CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP029591	Klebsiella pneumoniae strain DA33144 plasmid pDA33144-220, complete sequence	0 crisprs	csa3	2
NZ_CP029590	Klebsiella pneumoniae strain DA33144 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,DinG	9
NZ_CP029592	Klebsiella pneumoniae strain DA33144 plasmid pDA33144-5, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46102 : 69270

Salmonella_phage(30.0%)

transposase,protease,integrase

attL 50681:50740|attR 76805:77624

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|46102_46756_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|46848_47106_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|47038_47440_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|47576_50474_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
50681:50740	attL	NA	NA	NA	NA
WP_001067855.1\|50743_51448_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|51569_52475_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|52471_53710_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|53709_54294_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|54786_55551_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|55777_56083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|56093_57299_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|57454_57658_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|57785_58625_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|58618_58966_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|59129_59921_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001336345.1\|59926_60217_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|60328_60826_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|60970_61984_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|62186_62537_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|62662_63223_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000027057.1\|65843_66704_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|66886_67444_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|68007_69270_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
76805:77624	attR	NA	NA	NA	NA

DBSCAN-SWA_2

73101 : 104659

Escherichia_phage(50.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004217321.1\|73101_73806_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_063840321.1\|73949_74504_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|74634_75465_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_001067855.1\|76096_76801_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032140899.1\|78422_78665_+	hypothetical protein	NA	NA	NA	NA
WP_000164043.1\|78696_79347_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|79452_80652_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|80683_81568_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|81705_82098_-	cysteine hydrolase	NA	NA	NA	NA
WP_032409011.1\|82874_83399_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	8.8e-14	34.4
WP_044117068.1\|83428_84097_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_004217321.1\|85400_86105_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_014386147.1\|86960_87788_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	37.6
WP_004152695.1\|87784_88648_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|88656_89484_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|89492_90503_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|90496_91366_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014386148.1\|92574_93555_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_004118209.1\|94756_95020_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|95034_95298_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|95541_95823_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|95857_96427_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|96541_99337_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152115.1\|99336_99534_+	hypothetical protein	NA	NA	NA	NA
WP_009483782.1\|99771_100521_+	diguanylate cyclase	NA	NA	NA	NA
WP_004152113.1\|100507_101470_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020314316.1\|103312_104659_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029590

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029590_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029590_1

806998-807092

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029590_1

>merge|NZ_CP029590|1|806998-807092|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP029590|1|1|806998-807092|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029590.1\|WP_002888345.1\|805544_806909_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP029590.1\|WP_002888332.1\|809579_810407_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP029590.1\|WP_004177424.1\|796116_797619_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP029590.1\|WP_023342999.1\|798627_800985_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP029590.1\|WP_004145972.1\|793213_794059_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP029590.1\|WP_004147026.1\|810650_812999_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP029590.1\|WP_002888323.1\|816155_816533_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP029590.1\|WP_004178574.1\|801172_804079_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP029590.1\|WP_023342998.1\|794396_796106_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP029590.1\|WP_002888329.1\|813053_814340_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP029590.1\|WP_004177431.1\|816537_817386_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP029590.1\|WP_002888324.1\|815331_816153_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP029590.1\|WP_020802792.1\|794044_794215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029590.1\|WP_002888320.1\|817979_818459_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP029590.1\|WP_016531719.1\|797756_798452_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP029590.1\|WP_023302315.1\|807233_808859_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP029590.1\|WP_004177427.1\|804091_804751_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP029590.1\|WP_023343000.1\|814345_815335_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP029590.1\|WP_002888347.1\|804825_805365_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP029590.1\|WP_002888337.1\|808848_809547_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
NZ_CP029590.1\|WP_002888345.1\|805544_806909_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP029590.1\|WP_002888332.1\|809579_810407_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP029590.1\|WP_004177424.1\|796116_797619_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP029590.1\|WP_023342999.1\|798627_800985_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP029590.1\|WP_004145972.1\|793213_794059_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP029590.1\|WP_004147026.1\|810650_812999_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP029590.1\|WP_002888323.1\|816155_816533_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP029590.1\|WP_004178574.1\|801172_804079_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP029590.1\|WP_023342998.1\|794396_796106_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP029590.1\|WP_002888329.1\|813053_814340_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP029590.1\|WP_004177431.1\|816537_817386_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP029590.1\|WP_002888324.1\|815331_816153_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP029590.1\|WP_002888320.1\|817979_818459_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP029590.1\|WP_016531719.1\|797756_798452_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP029590.1\|WP_023302315.1\|807233_808859_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
NZ_CP029590.1\|WP_004177427.1\|804091_804751_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP029590.1\|WP_023343000.1\|814345_815335_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP029590.1\|WP_002888347.1\|804825_805365_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP029590.1\|WP_002888337.1\|808848_809547_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66

>NZ_CP029590.1|WP_002888345.1|805544_806909_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP029590.1|WP_002888347.1|804825_805365_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP029590.1|WP_004177427.1|804091_804751_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP029590.1|WP_004178574.1|801172_804079_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP029590.1|WP_023342999.1|798627_800985_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP029590.1|WP_016531719.1|797756_798452_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP029590.1|WP_004177424.1|796116_797619_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP029590.1|WP_023342998.1|794396_796106_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP029590.1|WP_020802792.1|794044_794215_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPVACIPP
>NZ_CP029590.1|WP_004145972.1|793213_794059_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP029590.1|WP_023302315.1|807233_808859_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP029590.1|WP_002888337.1|808848_809547_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP029590.1|WP_002888332.1|809579_810407_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP029590.1|WP_004147026.1|810650_812999_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP029590.1|WP_002888329.1|813053_814340_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP029590.1|WP_023343000.1|814345_815335_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP029590.1|WP_002888324.1|815331_816153_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP029590.1|WP_002888323.1|816155_816533_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP029590.1|WP_004177431.1|816537_817386_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP029590.1|WP_002888320.1|817979_818459_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

281475 : 332859

Cronobacter_phage(27.08%)

tRNA,terminase,head,integrase,lysis

attL 280958:281004|attR 329930:329976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
280958:281004	attL	NA	NA	NA	NA
WP_040181289.1\|281475_281715_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
WP_071854268.1\|281820_282621_-	hypothetical protein	NA	NA	NA	NA
WP_040186451.1\|284706_287184_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
WP_040181295.1\|287170_287566_-	hypothetical protein	F1C5F2	Cronobacter_phage	4.7e-36	54.8
WP_004196571.1\|287562_288033_-	hypothetical protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
WP_023283377.1\|288032_288509_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
WP_071854269.1\|288622_289036_+	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_040181302.1\|289055_289235_-	hypothetical protein	NA	NA	NA	NA
WP_058842809.1\|289275_292716_-	tape measure protein	Q5G8W8	Enterobacteria_phage	7.3e-133	40.5
WP_029884072.1\|292810_293314_-	hypothetical protein	NA	NA	NA	NA
WP_074160392.1\|293416_293644_-	hypothetical protein	NA	NA	NA	NA
WP_129693860.1\|293738_294056_+	hypothetical protein	NA	NA	NA	NA
WP_023328739.1\|294107_294428_-	hypothetical protein	NA	NA	NA	NA
WP_048294323.1\|294910_295384_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.1e-14	40.6
WP_072061015.1\|295420_295852_-	hypothetical protein	NA	NA	NA	NA
WP_129312537.1\|295862_296228_-	hypothetical protein	NA	NA	NA	NA
WP_049182521.1\|296224_296530_-	hypothetical protein	NA	NA	NA	NA
WP_004178855.1\|296834_297518_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.3e-75	59.7
WP_048294321.1\|297570_298323_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
WP_048294319.1\|298391_298784_-	hypothetical protein	G0ZNE4	Cronobacter_phage	2.0e-34	51.9
WP_004151265.1\|298780_299206_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_058842810.1\|299208_299571_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.3e-20	49.2
WP_038434988.1\|299570_299744_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_058842811.1\|299743_300124_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.8e-29	56.1
WP_058842812.1\|300126_300402_-	hypothetical protein	NA	NA	NA	NA
WP_004191540.1\|300412_301507_-	hypothetical protein	F1C5E1	Cronobacter_phage	2.2e-123	62.8
WP_058842813.1\|301518_301947_-	hypothetical protein	F1C5E0	Cronobacter_phage	8.1e-42	60.8
WP_040186437.1\|301950_303336_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.5e-153	59.7
WP_049185996.1\|303408_303759_-	hypothetical protein	NA	NA	NA	NA
WP_064148479.1\|303858_304872_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.5e-110	67.5
WP_058842815.1\|304804_306268_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.0e-149	56.1
WP_048294304.1\|306280_307579_-\|terminase	PBSX family phage terminase large subunit	Q5G8Y7	Enterobacteria_phage	3.0e-241	94.3
WP_048294303.1\|307562_308030_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.5e-57	73.8
WP_058842816.1\|308060_308687_-	hypothetical protein	I6S676	Salmonella_phage	8.4e-104	84.9
WP_058842820.1\|309536_309995_+	hypothetical protein	NA	NA	NA	NA
WP_087760209.1\|310428_310566_-	hypothetical protein	NA	NA	NA	NA
WP_058842818.1\|310568_311036_-\|lysis	lysis protein	A0A192Y689	Salmonella_phage	1.0e-53	71.6
WP_004146527.1\|311032_311563_-	lysozyme	G9L6J6	Escherichia_phage	5.4e-80	79.7
WP_004151282.1\|311565_311814_-	hypothetical protein	NA	NA	NA	NA
WP_048322094.1\|312241_312766_+	hypothetical protein	NA	NA	NA	NA
WP_048322093.1\|313110_313800_-	antiterminator	I6PDF8	Cronobacter_phage	1.9e-56	54.5
WP_048322092.1\|313796_313937_-	YlcG family protein	NA	NA	NA	NA
WP_058842819.1\|313933_314569_-	NinG family protein	M9NYX8	Enterobacteria_phage	2.2e-80	77.0
WP_032431555.1\|314561_314732_-	NinE family protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
WP_016530701.1\|314712_315180_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.5e-33	46.5
WP_048322089.1\|315370_315628_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	74.0
WP_032432693.1\|315956_316154_-	hypothetical protein	NA	NA	NA	NA
WP_048322087.1\|316146_316413_-	hypothetical protein	A0A077SLR0	Escherichia_phage	4.6e-27	69.8
WP_048322086.1\|317424_317943_-	hypothetical protein	G9L6B3	Escherichia_phage	1.8e-91	92.7
WP_048322084.1\|318445_318643_-	hypothetical protein	NA	NA	NA	NA
WP_048322083.1\|318635_318899_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.3e-29	75.6
WP_040181698.1\|318895_319318_-	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_004218528.1\|319314_319617_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181695.1\|319613_320351_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_040181719.1\|320347_321313_-	replication protein	K7PGZ0	Enterobacteria_phage	5.1e-60	78.9
WP_040181694.1\|321372_322170_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
WP_004139615.1\|322255_322477_-	bacteriophage CII family protein	NA	NA	NA	NA
WP_004178811.1\|322516_322750_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_024622727.1\|322854_323544_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_032434121.1\|323884_324601_+	hypothetical protein	NA	NA	NA	NA
WP_032434120.1\|324591_325137_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_024622729.1\|325185_325389_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.0e-18	71.6
WP_074183191.1\|325698_325824_+	hypothetical protein	NA	NA	NA	NA
WP_019704100.1\|325816_326011_+	hypothetical protein	NA	NA	NA	NA
WP_040182107.1\|326100_326385_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_040182110.1\|326401_327148_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182112.1\|327144_327768_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182113.1\|327796_328324_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182114.1\|328320_328539_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_071531921.1\|328540_328876_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021441323.1\|328752_329916_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
WP_004143017.1\|330347_331214_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
329930:329976	attR	NA	NA	NA	NA
WP_004143016.1\|331215_331428_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|331473_332859_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_2

2997567 : 3057046

Enterobacteria_phage(15.56%)

tRNA,terminase,tail,portal,head,integrase,protease,holin,capsid

attL 3020567:3020590|attR 3060312:3060335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004145598.1\|2997567_2998986_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002913435.1\|2999037_2999430_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002913434.1\|2999433_2999787_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_023301631.1\|3000408_3002580_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002913423.1\|3002628_3003831_-	nucleoside permease NupC	NA	NA	NA	NA
WP_002913421.1\|3004177_3005419_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_004899719.1\|3005476_3005830_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_023301632.1\|3005960_3006953_-	oxidoreductase	NA	NA	NA	NA
WP_023301633.1\|3007133_3008795_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_004180794.1\|3008791_3010027_-	ion channel protein	NA	NA	NA	NA
WP_002913377.1\|3010290_3011256_+	glucokinase	NA	NA	NA	NA
WP_004145587.1\|3011309_3012062_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
WP_004149230.1\|3012058_3013756_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
WP_004153200.1\|3013754_3013868_+	hypothetical protein	NA	NA	NA	NA
WP_032409803.1\|3013864_3014050_-	hypothetical protein	NA	NA	NA	NA
WP_002913372.1\|3014138_3015353_+	alanine transaminase	NA	NA	NA	NA
WP_099119320.1\|3015423_3015495_-	membrane protein YpdK	NA	NA	NA	NA
WP_004185022.1\|3015833_3017030_-	MFS transporter	NA	NA	NA	NA
WP_023301635.1\|3017026_3017485_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	7.2e-12	33.1
WP_004149227.1\|3017617_3018526_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_023301636.1\|3018535_3019417_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004174945.1\|3019783_3020266_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
3020567:3020590	attL	NA	NA	NA	NA
WP_040181793.1\|3020784_3021954_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	4.3e-202	86.0
WP_040181795.1\|3021986_3022925_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_040181798.1\|3023133_3023781_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.2e-44	57.3
WP_040181799.1\|3023780_3023993_-	hypothetical protein	R9TNC2	Aeromonas_phage	8.6e-37	97.1
WP_040181802.1\|3024584_3025661_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.5e-148	73.8
WP_040181805.1\|3025660_3026446_-	hypothetical protein	A4JX52	Burkholderia_virus	7.6e-62	50.6
WP_040181807.1\|3026445_3026745_-	hypothetical protein	NA	NA	NA	NA
WP_032408726.1\|3027591_3028239_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
WP_016530206.1\|3028343_3028541_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
WP_004213338.1\|3028566_3029028_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_071557781.1\|3029265_3029478_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.4e-16	70.9
WP_060618150.1\|3029434_3030349_+	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	57.3
WP_040181816.1\|3030345_3031155_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.3e-109	68.9
WP_040181820.1\|3031164_3031542_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
WP_040181823.1\|3031554_3032535_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.4e-135	66.9
WP_040181825.1\|3032548_3033127_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_040181828.1\|3033233_3033839_+	hypothetical protein	NA	NA	NA	NA
WP_001294159.1\|3034078_3034465_+	membrane protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
WP_000243811.1\|3034451_3034733_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.8e-19	48.4
WP_040181832.1\|3034732_3035362_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	2.5e-87	75.4
WP_040181834.1\|3035364_3035640_+	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-05	80.6
WP_040181839.1\|3035900_3036089_+	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	3.2e-19	77.0
WP_077256034.1\|3036126_3036252_+	hypothetical protein	M1FJ79	Enterobacteria_phage	2.4e-07	66.7
WP_040181841.1\|3036287_3036743_-	hypothetical protein	NA	NA	NA	NA
WP_040181844.1\|3036815_3037166_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	4.1e-52	81.0
WP_001119413.1\|3037324_3037822_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.4e-63	71.3
WP_064162524.1\|3037825_3039577_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	3.3e-251	72.0
WP_000923127.1\|3039724_3040951_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	2.5e-208	85.3
WP_000999827.1\|3040943_3041543_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_040181854.1\|3041552_3042791_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.9e-153	67.0
WP_019705272.1\|3042868_3043186_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	7.4e-24	52.9
WP_019705271.1\|3043194_3043533_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	68.8
WP_019705270.1\|3043529_3043979_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_016530186.1\|3043975_3044323_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_040181857.1\|3044379_3045084_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.6e-79	66.5
WP_021313622.1\|3045114_3045519_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
WP_004177139.1\|3045521_3045827_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|3045900_3046134_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_040181859.1\|3046194_3049581_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	4.7e-302	57.7
WP_004884312.1\|3049602_3050076_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_040181862.1\|3050062_3050539_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.4e-49	63.9
WP_040181864.1\|3050551_3050932_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.5e-58	81.0
WP_040181865.1\|3050928_3054006_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.1
WP_040181868.1\|3056051_3056852_+	hypothetical protein	NA	NA	NA	NA
WP_074177881.1\|3056863_3057046_+	helix-turn-helix domain-containing protein	A0A286S1P7	Klebsiella_phage	1.5e-18	88.9
3060312:3060335	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3281955 : 3288860

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|3281955_3282819_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|3282829_3283603_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|3283843_3284740_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|3284982_3286344_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|3286662_3287385_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|3287381_3288860_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_4

3558354 : 3628008

Salmonella_phage(25.81%)

terminase,lysis,integrase,plate

attL 3556525:3556542|attR 3595223:3595240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3556525:3556542	attL	NA	NA	NA	NA
WP_004175494.1\|3558354_3559650_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_074183181.1\|3559661_3560471_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021312745.1\|3560711_3561974_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
WP_040181674.1\|3562016_3562262_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_016529283.1\|3562265_3562484_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
WP_040181675.1\|3562480_3562690_-	hypothetical protein	NA	NA	NA	NA
WP_040181676.1\|3562686_3562992_-	hypothetical protein	A0A1B3AZN4	Gordonia_phage	7.4e-05	35.6
WP_040181677.1\|3562988_3563180_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.6e-13	64.4
WP_040181678.1\|3563176_3563941_-	hypothetical protein	Q71T76	Escherichia_phage	2.7e-72	58.7
WP_040181679.1\|3564157_3564928_-	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_040181681.1\|3564924_3565452_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_016529279.1\|3565448_3565607_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_040181683.1\|3565603_3566290_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_129693859.1\|3566282_3566903_-	hypothetical protein	A0A076GAP8	Staphylococcus_phage	5.5e-23	43.8
WP_040181685.1\|3566899_3567745_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
WP_040181687.1\|3567760_3568045_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.3e-39	78.7
WP_004151303.1\|3568134_3568329_-	hypothetical protein	NA	NA	NA	NA
WP_040181689.1\|3568321_3568432_-	hypothetical protein	NA	NA	NA	NA
WP_040181691.1\|3568773_3569406_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	9.2e-34	40.0
WP_023284762.1\|3569505_3569721_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	4.2e-15	60.9
WP_040181693.1\|3569770_3570091_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	7.7e-37	69.8
WP_040181694.1\|3570177_3570975_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
WP_040181719.1\|3571034_3572000_+	replication protein	K7PGZ0	Enterobacteria_phage	5.1e-60	78.9
WP_040181695.1\|3571996_3572734_+	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_004218528.1\|3572730_3573033_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181698.1\|3573029_3573452_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_040181701.1\|3573448_3573709_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_004141386.1\|3574240_3574453_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_087750241.1\|3575081_3575495_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.1e-11	34.6
WP_040181178.1\|3575995_3576451_+	hypothetical protein	K7P7B8	Enterobacteria_phage	4.0e-55	68.2
WP_040181180.1\|3576450_3576621_+	NinE family protein	G8C7V4	Escherichia_phage	1.7e-14	73.2
WP_040181182.1\|3576613_3577252_+	bacteriophage Lambda NinG protein	H6WRY9	Salmonella_phage	1.2e-73	68.4
WP_040181184.1\|3577248_3577389_+	YlcG family protein	NA	NA	NA	NA
WP_040181186.1\|3577385_3578195_+	antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-116	75.1
WP_004146347.1\|3579380_3579695_+	hypothetical protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
WP_040181191.1\|3579697_3580201_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
WP_040181192.1\|3580197_3580665_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
WP_087749278.1\|3580667_3580805_+	hypothetical protein	NA	NA	NA	NA
WP_021441335.1\|3581161_3581650_+	hypothetical protein	NA	NA	NA	NA
WP_040181195.1\|3581600_3583001_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
WP_039108763.1\|3583238_3584690_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	7.2e-191	68.4
WP_025714257.1\|3584745_3585294_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
WP_025714258.1\|3585339_3585534_+	hypothetical protein	NA	NA	NA	NA
WP_040181203.1\|3585543_3586746_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.3e-107	52.8
WP_040181205.1\|3586749_3587244_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
WP_040181207.1\|3587255_3588197_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	7.8e-138	77.4
WP_040181209.1\|3588236_3588518_+	hypothetical protein	NA	NA	NA	NA
WP_040181211.1\|3588486_3588906_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.1e-40	61.5
WP_040181213.1\|3588902_3589409_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	2.4e-16	37.2
WP_023312779.1\|3589408_3589795_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
WP_004152176.1\|3589889_3590330_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_040181215.1\|3590333_3591479_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	77.2
WP_023312781.1\|3591488_3591932_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
WP_040181217.1\|3591935_3592355_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.8e-41	63.4
WP_016244729.1\|3592396_3592549_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
WP_040181220.1\|3592538_3594458_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	3.0e-192	72.3
WP_024191492.1\|3594643_3595057_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.8e-30	55.1
WP_074183180.1\|3595132_3595360_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.7e-19	54.7
3595223:3595240	attR	NA	NA	NA	NA
WP_040181225.1\|3595362_3596394_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.5e-99	54.0
WP_087760196.1\|3596494_3596728_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	8.9e-19	52.6
WP_040181227.1\|3596766_3597273_+	hypothetical protein	A0A0M3ULK2	Salmonella_phage	3.1e-32	47.6
WP_040181228.1\|3597311_3598067_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.0e-84	66.0
WP_023312790.1\|3598066_3598420_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.8e-50	79.5
WP_040181231.1\|3598419_3599619_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	1.3e-161	75.3
WP_040181232.1\|3599615_3600389_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
WP_023284799.1\|3600388_3601162_+	hypothetical protein	A0A248SL44	Klebsiella_phage	3.0e-26	49.7
WP_087750251.1\|3601180_3603160_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	6.9e-27	28.0
WP_072040613.1\|3603169_3603970_+	hypothetical protein	NA	NA	NA	NA
WP_040181236.1\|3604075_3604315_+	hypothetical protein	K7P7N3	Enterobacteria_phage	1.1e-16	54.4
WP_040181238.1\|3604314_3604632_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-22	52.0
WP_040181240.1\|3605606_3606089_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|3606280_3606979_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_002910652.1\|3607004_3607544_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|3607658_3607988_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_032411811.1\|3608155_3608317_+	hypothetical protein	NA	NA	NA	NA
WP_009307582.1\|3608553_3609894_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004175498.1\|3609890_3610544_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307583.1\|3610547_3612245_+	OmpA family protein	NA	NA	NA	NA
WP_009307584.1\|3612703_3615331_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-17	31.5
WP_023342696.1\|3615333_3617361_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	2.6e-74	31.6
WP_004148791.1\|3617375_3618272_+	hypothetical protein	NA	NA	NA	NA
WP_032413757.1\|3618764_3619172_+	hypothetical protein	NA	NA	NA	NA
WP_029499423.1\|3619197_3619455_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_040181245.1\|3619459_3620671_+	hypothetical protein	NA	NA	NA	NA
WP_029498250.1\|3621135_3624102_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_040181246.1\|3624235_3625999_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152910.1\|3626028_3627045_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004184604.1\|3627025_3627562_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152261.1\|3627564_3628008_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

4298615 : 4308030

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162557934.1\|4298615_4300250_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.6e-183	56.0
WP_004176258.1\|4300304_4301570_+	MFS transporter	NA	NA	NA	NA
WP_040182017.1\|4301600_4302689_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176262.1\|4302775_4303036_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|4303333_4304194_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|4304214_4304976_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|4305237_4306140_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_032423485.1\|4306151_4307417_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|4307409_4308030_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

4578303 : 4599546

Pseudomonas_phage(30.0%)

tail,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077264109.1\|4578303_4581219_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-90	34.2
WP_129693861.1\|4581798_4582197_-	hypothetical protein	NA	NA	NA	NA
WP_012967913.1\|4582264_4582462_-	hypothetical protein	NA	NA	NA	NA
WP_012967912.1\|4582599_4583082_-	hypothetical protein	NA	NA	NA	NA
WP_048289860.1\|4583136_4584309_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_012967910.1\|4584332_4584725_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_012967909.1\|4584721_4585273_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_048289859.1\|4585274_4585658_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	1.6e-20	43.7
WP_072072127.1\|4585644_4585878_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	6.4e-09	49.2
WP_048289858.1\|4585887_4586142_-	hypothetical protein	J9Q7U0	Salmonella_phage	3.0e-20	51.2
WP_048289857.1\|4586143_4586539_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	4.3e-13	43.3
WP_133060713.1\|4586579_4586852_-	hypothetical protein	NA	NA	NA	NA
WP_048289856.1\|4586860_4587814_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-132	74.4
WP_048289855.1\|4587824_4588604_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.7e-67	64.0
WP_048289854.1\|4589116_4590229_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.6e-110	55.1
WP_048267898.1\|4590212_4591613_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.4e-127	53.5
WP_016946682.1\|4591614_4592928_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
WP_048289853.1\|4592911_4593907_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004190672.1\|4594995_4595271_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_048289852.1\|4595267_4595612_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.6e-38	79.8
WP_004184488.1\|4595608_4596148_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_024176410.1\|4596144_4596444_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_048289851.1\|4597201_4598023_-	antitermination protein	K7PKS8	Enterobacteria_phage	5.1e-85	60.6
WP_086528373.1\|4598019_4598160_-	YlcG family protein	NA	NA	NA	NA
WP_048289850.1\|4598156_4598738_-	protein ninG	E7C9S3	Salmonella_phage	2.7e-40	44.8
WP_086528372.1\|4598946_4599546_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.8e-90	79.4

DBSCAN-SWA_7

4603978 : 4619610

Salmonella_phage(50.0%)

integrase

attL 4602736:4602749|attR 4619899:4619912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4602736:4602749	attL	NA	NA	NA	NA
WP_032445505.1\|4603978_4604179_-	hypothetical protein	A0A1U8QWK2	Salmonella_phage	3.2e-09	57.5
WP_032445503.1\|4604654_4604891_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	7.1e-32	90.7
WP_019705292.1\|4604883_4605087_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.6e-30	92.5
WP_032423776.1\|4605083_4605452_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.9e-11	43.0
WP_004215885.1\|4605444_4606188_-	replication protein P	A0A0M3ULE2	Salmonella_phage	3.1e-65	55.2
WP_004215886.1\|4606184_4607105_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.7e-92	61.3
WP_032445502.1\|4607455_4607992_-	hypothetical protein	M9NZI6	Enterobacteria_phage	6.3e-60	68.9
WP_023320775.1\|4607994_4608222_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	3.4e-15	50.0
WP_050485525.1\|4608326_4608761_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.3e-15	39.0
WP_004179600.1\|4609149_4609341_+	YebW family protein	NA	NA	NA	NA
WP_012967861.1\|4609349_4609505_+	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	1.2e-14	75.0
WP_048289849.1\|4609642_4612681_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.0e-292	57.2
WP_048289848.1\|4612693_4613803_+	recombinase RecT	H6WRX0	Salmonella_phage	9.4e-183	85.9
WP_004190719.1\|4613837_4614176_+	hypothetical protein	NA	NA	NA	NA
WP_016160779.1\|4614168_4614780_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.9e-40	75.3
WP_048289847.1\|4614776_4615085_+	hypothetical protein	I6PD68	Cronobacter_phage	4.6e-23	55.9
WP_004892750.1\|4615092_4615332_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_048289846.1\|4615552_4616770_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.3e-120	51.6
WP_004151901.1\|4616916_4617807_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|4617806_4618799_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|4618800_4619610_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
4619899:4619912	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4738982 : 4785120

Enterobacteria_phage(54.55%)

tRNA,terminase,tail,portal,head,integrase,plate,capsid

attL 4744210:4744227|attR 4781386:4781403

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|4738982_4739483_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|4739599_4740046_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|4740029_4740824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|4740931_4742107_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|4742138_4742831_-	CTP synthase	NA	NA	NA	NA
WP_020802835.1\|4742976_4743486_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|4743490_4743829_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|4743818_4744058_-	DUF333 domain-containing protein	NA	NA	NA	NA
4744210:4744227	attL	NA	NA	NA	NA
WP_004213128.1\|4744322_4744574_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_040181406.1\|4744617_4745757_-	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
WP_040181409.1\|4745911_4747084_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
WP_004216461.1\|4747083_4747599_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_004131585.1\|4747644_4747962_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_075604421.1\|4747961_4748120_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_040181412.1\|4748106_4751082_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
WP_040181415.1\|4751097_4751571_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
WP_040181417.1\|4752034_4752697_-	hypothetical protein	NA	NA	NA	NA
WP_052450975.1\|4752714_4753938_-	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
WP_040181419.1\|4754537_4755635_-\|tail	tail fiber protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
WP_023339950.1\|4755634_4755847_-	hypothetical protein	NA	NA	NA	NA
WP_110047733.1\|4755843_4758870_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_023300878.1\|4758859_4759783_-	hypothetical protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040181426.1\|4759784_4760135_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
WP_009486481.1\|4760131_4760719_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_020316957.1\|4760715_4761351_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_040181428.1\|4761347_4761815_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
WP_158246032.1\|4761815_4762151_-	peptidase	B6SD31	Bacteriophage	2.1e-05	33.3
WP_023339943.1\|4762337_4762883_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|4762879_4763164_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|4763154_4763355_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_040181431.1\|4763354_4763870_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
WP_040181433.1\|4763982_4764840_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	61.3
WP_023328071.1\|4764889_4765924_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_040181436.1\|4765933_4766773_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_040181438.1\|4766929_4768657_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
WP_048289843.1\|4768650_4769712_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
WP_040181440.1\|4770556_4771348_+	hypothetical protein	NA	NA	NA	NA
WP_040181442.1\|4771347_4773618_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_040181444.1\|4776507_4777464_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
WP_023329528.1\|4777696_4778263_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
WP_004213098.1\|4778259_4778484_-	hypothetical protein	NA	NA	NA	NA
WP_023329526.1\|4778552_4778825_-	hypothetical protein	NA	NA	NA	NA
WP_040181449.1\|4778840_4779218_-	hypothetical protein	NA	NA	NA	NA
WP_004216643.1\|4779233_4779452_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_020806130.1\|4779472_4779751_-	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004213095.1\|4779871_4780171_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_040181453.1\|4780286_4781270_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
WP_004176549.1\|4781534_4782548_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
4781386:4781403	attR	NA	NA	NA	NA
WP_004150782.1\|4782605_4782707_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004892898.1\|4782706_4782781_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|4782898_4783024_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|4783083_4783347_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|4783477_4784116_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_023302064.1\|4784205_4785120_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4

DBSCAN-SWA_9

5047620 : 5057094

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023302125.1\|5047620_5049342_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_072145323.1\|5049368_5050088_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|5050441_5050660_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|5050790_5053070_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|5053100_5053418_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|5053743_5053965_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|5054041_5055982_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|5055978_5057094_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029591

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection