTDPIESLMTSAMEVGRAYAQALLVDRQALDGHQQENDALMASETLKAAFRTDVEPILAMARLESGGAIAPVATYRASGYRAKVAAERPSVAGGGGGIV
>NZ_CP029451.1|WP_014327307.1|297966_300066_-|bifunctional-rhamnulose-1-phosphate-aldolase/short-chain-dehydrogenase
MLDKQQGARLANLWDDAKAAGMSEAERLLYRSNLLGSDKRITNYGGGNTSAKVMEKDPLTGETAEVLWVKGSGGDVGTIKMDGFATLYMDKLRALKGIYRGVEFEDEMVGYLPHCTFNLNPRAASIDTPLHAYVPKVHVDHMHPDAIIAVAASKNSKELTKKIFGDEIGWLPWKRPGYELGLWLEKYCLENPKARGVVLESHGLFTWGDTAKEAYETTIEIINRAIAWFEGENTAPAFGGEAKPALAASERVAIAKKLMPVIRGLISAEEKKVGHFDDGKAVLDFVTSTSLEPLAALGTSCPDHFLRTKIRPLVVDFDPAQPDVEKTLAGLPEAIAAYRADYARYYERCKRADSPAMRDPNAVVYLVPGVGMITFAKDKATARISGEFYVNAINVMRGASGVSTYVGLPEQEAFDIEYWLLEEAKLQRMPKPKSLAGRIALVTGGAGGIGKATAVRLMQEGACVVLADIDETALENAQNELAARYGKDFVRSVSMNVTSETAVEAGFGDALLTFGGLDILVSNAGLASSAAIEDTTLALWNKNIDILATGYFLVSREAFRIFRSQKAGGNVVFVASKNGLAASPGASAYCTAKAAEIHLARCLALEGASAQIRVNVVNPDAVLRGSKIWSGEWKEQRAAAYKMDVDDLEAHYRERSMLKLSVFPEDIAEAIYFLASDMSAKSTGNIVNVDAGNAQSFTR
>NZ_CP029451.1|WP_014327309.1|300267_301080_+|DeoR/GlpR-transcriptional-regulator
MHEKERHRIILSAVQEKPVVTVPELVELTGSSEATIRRDVAALHVQKRLRRVRGGAEAINPPQFVGLAGRPFSVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRRMQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFDNDVTRNFYARRMFMGAQGLGPLGLMEADPLLIQAEQKLIDQADELVVLVDSSKFHKRSSLILCGLKRIATVITDSGIEDRHASMLESAGVNLVIANAKPKADAQTASTSA
>NZ_CP029451.1|WP_014327310.1|301208_302198_+|rhamnose-ABC-transporter-substrate-binding-protein
MKILKSLMVTAAVAAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKDGRLMHLNPSSSPLIGNMIIKLAADSLPEGGDVAVLSASATATNQNTWIAEMKKVQGNYKGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQINVTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYDVINGAEAKPGAELKMGRMGTVKLDDNNEGAMADPFVYDASNVEEFAKIF
>NZ_CP029451.1|WP_037391991.1|302489_304001_+|sugar-ABC-transporter-ATP-binding-protein
MKPAITLEGISKSFPGVRALSDVSLALYPGSVTALIGENGAGKSTLVKILTGIYQPESGVIRVADTETTFPTALAAARAGVTAIHQETVLFDELSVAENIFLGHAPRNRFGLIDWKNLNADAEALLHRAGADFDPTIRLRDLGIAKKHLVAIARALSVDARVVIMDEPTAALSHKEIHELYALIERLKADGKAILFISHKFDEIFRIADRYTVFRDGAMVGEGLIADASQDDLVRMMVGRAVDSVYPKKDVKIGEPVLTVSGYRHPTEFEDINFELRRGEILGFYGLVGAGRSEFMQSLIGITRPSAGAVKLDGNVLVIRNPAEAIRAGIVYVPEERGRQGAIIGMPIFQNVTLPSLSHTSRTGFLKLANEFALAREYTSRLDLRAASLDQDVGTLSGGNQQKVVIAKWLATKPKVIILDEPTKGIDIGSKAAVHAFMSELAAQGLSVIMVSSEIPEIMGMSDRVIVMREGRIAGRFERSELTAEKLVRAAAGIETQLSGRAA
>NZ_CP029451.1|WP_014327312.1|303997_304978_+|ABC-transporter-permease
MIAKLLKNREILLVVAVVVLLALIALRFPGFVAPSNLARVYNDTSILIILALGQMAVILTRCIDLSMAANLALCGMVAAMLNAAFPGLPIPVIILAAMALGGLLGMINGTLVWKLDIPPIVVTLGTLTIYRGLIFLLTDGKWINAHEMSDTFKALPRLALAGMPVLSWLSLLMIAAMFLVMSRTPLGRAFYAVGGNPHAAIYTGIDVGRTRFFAYCLSGTLAGLSGYLWVSRYAVAYVDIAAGFELDIIAACVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVINISPFAQMAISGTVIIIAVAVNARAERRKGRVILRKAEAV

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Crispr_ID: NZ_CP029451_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029451_4

525581-525733

Orphan

Consensus_repeat	Method
ACCTGCTGTGCTAAGGCTGTCGCCTTATCGCATCATGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029451_4

>merge|NZ_CP029451|4|525581-525733|CRISPRCasFinder
ACCTGCTGTGCTAAGGCTGTCGCCTTATCGCATCATGTCCATGCCGCCCGTTCAGCGCGCCTGACGCGCTGAACTCTCCTTAGAGCATGGGCGAAGCTTTATGGACCTGCTGTGCTAAGGCTGTCGCCTTATCACATCATGTCCATGCCGCCC

>NZ_CP029451|4|4|525581-525733|CRISPRCasFinder
ACCTGCTGTGCTAAGGCTGTCGCCTTATCGCATCATGTCCATGCCGCCC	GTTCAGCGCGCCTGACGCGCTGAACTCTCCTTAGAGCATGGGCGAAGCTTTATGG
ACCTGCTGTGCTAAGGCTGTCGCCTTATCACATCATGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029451.1\|WP_037399544.1\|535315_535795_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029451.1\|WP_037399543.1\|535805_536255_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP029451.1\|WP_014327495.1\|534691_535312_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_037399583.1\|516877_518392_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP029451.1\|WP_037399549.1\|529534_530383_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP029451.1\|WP_037399555.1\|522606_525393_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP029451.1\|WP_037399553.1\|527975_528803_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|226725
NZ_CP029451.1\|WP_012706990.1\|527412_527709_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP029451.1\|WP_060563875.1\|536327_538169_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP029451.1\|WP_037399592.1\|514613_515249_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP029451.1\|WP_037399547.1\|530396_531380_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP029451.1\|WP_037399600.1\|531657_534567_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP029451.1\|WP_037399589.1\|515314_515686_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP029451.1\|WP_037399577.1\|519530_520226_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NZ_CP029451.1\|WP_014327482.1\|516203_516632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_037399574.1\|520339_521047_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|183298
NZ_CP029451.1\|WP_037399559.1\|521182_522409_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP029451.1\|WP_037399534.1\|538175_538733_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP029451.1\|WP_153451759.1\|513645_514389_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NZ_CP029451.1\|WP_037399580.1\|518391_519534_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413

Protein	Function_ID	Function_description	E-value
NZ_CP029451.1\|WP_037399543.1\|535805_536255_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	4.12988e-58
NZ_CP029451.1\|WP_037399534.1\|538175_538733_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	6.19197e-75
NZ_CP029451.1\|WP_037399544.1\|535315_535795_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.39152e-15
NZ_CP029451.1\|WP_037399583.1\|516877_518392_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	1.02513e-156
NZ_CP029451.1\|WP_037399549.1\|529534_530383_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.57195e-97
NZ_CP029451.1\|WP_037399555.1\|522606_525393_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.13688e-107
NZ_CP029451.1\|WP_060563875.1\|536327_538169_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.72852e-82
NZ_CP029451.1\|WP_012706990.1\|527412_527709_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.70473e-55
NZ_CP029451.1\|WP_037399592.1\|514613_515249_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	4.58146e-111
NZ_CP029451.1\|WP_037399547.1\|530396_531380_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.90075e-145
NZ_CP029451.1\|WP_037399600.1\|531657_534567_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP029451.1\|WP_037399589.1\|515314_515686_-\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	2.64547e-30
NZ_CP029451.1\|WP_037399577.1\|519530_520226_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	9.26034e-142
NZ_CP029451.1\|WP_037399553.1\|527975_528803_+\|sulfurtransferase	gnl\|CDD\|226725	COG4275, COG4275, Uncharacterized conserved protein [Function unknown].	3.34028e-79
NZ_CP029451.1\|WP_037399574.1\|520339_521047_+\|glutathione-S-transferase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	2.7198e-74
NZ_CP029451.1\|WP_037399559.1\|521182_522409_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	5.64709e-77
NZ_CP029451.1\|WP_153451759.1\|513645_514389_-\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.71279e-58
NZ_CP029451.1\|WP_037399580.1\|518391_519534_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	1.81128e-161

>NZ_CP029451.1|WP_037399555.1|522606_525393_+|EAL-domain-containing-protein
MFKILSCLVVEHDLRLVALAAMICALSSYGAVTLLQRARISKGRPRAIWLAAAGITSGFGIWATHFIAMLAYDPGVVLGYHTSLTTLSLVVAILLTTSALAIATYAKGRPAWLLGGLVLGAGVGCMHFLGMAALELPGFIRWDTTLVVASILAGVLFDMVAIFAINRGVSKAQLAATVAMTLGIVVLHFTAMGAVTIEVEFATGSQEGMIQPHFLAFVLAGTAFFLLSAVLIAAGFARHAEILAVASEKEFSRFVGSVKDYAIYMLDVDGRVASWNAGAEANKGYAAEEIVGKNFACFYSARDQAAGLPGRALRIAFEAGKYETEGWRYRKDGTRFWAHVVIDPIIGEDGGHAGFIKIAKDITKRKEDADRIAEVSKNLDIALENMTQGICLFDHADRLLVSNRRCLEIFELPESLAGMGLTFREVLDRMFARTCADPAVAEAKAEAAYSKHRLEIAGKGGGDFVEKLSNGRSILVKHRTLPDGGWVSTYEDITERLDSEEQISFLARHDSLTGLPNRLQFNSHLDEELDAAAWFSRKVAVVGIDLDKFKEVNDLHGHAAGDFVLVTIAQRMKEHLQEGEFVARFGGDEFAAVKRFEDLSEVHDFLRRIETCLHEEMRFGDFELKSGGSMGVAIYPQDAETADTLINNADLAMYRAKAALNQTICFYEVSMDEAARGRRALANDLWEAVEKKQLALHYQVQKSVTTGDVIGYEVLLRWNHPERGMVPPNEFIPLAEECGAILPIGEWVLREACREAAGWDRQYKIAVNLSPVQLANGDVVGLVHTILVETGLDPKRLELEITESTIIDDKERALSTLRDIKALGVTIAIDDFGTGYSSLETLRSFPFDKIKLDKSFMWEVEGSPQAKAIIRAILALGHSLQVPVLAEGVETQKQLDILQAEGCDEAQGYLLGRPAPIGSVIGVRTEAA
>NZ_CP029451.1|WP_037399559.1|521182_522409_+|FAD-dependent-oxidoreductase
MESVSGRLVVIGGGQAAFALVAKLRALQDTRPITVIAAEACLPYQRPPLSKKYLLREMSLDRLLYRPEAWYAEHGIDIRLSTTVTRVDRRASEVTLSDGSRLAYETLAFATGATPRRLPASIGGDLEGVYVVRDFRDADRLAEEMKPGRRVLVIGGGYIGLEAAAVARSCGLEVTVIEMADRILQRVASAATSAIVREIHRSHGVDIRERMGLHRLIGEGGQVTAAELSDGSVIPLDVVIVGIGVAANDALAHDAGLETSNGILVDSHGRTSDPAIFAIGDCAVLPWQGMRIRLESVQNAVDQAEAIAAILAGGSAPYDPNPWFWSDQYDVKLQIAGFGLGHDETLVRPGQREGSVSVWYFRQGKLIAVDAINDAKAYVTGKKLLEAGATPDPALLADPQVDLKSLLV
>NZ_CP029451.1|WP_037399574.1|520339_521047_+|glutathione-S-transferase
MADLSSFPITSRWPAKNPDIVQLYSLPTPNGVKISIALEELGLPYEAHRISFDTNEQKSPEFVSLNPNGRIPAIIDPNGPDGQPIGLFESGAILIYLAEKTGKLIPADAARRYETLCWVMFQMGGVGPMLGQFGHFFKFAADKVANNSYPVERYRDEAKRLLGVLEARLEGRQWLMGDEYTIADVATYPWVEGARKFYGGAEVLDYKSFPNVMAWVERGLARPAAQRGMEIPRKE
>NZ_CP029451.1|WP_037399577.1|519530_520226_+|ATP-phosphoribosyltransferase
MTITIALPSKGRMKDDASAIFERAGMKIVAVGNDRSYRGRVEGWDDVEVAFLSASEISREVGSGAVDFGVTGEDLVREGIADADARVEFAARLGFGHADVVVAVPEVWYDVDTMADLGDVAADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDITSTGSTLKANHLKILLDGVILRSEACLVRARKAAHDGDPTIDRIISSVRSIL
>NZ_CP029451.1|WP_037399580.1|518391_519534_+|ATP-phosphoribosyltransferase-regulatory-subunit
MPLINLPAFAGDLLADFERLKTLRVDTPVIQPAEPFLDMAGEDLRRRIFMTESETGDSLCLRPEFTIPVCLRHIETATGTPQRYAYLGEVFRQRREGSSEFYQAGIEDLGDTDTAGADARAIGDAMLVLSNRLGERRLKVTLGDQSVFEAVIAACGLPSGWQKRLIHAFGDQKLLQKLLGELADPKSPGVFGYEVERLAILGILDDEERLVAHLTETMEATGYSTNASRSPREIARRLKEKMELATTRLDKAALAVMREFLAFDLPLSEAPAALHAFAKKSKLKLDDALPLFDARVAALAKAGADSDLIRYRAAFGRPLDYYTGLVFEIEAEGAPAVLAGGGRFDRLLTLLGAREHIPAVGFSLWLDRIERAIAAAGALK
>NZ_CP029451.1|WP_037399583.1|516877_518392_+|histidine--tRNA-ligase
MNDKPKKPQKLKARLPRGFVDRSAADIRAVDEMIAKIREVYERYGFDPVETPLFEYTDALGKFLPDSDRPNEGVFSLTDDDEQWMSLRYDLTAPLARHVAENFNEIQLPYRTYRAGYVFRNEKPGPGRFRQFMQFDADTVGAAGVQADAEMCMMMADTMEALGIARGDYVIRVNNRKVLDGVLEAIGLGGDDRANARLTVLRAIDKLDKFGPEGVRLLLGEGRKDESGDFTKGAGLNEEQIRKILFFVGISDYAKSAGELAELVAGTGKGTEGVQELNTIRSLVLSAGYEADRIKIDPSVVRGLEYYTGPVFEAELQFSVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSIGVSRLMTALKNLGKLGVEEVVAPVVVCVMDRDIDSMGRYQRFVQQLRHAGIRAEMYQGNKKNFGDQLKYADRRGSPIAIIQGGDERASGVVQIKDLIEGKRLSGEIEDNVAWREARVAQVSVPEGDLVAKVRAILAEQAEDRKRAG
>NZ_CP029451.1|WP_014327482.1|516203_516632_-|hypothetical-protein
MLTVMTPGAAAIRPLNPETHGAWTRVLAKAGYMIDPWHCDVDSGAFVVGLRTLSLLGLRQNPCGIIDLVRAYDQEDRATILCILEQATATSSSFCFSAMVRRPSGSSYQLCCIGNSTLGEHGAGGSLQGVFAVPRSGSALPA
>NZ_CP029451.1|WP_037399589.1|515314_515686_-|DUF305-domain-containing-protein
MSLKRILTALIIAASVGSASFSQESGHQGMNHNSTAAESAPSSRAFAEANAKMHKDMDIVFTGNADVDFVRGMIAHHQGAIDMAKVELEYGKDEAIRKLAENIIKAQEAEITMMKEWLAGHGG
>NZ_CP029451.1|WP_037399592.1|514613_515249_+|DNA-3-methyladenine-glycosylase-I
MSARGLIMGDDGLQRCAWHGNLEDYRRYHDEEWGRPVTDDRRLFEKICLEGFQSGLSWLTILRKREAFRSAFAGFDFDAVAEFGDADIERCLADPGIVRHRGKIVSTINNARRAQELRSEFGSLAAYFWAHEPDGSERPKVVDYETLIANPTTPASVRISKDLKKRGWTFVGPTTVYAFMQAMGLVNDHLEGCVCRDGIEEMRRQFARPTA
>NZ_CP029451.1|WP_153451759.1|513645_514389_-|L,D-transpeptidase
MKKFLLLATCLVCTFPAGAGARERYQNRPPVIVSPDLAAPWVMQLTGEGVRPAVYRPQVPAATRKQVERRQMKRRLETAAVQPAAARAQRPVKSQFDPQFLPQMVGYETNEKPGTIVIDTNNRFLYLVTGDGQARRYGVGVGKPGFEWAGAHKITRKSEWPSWTPPGEMIAREAAKGHYLPARMDGGPQNPLGARAMYLGSTLYRIHGTNAPWTIGYGVSSGCIRMRNEDVVDLYERVKVGTKVIVI
>NZ_CP029451.1|WP_012706990.1|527412_527709_-|co-chaperone-GroES
MASTNFRPLHDRVVVRRVESEEKTKGGIIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRVLFGKWSGTEVKINGEDLLIMKEADIMGIIG
>NZ_CP029451.1|WP_037399553.1|527975_528803_+|sulfurtransferase
MASFNSISPEKLARLVGTPKAPVLIDVRDEDDFTADPYLVPASFHRTHSDAPQWADEYNGQWVVVLCKHGGKLSEGVAAWLRLAGAAAEILEGGIEAWREAGLPLVPVASLPNADPSGGSVWVTRSRPKIDRIACPWLIRRFVDPRARFLYVTAAEVEAVGERFGATPFDIEGVFWSHRGDDCTFDTMIKEFRLGFPALEHVARIVRGADTDRHDLEPQAAGLLAVSLGLSRMYADDLEQLEAGMTLYDALYRWARDATQEKHDWVSHGGKGKRA
>NZ_CP029451.1|WP_037399549.1|529534_530383_+|TIGR01459-family-HAD-type-hydrolase
MAVRINSYREIASRYDVVLCDVWGVLHNGVQAFASACEALAEARAQGVTVVLITNSPRPHPSVKVQIRGLGVPDEAYDRIVTSGDVTRALIASAEKRIYFIGADRDLPLLEGLGTEIVSAEEAETIVCAGFYDDETETPEHYRATLTGLAKRKIPFICANPDLVVERGHRLIPCAGAIAKLYEELGGEARIAGKPYKAIYRAALSEAKAVRSAFDLARVVAVGDGMPTDVKGAQDAGFDLLYISAGIHAQEYMHESRTDEAKLAAFLKKEGATPKWWMPRLA
>NZ_CP029451.1|WP_037399547.1|530396_531380_+|bifunctional-riboflavin-kinase/FAD-synthetase
MTVFHRNETRDPLPERLHGGVIAIGNFDGVHRGHQSVLNRALDEARGRGVPALVLTFEPHPRTVFRPDQPVFRLTPAPLKARILEGMGFGAVIEYPFDRTFSQLSASDFIHRILREWLHASHVVTGFDFHFGKGREGGPAFLMAAGAQEGFGVTLVDAFRDENASVISSSFIRSLLAEGDVAHAAGLLGYRYTVEAEVIGGKKLGRTLGYPTANMRLPQEAELRNGIYAVRFRRADGSLYDGVASFGRRPTVASDGEALLETFVFDFAGDLYGEVCGVSFFGHLRDELKFDGLEPLMVQMREDEQEARALLSGVQPLSEIDRQVNFA
>NZ_CP029451.1|WP_037399600.1|531657_534567_+|isoleucine--tRNA-ligase
MTETAEKIDYSSTLYLPQTEFPMRAGLPQKEPETVARWQKMELYKKLRASAAGREKFVLHDGPPYANGNIHIGHALNKILKDVINRSFQMRGFDANYVPGWDCHGLPIEWKIEEKYREKGRNKDDVPVNEFRRECREFASGWIEVQTEEFKRLGIEGDFEKPYTTMNFHAEARIAGELIKIAKAGQLYRGSKPVMWSVVERTALAEAEVEYADVESDMIWVKFPVTEGPDALAGAFVVIWTTTPWTIPGNRAVAYSSRYAYGLYEVATAENDFGPQPGEKLIFAKRLAEESAAKAKVTFNFVRDIEAGELGAITCAHPLHGLGGGYAFHVPLLDGDHVTDDAGTGFVHTAPGHGREDFDAWMDSARALEARGISSAIPFTVDDAGYFTADAPGFGPDAEGGAGRVIDDKGKKGDANDRVIKALIARHALFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKDFGDGTTLRSRALNAIDETRFVPGAGQNRLRAMIEQRPDWVLSRQRAWGVPIAIFADDDGRILVDEEVNARILEAFEKEGADAWFAEGAKERFLGSDHDHARWHQVMDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCATRGRAPYNAVVTHGFTMDEKGEKMSKSKGNTVTPQEVMKDAGADILRLWVMTTDYWEDQRLGKTIIQTNIDAYRKLRNTVRWMLGTLAHDKGETVAVSDMPELEQLMLHRLAELDRLVREGYDAFDFKRIARALIDFSNVELSAFYFDIRKDALYCDAPSSLRRRAALHVIRTLFDCLVTWLAPMLPFTAEEAWLSRNPEAVSVHVEQFPAVPAEWRNDALAEKWRKIREVRKVVTGALEIERKDKRIGSSLEAAPIVHIADPDLRAALDGQDFAEICITSAIEIDGAEGPAGAFTLPEVAKVGVVPKLAEGRKCARSWRITTDIGSDPLYPDVSARDAAALRELGFKP
>NZ_CP029451.1|WP_014327495.1|534691_535312_+|hypothetical-protein
MEMTRELRVFAGIAAVVAGSLVLSGCIGGPTYGTDKSAGEQLVDDLGSAISLAPPKRDPVKYQPRAGLVLPPQGEQAALVQPQQSLANREANPAWVESPEEVRDRLREEADANKNNPNYVSPLAKASANGRRLSAKEQQAAYREARKIEMGAYSDKRRYLSDPPLEYRRLPEGAETDLGETEKDKERRRKKAAQVANSGSKWYWPF
>NZ_CP029451.1|WP_037399544.1|535315_535795_+|GNAT-family-N-acetyltransferase
MAINIRDAVPDDAATILRFITELAIYEKAEQEVEATIELLTASLFGPGRVSRAVICEVDGAPAGFAIWFYNYSTWQARKGLYLEDLYVTPEHRGSGAGKMLLKHLARIAIVEGCGRFEWSVLDWNEPAIRVYEAIGAEPLSEWTRYRLVGKELEALAAS
>NZ_CP029451.1|WP_037399543.1|535805_536255_-|nucleoside-deaminase
MAETTRYMDAALDEARKAAARGEVPIGAVVVLDGEVVAAAGNRTRELRDITAHAEIEAIRQAASAVGDERLSGADLYVTLEPCTMCAAAISFARIRRLYYGADDPKGGAVENGVRFYGSPTCHHVPDVYSGLAEREAADLLREFFAARR
>NZ_CP029451.1|WP_060563875.1|536327_538169_+|pseudouridine-synthase
MTFKDKSTGPGKGKGRKGNFPSGEKKANAARPGSGAAPKADAGLDEPQRISKILSRAGVASRRDVERMIMEGRVKLNGVVLDTPVVNATLADSIEVDGHPIRGIERTRLWLYHKPAGLVTTNSDPEGRSTVFDNLPDELPRVLSVGRLDINTEGLLLLTNDGGLARALELPSTGWLRRYRVRAHGEIDQEALDRLKEGIAVDGVLYGAIEATLDRVQGSNVWITMGLREGKNREIKNVLGALGLDVNRLIRISYGPFQLGELPEGHVQEIRGRTLREQLGPRLIAESKANFDAPLYNDQPAAPEREDHNEDAPEWGKERSARREKPEDKRERALARLDTQRDDSRSRDRRERPREKFEDRPARPPAKRSRTANVWMAPGARPVAEKKPKTAEEETSSKPARRERPEGAPKTKRYGRAKDGSATRTSAKFDPDRKAGAAKGAARPDRAPRPSVKRTDEDGDWISASEPVRRKDDARDGGFERRRPFDSGERKSRDHGDRPPRREGSERPRGERPARAAGDSRAFSEKPRTSRSKDDRPQGREGGDRPFGDRPRGKSAGGKPAGGKSFGQRSEGPRGGGKSGGGKPGGGRPGGGKPGGHKTGGRPGGGKPRGKGK
>NZ_CP029451.1|WP_037399534.1|538175_538733_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILSHSYPEALDGARMLDLFAGTGAVGLEALSRGCRQALFVEQGVEGRGLIRVNIEALGLQARAKIFRRDAVDLGTVGTMEPFHLVFADPPYGKGLGERALESAAAGGWLVPGALVVLEESADIRPQLSGAFEPLDVRAFGDTQIHFYRFLG

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Crispr_ID: NZ_CP029451_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029451_5

1014279-1014388

Orphan

Consensus_repeat	Method
GCGGCGCGGACGGTCGTCACGATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029451_5

>merge|NZ_CP029451|5|1014279-1014388|CRISPRCasFinder
GCGGCGCGGACGGTCGTCACGATCGCCACGGTCCGGGCGCGGACCACGGTCACCGAAACCACCACGATCCGGACGGTCGCCGTCGCGGCGCGGACGGTCGTCACGGTCGC

>NZ_CP029451|5|5|1014279-1014388|CRISPRCasFinder
GCGGCGCGGACGGTCGTCACGATCGC	CACGGTCCGGGCGCGGACCACGGTCACCGAAACCACCACGATCCGGACGGTCGCCGTC
GCGGCGCGGACGGTCGTCACGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029451.1\|WP_014327833.1\|1023150_1023810_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP029451.1\|WP_014327825.1\|1012838_1013792_-\|membrane-protein	unknown	unknown	unknown
NZ_CP029451.1\|WP_014327827.1\|1015443_1016487_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP029451.1\|WP_014327821.1\|1009129_1009792_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP029451.1\|WP_014327828.1\|1016817_1017762_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP029451.1\|WP_014327831.1\|1020867_1022055_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|224475
NZ_CP029451.1\|WP_012707461.1\|1013983_1014232_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP029451.1\|WP_014327819.1\|1006884_1008024_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NZ_CP029451.1\|WP_037431273.1\|1023939_1024764_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP029451.1\|WP_014327832.1\|1022259_1023147_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|224477
NZ_CP029451.1\|WP_037391159.1\|1019316_1020582_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|235987
NZ_CP029451.1\|WP_003531676.1\|1018864_1019101_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP029451.1\|WP_014327822.1\|1009788_1010094_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226916
NZ_CP029451.1\|WP_037391162.1\|1002978_1004469_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236384
NZ_CP029451.1\|WP_014327829.1\|1017788_1018526_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|171820
NZ_CP029451.1\|WP_109982137.1\|1002224_1002941_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
NZ_CP029451.1\|WP_014327826.1\|1015075_1015408_+\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP029451.1\|WP_014327813.1\|1000580_1001279_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NZ_CP029451.1\|WP_014327823.1\|1010300_1011800_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_CP029451.1\|WP_014327824.1\|1012227_1012803_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659

Protein	Function_ID	Function_description	E-value
NZ_CP029451.1\|WP_014327833.1\|1023150_1023810_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.19925e-115
NZ_CP029451.1\|WP_037431273.1\|1023939_1024764_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.05731e-131
NZ_CP029451.1\|WP_014327819.1\|1006884_1008024_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	6.26298e-151
NZ_CP029451.1\|WP_014327821.1\|1009129_1009792_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.16636e-58
NZ_CP029451.1\|WP_014327828.1\|1016817_1017762_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.9533e-133
NZ_CP029451.1\|WP_014327831.1\|1020867_1022055_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	7.10586e-147
NZ_CP029451.1\|WP_012707461.1\|1013983_1014232_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.52598e-37
NZ_CP029451.1\|WP_014327827.1\|1015443_1016487_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	3.13474e-171
NZ_CP029451.1\|WP_014327832.1\|1022259_1023147_+\|YicC-family-protein	gnl\|CDD\|224477	COG1561, COG1561, Uncharacterized stress-induced protein [Function unknown].	5.43405e-112
NZ_CP029451.1\|WP_037391159.1\|1019316_1020582_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0
NZ_CP029451.1\|WP_003531676.1\|1018864_1019101_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	3.25258e-33
NZ_CP029451.1\|WP_014327822.1\|1009788_1010094_+\|membrane-protein	gnl\|CDD\|226916	COG4541, COG4541, Predicted membrane protein [Function unknown].	1.37585e-16
NZ_CP029451.1\|WP_037391162.1\|1002978_1004469_-\|amidophosphoribosyltransferase	gnl\|CDD\|236384	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.	0
NZ_CP029451.1\|WP_014327829.1\|1017788_1018526_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|171820	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed.	3.47459e-169
NZ_CP029451.1\|WP_109982137.1\|1002224_1002941_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	9.94498e-65
NZ_CP029451.1\|WP_014327826.1\|1015075_1015408_+\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	1.83116e-22
NZ_CP029451.1\|WP_014327813.1\|1000580_1001279_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	1.69871e-119
NZ_CP029451.1\|WP_014327823.1\|1010300_1011800_-\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_CP029451.1\|WP_014327824.1\|1012227_1012803_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.2943e-64

>NZ_CP029451.1|WP_012707461.1|1013983_1014232_-|30S-ribosomal-protein-S18
MAEVSSAPVRRPFHRRRKTCPFSGANAPRIDYKDVRLLQRYISERGKIVPSRITAVSQKKQRELAQAIKRARFLGLLPYVVS
>NZ_CP029451.1|WP_014327825.1|1012838_1013792_-|membrane-protein
MQNWNRTSLITGALAGIAAALLSMGANTQSSLAIVLYAASALPILIAGLGWGNAAAVTAIIAAGVTAASLVSSYFALLILVVTLVPAGWLSHLANLARPAPELGGPEGALAWYPLSDILGHLAGLVTLGMIIVATIVGYDSSVSDLMVDMVVEAVKAQEPLYNPDAAAIAQLKSMFTLALPLVQGAIWVVMLFAAYYIATRIVQMSGRSVRPREDIPSSLRMHRNAIFVFLAGLILTFLGGAPAAIGALVCGTFGAGFLLSGFASFHFRTRGKSWRLPVLWIAYLSVLVFTIPAVFFLLSGLTDTRRTIAVTPAGKS
>NZ_CP029451.1|WP_014327824.1|1012227_1012803_-|50S-ribosomal-protein-L9
MEVILLERIAKLGQMGETVKVRDGFARNYLLPLGKALRANAANKARFDSERATLEARNLERKSEAQTVAEKLDGKSFVIVRTAGETGQLYGSVAARDIVDVLAAEGFNINRNQVNLNQPIKSIGVHKVTLHLHAEVDVVVELNVARSAEEAERQAKGESLTSAEAIYGVDEDALKPEDFFNPEAEFAAEEE
>NZ_CP029451.1|WP_014327823.1|1010300_1011800_-|replicative-DNA-helicase
MNDAARKLAPLPKDQADQHYREAPNNLEAEQALLGAILVNNDAFYRVSDFLKPVHLYEPLHRKIFEVAGEIIRMGKTANPVTVKTFLKADDKVGDLTVAQYLARLAAEAVSIINAEDYGRAIYDLALRRSLITIGEDMVNIAFDAPLDMPPQSQIEDAERRLFELAETGRYDGGFQSFNDAVALAIDMAGQAFERDGHLSGISTGIHSLDGKMGGLQRSDLIILAGRPGMGKTSLATNIAYNIAASYEPEVQPDGSFKARNGGVVGFYSLEMSSEQLATRIISEQTEVSSSKIRRGDISEADFEKLVACSQMMQKVPLYIDQTGGISIAQLAARARRLKRQRGLDVLVVDYVQLMSGSKKSGENRVQEITEITTGLKALGKELNVPIIALSQLSRAVESREDKRPQLSDLRESGSIEQDADVVLFVFREEYYVKNMEPRDELDPKYEEWKMQMERVKGTADVIIAKQRHGPTGTVKLAFQSEFTRFSDLADPSFTQYEH
>NZ_CP029451.1|WP_014327822.1|1009788_1010094_+|membrane-protein
MTLDLDTFLAIVAMAVATVLTRMAGLLVIRFVAIGPQQKRALEAIPPAVLMAVIAPTALATGPAETLATVATALAAMRLPLLAAVAIGVFVVAVARALIGA
>NZ_CP029451.1|WP_014327821.1|1009129_1009792_+|AzlC-family-ABC-transporter-permease
MRAMAPLTVAVIPIGLVFGAVAASKGLSSFEATLMSVLVFAGGSQFVAMDIWTHPASWGALAFSALLVNIRHVLMSASIGTKMPAFSGPAKYAAMLLLADEIWAMAEVRAGENRLTPAWYAGLAVPFYCVWVLASLAGAAAGAFLGDPEAIGLDFAFPAVFTVLVMGFWKGRDTGAVLAASATAAVLAHQFLPGVWYIAAGAAAGVAATLVTNRHQEACA
>NZ_CP029451.1|WP_014327819.1|1006884_1008024_-|alanine-racemase
MHSPEFLAASNRLTIDLTALADNWRAMNERSGKARAAAVLKANAYGIGVAHAAPTLYAAGARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEELFFANDLVPIINSEEQLAVFMAALSERGDHPCVLHVDTGMNRLGLSVEEAIALAHDPARPASFSPVLVMSHLACGDDPRHPMNLYQLQRFREVTAAFEGVPASLANSGGVFLGEDYHFDLTRPGIAVYGGEAVNGALNPMKPVVTAEARILQLRTIPSGGTASYGASARFARDSRIATVAIGYADGYHRSVSGGGVTLRQATPSGAYGFLHGKKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGPNVAIDEVARAGGTIGYELLTSLGQRYCRTYVGGV
>NZ_CP029451.1|WP_037391162.1|1002978_1004469_-|amidophosphoribosyltransferase
MTDLRSSEIRDELDGDTLHEECGVFGILGHPDAATLTALGLHALQHRGQEAAGIVTFDGKQFYTEKRMGLVGDHYTDPATLAKLPGFVSIGHTRYSTTGEVALRNVQPLFAELEVGGIAIAHNGNFTNGLTLRRQLIADGAICQSTSDTEVVLHLIARSKQASSSDRFIDAIRQMEGGYSMLAMTRTKLIAARDPIGIRPLVMGELDGKPIFCSETCALDIIGAKYIRDVENGEVVICEIQADGSVSIDARKPESPRPERLCLFEYVYFARPDSVVGGRSVYVARKNMGVNLAKESPVEADVVVPVPDGGTPAALGYAQQSGIPFEYGIIRNHYVGRTFIEPTQQIRAFGVKLKHSANRAMIAGKRVVLVDDSIVRGTTSVKIVQMIREAGAREVHIRVASPMIFHPDFYGIDTPDRDKLLANQHADLASMCRFIGADSLEFLTIDGLYQAVGGAPRDPQAPQFTDHYFTGDYPTRLLDQEGASNVRKLSVLASNG
>NZ_CP029451.1|WP_109982137.1|1002224_1002941_-|SDR-family-NAD(P)-dependent-oxidoreductase
MAVVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAAGGSATLVPFDLADMAAIDKLGGAINERWGKLDILVANAGVLGTISPIGHVEAKVFEKVMSINVTATWRLIRSLEPLLVKSDAGRALILSSSAAHKCKPFWGPYSASKAAVEALARTWAYETQRLPLRILSVDPGATRTAMRAQAVPGEDPATVPHPSEVAAALMPLLAPEQTETGKLFIVREKKIVDYRMPE
>NZ_CP029451.1|WP_014327813.1|1000580_1001279_+|phosphatidylserine-decarboxylase
MSLVETVRNTLVPVHKEGYRFIAIFFVVSLILGFLWEPLMWIGFLLTAWCAYFFRDPERMTPIDEDLVISPADGRVSSIATVTPPEELGLGSEPMLRISVFMNVFDCHVNRAPMSGTVRRIAYRAGSFLNAELDKASHDNERNGLVVETSHGAIGVVQIAGLVARRILCWTTENASLEGGERFGLIRFGSRVDVFLPEGVQPRVSVGQKAIAGETVIAEFGSSKGPVISRRA
>NZ_CP029451.1|WP_014327826.1|1015075_1015408_+|four-helix-bundle-copper-binding-protein
MHHIDPKMQECIENCLACYRACLSTAMNHCLEAGGKHTEPDHFRLMMACAEICRTSAHFMLIGTPHHRHVCGECAEICAECAADCERIGGMAECVDACQRCAESCRQMAA
>NZ_CP029451.1|WP_014327827.1|1015443_1016487_-|NADP-dependent-oxidoreductase
MRYNTLGRTGIKVSEICLGTMTWGSQNTPIEAHGQLDYAFECGVNFIDTAELYPTTPLSAETYGNTERIIGDWLAGRRRRDDVVLATKVAGPGRPYIRNGGPMTPEGIAEALDASLTRLKTDYVDLYQLHWPNRGHYHFRNAWSYDPSRQDKAHVAADLRAILDKLGDLVKAGKIRAIGLSNDTAWGAMKMLDLSEKHGLPRVATVQNEYNLLYRAYDLDLAELSHHEDVGLLAYSPLAAGLLTGKYLDGARPAGSRLSINGDLGGRFTPHQEPAVAAYVALAREHGLDPAQMALAFCLTRPFMASVIIGATSIKQLKTDISAADIALSQDVLNGIRRLHRLYPAPI
>NZ_CP029451.1|WP_014327828.1|1016817_1017762_+|ACP-S-malonyltransferase
MSIAFTFPGQGSQAVGMGKDLADAFPEAAAVFAEVDDALGEKLSDTIWNGPEETLILTANAQPALMAVSIAVIRVLEARGLDLGSKVSFVAGHSLGEYSALCAAGTFSLADTARLLGIRGNAMQAAVPVGKGAMAAIIGLEHDDVEAVCREASSLGACQIANDNGGGQLVISGEKQAVEKAAALATEKGAKRALMLPVSAPFHSSLMAPAAEAMREALAKVEKRDPVVPVVANVLAAPVSDAGEVARLLVEQVTGQVRWRETVQWFAANDVTTLYEIGSGKVLTGLARRIDKTVNGIAVNTPADIDAALAALLA
>NZ_CP029451.1|WP_014327829.1|1017788_1018526_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MFDLSGRKALITGASGGIGEEIARMLHAQGAIVGLHGTRVEKLEALANSLGERVQIFPANLSDRAEVKALGEKAETELGGVDILVNNAGITKDGLFVRMSDEDWDNVLEVNLTAVFRLTRELTHPMMRRRFGRIVNITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEGIMAAIPMRRMGSGAEVASAVAYLASNEAGYVTGQTIHVNGGMAMI
>NZ_CP029451.1|WP_003531676.1|1018864_1019101_+|acyl-carrier-protein
MSDIAERVKKIVIDHLGVDAEKVSEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAADSILTVGDAVKFIEKAQA
>NZ_CP029451.1|WP_037391159.1|1019316_1020582_+|beta-ketoacyl-ACP-synthase-II
MRRVVITGTGMVSPLGCGTEVSWSRLLAGGNAARKVTEFEVEDLPAKIACRIPFGDGSDGTFHADDWMEPKEQRKVDPFITYAMAAADMALADAGWKPESDEDQIATGVLIGSGIGGLEGIVEGGYTLRDKGPRRLSPFFIPGRLINLASGQVSIRHKLRGPNHSVVTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDDPQRASRPYDADRDGFVMGEGAGIVILEELEHAKARGAKIYAEVVGYGLSGDAFHITAPSEDGDGAYRCMQMALKRAGLTAADVDYINAHGTSTMADTIELGAVERLVGDSASRISMSSTKSAIGHLLGAAGAVEAIFSALAIRDNVAPPTLNLDNPSVETKIDLVPHVARKREINVALSNSFGFGGTNASLVLRRYKAD
>NZ_CP029451.1|WP_014327831.1|1020867_1022055_+|endolytic-transglycosylase-MltG
MSDSNENSAAQFGRNETGSNGPIIPKSANEALRPERVPEPPKRSRKARSQVVIFLNFLMTVVVFVALAAAGAVYYAMHAYEKPGPLEANQNFIVRSGAGIIEIAEGLERNNIITDSRVFRFVSEAYLDNETLKAGEYEIKAHASMQEIMELLKSGKSILYAVSLPEGLTVKQMFRKLSDDPVLVGDLPADLPAEGTLKPDTYKFTRGTKRAEIVQQMVSAQKALVEQIWEKRDPELPVTSVEEFVTLASIVEKETGRADERPRVASVFINRLEKGMRLQSDPTIIYGIFGGEGKPADRAILKSDLEKETPYNTYLIKGLPPTPIANPGRAALEAVANPSRTPELYFVADGTGGHVFAATLDEHNANVRRWRKLEAEKAAEAAKAAADAATAPDAQ
>NZ_CP029451.1|WP_014327832.1|1022259_1023147_+|YicC-family-protein
MPLQSMTGFARREGSSGRYRWAWELRSVNGKGLDVRLRLPQGLERFEPECRRLAPQYFSRGNLQIALSVSGGETAVEAVINRGALDAVLKLREQLGDLVDPTPLRFDTLLSLRGIIDLREPEESETERSARDADIVKGLELSLADLMAMRKDEGTALEKVLLAQVERIEELTATVENDPSRSPSAIAARLAQQVALIMDNASSIDRERLHAEVALLATKADLREEVDRLRSHIAAARELLTKGGPVGRKLDFLAQEFNRESNTICSKSNAAAVSAAGIELKVVIDQFREQVQNLE
>NZ_CP029451.1|WP_014327833.1|1023150_1023810_+|guanylate-kinase
MKSAAASPIKIARRGLMLVISSPSGAGKSTIARNLLRDDPELSISVSVTTRQRRHSEIEGQHYYFKTVREFDALRATDSLLEWAEVHGNFYGTPRDAVEAAMAEGRDMLFDIDWQGAQQLQEKMAGDVVSIFILPPSMAELQSRLHRRAEDTEEVIATRLANSRAEIEHWREYDYIVVNDDLDRAFSSVRSIIEAERLRRDRRPGLFEFVNGLLTENPF
>NZ_CP029451.1|WP_037431273.1|1023939_1024764_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLDDITVIEVGPGPGGLTRAILALGAKKVVAIERDPRCLPALAEISGHYPGRLDVVEGDALKVDFESLGEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMFQREVALRIVAGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVVHLEPTDNPIPCAVSALEKVTQAAFGQRRKMLRQSLKPIGGEALLGKAGIDPQRRAETLTVEEFCRLANCL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029451_2	2.1\|287404\|23\|NZ_CP029451\|CRISPRCasFinder	287404-287426	23	NZ_CP029451.1	2998610-2998632	2	0.913

1. spacer 2.1|287404|23|NZ_CP029451|CRISPRCasFinder matches to position: 2998610-2998632, mismatch: 2, identity: 0.913

gcgcctcggcaatttcggggctt	CRISPR spacer
gcgcatcggcaatttcgggactt	Protospacer
**** **************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	MT521995	Gordonia phage Moosehead, complete genome	9997-10019	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	MN585966	Gordonia phage Faith5x5, complete genome	9994-10016	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	402556-402578	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP031959	Phaeobacter sp. LSS9 plasmid unnamed3, complete sequence	64143-64165	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	859842-859864	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP031954	Phaeobacter inhibens strain 2.10 plasmid unnamed2, complete sequence	58080-58102	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NC_018423	Phaeobacter inhibens 2.10 plasmid pPGA2_95, complete sequence	57966-57988	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	473800-473822	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP019310	Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-3, complete sequence	23362-23384	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010684	Phaeobacter piscinae strain P14 plasmid pP14_c, complete sequence	28404-28426	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010719	Phaeobacter piscinae strain P18 plasmid pP18_d, complete sequence	28441-28463	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	490320-490342	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010808	Phaeobacter piscinae strain P23 plasmid pP23_c, complete sequence	28192-28214	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010659	Phaeobacter piscinae strain P71 plasmid pP71_c, complete sequence	28404-28426	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010731	Phaeobacter inhibens strain P88 plasmid pP88_f, complete sequence	37924-37946	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010772	Phaeobacter piscinae strain P13 plasmid pP13_e, complete sequence	28441-28463	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010653	Phaeobacter inhibens strain P54 plasmid pP54_c, complete sequence	37904-37926	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010646	Phaeobacter piscinae strain P36 plasmid pP36_c, complete sequence	28192-28214	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP010692	Phaeobacter piscinae strain P42 plasmid pP42_c, complete sequence	28192-28214	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1931263-1931285	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	396116-396138	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	90227-90249	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1176483-1176505	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	68070-68092	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	611200-611222	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	50819-50841	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	54315-54337	2	0.913
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	186136-186158	2	0.913
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1244537-1244559	3	0.87
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP020613	Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence	41543-41565	3	0.87
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1469400-1469422	3	0.87
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP034813	Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence	167131-167153	3	0.87
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	74702-74724	3	0.87
NZ_CP029451_1	1.1\|287236\|23\|NZ_CP029451\|CRISPRCasFinder	287236-287258	23	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	25997-26019	3	0.87
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	556-578	3	0.87
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1746941-1746963	3	0.87
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	385461-385483	3	0.87
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1379330-1379352	3	0.87
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP053444	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eB, complete sequence	30662-30684	4	0.826
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP022670	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence	109725-109747	4	0.826
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	54005-54027	4	0.826
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	54009-54031	4	0.826
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	53986-54008	4	0.826
NZ_CP029451_3	3.1\|287641\|23\|NZ_CP029451\|CRISPRCasFinder	287641-287663	23	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	53985-54007	4	0.826

1. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to MT521995 (Gordonia phage Moosehead, complete genome) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccatgccgtcgccgccctc	Protospacer
******.***************

2. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to MN585966 (Gordonia phage Faith5x5, complete genome) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccatgccgtcgccgccctc	Protospacer
******.***************

3. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccgtgccgtcgccgccggg	Protospacer
********************  *

4. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP031959 (Phaeobacter sp. LSS9 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

5. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccagggccgtcgccgccctg	Protospacer
***** * ***************

6. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP031954 (Phaeobacter inhibens strain 2.10 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

7. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NC_018423 (Phaeobacter inhibens 2.10 plasmid pPGA2_95, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

8. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gctccggtgccgtcgccgccctg	Protospacer
** ** *****************

9. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP019310 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-3, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

10. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010684 (Phaeobacter piscinae strain P14 plasmid pP14_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

11. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010719 (Phaeobacter piscinae strain P18 plasmid pP18_d, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

12. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccgtaccgccgccgccctg	Protospacer
********.***.**********

13. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010808 (Phaeobacter piscinae strain P23 plasmid pP23_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

14. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010659 (Phaeobacter piscinae strain P71 plasmid pP71_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

15. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010731 (Phaeobacter inhibens strain P88 plasmid pP88_f, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

16. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010772 (Phaeobacter piscinae strain P13 plasmid pP13_e, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

17. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010653 (Phaeobacter inhibens strain P54 plasmid pP54_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

18. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010646 (Phaeobacter piscinae strain P36 plasmid pP36_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

19. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP010692 (Phaeobacter piscinae strain P42 plasmid pP42_c, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcaccggtgccgtcgccgcgctg	Protospacer
***** ************* ***

20. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.913

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccttgccgccgccgccctg	Protospacer
****** *****.**********

21. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
aaacggcggccgtcgccagcctt	Protospacer
* ********************

22. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggtggccgtcgccagcctg	Protospacer
.*****.****************

23. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggtggccgtcgccagcctg	Protospacer
.*****.****************

24. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
acatggcggccgtcgtcagcctg	Protospacer
***.***********.*******

25. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
acacggcggccgtcaccaccctg	Protospacer
**************.*** ****

26. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
acacggcggccgtcgatagcctg	Protospacer
*************** .******

27. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
acatggcggccgtcgccagcccg	Protospacer
***.*****************.*

28. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 2, identity: 0.913

acacggcggccgtcgccagcctg	CRISPR spacer
acacggctgccgtcaccagcctg	Protospacer
******* ******.********

29. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
gtgtccgtgccgtcgccgccctg	Protospacer
*...*******************

30. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP020613 (Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
cgacccgtgccgacgccgccctg	Protospacer
  ********** **********

31. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
aaacccgcgccgtcgccgccctg	Protospacer
. *****.***************

32. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
gcacccgcgccgtcgccgcccgc	Protospacer
*******.*************

33. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
gtgtccgtgccgtcgccgccctg	Protospacer
*...*******************

34. spacer 1.1|287236|23|NZ_CP029451|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 3, identity: 0.87

gcacccgtgccgtcgccgccctg	CRISPR spacer
ccgaccgtgccgtcgccgccctg	Protospacer
 *. *******************

35. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 3, identity: 0.87

acacggcggccgtcgccagcctg	CRISPR spacer
ggacggcggccgacgccagcctg	Protospacer
. ********** **********

36. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 3, identity: 0.87

acacggcggccgtcgccagcctg	CRISPR spacer
ggacggcggccgacgccagcctg	Protospacer
. ********** **********

37. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.87

acacggcggccgtcgccagcctg	CRISPR spacer
ggacggcggccgacgccagcctg	Protospacer
. ********** **********

38. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 3, identity: 0.87

acacggcggccgtcgccagcctg	CRISPR spacer
ttacggcggccgtcgcaagcctg	Protospacer
 .************** ******

39. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP053444 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eB, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

40. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP022670 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

41. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

42. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

43. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

44. spacer 3.1|287641|23|NZ_CP029451|CRISPRCasFinder matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 4, identity: 0.826

acacggcggccgtcgccagcctg	CRISPR spacer
gcacggcggccgtcgccagctca	Protospacer
.*******************...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

140652 : 152404

EBPR_podovirus(36.36%)

tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157784626.1\|140652_141162_+\|terminase	terminase small subunit protein	A0A2K8HN72	Pseudomonas_phage	2.5e-21	47.3
WP_050983985.1\|141064_142483_+	DNA packaging protein	C8CLI4	Xylella_phage	4.1e-167	65.1
WP_037391850.1\|142482_144540_+\|portal	phage portal protein	F8TUR6	EBPR_podovirus	2.1e-204	60.2
WP_037391852.1\|144539_144776_+	hypothetical protein	NA	NA	NA	NA
WP_037391854.1\|144807_145773_+	hypothetical protein	F8TUR8	EBPR_podovirus	8.2e-34	33.3
WP_037391856.1\|145797_146793_+	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	3.6e-117	66.8
WP_037391858.1\|146805_147231_+	hypothetical protein	A0A218MMG4	uncultured_virus	3.8e-07	36.0
WP_167414950.1\|147297_147465_+	hypothetical protein	NA	NA	NA	NA
WP_037391860.1\|147461_147785_+	hypothetical protein	F8TUS1	EBPR_podovirus	9.5e-27	51.9
WP_037391862.1\|147781_148384_+	hypothetical protein	K8DWF6	Pseudomonas_phage	5.5e-12	25.6
WP_037391864.1\|148380_148983_+	hypothetical protein	A0A088FAT4	Sulfitobacter_phage	3.2e-20	33.0
WP_037391865.1\|148979_150593_+	hypothetical protein	F8TUS4	EBPR_podovirus	7.2e-83	38.4
WP_037391866.1\|150592_151054_+	hypothetical protein	NA	NA	NA	NA
WP_037391868.1\|151057_152404_+\|tail	tail fiber domain-containing protein	X2CY28	Brucella_phage	1.4e-34	30.7

DBSCAN-SWA_2

774512 : 781479

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037401578.1\|774512_775022_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.0e-27	42.6
WP_037401581.1\|775024_775723_+	aquaporin family protein	NA	NA	NA	NA
WP_037401594.1\|775719_776151_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.5e-45	64.5
WP_037401599.1\|776107_776851_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.6e-88	69.9
WP_050984174.1\|777188_778433_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	7.2e-99	55.7
WP_037401602.1\|778722_779112_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.9e-06	30.3
WP_037401605.1\|781218_781479_-	hypothetical protein	A0A076G717	Sinorhizobium_phage	6.9e-12	47.3

DBSCAN-SWA_3

1455715 : 1469848

uncultured_Mediterranean_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162129796.1\|1455715_1456579_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-32	35.3
WP_014328223.1\|1456571_1457297_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.7e-39	45.2
WP_014328224.1\|1457369_1458479_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-29	37.6
WP_014328225.1\|1458571_1458778_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.8e-08	68.2
WP_014328226.1\|1458855_1459569_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_014328227.1\|1459565_1460408_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.7e-44	41.4
WP_037393416.1\|1460447_1461731_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.2e-102	46.7
WP_037393414.1\|1461756_1462527_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-25	33.6
WP_037393412.1\|1462523_1463177_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-15	34.0
WP_014328231.1\|1463336_1463987_+	hypothetical protein	NA	NA	NA	NA
WP_037393411.1\|1464151_1465693_+	LysM peptidoglycan-binding domain-containing protein	Q8SBN9	Clostridium_phage	5.6e-16	35.9
WP_037393410.1\|1465725_1466601_-	ATP-binding protein	NA	NA	NA	NA
WP_037435264.1\|1466900_1467233_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	38.8
WP_037393390.1\|1467277_1469848_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.3e-53	44.0

DBSCAN-SWA_4

1594644 : 1669369

Rhizobium_phage(56.0%)

tail,head,transposase,tRNA,integrase,portal,capsid,terminase,protease

attL 1636116:1636131|attR 1674120:1674135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037437944.1\|1594644_1594995_+\|transposase	transposase	NA	NA	NA	NA
WP_109982119.1\|1594943_1595792_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-33	32.5
WP_014328326.1\|1595904_1597125_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_014328327.1\|1597124_1597619_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_014328328.1\|1597618_1598434_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.8e-57	50.8
WP_014328329.1\|1598443_1599457_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.5e-62	45.2
WP_037392749.1\|1599475_1601371_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_014328331.1\|1601739_1603386_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_014328332.1\|1603583_1604954_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	3.8e-16	27.3
WP_014328333.1\|1605100_1606927_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HPF5	Paramecium_bursaria_Chlorella_virus	1.5e-108	40.9
WP_037435895.1\|1606923_1607424_+	N-acetyltransferase	NA	NA	NA	NA
WP_037392752.1\|1607441_1608137_+	DUF502 domain-containing protein	NA	NA	NA	NA
WP_037392753.1\|1608158_1610264_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_014328337.1\|1610380_1610686_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_060563360.1\|1610694_1614207_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_014328339.1\|1614260_1614926_-	DsbA family protein	NA	NA	NA	NA
WP_037392779.1\|1615017_1616805_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014328341.1\|1617167_1617791_+	hypothetical protein	NA	NA	NA	NA
WP_014328342.1\|1617938_1618268_-	heat shock protein HspQ	NA	NA	NA	NA
WP_014328343.1\|1618450_1619860_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_003528058.1\|1619951_1620290_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_014328344.1\|1620635_1622111_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_014328345.1\|1622124_1622622_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_014328346.1\|1622809_1623565_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_014328347.1\|1623729_1624329_+	NAD(P)H:quinone oxidoreductase type IV	NA	NA	NA	NA
WP_014328348.1\|1624584_1624827_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_014328349.1\|1624919_1625138_+	hypothetical protein	NA	NA	NA	NA
WP_014328350.1\|1625221_1625428_-	hypothetical protein	NA	NA	NA	NA
WP_080577291.1\|1625424_1625631_-	hypothetical protein	NA	NA	NA	NA
WP_014328352.1\|1626140_1626731_-	hypothetical protein	NA	NA	NA	NA
WP_014328353.1\|1626947_1628195_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_037392765.1\|1628272_1628593_+	transcriptional activator HlyU	NA	NA	NA	NA
WP_014328355.1\|1628852_1630835_-	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
WP_037392773.1\|1631057_1632305_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.0e-16	41.6
WP_014328357.1\|1632318_1632780_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_014328358.1\|1632936_1634055_+	alanine dehydrogenase	NA	NA	NA	NA
WP_014328359.1\|1634103_1634571_-	DUF1203 domain-containing protein	NA	NA	NA	NA
WP_014328360.1\|1634653_1635217_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_037392792.1\|1635222_1636086_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_014328362.1\|1636103_1636853_-\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA
1636116:1636131	attL	NA	NA	NA	NA
WP_014328363.1\|1636861_1637902_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	2.4e-47	38.7
WP_014328364.1\|1638216_1639065_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014328365.1\|1639052_1639379_-	multidrug transporter	NA	NA	NA	NA
WP_037392795.1\|1639375_1639732_-	multidrug transporter	NA	NA	NA	NA
WP_050983997.1\|1639910_1641161_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.3e-84	46.7
WP_157784630.1\|1641143_1641716_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_050983998.1\|1641765_1641981_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_037392803.1\|1641977_1642496_+	hypothetical protein	NA	NA	NA	NA
WP_037392806.1\|1642562_1642742_+	hypothetical protein	NA	NA	NA	NA
WP_086018593.1\|1645632_1645809_+	hypothetical protein	NA	NA	NA	NA
WP_037392812.1\|1645820_1646132_+	hypothetical protein	NA	NA	NA	NA
WP_037392814.1\|1646128_1646539_+	hypothetical protein	NA	NA	NA	NA
WP_037392820.1\|1646768_1647932_+	hypothetical protein	NA	NA	NA	NA
WP_037392822.1\|1648430_1648628_-	hypothetical protein	NA	NA	NA	NA
WP_037392827.1\|1649186_1649603_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_050984000.1\|1649580_1651419_+\|terminase	terminase	B0VK29	Azospirillum_phage	1.3e-144	45.7
WP_037392829.1\|1651420_1652686_+\|portal	phage portal protein	B4UTP1	Rhizobium_phage	9.4e-171	75.0
WP_037392831.1\|1652682_1653309_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	6.3e-43	57.3
WP_037392833.1\|1653397_1654678_+\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	5.9e-181	77.2
WP_037392835.1\|1654723_1654954_+	hypothetical protein	B4UTP6	Rhizobium_phage	3.8e-30	86.8
WP_037392837.1\|1654913_1655459_+	hypothetical protein	B4UTP7	Rhizobium_phage	1.0e-97	96.1
WP_037392840.1\|1655476_1655887_+	lipase chaperone	B4UTP8	Rhizobium_phage	8.3e-36	63.3
WP_037392843.1\|1656037_1656388_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_037392848.1\|1656384_1656867_+	HK97 gp10 family phage protein	A0A141GEW6	Brucella_phage	2.2e-19	41.7
WP_037392851.1\|1656866_1657283_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011975484.1\|1657323_1657761_+	hypothetical protein	NA	NA	NA	NA
WP_037392854.1\|1657760_1658117_+	gene transfer agent family protein	B4UTQ4	Rhizobium_phage	2.5e-12	41.9
WP_157784631.1\|1658173_1658338_+	hypothetical protein	NA	NA	NA	NA
WP_037392857.1\|1658334_1658625_-	hypothetical protein	NA	NA	NA	NA
WP_037392859.1\|1658669_1660931_+	tape measure protein	B4UTQ6	Rhizobium_phage	7.6e-22	37.7
WP_037392862.1\|1660940_1661648_+	hypothetical protein	B4UTQ7	Rhizobium_phage	5.2e-118	87.6
WP_086018594.1\|1661660_1661825_+	hypothetical protein	B4UTQ8	Rhizobium_phage	8.5e-16	80.4
WP_037392865.1\|1661814_1662387_+	hypothetical protein	B4UTQ9	Rhizobium_phage	4.8e-90	84.7
WP_037392867.1\|1662371_1662785_+	hypothetical protein	B4UTR0	Rhizobium_phage	2.8e-55	76.6
WP_037392870.1\|1662795_1664919_+	hypothetical protein	B4UTR1	Rhizobium_phage	0.0e+00	85.6
WP_037392873.1\|1664992_1667326_+	hypothetical protein	B4UTR2	Rhizobium_phage	5.1e-05	33.3
WP_080577294.1\|1667413_1669369_-	glycosyltransferase	Q9YN04	Myxoma_virus	4.6e-07	24.6
1674120:1674135	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1863156 : 1870379

Pseudomonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042776321.1\|1863156_1864188_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	4.7e-11	29.8
WP_037396478.1\|1864184_1864886_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.9e-36	39.0
WP_014328465.1\|1864942_1866097_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	9.2e-48	34.5
WP_037396470.1\|1866163_1867195_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.4e-17	51.1
WP_037396481.1\|1867492_1867822_+	hypothetical protein	NA	NA	NA	NA
WP_037396473.1\|1868216_1868531_-	DUF1476 family protein	NA	NA	NA	NA
WP_012708153.1\|1868755_1869520_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.1e-44	43.5
WP_012708154.1\|1869555_1869798_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_037396499.1\|1869821_1870379_+	RNA 2'-phosphotransferase	A0A2H4UTN1	Bodo_saltans_virus	6.0e-29	42.0

DBSCAN-SWA_6

2140706 : 2153804

Sulfitobacter_phage(50.0%)

tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014328773.1\|2140706_2141918_-	hypothetical protein	A0A1Y0SVH2	Sinorhizobium_phage	3.0e-57	50.2
WP_037397223.1\|2142032_2143391_-\|tail	tail fiber domain-containing protein	M4NM77	Sulfitobacter_phage	4.4e-41	33.6
WP_014328775.1\|2143450_2143903_-	GNAT family N-acetyltransferase	X2CY06	Brucella_phage	4.9e-37	53.6
WP_014328777.1\|2145510_2146113_-	hypothetical protein	A0A088FAT4	Sulfitobacter_phage	1.7e-16	33.0
WP_014328778.1\|2146109_2146706_-	hypothetical protein	A0A2K9VHC9	Pseudomonas_phage	5.7e-09	25.4
WP_014328779.1\|2146702_2147026_-	hypothetical protein	F8TUS1	EBPR_podovirus	3.7e-23	49.5
WP_014328780.1\|2147022_2147199_-	hypothetical protein	NA	NA	NA	NA
WP_014328781.1\|2147265_2148261_-	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	4.4e-131	71.9
WP_014328782.1\|2148422_2149376_-	hypothetical protein	A0A088F6W8	Sulfitobacter_phage	3.3e-35	38.5
WP_014328783.1\|2149535_2149772_-	hypothetical protein	NA	NA	NA	NA
WP_037397216.1\|2150319_2152374_-\|portal	phage portal protein	A0A088F830	Sulfitobacter_phage	8.6e-198	58.7
WP_037397213.1\|2152373_2153804_-	DNA packaging protein	C8CLI4	Xylella_phage	3.1e-170	64.3

DBSCAN-SWA_7

2542112 : 2576829

Bacillus_phage(40.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037437113.1\|2542112_2542832_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_037400814.1\|2543015_2543228_-	hypothetical protein	NA	NA	NA	NA
WP_109982165.1\|2543307_2546337_-	calcium-binding protein	NA	NA	NA	NA
WP_037400800.1\|2546600_2549639_-	hypothetical protein	NA	NA	NA	NA
WP_014329131.1\|2550188_2551295_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012708843.1\|2551349_2551661_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_014329132.1\|2551837_2552941_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_014329133.1\|2552980_2553436_+	MaoC family dehydratase	NA	NA	NA	NA
WP_014329134.1\|2553432_2553903_+	MaoC family dehydratase	NA	NA	NA	NA
WP_037400797.1\|2553985_2554528_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.2e-36	44.8
WP_012708848.1\|2554825_2555011_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_014329136.1\|2555026_2556286_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	3.6e-53	43.4
WP_014329137.1\|2556282_2556915_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_014329138.1\|2556911_2557535_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_037400794.1\|2557801_2558815_+	MoxR family ATPase	NA	NA	NA	NA
WP_014329140.1\|2558818_2559739_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_167331216.1\|2559738_2562549_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_037400792.1\|2562556_2564626_+	membrane protein	NA	NA	NA	NA
WP_014329144.1\|2565100_2565661_-	N-acetyltransferase	NA	NA	NA	NA
WP_014329145.1\|2565912_2566890_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_109982119.1\|2567013_2567862_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-33	32.5
WP_037437944.1\|2567810_2568161_-\|transposase	transposase	NA	NA	NA	NA
WP_014329146.1\|2568520_2569009_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_037437944.1\|2569324_2569675_+\|transposase	transposase	NA	NA	NA	NA
WP_109982119.1\|2569623_2570472_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-33	32.5
WP_014329147.1\|2570754_2571663_+	metallophosphoesterase	NA	NA	NA	NA
WP_014329148.1\|2571834_2572380_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014329149.1\|2572560_2573079_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_037396124.1\|2573082_2573910_+	anti-sigma factor	NA	NA	NA	NA
WP_037396121.1\|2574107_2575817_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_037396119.1\|2576244_2576829_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3

DBSCAN-SWA_8

2634894 : 2669244

Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)

tail,head,tRNA,integrase,portal,capsid,protease

attL 2663895:2663912|attR 2675008:2675025

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037396083.1\|2634894_2635611_+\|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	NA	NA	NA	NA
WP_014329204.1\|2635719_2636172_-	hypothetical protein	NA	NA	NA	NA
WP_037396037.1\|2636823_2638356_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.4e-58	36.7
WP_014329206.1\|2638501_2639059_-	cysteine hydrolase	NA	NA	NA	NA
WP_014329207.1\|2639069_2640002_-	DMT family transporter	NA	NA	NA	NA
WP_037396035.1\|2640137_2640599_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_048655303.1\|2640925_2642320_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_014329210.1\|2642324_2643266_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_037396033.1\|2643282_2644137_+	transglutaminase family protein	NA	NA	NA	NA
WP_037429073.1\|2644325_2646071_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_014329213.1\|2646166_2647600_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_037396023.1\|2647672_2648668_-	GguC protein	NA	NA	NA	NA
WP_014329215.1\|2648822_2650037_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_014329216.1\|2650036_2651572_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-17	25.2
WP_014329217.1\|2651760_2652828_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014329218.1\|2653103_2654087_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014329219.1\|2654186_2654645_+	hypothetical protein	NA	NA	NA	NA
WP_014329220.1\|2654648_2654879_-	hypothetical protein	NA	NA	NA	NA
WP_014329221.1\|2655290_2656283_+	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_014329222.1\|2656347_2658702_-	EAL domain-containing protein	NA	NA	NA	NA
WP_037396015.1\|2658813_2660025_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_014329224.1\|2660266_2661307_+	D-xylose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_037396013.1\|2661460_2662777_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_037396011.1\|2662792_2663578_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-19	29.8
2663895:2663912	attL	NA	NA	NA	NA
WP_037396009.1\|2663948_2664992_-\|integrase	tyrosine-type recombinase/integrase	B0VK72	Azospirillum_phage	1.4e-26	31.5
WP_080577550.1\|2664988_2665243_-	hypothetical protein	NA	NA	NA	NA
WP_037396007.1\|2665229_2665760_-	hypothetical protein	NA	NA	NA	NA
WP_037396005.1\|2665771_2666116_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_037396003.1\|2666112_2667330_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	4.3e-56	34.7
WP_037396000.1\|2667329_2667857_-\|head,protease	HK97 family phage prohead protease	A0A2K9VGN9	Pontimonas_phage	1.6e-31	51.0
WP_037395999.1\|2667853_2668132_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_037395997.1\|2668131_2669244_-\|capsid	phage major capsid protein	K7XS73	uncultured_Mediterranean_phage	6.4e-38	31.8
2675008:2675025	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP029452

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

598357 : 635082

Leptospira_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037471040.1\|598357_598600_+\|transposase	transposase	NA	NA	NA	NA
WP_014327268.1\|598793_599090_-	hypothetical protein	NA	NA	NA	NA
WP_014327269.1\|599089_600712_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-102	39.3
WP_014332410.1\|600776_601124_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.4e-14	36.6
WP_041409271.1\|601120_601489_-\|transposase	transposase	NA	NA	NA	NA
WP_037471036.1\|601707_603300_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	4.8e-55	33.8
WP_080581779.1\|603397_603676_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.0e-09	37.3
WP_095678167.1\|605422_606509_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.8e-44	44.7
WP_050984210.1\|606569_607823_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_050996901.1\|608040_608346_-	hypothetical protein	NA	NA	NA	NA
WP_037402644.1\|608422_609757_-	RkpR, polysaccharide export protein	NA	NA	NA	NA
WP_037402642.1\|609757_610417_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-08	28.0
WP_037402639.1\|610413_611184_-	ABC transporter permease	NA	NA	NA	NA
WP_037402637.1\|611188_612490_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_037402635.1\|612597_613512_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_037402633.1\|614287_614671_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_037402653.1\|614667_614862_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_037402650.1\|615391_616558_-	ATP-binding protein	NA	NA	NA	NA
WP_162129735.1\|616814_617138_+	hypothetical protein	NA	NA	NA	NA
WP_109982230.1\|619163_620876_-	hypothetical protein	NA	NA	NA	NA
WP_109982231.1\|621388_621916_+	hypothetical protein	NA	NA	NA	NA
WP_037402730.1\|623307_624219_-	ABC transporter permease	NA	NA	NA	NA
WP_037402726.1\|624215_625316_-	ABC transporter permease	NA	NA	NA	NA
WP_037402724.1\|625312_626848_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.4e-21	29.3
WP_037402721.1\|626851_627952_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_037402736.1\|627974_629354_-	amidohydrolase	NA	NA	NA	NA
WP_037402718.1\|629355_630015_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_037402715.1\|630857_631511_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_037402712.1\|631958_632186_+	hypothetical protein	NA	NA	NA	NA
WP_095689778.1\|633990_635082_-\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029453

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029451

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP029452

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection