CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020819	Bordetella bronchiseptica strain D973 chromosome, complete genome	11 crisprs	csa3,DEDDh,DinG,cas3	2	0	2	0

1. NZ_CP020819

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020819_1

• CRISPR_ID: NZ_CP020819_1
• CRISPR_location: 487501-487602
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_1

Consensus_repeat	Method
CTGCGGCCAGGGAGCCTGTCCCCGC	CRISPRCasFinder

spacers of NZ_CP020819_1

>1.1|487526|52|NZ_CP020819|CRISPRCasFinder
CGGGGGAGCGACACCTGCGGCCAGGGAGCCTGTCCCCGCCGGGGAGCGACAT

CRISPR arrays and Neighbor proteins around NZ_CP020819_1

CRISPR arrays

The CRISPR arrays of NZ_CP020819_1

>merge|NZ_CP020819|1|487501-487602|CRISPRCasFinder
CTGCGGCCAGGGAGCCTGTCCCCGCCGGGGGAGCGACACCTGCGGCCAGGGAGCCTGTCCCCGCCGGGGAGCGACATCTGCGGCCAGGGAGCCTGTCCCCGC

>NZ_CP020819|1|1|487501-487602|CRISPRCasFinder
CTGCGGCCAGGGAGCCTGTCCCCGC	CGGGGGAGCGACACCTGCGGCCAGGGAGCCTGTCCCCGCCGGGGAGCGACAT
CTGCGGCCAGGGAGCCTGTCCCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003807743.1|468810_469146_-|YegP-family-protein	unknown	unknown	gnl|CDD|377831
NZ_CP020819.1|WP_099723023.1|479924_486824_+|autotransporter-BatB	unknown	unknown	gnl|CDD|273608
NZ_CP020819.1|WP_015064624.1|495375_496338_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176131
NZ_CP020819.1|WP_010927483.1|486857_487457_+|ureidoglycolate-hydrolase	unknown	unknown	gnl|CDD|380432
NZ_CP020819.1|WP_050484259.1|493498_494053_+|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl|CDD|176248
NZ_CP020819.1|WP_003807753.1|487883_488861_+|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270234
NZ_CP020819.1|WP_003807744.1|469286_470432_-|DSD1-family-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|143487
NZ_CP020819.1|WP_003807750.1|479346_479478_+|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl|CDD|227797
NZ_CP020819.1|WP_033451560.1|471209_472118_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176168
NZ_CP020819.1|WP_003819124.1|470458_471118_-|HAD-IA-family-hydrolase	unknown	unknown	gnl|CDD|319787
NZ_CP020819.1|WP_003807765.1|494144_495398_+|CoA-transferase	unknown	unknown	gnl|CDD|367110
NZ_CP020819.1|WP_015064629.1|472114_472297_+|DUF3596-domain-containing-protein	unknown	unknown	gnl|CDD|371934
NZ_CP020819.1|WP_010925819.1|496490_496967_+|MaoC-family-dehydratase	unknown	unknown	gnl|CDD|239535
NZ_CP020819.1|WP_080704397.1|488874_490449_+|acyl--CoA-ligase	unknown	unknown	gnl|CDD|223395
NZ_CP020819.1|WP_033451571.1|492418_493399_+|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270296
NZ_CP020819.1|WP_003807759.1|492029_492365_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|223672
NZ_CP020819.1|WP_110115584.1|472610_479069_+|BB0450-family-autotransporter	unknown	unknown	gnl|CDD|273608
NZ_CP020819.1|WP_015064627.1|479153_479315_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_010925816.1|491220_491985_+|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|119339
NZ_CP020819.1|WP_003807755.1|490456_491197_+|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003807743.1|468810_469146_-|YegP-family-protein	gnl|CDD|377831	pfam07411, DUF1508, Domain of unknown function (DUF1508). This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.	1.7869e-18
NZ_CP020819.1|WP_099723023.1|479924_486824_+|autotransporter-BatB	gnl|CDD|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.03067e-40
NZ_CP020819.1|WP_015064624.1|495375_496338_-|LysR-family-transcriptional-regulator	gnl|CDD|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.47076e-59
NZ_CP020819.1|WP_010927483.1|486857_487457_+|ureidoglycolate-hydrolase	gnl|CDD|380432	cd20298, cupin_UAH, ureidoglycolate amidohydrolase (UAH) and related proteins, cupin domain. This family includes the cupin-fold protein, ureidoglycolate hydrolase (AllA; EC 3.5.3.19), which is involved in the breakdown of allantoin under aerobic conditions. Allantoin is the key intermediate of nitrogen fixation in bacteria, and its degradation occurs in several steps. AllA is involved in the third step of this pathway which consists of hydrolysis of (S)-ureidoglycolate to yield glyoxylate, ammonia, and CO2. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.23299e-15
NZ_CP020819.1|WP_080704397.1|488874_490449_+|acyl--CoA-ligase	gnl|CDD|223395	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.01509e-133
NZ_CP020819.1|WP_003807744.1|469286_470432_-|DSD1-family-PLP-dependent-enzyme	gnl|CDD|143487	cd06812, PLPDE_III_DSD_D-TA_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible members of this family also form dimers in solution.	0
NZ_CP020819.1|WP_003807750.1|479346_479478_+|entericidin-A/B-family-lipoprotein	gnl|CDD|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	1.86823e-05
NZ_CP020819.1|WP_033451560.1|471209_472118_+|LysR-family-transcriptional-regulator	gnl|CDD|176168	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 9. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.49194e-92
NZ_CP020819.1|WP_003819124.1|470458_471118_-|HAD-IA-family-hydrolase	gnl|CDD|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.90626e-33
NZ_CP020819.1|WP_003807765.1|494144_495398_+|CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	5.83088e-144
NZ_CP020819.1|WP_015064629.1|472114_472297_+|DUF3596-domain-containing-protein	gnl|CDD|371934	pfam12167, Arm-DNA-bind_2, Arm DNA-binding domain. This domain is found at the N-terminus of various phage integrases. The domain binds to DNA.	5.99489e-08
NZ_CP020819.1|WP_003807753.1|487883_488861_+|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl|CDD|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	8.51184e-99
NZ_CP020819.1|WP_010925819.1|496490_496967_+|MaoC-family-dehydratase	gnl|CDD|239535	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.	1.58721e-71
NZ_CP020819.1|WP_050484259.1|493498_494053_+|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl|CDD|176248	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.86669e-58
NZ_CP020819.1|WP_033451571.1|492418_493399_+|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl|CDD|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	7.38592e-131
NZ_CP020819.1|WP_003807759.1|492029_492365_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.70453e-16
NZ_CP020819.1|WP_110115584.1|472610_479069_+|BB0450-family-autotransporter	gnl|CDD|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	6.72849e-45
NZ_CP020819.1|WP_010925816.1|491220_491985_+|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	6.87831e-58
NZ_CP020819.1|WP_003807755.1|490456_491197_+|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.17717e-46

Protein sequences

>NZ_CP020819.1|WP_010927483.1|486857_487457_+|ureidoglycolate-hydrolase
MRLYWRMPTTTPALRPQVLTEAAFAPYGWMLGKPLPAGDDVPRFSNPATDFWQEHVFDTGVGAGRETEVLWVNYRVSQPGFDTLEKHLLTQQAIVPLTGAIVQIVARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLDLVRHLHGEPARESEIVAIVPHGLDLPARPTTEGPSPHGR
>NZ_CP020819.1|WP_099723023.1|479924_486824_+|autotransporter-BatB
MRRLKAQAFEGRRSRPAGHGVAPTLLALALGFQGTAAWANCTTSGSSTTCTAAGGAHGATVGGGSTGHNKQVTVQAGARIEAGDKAAISVGNNSQVQIQGGAVVQSTVNTAASGQYAKTLEAASNNNISIQEGAQLLAKGSASQSSALGLSGAGNTVTNRGTIRADNAAAIWVTANTAGANTIDNYGTIETVLNGGYANAIGSTRNNNATGAGVTVRNHANGRIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQEAGTWTLNGQVGRNDNNLKSTVKVEGGTLALRGDNSGATQGGVLQVSAGATADVTAASAMQSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTLTGNNTHTGKVVVEAGSLSVSAANNLGGAGSSVQLKGGALALKKTIAVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAGKLVTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATRALTLAGNESIDVAATKILSWNGEISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQISRDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASHTVTWNGELSGGGMLRKSGQGTLALAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLTLVRGSLDVARDVTLTWSGAISGAGDLVKTGDGTLALTGVNEYAGQTVLRQGKLRVAREESLGGGALVLENNTVFESAGSYAIGRRVTLKGAPKVATPAGDTLEWRGTVDGDGKLYKQGGGTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAANGDFTSNRQLELTAGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLRLEGVNTYTGGTRLQGGTVQVSRDNNLGQAAGAVTFDGGRLASTGSFATARAATLNNAGQIDTAQGTTLTWNGAIGGKGELRKQGAGTLVLGGANTYQGDTRVEAGTLQVSADANLGQGAVHLHDSRLATTGTFATSRRLELTGRGTVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTEVRAGTLQVSRATNLGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTTLGWEGAIGGTGSLHKKGEGKLVLVKDNHHDGGTTIHAGTLQVSRDANLGSGQSAVTLDGGALAVSAGFSSGREIVVGAGHGALSVAGGHTLQWQGQVGGAGTLTKTGDGTLVLEHDNTHAGGTRVTGGVLRVSRDENLGEAHGMLTLDGGTLSATAGFASRRNATVGNGGGRIVVADSATLDLQGDVAGAGRLVKEGAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLNNSRLHATAGFATGRDATLTGRASIDTDNRATLQWRGTVDGAGTLVKQGAGTLVLDGDNRYAGGTEVNAGTLQVARDANLGAGDVALNGSRLAATASFATARTATLSGAAAIDTADGATLDWNGLLDGDGALVKQGNGTLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDGGALATTADLATGRAATLGAAHGTLDVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQHAGGTLVHGGTLRIARDANLGAAGTAVTLDGGTLATTASLALDRALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTKAGPGMLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLDGGTLLSTASFASARAATLDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVNGSIASPVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVLGGDAVPADRLVLDGGAASGVTPVVVKPQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQPLVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPFYRPEVALYAGTPMLMRMTGTEMLGSYRERAGQTGAVSPEAGATAARGGWARTFGRRFERSAGGEAAPSFDGHLAGAQLGADLYARSSATRHTDAFGVFGGYATVRGDVHGLARGEIQAVGTSTLRATQLGAYWTHTGPGGWYIDTVLAGTRYRQQTKSSAQVGAVSRGWGMTASVEAGYPWQLNPRWRIEPQAQVVYQQLGIANGADRVSTVSYKTPDALTARLGTRLSGQYAYGKAQLRPFMGVSLLHDFTGADTVTFAGAHGVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSDRGWSANLGLRVAY
>NZ_CP020819.1|WP_003807750.1|479346_479478_+|entericidin-A/B-family-lipoprotein
MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ
>NZ_CP020819.1|WP_015064627.1|479153_479315_+|hypothetical-protein
MGAQADRLHGKRYECAFLPTEEDNMKTCIHVLAAVSGDVRDQHETDAEMRDGK
>NZ_CP020819.1|WP_110115584.1|472610_479069_+|BB0450-family-autotransporter
MPQRSQPFNSCTGHSGVRGHGVAPTVLVLALGFHGTAAWANCQTAGSAVTCDASSPNPYTGTVGSGASSGNLTITVGPGARIESGNAHAISVGTGNTISLDGNAQVSNSVTTGGPGNYNAGLNTIEFEHSNTLMIGADARVAAEGTDPAAHAIAFTGRSNAVTNYGTVSSASGAAIWNQFEDDYVNNTIHNYGVIETTANGGDAVVIGSATGNGASGRGMTLYNYAGGRIVGNVVLGEGDDTVRLEAGSTLTGSLDGGAAGTDVLYLEGTSGSGELTQDISNFNEINKIVNGSTWTLAGSLGANSSGKATVVNAYNGELIVTGDNSAATAGSMMTVWAGARLQVNTTSAMAAIQSNGSGVAAFSQQTDGTYAGVLSGSGNFAKEGAGSLTLTGVNTYTGTLQLKEGKVIVSAAENLGGANSMLEFDGGTLNTTSDMTSVRRASIAAGGGTFEVAGGTTLNWTGRVTGNGTLVKEGAGTLALSGFNAHGGTVVNAGTVQISSDYGLGNGALTLNNSRLASTADIYTEAAATVNGNGTFDTANGTTLQWMGDIGGAGALVKTGAGTLLLGGDSLYAGGTVVNAGTVQVFKDASLGGGALTLNNASLASLGSFSTARAATLTGNGTFDTATGTTLGWTGDIGGAGALVKTGQGTLVLGGDNQYGGGTTVNAGAVQVARDANLGAAAGTVALNDARLASTGTFSTARAATLTGNGTFDTATGTTLEWTGDIGGAGALVKTGQGTLVLGGDNQYGGGTTVNAGAVQVARDANLGVAAGTVALNGGTLAASASFSSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALAKEGAGTLVLGNDNQYAGGTVVNAGTVQVARDANLGAAAGAVTLDGGTLAASAGFTSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALIKEGAGTLVLGNDNQYGGGTTVNGGTVQVARDANLGAAAGTVALNDARLASTGTFSTARAATLTGNGTFDTATGTTLGWSGDIGGAGALVKTGQGTLVLGGDNQYAGGTTVNAGAVQVARDANLGAAAGAVALNDARLASTGTFSTARAATLTGNGTFDTADGTTLGWTGDIGGAGALVKTGQGTLVLDGDNQYGGGTTVNAGTVQVSRDANLGAAAGAVALDGGTLAASAGFTSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALAKEGAGTLVLGNDNQYAGGTVVNAGTVQVARDANLGAAAGAVTLDGGTLAASAGFTSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALIKEGAGTLVLGNDNQYGGGTTVNGGTVQVARDANLGAAAGTVALNDARLASTGTFSTARAATLTGNGTFDTATGTTLGWSGDIGGAGALVKTGQGTLVLGGDNQYAGGTTVNAGAVQVARDANLGAAAGAVALNDARLASTGTFSTARAATLTGNGTFDTADGTTLGWTGDIGGAGALVKTGQGTLVLDGDNQYGGGTTVNAGTVQVSRDANLGAAAGAVALNDARLASTGTFSTARAATLTGNGTFDTADGTALGWTGDIGGAGALVKEGLGTLVLDGDNQYGGGTTVNAGTVQVARDANLGAAGGAVRLQGATLASTGSFASARALTLGAAGGTFATLGATTLGWDAAIDGAGGLTKTGAGDLVLSQANTYAGPTLIKEGRLAVNGSIASPVTIDPGGVLGGTGRVLGAVANSGTVAPGNSIGTLTIVGNYAGTGGRLEMEAQLGGDASPADRLVIDGGAATGRTDVVVINQGGLGGQTDQGIPLVVARNGATTTADAFSLASPVAAGAYEYKLLRGTPDGTAANAQNWYLRSGLLVPPAEVPGGGPGGAPEPEFIPFYRPEVALYAGAPMLMRAVGLQALGTYHERTGEQGLMTRDDPDPVRRGAWTRAFGRTFERSGSGDVDPRFDGHVAGLQAGVDLYARRSDQGHADLAGVFGGYANARGHMDGFARGETGAYAGKPDLNAYYIGGYWTHIGPSGWYVDAVLAGTRYEQKAKSSNDLRTEAKGWGVTASVEAGYPVPIGEKWHIEPQAQLVYQRLTVSNGEDDVSSVSYRTPDSVTARLGARLSGQYAYNTTQLRPFMEVSLLRDFAGTDTVTFSGIDRIDSRYQATAVDLTAGLVAQVRKDVGLWGQVGYGKSIGGGDGSDRGWAASLGLRIEY
>NZ_CP020819.1|WP_015064629.1|472114_472297_+|DUF3596-domain-containing-protein
MSGKFEGVRPASESSIEISFVYQGRICVRRLRMKPTAANLKRAAEQRAAIVEAIARGEQA
>NZ_CP020819.1|WP_033451560.1|471209_472118_+|LysR-family-transcriptional-regulator
MLRIEDLQLAAALAQAPSLSAAARALNVTPPALSMRLRKLEAGLGLALAVRSARRLSLTPEGERLAREAAALLAQLQALPESLRRDDSRLTGTLRVAAPFGYGRRHIAPVLARLAQRHPELRVQLDLRETPWPDHQDADAVVHIGAVRDSSWVTRRLADNERWLCASPQYLQDHGMPREPRDLLHHRCICIRENDEDASLWRFRRADAGAAGRKAAETVRIAPAYVSNDGNVARTWAEQGLGLVVRSQWDAEGAVARGALVRVMPQWQLDSAPVMLLVPGRKGRSARVKALLECFDEQAGHA
>NZ_CP020819.1|WP_003819124.1|470458_471118_-|HAD-IA-family-hydrolase
MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYGQLVRDAARATGLPDGAPAALEANWHELPVWDDARSLLRALRPHCKLAVVTNCSRDLGHQAAGLLGVDWDAVVTAEEAGFYKPDPRPYRMALQALQVPAGDAAFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAAALPWLQAFRPAVR
>NZ_CP020819.1|WP_003807744.1|469286_470432_-|DSD1-family-PLP-dependent-enzyme
MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGARGVTVSTLKEAEQFFAAGIADILYAVGMAEHRLPAALALRRRGCDLKIITDNAESARTIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
>NZ_CP020819.1|WP_003807743.1|468810_469146_-|YegP-family-protein
MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQTQA
>NZ_CP020819.1|WP_003807753.1|487883_488861_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGGGTDQFMRIVSERASRVLGQPITILNKPGGSTVIGVNAVIGAAPDGYTLLVSTNTSYTLIPYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYATYGVGSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQALVVLQRTRSQFLPDTPTLVEAGYPEAAENVISYVMAAPKGTPAAVIDKLQKSFAEALRDPGVLAQAKAMRTEAAFKGPAQTQAFVDSQSALFKDIVAKKNIKF
>NZ_CP020819.1|WP_080704397.1|488874_490449_+|acyl--CoA-ligase
MSSLEQQMQPPGQTWWDIIEAHARRFPERDALAHGDGAITYGELVARVRRCAAGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLGALWVGLNPRYQAREMAYVIGHAQPKLVLSVREFEARRYADDLEAALATLAPQARRPELLYYDSQASCDEAMLHALCDAPDAACPAPFDDAAQPCMLVYTSGTTGNPKGVLLSQTALIYRSTVQARTFATRSHPVVINFAPINHIGGMHFRGLSQILADGTIIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQMLIREPSFDMSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLTESCGSVSYIVASDSLEAAAYTVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFTRDGWLKTGDMAQREDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAVDDELYQQVGHAHLILRPDTEVSEPELVQWCRERMANYKVPKRIFVRNSLPMLSIGKVDKIALRQQH
>NZ_CP020819.1|WP_003807755.1|490456_491197_+|IclR-family-transcriptional-regulator
MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTLREIDYLGQDDASGNFVLGDGLIGLMRSSLAQDSKLALFDPALNFVVGRLEETAFCARLWNDEVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLASSTPGLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKSHDLQEIVEVLHSAADLAAAELLNS
>NZ_CP020819.1|WP_010925816.1|491220_491985_+|enoyl-CoA-hydratase/isomerase-family-protein
MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALQLQQDTSVACIVLSGNQNEFSAGIDLGDATRWSLDDKTQLERRAIALRGTRLCKAWEDLPQITIAAVEGMNVGGGIALTLACDWRVMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPARAKQIVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYANALNHLGSHMDVDQAMLCGQTQDAVAVRDRYAR
>NZ_CP020819.1|WP_003807759.1|492029_492365_+|carboxymuconolactone-decarboxylase-family-protein
MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAKTRELIALAVAVTTRCDGCIAVHAKAATDNGATKGEIAEALGVAVALNAGAALVYSARVMDAVDAAQ
>NZ_CP020819.1|WP_033451571.1|492418_493399_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MSRLARLLLAGCCALGAAAPAGAGNWPAGPVTFIVPFPAGGSMDTFSRPIAGQLSKELGVPVVVSNRSGAGGGVGIAAIARAAPDGYTIGMSSVGNMAINPHIYPDLPYSPLKDFTPIGLAGRFVNVLVVNSKIPARNVQELIELDRKKPGNITFASAGNGSTNHLSGELLKQLTHTSFLHVPYRGSGPALADVVAGNVAFMFDTLNTSMPLIESGALRALAVTSAERSPFLPDVPTMNEAGVAGYAKSGEDLWWAIIAPQGVPADVRDKLNAALNKALGSPALQAQVRAQRVETLTSTPDALQTILRDDYNRWGGIVREAGVKLD
>NZ_CP020819.1|WP_050484259.1|493498_494053_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MPCLVRFEESSMFDALLLTQNDDRAIVAQRVQLDEARLPDGDVLVDIAWSTVNYKDALAITGRIPIVRQFPMVPGIDFAGTVLESHDSRHRAGDAVLLDGWGLGQAHWGGLARKARVKADWLVPMPGGMDARRAEAWGRLASELPAEITDANTRAITLDEVVDLAPRLLAGQVRGRVVVDVGAG
>NZ_CP020819.1|WP_003807765.1|494144_495398_+|CoA-transferase
MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPKGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLTALQARNHTGLGQVVDIGLYESVFRLLDEIAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLASAMGKPELAGDARFATAAARAENRPAINAQVAAWSARFDLQALLDLCRDEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPAPVPRLSGTPARFLRAGGALGQDNAGVFEELLGVCGERLAALRQAGVV
>NZ_CP020819.1|WP_015064624.1|495375_496338_-|LysR-family-transcriptional-regulator
MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRLTAEGTQLLESARRAVHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREEADFGIGPIMELPEFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINTKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLIHGPSGRRTARATTRRPPA
>NZ_CP020819.1|WP_010925819.1|496490_496967_+|MaoC-family-dehydratase
MLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPAHCDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPVHPGDTVYARSQVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGARQ

Crispr_ID: NZ_CP020819_2

• CRISPR_ID: NZ_CP020819_2
• CRISPR_location: 1003913-1003997
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: csa3

Consensus repeat of NZ_CP020819_2

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

spacers of NZ_CP020819_2

>2.1|1003936|39|NZ_CP020819|CRISPRCasFinder
ATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAG

CRISPR arrays and Neighbor proteins around NZ_CP020819_2

CRISPR arrays

The CRISPR arrays of NZ_CP020819_2

>merge|NZ_CP020819|2|1003913-1003997|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAGTGTGCCTGTCCCCGCGGGGACAG

>NZ_CP020819|2|2|1003913-1003997|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAG
TGTGCCTGTCCCCGCGGGGACAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003808562.1|994034_994541_-|SRPBCC-family-protein	unknown	unknown	gnl|CDD|176905
NZ_CP020819.1|WP_003808563.1|994537_994876_-|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|223713
NZ_CP020819.1|WP_003808574.1|999734_1000244_-|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl|CDD|234674
NZ_CP020819.1|WP_003808599.1|1011177_1011642_+|transcription-antitermination-factor-NusB	unknown	unknown	gnl|CDD|234686
NZ_CP020819.1|WP_003808570.1|999428_999680_-|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl|CDD|319871
NZ_CP020819.1|WP_003808568.1|998214_999432_-|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl|CDD|281578
NZ_CP020819.1|WP_003808594.1|1007677_1008505_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP020819.1|WP_003808600.1|1011681_1012698_+|thiamine-phosphate-kinase	unknown	unknown	gnl|CDD|235583
NZ_CP020819.1|WP_003808598.1|1010642_1011170_+|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606
NZ_CP020819.1|WP_003808591.1|1006521_1007529_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270291
NZ_CP020819.1|WP_003808580.1|1002206_1003805_-|CYTH-and-CHAD-domain-containing-protein	unknown	unknown	gnl|CDD|143624
NZ_CP020819.1|WP_003808566.1|995304_997824_+|AsmA-family-protein	unknown	unknown	gnl|CDD|236772
NZ_CP020819.1|WP_003808589.1|1005748_1006519_-|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213223
NZ_CP020819.1|WP_003808584.1|1004043_1004865_-|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl|CDD|273441
NZ_CP020819.1|WP_003808587.1|1004861_1005752_-|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl|CDD|273441
NZ_CP020819.1|WP_010927717.1|1008510_1009308_-|HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|273651
NZ_CP020819.1|WP_003808597.1|1009453_1010629_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl|CDD|237587
NZ_CP020819.1|WP_003808577.1|1000264_1000885_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl|CDD|223813
NZ_CP020819.1|WP_080603781.1|1000954_1002160_+|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl|CDD|236686
NZ_CP020819.1|WP_003808567.1|997820_998207_+|hypothetical-protein	unknown	unknown	gnl|CDD|281474

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP020819.1|WP_003808563.1|994537_994876_-|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	3.6e-19	64.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003808562.1|994034_994541_-|SRPBCC-family-protein	gnl|CDD|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.32648e-83
NZ_CP020819.1|WP_003808563.1|994537_994876_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.51065e-15
NZ_CP020819.1|WP_003808574.1|999734_1000244_-|pantetheine-phosphate-adenylyltransferase	gnl|CDD|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.03384e-101
NZ_CP020819.1|WP_003808599.1|1011177_1011642_+|transcription-antitermination-factor-NusB	gnl|CDD|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.22823e-51
NZ_CP020819.1|WP_003808570.1|999428_999680_-|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl|CDD|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	1.53234e-06
NZ_CP020819.1|WP_003808568.1|998214_999432_-|benzoate/H(+)-symporter-BenE-family-transporter	gnl|CDD|281578	pfam03594, BenE, Benzoate membrane transport protein.	3.72852e-112
NZ_CP020819.1|WP_003808594.1|1007677_1008505_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.15813e-52
NZ_CP020819.1|WP_003808600.1|1011681_1012698_+|thiamine-phosphate-kinase	gnl|CDD|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.95453e-132
NZ_CP020819.1|WP_003808598.1|1010642_1011170_+|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	4.04555e-65
NZ_CP020819.1|WP_003808591.1|1006521_1007529_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl|CDD|270291	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.92107e-151
NZ_CP020819.1|WP_003808580.1|1002206_1003805_-|CYTH-and-CHAD-domain-containing-protein	gnl|CDD|143624	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized.	5.26778e-56
NZ_CP020819.1|WP_003808566.1|995304_997824_+|AsmA-family-protein	gnl|CDD|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	2.80816e-30
NZ_CP020819.1|WP_003808589.1|1005748_1006519_-|phosphonate-ABC-transporter-ATP-binding-protein	gnl|CDD|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.7095e-115
NZ_CP020819.1|WP_003808584.1|1004043_1004865_-|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl|CDD|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.08607e-97
NZ_CP020819.1|WP_003808587.1|1004861_1005752_-|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl|CDD|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.14802e-90
NZ_CP020819.1|WP_010927717.1|1008510_1009308_-|HAD-IIB-family-hydrolase	gnl|CDD|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI|TC0379 and OMNI|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	7.51884e-15
NZ_CP020819.1|WP_003808597.1|1009453_1010629_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl|CDD|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP020819.1|WP_003808577.1|1000264_1000885_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl|CDD|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.53382e-57
NZ_CP020819.1|WP_080603781.1|1000954_1002160_+|signal-recognition-particle-docking-protein-FtsY	gnl|CDD|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	2.49182e-175
NZ_CP020819.1|WP_003808567.1|997820_998207_+|hypothetical-protein	gnl|CDD|281474	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.	7.15282e-08

Protein sequences

>NZ_CP020819.1|WP_003808580.1|1002206_1003805_-|CYTH-and-CHAD-domain-containing-protein
MSEQELKLHVPAAARAAVQQQIQQRQAARIRLHAMYFDTPGRELARARIAIRLRQEGRDWVQTLKMPGANAISRVEINHPRPGPVLDLSVYAGTEAQAALTAIKGELGLRYETDVQRLFCKVRGRHGTVELAYDTGVLRAGALELPISELEFELVSGRPAAIFAMARSWLQRHGLVLDARSKSERGDALAQLAHDLAAAPGEADDAARATRDQQAVAGFWAPRNAGAVKLDESMTPMQAMAAVAAECVDHIARNAAVLAEVDTLGVYRAGTPEHVHQLRVGVRRLRSAWRLFDGWVADPSETLAQGARTHFSAFGMARDQDVLADTIMPLLARAGMPALPAEAAPSNDNAQSLAADRAFQGWLLELLAWSLDVPPPPAPAATAEAAPASPTIIPLAPPAEAAPPALRKRLTGRLRRWHLKVIDEGLRFGALELEARHELRKRVKRLRYGLSFAESLLPAARLRTYRKQLARVQDLLGEINDLAVARDYYQAALQAHPQAWFAVGWIGARLDGLTPQAQEAFDQLARAKPFWK
>NZ_CP020819.1|WP_080603781.1|1000954_1002160_+|signal-recognition-particle-docking-protein-FtsY
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPSVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>NZ_CP020819.1|WP_003808577.1|1000264_1000885_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>NZ_CP020819.1|WP_003808574.1|999734_1000244_-|pantetheine-phosphate-adenylyltransferase
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQSAQGGA
>NZ_CP020819.1|WP_003808570.1|999428_999680_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA
>NZ_CP020819.1|WP_003808568.1|998214_999432_-|benzoate/H(+)-symporter-BenE-family-transporter
MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTGLVGVPFDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVTLGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>NZ_CP020819.1|WP_003808567.1|997820_998207_+|hypothetical-protein
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>NZ_CP020819.1|WP_003808566.1|995304_997824_+|AsmA-family-protein
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLKQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIGQLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>NZ_CP020819.1|WP_003808563.1|994537_994876_-|helix-turn-helix-transcriptional-regulator
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>NZ_CP020819.1|WP_003808562.1|994034_994541_-|SRPBCC-family-protein
MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARNMQQAS
>NZ_CP020819.1|WP_003808584.1|1004043_1004865_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>NZ_CP020819.1|WP_003808587.1|1004861_1005752_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>NZ_CP020819.1|WP_003808589.1|1005748_1006519_-|phosphonate-ABC-transporter-ATP-binding-protein
MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQGSVNGIPVLVNIHDVELARRYANRIVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE
>NZ_CP020819.1|WP_003808591.1|1006521_1007529_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ
>NZ_CP020819.1|WP_003808594.1|1007677_1008505_-|IclR-family-transcriptional-regulator
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>NZ_CP020819.1|WP_010927717.1|1008510_1009308_-|HAD-IIB-family-hydrolase
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG
>NZ_CP020819.1|WP_003808597.1|1009453_1010629_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND
>NZ_CP020819.1|WP_003808598.1|1010642_1011170_+|6,7-dimethyl-8-ribityllumazine-synthase
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDEDEDFDDEEDDGR
>NZ_CP020819.1|WP_003808599.1|1011177_1011642_+|transcription-antitermination-factor-NusB
MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>NZ_CP020819.1|WP_003808600.1|1011681_1012698_+|thiamine-phosphate-kinase
MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP

Crispr_ID: NZ_CP020819_3

• CRISPR_ID: NZ_CP020819_3
• CRISPR_location: 1530026-1530112
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_3

Consensus_repeat	Method
AGTGTGCCTGTCCCCGCAGGGACAG	CRISPRCasFinder

spacers of NZ_CP020819_3

>3.1|1530051|37|NZ_CP020819|CRISPRCasFinder
ATACCGTCTTGGCGGGCTAGCGTCGATGGCGTACGGC

CRISPR arrays and Neighbor proteins around NZ_CP020819_3

CRISPR arrays

The CRISPR arrays of NZ_CP020819_3

>merge|NZ_CP020819|3|1530026-1530112|CRISPRCasFinder
AGTGTGCCTGTCCCCGCAGGGACAGATACCGTCTTGGCGGGCTAGCGTCGATGGCGTACGGCAGTGTGCCTGTCCCCGCGGGGACAG

>NZ_CP020819|3|3|1530026-1530112|CRISPRCasFinder
AGTGTGCCTGTCCCCGCAGGGACAG	ATACCGTCTTGGCGGGCTAGCGTCGATGGCGTACGGC
AGTGTGCCTGTCCCCGCGGGGACAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_033451938.1|1532827_1534537_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|224099
NZ_CP020819.1|WP_003809596.1|1530798_1531698_-|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_CP020819.1|WP_003809588.1|1525805_1529048_+|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl|CDD|235393
NZ_CP020819.1|WP_003809603.1|1534613_1535936_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270236
NZ_CP020819.1|WP_003809610.1|1536487_1537801_+|pyrimidine-permease	unknown	unknown	gnl|CDD|132655
NZ_CP020819.1|WP_003809590.1|1529198_1529963_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|235910
NZ_CP020819.1|WP_076879800.1|1524697_1525795_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl|CDD|237139
NZ_CP020819.1|WP_003809572.1|1518354_1518681_+|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl|CDD|234669
NZ_CP020819.1|WP_003809574.1|1518730_1519339_+|recombination-protein-RecR	unknown	unknown	gnl|CDD|234616
NZ_CP020819.1|WP_033451942.1|1537831_1539469_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|185001
NZ_CP020819.1|WP_003809618.1|1540923_1541526_-|YhbY-family-RNA-binding-protein	unknown	unknown	gnl|CDD|198171
NZ_CP020819.1|WP_033451941.1|1536036_1536354_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_003809615.1|1540092_1540569_+|transcription-elongation-factor-GreA	unknown	unknown	gnl|CDD|234693
NZ_CP020819.1|WP_033451936.1|1530143_1530788_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NZ_CP020819.1|WP_003809576.1|1519413_1520664_+|CoA-transferase	unknown	unknown	gnl|CDD|367110
NZ_CP020819.1|WP_003809582.1|1522615_1523410_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223673
NZ_CP020819.1|WP_003809584.1|1523451_1524435_-|transaldolase	unknown	unknown	gnl|CDD|235381
NZ_CP020819.1|WP_003809581.1|1521802_1522612_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224041
NZ_CP020819.1|WP_003809599.1|1531745_1532831_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226361
NZ_CP020819.1|WP_003809579.1|1520769_1521810_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270367

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_033451938.1|1532827_1534537_-|iron-ABC-transporter-permease	gnl|CDD|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	3.76932e-89
NZ_CP020819.1|WP_003809596.1|1530798_1531698_-|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.08863e-33
NZ_CP020819.1|WP_003809588.1|1525805_1529048_+|carbamoyl-phosphate-synthase-large-subunit	gnl|CDD|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP020819.1|WP_003809603.1|1534613_1535936_-|extracellular-solute-binding-protein	gnl|CDD|270236	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. On the other hand, thiamin is an essential cofactor in all living systems. Thiamin diphosphate (ThDP)-dependent enzymes play an important role in carbohydrate and branched-chain amino acid metabolism. Most prokaryotes, plants, and fungi can synthesize thiamin, but it is not synthesized in vertebrates. These periplasmic domains have high affinities for their respective substrates and serve as the primary receptor for transport. After binding iron and thiamine with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.02894e-39
NZ_CP020819.1|WP_003809610.1|1536487_1537801_+|pyrimidine-permease	gnl|CDD|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP020819.1|WP_003809590.1|1529198_1529963_+|SDR-family-oxidoreductase	gnl|CDD|235910	PRK07024, PRK07024, SDR family oxidoreductase.	4.78988e-141
NZ_CP020819.1|WP_076879800.1|1524697_1525795_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl|CDD|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP020819.1|WP_003809572.1|1518354_1518681_+|YbaB/EbfC-family-nucleoid-associated-protein	gnl|CDD|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	6.20353e-44
NZ_CP020819.1|WP_003809574.1|1518730_1519339_+|recombination-protein-RecR	gnl|CDD|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.18255e-106
NZ_CP020819.1|WP_033451942.1|1537831_1539469_-|HAMP-domain-containing-protein	gnl|CDD|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.87381e-117
NZ_CP020819.1|WP_003809618.1|1540923_1541526_-|YhbY-family-RNA-binding-protein	gnl|CDD|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	1.06237e-30
NZ_CP020819.1|WP_003809615.1|1540092_1540569_+|transcription-elongation-factor-GreA	gnl|CDD|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	7.10406e-83
NZ_CP020819.1|WP_033451936.1|1530143_1530788_-|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.41773e-70
NZ_CP020819.1|WP_003809576.1|1519413_1520664_+|CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	6.00173e-142
NZ_CP020819.1|WP_003809582.1|1522615_1523410_+|ABC-transporter-permease	gnl|CDD|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	8.9481e-72
NZ_CP020819.1|WP_003809584.1|1523451_1524435_-|transaldolase	gnl|CDD|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP020819.1|WP_003809581.1|1521802_1522612_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.56701e-115
NZ_CP020819.1|WP_003809599.1|1531745_1532831_-|ABC-transporter-ATP-binding-protein	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.76041e-148
NZ_CP020819.1|WP_003809579.1|1520769_1521810_+|ABC-transporter-substrate-binding-protein	gnl|CDD|270367	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplamic-binding protein Cae31940 which is phylogenetically similar to the ThiY/THI5 family. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are THI5, which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes, and periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport. After binding the ligand, They interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.02712e-131

Protein sequences

>NZ_CP020819.1|WP_003809590.1|1529198_1529963_+|SDR-family-oxidoreductase
MQHVFITGASSGLGQALARRYAADGARLGLLGRRAQALEALASSLPGQHRCYAVDVRDRAALHAAAQDFIAHCGGRVDVVIASAGVSAGTLTEAGEDYAVFKEIVDTNLLATVATFEPFIAGMRAARAGRLVGIASVAGVRGLPGAGAYSASKAAVATYCESLRLELAQAGVRVVTIAPGYVKTAMTAHNPYAMPFLMEADAFAGRAHAAIARGVSYRVIPWQMGVVAKLMRLLPDAVYDRLARDAPRKPRRGQ
>NZ_CP020819.1|WP_003809588.1|1525805_1529048_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLPTMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLDELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLTRIDPWFLAQIKEIVDIELALEQKTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRKLRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDRKKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMAGRTLADQGITREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFVKSQLAAGVRLPDSGTVFISVRNQDKPRAVEVARGLHNLGFKLVATRGTAAEIEAAGIPVQVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRITFFTTIAGARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ
>NZ_CP020819.1|WP_076879800.1|1524697_1525795_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MADGTIFRGVSIGAPGHTVAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVEANRVYAAGLVVRDCPARVSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGSCILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADWTQGTWELGSGYTQPAQDRFHVVAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVDATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNHGFAVDAATLPANTRVTHISLFDGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFISLMAGQK
>NZ_CP020819.1|WP_003809584.1|1523451_1524435_-|transaldolase
MSAQIRLMPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQEAYRPLLVQTARAHQGASPAEITDRLLVAFGRQILDIVPGRVSTEVDARLSFDTRATVERARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAACADAGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMGASFRNVDQILALAGCDLLTISPELLTRLSQTEGEVPAALSPQAGHDDADAVRLDGGEVAFRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA
>NZ_CP020819.1|WP_003809582.1|1522615_1523410_+|ABC-transporter-permease
MSKLIKPGSLSLRFWQLLLFVVILLVWHAASRDPKVAFFFGEPLKVWGRIWAWFVSNGDIYGHLWVTLSETVLAFFIGTVSGLGFGLWLGLSPGASAILDPYIKAANSMPRVILAPIFGMWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPTLLDNARMLGARRRQLLRHVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSASGVGYLILQAEGTFDVNTVFAGIVVLTAFALLLDYVVGMGEKRLMKWQPKSGETEKL
>NZ_CP020819.1|WP_003809581.1|1521802_1522612_+|ABC-transporter-ATP-binding-protein
MAEAALSLEGITCTFIAREDRSRRYTAVQDTSLAVAPGEFVSVVGPTGCGKSTLLNVGAGLLAPSSGTVRVFGQALAGINERAGYMFQGEALLPWRSALENVVAGLDFAGVPRAQADERGREWMRRVGLGGFETRYPHQMSGGMRKRVMLAQTLIRDPDIILMDEPFSALDIQTRQLMENEVLDLWMAKRKAVLFITHDLDEAIAMSDRVIVLSAGPGTHPIGEFAIDLPRPRDVAEVRTHPRFVELHAAIWGVLREEVLKGYAQQKRA
>NZ_CP020819.1|WP_003809579.1|1520769_1521810_+|ABC-transporter-substrate-binding-protein
MSVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPNTAQALTNAIVRADKWIQKAGADEIAKAVPEGYLLGDPAVYKAAIGKSMEGLSPDGVIPEDGAATALKALAAFVPDFDAAKVDPAKAWTNEYTRRANEKYPNG
>NZ_CP020819.1|WP_003809576.1|1519413_1520664_+|CoA-transferase
MSALKGLKVLELGTLIAGPFAARMFGEFGAEVIKVETPHGPDGTGGGDPIRSWRHLHRGDSLWWTVQARNKQSIALNLKDPRAQEIARRLALEADVVVENYRPGVLEKWGLGYEQLRAINPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGLRYVSGHPDRPPVRVGISIGDSLAALHGVIGALMALRHRDATGGRWNGATGEQCQAGQGQMVDVALYESVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIAGNGDAIFHRLMLAIGRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRAADVPVGKIYSVADMFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRLGEHTEEVLRSLGYDAAAIAELAQTGAIGR
>NZ_CP020819.1|WP_003809574.1|1518730_1519339_+|recombination-protein-RecR
MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGADMLGRALSGAVQHLRHCARCNSFTEDEVCATCANPKRDPGLLCIVETPADQNMIESSHGYRGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFLGDALSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST
>NZ_CP020819.1|WP_003809572.1|1518354_1518681_+|YbaB/EbfC-family-nucleoid-associated-protein
MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTMTCRHDVKRVAIDPSLLGEDKDMLEDLVAAAFNDALRKAEATSQEKMASVTAGMPLPPGMKLPF
>NZ_CP020819.1|WP_033451936.1|1530143_1530788_-|histidine-phosphatase-family-protein
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALESGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDIIWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>NZ_CP020819.1|WP_003809596.1|1530798_1531698_-|LysR-family-transcriptional-regulator
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKSEARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQRLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISMIQKIWKPGAAVAT
>NZ_CP020819.1|WP_003809599.1|1531745_1532831_-|ABC-transporter-ATP-binding-protein
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>NZ_CP020819.1|WP_033451938.1|1532827_1534537_-|iron-ABC-transporter-permease
MTSTGTFRLPAGPALAALLVLAFLALFLVFPVGTVFYTAFVNADGSFTLGHFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGTLLIQTLGVLPLIMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILMNLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESVLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAIGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS
>NZ_CP020819.1|WP_003809603.1|1534613_1535936_-|extracellular-solute-binding-protein
MQALRPVLAAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRETPAGQRPEVFWASAPDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGHVGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDGVNNGQFGAGPVIDFFGLSSKYSKFPVDFVYPSETAIVPANIALIEGAKNTEEGKKFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFDADLSQARYYVVQSLFDQTITFRLKELQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAQRAADPAFLKLFAGNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>NZ_CP020819.1|WP_033451941.1|1536036_1536354_-|hypothetical-protein
MTVSSVSSRISAGAFDQYARQLRDRAAASGAKDEAGSPAAEALQALQRRLAAIMRQMRQVRESNATAEQQARQLQDLNRQAFAIQGQIQKLLEEQLRLAQRLAAR
>NZ_CP020819.1|WP_003809610.1|1536487_1537801_+|pyrimidine-permease
MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRVPSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIGLNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWFGLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRYVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVLGAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>NZ_CP020819.1|WP_033451942.1|1537831_1539469_-|HAMP-domain-containing-protein
MPMLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAALRARVALLEALANLQANHLDPVATLHQQAGAAQRQAATQFQRYVDVPKEPAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMNRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVARWSAIALAALGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANAIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQQVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNAALVEQAAAAATAMEEQARHLAAAAAVFRTQGGAIIDIAAAPLAGPAGGHAALPPAAAR
>NZ_CP020819.1|WP_003809615.1|1540092_1540569_+|transcription-elongation-factor-GreA
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>NZ_CP020819.1|WP_003809618.1|1540923_1541526_-|YhbY-family-RNA-binding-protein
MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR

Crispr_ID: NZ_CP020819_4

• CRISPR_ID: NZ_CP020819_4
• CRISPR_location: 2351665-2351826
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_4

Consensus_repeat	Method
GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCCCAGCCGCTTCCGCCCCG	CRISPRCasFinder

spacers of NZ_CP020819_4

>4.1|2351719|54|NZ_CP020819|CRISPRCasFinder
ACCAGTGCCGGCCAAGGCGGTGCCGATGGTGCCTCCCAAGGTGGAGGTCGCCAA

CRISPR arrays and Neighbor proteins around NZ_CP020819_4

CRISPR arrays

The CRISPR arrays of NZ_CP020819_4

>merge|NZ_CP020819|4|2351665-2351826|CRISPRCasFinder
GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCCCAGCCGCTTCCGCCCCGACCAGTGCCGGCCAAGGCGGTGCCGATGGTGCCTCCCAAGGTGGAGGTCGCCAAGGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCTCAGCCGCTTCCGCCCCG

>NZ_CP020819|4|4|2351665-2351826|CRISPRCasFinder
GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCCCAGCCGCTTCCGCCCCG	ACCAGTGCCGGCCAAGGCGGTGCCGATGGTGCCTCCCAAGGTGGAGGTCGCCAA
GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCTCAGCCGCTTCCGCCCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_033452384.1|2359967_2361269_-|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl|CDD|129868
NZ_CP020819.1|WP_138142578.1|2353668_2354403_+|molecular-chaperone-FimB	unknown	unknown	gnl|CDD|225663
NZ_CP020819.1|WP_003811089.1|2361261_2361762_-|TRAP-transporter-small-permease	unknown	unknown	gnl|CDD|377284
NZ_CP020819.1|WP_003811091.1|2361768_2362854_-|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270320
NZ_CP020819.1|WP_003811054.1|2328107_2329016_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_CP020819.1|WP_003811061.1|2331134_2332418_+|TRAP-transporter-large-permease	unknown	unknown	gnl|CDD|224509
NZ_CP020819.1|WP_003811063.1|2332440_2333160_+|DUF2848-domain-containing-protein	unknown	unknown	gnl|CDD|371339
NZ_CP020819.1|WP_003811078.1|2352813_2353419_+|fimbrial-protein	unknown	unknown	gnl|CDD|339870
NZ_CP020819.1|WP_015063873.1|2354465_2357087_+|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl|CDD|225729
NZ_CP020819.1|WP_003811094.1|2364297_2364789_-|TRAP-transporter-small-permease	unknown	unknown	gnl|CDD|377284
NZ_CP020819.1|WP_010926710.1|2334588_2335422_+|putative-hydro-lyase	unknown	unknown	gnl|CDD|180100
NZ_CP020819.1|WP_110115596.1|2357100_2358198_+|fimbrial-protein	unknown	unknown	gnl|CDD|226069
NZ_CP020819.1|WP_003811059.1|2330517_2331138_+|TRAP-transporter-small-permease	unknown	unknown	gnl|CDD|377284
NZ_CP020819.1|WP_003811069.1|2335555_2336431_+|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|376350
NZ_CP020819.1|WP_033452387.1|2358190_2359942_+|filamentous-hemagglutinin-transporter-protein-FhaC	unknown	unknown	gnl|CDD|377148
NZ_CP020819.1|WP_010926712.1|2329358_2330408_+|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270320
NZ_CP020819.1|WP_033452391.1|2333220_2334570_+|amidase	unknown	unknown	gnl|CDD|235921
NZ_CP020819.1|WP_010930609.1|2340202_2340832_-|virulence-factors-two-component-system-response-regulator-BvgA	unknown	unknown	gnl|CDD|225107
NZ_CP020819.1|WP_003811072.1|2336477_2340194_-|virulence-factors-two-component-system-sensor-histidine-kinase-BvgS	unknown	unknown	gnl|CDD|182169
NZ_CP020819.1|WP_003811093.1|2363006_2364305_-|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl|CDD|129868

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_033452384.1|2359967_2361269_-|TRAP-transporter-large-permease-subunit	gnl|CDD|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.12016e-125
NZ_CP020819.1|WP_138142578.1|2353668_2354403_+|molecular-chaperone-FimB	gnl|CDD|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	2.05728e-76
NZ_CP020819.1|WP_003811089.1|2361261_2361762_-|TRAP-transporter-small-permease	gnl|CDD|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.01797e-16
NZ_CP020819.1|WP_003811091.1|2361768_2362854_-|TRAP-transporter-substrate-binding-protein	gnl|CDD|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.94455e-122
NZ_CP020819.1|WP_003811054.1|2328107_2329016_+|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.89176e-42
NZ_CP020819.1|WP_003811061.1|2331134_2332418_+|TRAP-transporter-large-permease	gnl|CDD|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	8.16313e-87
NZ_CP020819.1|WP_003811063.1|2332440_2333160_+|DUF2848-domain-containing-protein	gnl|CDD|371339	pfam11010, DUF2848, Protein of unknown function (DUF2848). This bacterial family of proteins has no known function.	4.73124e-91
NZ_CP020819.1|WP_003811078.1|2352813_2353419_+|fimbrial-protein	gnl|CDD|339870	pfam16970, FimA, Type-1 fimbrial protein, A. FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.	7.01167e-69
NZ_CP020819.1|WP_015063873.1|2354465_2357087_+|fimbrial-biogenesis-outer-membrane-usher-protein	gnl|CDD|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP020819.1|WP_003811094.1|2364297_2364789_-|TRAP-transporter-small-permease	gnl|CDD|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.90947e-16
NZ_CP020819.1|WP_010926710.1|2334588_2335422_+|putative-hydro-lyase	gnl|CDD|180100	PRK05463, PRK05463, putative hydro-lyase.	0
NZ_CP020819.1|WP_110115596.1|2357100_2358198_+|fimbrial-protein	gnl|CDD|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.01327e-07
NZ_CP020819.1|WP_003811059.1|2330517_2331138_+|TRAP-transporter-small-permease	gnl|CDD|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.22416e-16
NZ_CP020819.1|WP_003811069.1|2335555_2336431_+|EAL-domain-containing-protein	gnl|CDD|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	1.53847e-49
NZ_CP020819.1|WP_033452387.1|2358190_2359942_+|filamentous-hemagglutinin-transporter-protein-FhaC	gnl|CDD|377148	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB. This family represents a group of sequences that are related to ShlB from Serratia marcescens. ShlB is an outer membrane protein pore involved in the Type Vb or Two-partner secretion system where it is functions to secrete and activate the haemolysin ShlA. The activation of ShlA occurs during secretion when ShlB imposes a conformational change in the inactive haemolysin to form the active protein.	3.83104e-92
NZ_CP020819.1|WP_010926712.1|2329358_2330408_+|TRAP-transporter-substrate-binding-protein	gnl|CDD|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.91168e-120
NZ_CP020819.1|WP_033452391.1|2333220_2334570_+|amidase	gnl|CDD|235921	PRK07056, PRK07056, amidase; Provisional.	0
NZ_CP020819.1|WP_010930609.1|2340202_2340832_-|virulence-factors-two-component-system-response-regulator-BvgA	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.75971e-63
NZ_CP020819.1|WP_003811072.1|2336477_2340194_-|virulence-factors-two-component-system-sensor-histidine-kinase-BvgS	gnl|CDD|182169	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS.	1.19298e-146
NZ_CP020819.1|WP_003811093.1|2363006_2364305_-|TRAP-transporter-large-permease-subunit	gnl|CDD|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.23324e-98

Protein sequences

>NZ_CP020819.1|WP_010930609.1|2340202_2340832_-|virulence-factors-two-component-system-response-regulator-BvgA
MYNKVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLVLTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNLA
>NZ_CP020819.1|WP_003811072.1|2336477_2340194_-|virulence-factors-two-component-system-sensor-histidine-kinase-BvgS
MPAPHRLYPRSLICLAQALLAWALLAWAPAQASQELTLVGKAAVPDVEITLDGDDWRWLARKRVLTLGVYAPDIPPFDVTYDERYEGLTADYMAIIAHNLGVQAKVLRYPTREQAVGALESGQIDLIGTVNGIEGRLQSLRLSVPYAADHPVLVMPIGARRAPPADLAGQRLAVDANYLPRETLQQAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTSHLVSQSYFNDVRVVAPAQIVTGGESFGVRADNTRLLRVVNAVLEAIPASERRSLIYRWGLGSSISLDFARPAYSAREQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFQIIGVDTVEELIAKLRSGEADMAGALFVNAARESVLSFSRPYVRNGLVIVTRQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATARGQTELISILNKALYSISNDELASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDLRLTMVEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAAARAALPTPPSPQAAAPATHDATPAAFSAESILALTQNDEALIRQLLEEVIRTNRADVDQLQKLHQQADWPKVSDMAHRLAGGARVVDAKAMIDTALALEKKAQGQAGPSPEIDGMVRTLAAQSAALETQLRAWLEQRPHQGQP
>NZ_CP020819.1|WP_003811069.1|2335555_2336431_+|EAL-domain-containing-protein
MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRDEFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVPEHCYMAALVRDNLHIALAQQLLAQVFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPSLLQSPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGRAGEACRAIAQQASAQRIPVMATGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWYYRREMPPNYP
>NZ_CP020819.1|WP_010926710.1|2334588_2335422_+|putative-hydro-lyase
MRRPVPYHRVAAIMTILSLAGAGHQARLDARGGMLTGPTANLAPGHVQANLAILPQAVAGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDIDIRTDVPRYRVWRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNIATHPAGPFSGPLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPDYGDAVEIRAGEIPVFWACGVTPQSVVAAVRPEFCITHAPGHMLVTDLLNSRLAAF
>NZ_CP020819.1|WP_033452391.1|2333220_2334570_+|amidase
MLPTLTQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVYAEQARAEARAADALRGAGVTRSAIDGLPLSIKDLFDVAGETTMAGSVARQDEPAAVRDAVVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAAVSVTDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVRCCATLDAILAGGDDADIPAPAALRGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGACIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAADRYDPRVVARIRRGADMSAADYIDLLAARQAWRARVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNPTLINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRRVLAIGMAIEDLLGG
>NZ_CP020819.1|WP_003811063.1|2332440_2333160_+|DUF2848-domain-containing-protein
MAAARFTARYQMKIAFQVQADGATRTVETEIRNLVVAGWAGRDRAAIEHHIEELAELGVPRPSSVPLYYRIAENQLSQAGRVQAVGPDSSGEAETFVFSVGGELYVSLASDHTDRKLEAHSVALSKQVCVKPVASDAWRHADVAEYWDELVLRSYIVENGAEVLYQEGTLASLRTPQDLIAGYTQGQASLPEGTGMTCGTVAAIGGIRASTTFIMELHDPRRQRTLRHRYDVEVLPEIA
>NZ_CP020819.1|WP_003811061.1|2331134_2332418_+|TRAP-transporter-large-permease
MIATALILLLVLIGISIPVGAALGVLGLILDPLYSMLPLTRAIGEVTWSANNEFLLVAIPLFIMLGEVLLRAGFAERMYAAMSLWLSWLPGGLMHANIGASTLFSATSGSSVATAATVGTVAIPQIKKYGYNEPLFLGSLAAGGTLGILIPPSINLVIYGVLTNSSVPKLYLAGIIPGFAMAALFMMTVVVACVAKPSWGGHRIQASWAQRIASLVHLGPPMAIFFLVVGSIYAGLATPTEAAALGVLGALILAAWFRRLTWTMLREAIEGTMRSTAMIMLIVLAASFLNFVMSATGLTDALVQSITGLGLSPGWMLLIVVIFYLVLGCFMETLSMMITTIPIVAPIMIALGYDPIWLGILIIVLVEAALITPPVGLNLFVVQSLRKSGSMTAVINGALPFVLAMFVMLALLAFFPDLALWLPRVFG
>NZ_CP020819.1|WP_003811059.1|2330517_2331138_+|TRAP-transporter-small-permease
MTRSEHFRALGGLLRRAESLSRLAVWVGGALTIASVLLISFDVLARKFFGFTTGGADELSSYAFAISTSWALAFATLQRANVRVDVVYQYLPVRVSAVLDWIALVALGVFMVFMTYYAYEVVQTSWAQKSAANTPLATPLWIPQGLWALGLAWMCVTVALMLVRASAALVTGDLDLVKEICGVRSAQEEAEEEAAAGERMVKGASA
>NZ_CP020819.1|WP_010926712.1|2329358_2330408_+|TRAP-transporter-substrate-binding-protein
MKKPFVFAAAFAVAALTGAVHAQDLPKTKVKVVGGLSNLTAYNDYEKPFWTKTVPELSKGQVTADIKGFNEMGLKGPEILRLMSQGVIEFGTATLAYFASDNPINEAIDLAGLAPDVKTARQVTDAFEPVYAKLYGEGANVKLLGISTYPAQVLFCNAEITGLADIKGKKVRTSSRTTAEFVEALGGSSVTMAFGEVVPALQNKVVDCAITGSLSGYSAKWYEVSTHLYALPINWNQQIHAVNQKAWDKLDPKVRTFLQDNIKNLVDQIWDAAARQTQEGYDCNTGAAACPYPVKGKMVLVQPTDADRALLKKVTEEAVLPKWAARCSAQCVSDFNATIGKTLGLVAKK
>NZ_CP020819.1|WP_003811054.1|2328107_2329016_+|LysR-family-transcriptional-regulator
MIDLKHIETFFWVSTLGSFRAAAEKLNTTQPAISQRIASLEADLGVRLFERDARGVSLTGKGQELLSHAERMLQMRHDLMQAAREQNVMSGTVRIGVAETIVQTWLPALIEHVHAAYPALVLQIEVDTTHVLRGQLMARQIDVAFLMGPILEARMENIPLCAYPLAWVASPLLELGPEPLTLERIGTLPVITYPSSSEPYRQVRDMLTRAGVAAPRMYGSASLAMVVRMTKDGIGTSVIAPVFLDEELARGELRLLNVQADPLPDLSFTASWVQGPDSHAARAIALLAQRTAAEHGGAIGAG
>NZ_CP020819.1|WP_003811078.1|2352813_2353419_+|fimbrial-protein
MNLKFAGIALGLTACALTYQHQVFAADGTLVITGAITDTTCKINGAEPPTNIAVQLPTISRTALKDVGSTAGGTVFDVKLTECPQALNGQQVGLFFEPGGTVDYTSGNLFAYRADSQGVEQVPQTKADNVQFQLANLDGSAIHLGRNKGAQAAQTFLVSQTAGSSTYGTTLRYLARYIRSGAGSIVAGNLRSQVGFSVMYP
>NZ_CP020819.1|WP_138142578.1|2353668_2354403_+|molecular-chaperone-FimB
MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFFLTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLPGNPLTAAADLTFKRKANGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQAAIAD
>NZ_CP020819.1|WP_015063873.1|2354465_2357087_+|fimbrial-biogenesis-outer-membrane-usher-protein
MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGADLSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYGQLEAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRFRRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTLGWGQGRFTRRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPYSERLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTEANGAVQTFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADGVNLYGGLLIAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKTLSGTNTAIRLATLRYSSSGFWNFADAVNAGPAETNGRNGRFGLYSLLGRERPRGDFSVTLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENRRSTEHQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSWSGTYGEVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVVNTRNAAVDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVIPRAGAVVALRFPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRGVSASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAVQAVAQPAPISISGKDHEPDIR
>NZ_CP020819.1|WP_110115596.1|2357100_2358198_+|fimbrial-protein
MPARVISFCGAALAIWAGLAVQPAMAVDPPVDCGRALGLHFWSSTSLISDQTPDGTLIGKPVVGRSLLSKSCEVPDDIKDELSDKHDGEPVDIVLELGSSYKIRPQSYGHPGIVVDLPSGSTEETGIAIYIDFGSSPMQKVGERQWLYPQKGEVLFDALAINGDNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLATGTISTDVATSTIDLKTCRYTSQTVSLPTIQRSALTGVGTTLGTTDFQMPFWCYGRPRVSVYMSAANMQTGVDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGKIALPEAQQTDSATFSLPMKAQYYQTSTSTSAGKLSVTYAVTLNYD
>NZ_CP020819.1|WP_033452387.1|2358190_2359942_+|filamentous-hemagglutinin-transporter-protein-FhaC
MTDATNRFRPGLVVRALVRAGLLFAVAACAQAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAASPARKPDATSGHTVTVHAVDLDFGVEGRLFDPTPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGWLIDGKPLERTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGINNGKYAAYDERGPQGNVSRLNGSLAWTRYMALADQPLQWTSQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLFGKQASMAPFAGVDVGALKSNHPDARTIRMAGLAAGVRFDLPYARLSFTYSKPVGAQPGGAPRAPVWYINAGLSF
>NZ_CP020819.1|WP_033452384.1|2359967_2361269_-|TRAP-transporter-large-permease-subunit
MNEILIVTLLVVSIFALLGCGVWVGLTLAGTAWIGMEVLSSRPAGDAMAVTIWGASSSWTLTALPLFLWMGEILFRTRLSEDLFKGLAPWLNRLPGRLLHTNVIGCAIFAAVSGSSAATCATVGKMTIPELTRRGYPEDKILGTLSGAGTLGLLIPPSIIMIVYGVAADVSIAKLFIAGIFPGLLLALLFMGYIAWWAIRHPGAVPAADPGISFMQKLKQSRHLIPVLLLIGAVLGSIYTGIATATEAAAVGVVGALILSALQGSLTRASFMTSLLGATRLYCMIALILAGAQFLTLAMGYIGLPRALAEWIGGLGLSQFGLIMALMVFFIVLGCFLDGISIVVLTMGVLLPTVQAAGIDLIWFGIFIVFVVEMAQITPPVGFNLFVLAGMSGRELPYIARASLPMFFLMIVAVLLLYYLPGIATWLPQHMTL
>NZ_CP020819.1|WP_003811089.1|2361261_2361762_-|TRAP-transporter-small-permease
MRRFLDRLYGAAGLLAGLCTIGVLVSVLAAIIARQVGLNIPGTDAYAGYFMAAAGFLALASTFKHGEHIRVTLLLNALSAPGHRRLDIFALCVGAILAAAFAWFSVKLAHDSWLFNDISTANDATPLWIPQLTMAAGTILFFIALLDELVRRVRGQGFAKSQQIHE
>NZ_CP020819.1|WP_003811091.1|2361768_2362854_-|TRAP-transporter-substrate-binding-protein
MQRFKGAAAIARPWLPMPCGVLRGMPQFENSITKDVSMYKKLSLLAGTIVLAFGAGAQAQTKWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMKGLKWRAYSPVTAKIAELVGAQPVTVQQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKKAFDALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKAGADGQAMIDAYRKQ
>NZ_CP020819.1|WP_003811093.1|2363006_2364305_-|TRAP-transporter-large-permease-subunit
MGELAQSLVLIASLLLLLAAGVWVSLALVASGLVALLLFTDAPAGIIFATKSWDASANWALTALPLFIWMGEILYRTRLAEDMFSGLGPWVRRLPGRLVHVNVLGCGIFAAVSGSSAATAATIGRISLPELKARGYDDGLAIGSLAGAGTLGLLIPPSIVMIVYGVAAQVSLIKLFIAGILPGLLLMALFSGYIGVWSLRNPARVPPREPAVPWLTMLARLRLLLPVVALIAGVIGSIYAGIATATEAATIGVIGALAIAAWGKSLNRRSFIDSLMGATRTSCMISFILLGAAYLTSAMSFTGLPANLAEWISSLGLSQYGLIAVLTVFFILMGAFLDGISIVVLTTAVLMPAIQAADIDPIWFGIYLILVVEMAQITPPVGFNLFVIQGITGRNLFELVRMAFPFFLLLVLATAIITIFPAIVTALPLAMR
>NZ_CP020819.1|WP_003811094.1|2364297_2364789_-|TRAP-transporter-small-permease
MPILDRIAVASGAVAALFLALIGAIVAAQIASRLLGMQIPAADDFAAWSMAASVFLALPYAMLRGDHIRVTLLLQFLPKTAHRPYELAATALGLALSAWAAWQAAGFVHESFAYDEVAQGMLRVPLWIPQICMPIGLALLTLMLARRLAMVARGRQPEETAHG

Crispr_ID: NZ_CP020819_5

• CRISPR_ID: NZ_CP020819_5
• CRISPR_location: 3129255-3129382
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_5

Consensus_repeat	Method
GCCCCCACGCTGCGCCCGCTACGCGGGCTTGCTGCCCCCCGAG	CRISPRCasFinder

spacers of NZ_CP020819_5

>5.1|3129298|42|NZ_CP020819|CRISPRCasFinder
AGGGGGCTTTTTTGCCTTGGGGCGGCCCAGCGGCAAAGTAGT

CRISPR arrays and Neighbor proteins around NZ_CP020819_5

CRISPR arrays

The CRISPR arrays of NZ_CP020819_5

>merge|NZ_CP020819|5|3129255-3129382|CRISPRCasFinder
GCCCCCACGCTGCGCCCGCTACGCGGGCTTGCTGCCCCCCGAGAGGGGGCTTTTTTGCCTTGGGGCGGCCCAGCGGCAAAGTAGTGCCCCCACGCTGCGCCCGCTATGCGGGCTTGCTGCCCCCCGAG

>NZ_CP020819|5|5|3129255-3129382|CRISPRCasFinder
GCCCCCACGCTGCGCCCGCTACGCGGGCTTGCTGCCCCCCGAG	AGGGGGCTTTTTTGCCTTGGGGCGGCCCAGCGGCAAAGTAGT
GCCCCCACGCTGCGCCCGCTATGCGGGCTTGCTGCCCCCCGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003812463.1|3123670_3124183_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl|CDD|273927
NZ_CP020819.1|WP_003812491.1|3137755_3138187_-|hypothetical-protein	unknown	unknown	gnl|CDD|224462
NZ_CP020819.1|WP_003812458.1|3121672_3121996_-|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl|CDD|213674
NZ_CP020819.1|WP_003812480.1|3132913_3133630_-|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl|CDD|131482
NZ_CP020819.1|WP_080704393.1|3129467_3131012_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl|CDD|273608
NZ_CP020819.1|WP_015063638.1|3136601_3137759_-|thiolase	unknown	unknown	gnl|CDD|180434
NZ_CP020819.1|WP_003812478.1|3132279_3132921_-|CoA-transferase-subunit-B	unknown	unknown	gnl|CDD|188219
NZ_CP020819.1|WP_003812466.1|3125151_3127179_-|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl|CDD|235395
NZ_CP020819.1|WP_010926437.1|3131282_3132245_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270296
NZ_CP020819.1|WP_003812486.1|3135803_3136595_-|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|235546
NZ_CP020819.1|WP_003812465.1|3124398_3124890_-|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl|CDD|319971
NZ_CP020819.1|WP_110115601.1|3133626_3134622_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173838
NZ_CP020819.1|WP_003812472.1|3128509_3129238_+|transcriptional-repressor-LexA	unknown	unknown	gnl|CDD|234688
NZ_CP020819.1|WP_010926439.1|3119165_3121028_-|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl|CDD|235360
NZ_CP020819.1|WP_003812484.1|3134643_3135807_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
NZ_CP020819.1|WP_015063637.1|3138183_3138987_-|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|223955
NZ_CP020819.1|WP_033451903.1|3127256_3128459_+|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl|CDD|181731
NZ_CP020819.1|WP_003812460.1|3121997_3122408_-|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl|CDD|183087
NZ_CP020819.1|WP_003812456.1|3121157_3121670_-|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl|CDD|235133
NZ_CP020819.1|WP_003812462.1|3122441_3123653_-|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl|CDD|184450

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003812463.1|3123670_3124183_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl|CDD|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
NZ_CP020819.1|WP_003812491.1|3137755_3138187_-|hypothetical-protein	gnl|CDD|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	1.42164e-21
NZ_CP020819.1|WP_003812458.1|3121672_3121996_-|iron-sulfur-cluster-assembly-protein-IscA	gnl|CDD|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54
NZ_CP020819.1|WP_003812480.1|3132913_3133630_-|3-oxoacid-CoA-transferase-subunit-A	gnl|CDD|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	1.51824e-141
NZ_CP020819.1|WP_080704393.1|3129467_3131012_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl|CDD|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.27065e-84
NZ_CP020819.1|WP_015063638.1|3136601_3137759_-|thiolase	gnl|CDD|180434	PRK06158, PRK06158, thiolase; Provisional.	0
NZ_CP020819.1|WP_003812478.1|3132279_3132921_-|CoA-transferase-subunit-B	gnl|CDD|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	3.32577e-117
NZ_CP020819.1|WP_003812466.1|3125151_3127179_-|excinuclease-ABC-subunit-UvrB	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP020819.1|WP_010926437.1|3131282_3132245_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl|CDD|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.39297e-140
NZ_CP020819.1|WP_003812486.1|3135803_3136595_-|SDR-family-oxidoreductase	gnl|CDD|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	5.93465e-80
NZ_CP020819.1|WP_003812465.1|3124398_3124890_-|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl|CDD|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.0991e-75
NZ_CP020819.1|WP_110115601.1|3133626_3134622_-|acyl-CoA-dehydrogenase	gnl|CDD|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	6.82037e-20
NZ_CP020819.1|WP_003812472.1|3128509_3129238_+|transcriptional-repressor-LexA	gnl|CDD|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.30999e-106
NZ_CP020819.1|WP_010926439.1|3119165_3121028_-|Fe-S-protein-assembly-chaperone-HscA	gnl|CDD|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP020819.1|WP_003812484.1|3134643_3135807_-|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.189e-78
NZ_CP020819.1|WP_015063637.1|3138183_3138987_-|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.56988e-63
NZ_CP020819.1|WP_033451903.1|3127256_3128459_+|aspartate/tyrosine/aromatic-aminotransferase	gnl|CDD|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP020819.1|WP_003812460.1|3121997_3122408_-|Fe-S-cluster-assembly-scaffold-IscU	gnl|CDD|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
NZ_CP020819.1|WP_003812456.1|3121157_3121670_-|Fe-S-protein-assembly-co-chaperone-HscB	gnl|CDD|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
NZ_CP020819.1|WP_003812462.1|3122441_3123653_-|IscS-subfamily-cysteine-desulfurase	gnl|CDD|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0

Protein sequences

>NZ_CP020819.1|WP_003812472.1|3128509_3129238_+|transcriptional-repressor-LexA
MRLAFFPWVLQNGAVYPYSPQKRVIAMATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>NZ_CP020819.1|WP_033451903.1|3127256_3128459_+|aspartate/tyrosine/aromatic-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAALDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKAQGVAQDFSFVLAQRGMFSYSGLTATQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>NZ_CP020819.1|WP_003812466.1|3125151_3127179_-|excinuclease-ABC-subunit-UvrB
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVG
>NZ_CP020819.1|WP_003812465.1|3124398_3124890_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRHLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>NZ_CP020819.1|WP_003812463.1|3123670_3124183_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>NZ_CP020819.1|WP_003812462.1|3122441_3123653_-|IscS-subfamily-cysteine-desulfurase
MSNRPIYLDYSATTPVDPRVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>NZ_CP020819.1|WP_003812460.1|3121997_3122408_-|Fe-S-cluster-assembly-scaffold-IscU
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>NZ_CP020819.1|WP_003812458.1|3121672_3121996_-|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>NZ_CP020819.1|WP_003812456.1|3121157_3121670_-|Fe-S-protein-assembly-co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>NZ_CP020819.1|WP_010926439.1|3119165_3121028_-|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAVASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRAPGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRAALAGRKLDELA
>NZ_CP020819.1|WP_080704393.1|3129467_3131012_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MDVTPLLPMPSDSSISCKSRSRSMALARRRLAWPGVCGALSLAAWLAPAQAQSAMAASGPQDAPAVSIPVLDGWPVDDESGWTTIDLDGTAIDDGWTHIDIPRPELDGAPVDSEDGRLPSPPEEAPQAGPDASKQRPEGLPAPDANPQPDAKPGAEMKPGPGVEPGSEAEPGPQGQPGPQPGARPQDEPHAQPLPPAGNPGAGIYMPRSGILTAPVLAVLGTASAPQGIWQAEMNALSKRMGELRLTPAAGGVWARSFAQRQRLDNQVVDRFTQTVGGIEIGADTALPAAEGRWHVGAVAGYSRARRKLAHSARGNSDSLHVGAYATYIGDGGFYLDGIVRVNRYEHDFKADGQRGARVTGKYRANGIGLSLETGRRFTWAGDWFVEPQVEVALFRSGGADYTASNGVRVDVASTKSLLGRAGLQVGRKLDLGNGKLVQPYAKLSWLQEFDGVGKVRTNDIGHDVKLRGGRAELDLGVAAALGRHSSLFASYEYSKGSRLTIPWSFHVGYRYAW
>NZ_CP020819.1|WP_010926437.1|3131282_3132245_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKTKIKIVTLALCAFSSAVFASSFPSKPINLIVPYPPGGAVDPIARLYAEKISQSWGVPVIVLNRPGAGTTIGLNQAARAEPDGYTVVLGTASITSNAPLYRSLPYDTLKDFTYLSMAGMIPLAITANPRTAVNSMDELVGQLKKKPGSLTYSSSGNGTIIHLGGELFKSLAGVDMVHVPYKGSGPSVMAGVAGEVDLTFDSVFLMDPQVKAGKLKYIAVASEKRLKSLPEVPAIGEKYPGYFVTSWVGFMGPAGIPADITAAWAKEIARVAALPDVSEKLATLGVESVSSTPQQFSAFVESEIRKWEKVVQDAHIPPVQ
>NZ_CP020819.1|WP_003812478.1|3132279_3132921_-|CoA-transferase-subunit-B
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIAGASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKSCTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>NZ_CP020819.1|WP_003812480.1|3132913_3133630_-|3-oxoacid-CoA-transferase-subunit-A
MTAGTSTHFNQVNGVGMLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPSQPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAHVADAYGNLRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>NZ_CP020819.1|WP_110115601.1|3133626_3134622_-|acyl-CoA-dehydrogenase
MYSDAFEDLLKGRCEPAVVRAIEAGGDVQALWNAIVQSGFLDLMAPEQAGGAAADLADALPLFTALGAYAMPLPVGQAIALRTLLPAGMEVPGGLPSFAPALRTGPDGALRAPRVPYGMLAGPVLGELDGALCLLDARAAQRRDCGLHGEPTADLSWDAGVRQDAVRRLDDAGGAPGRLAAWGAALHAALLTGAMTRCFEMSLQYGNDRTQFGRSIGKFQAVQHQLAVMAEHVAAARIATAAAFRAGLAQPALLPAAIAKARASEAAALAANTAHAVHGAIGVTEEYDLQLYTRRLHGWRLAHGSEAYWHQVVGAALMGSGDGAVQFVRGL
>NZ_CP020819.1|WP_003812484.1|3134643_3135807_-|acyl-CoA-dehydrogenase
MIVSALIDRFELAELPARAQAFRQDVQAFLKAELPPLPADRRARSWMGFDAGFSRKLAARGWVGVTLPRAYGGAEMDAFSRFVLIEELLCAGAPVSAHWIADRQSGPQIRKFGSEAQRSFYLPRICRGEAFFCIGMSEPNSGSDLASVGTRATRRADGGWTLSGRKIWTTNAQHCHYMIALVRTSGTPQDRNQGLSQFIVDLSLPGVTVRPISDLAGDAHFSEVFFDDVQLSDEALIGQEGSGWEQVTAELAFERSGPERIYSSMVLLDGWIQWLRGRGDVSQTAAVGRYATHLAALRNLSLSVTARLAAGESPVVEAALVKELGTTFEQEIPAAIEAALGSDPGADIDAELLRTCAYVNQVCPTYSLRGGTREILRGMIARGLGLR
>NZ_CP020819.1|WP_003812486.1|3135803_3136595_-|SDR-family-oxidoreductase
MKETAMQDKLLTLENRQVIVTGAGQGIGRALASAIAELGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGVTAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQINYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDAASYVTGQHLSVNGGYTIGL
>NZ_CP020819.1|WP_015063638.1|3136601_3137759_-|thiolase
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVDLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTDNNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLKKEQLGAVALAARQWAQKNPEAYMRAPLTMDEYLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAAAWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPVNTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>NZ_CP020819.1|WP_003812491.1|3137755_3138187_-|hypothetical-protein
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYNVCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>NZ_CP020819.1|WP_015063637.1|3138183_3138987_-|enoyl-CoA-hydratase/isomerase-family-protein
MIMSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEGRNRILSMQRWFDGLVDLEKPVIAAVDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAKALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRESAFHQEAARRFLDKQAPLYQWPQEQQ

Crispr_ID: NZ_CP020819_6

• CRISPR_ID: NZ_CP020819_6
• CRISPR_location: 3253251-3253366
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_6

Consensus_repeat	Method
TTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	CRISPRCasFinder

spacers of NZ_CP020819_6

>6.1|3253284|50|NZ_CP020819|CRISPRCasFinder
GGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGCT

CRISPR arrays and Neighbor proteins around NZ_CP020819_6

CRISPR arrays

The CRISPR arrays of NZ_CP020819_6

>merge|NZ_CP020819|6|3253251-3253366|CRISPRCasFinder
TTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAAGGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGCTTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

>NZ_CP020819|6|6|3253251-3253366|CRISPRCasFinder
TTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	GGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGCT
TTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003812728.1|3252790_3253054_-|membrane-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_015064053.1|3246340_3247957_-|Flp-pilus-assembly-complex-ATPase-component	unknown	unknown	gnl|CDD|227297
NZ_CP020819.1|WP_003812737.1|3256612_3257797_-|heme-biosynthesis-operon-protein-HemX	unknown	unknown	gnl|CDD|235899
NZ_CP020819.1|WP_003812734.1|3254448_3254985_-|inorganic-diphosphatase	unknown	unknown	gnl|CDD|179262
NZ_CP020819.1|WP_003812730.1|3253411_3253543_-|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl|CDD|227797
NZ_CP020819.1|WP_010926375.1|3255013_3256609_-|hypothetical-protein	unknown	unknown	gnl|CDD|273126
NZ_CP020819.1|WP_010926374.1|3257834_3258659_-|uroporphyrinogen-III-synthase	unknown	unknown	gnl|CDD|119440
NZ_CP020819.1|WP_015064055.1|3249362_3250208_-|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl|CDD|274472
NZ_CP020819.1|WP_010928268.1|3251477_3252794_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_003812713.1|3245498_3246344_-|membrane-protein	unknown	unknown	gnl|CDD|227300
NZ_CP020819.1|WP_003812748.1|3261567_3262449_-|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl|CDD|180194
NZ_CP020819.1|WP_003812742.1|3258655_3259600_-|hydroxymethylbilane-synthase	unknown	unknown	gnl|CDD|234612
NZ_CP020819.1|WP_015064056.1|3250204_3250861_-|hypothetical-protein	unknown	unknown	gnl|CDD|184854
NZ_CP020819.1|WP_015064059.1|3253569_3254265_-|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl|CDD|223257
NZ_CP020819.1|WP_010930986.1|3259718_3260438_-|TerC-family-protein	unknown	unknown	gnl|CDD|163429
NZ_CP020819.1|WP_015064054.1|3247953_3249366_-|secretory-apparatus	unknown	unknown	gnl|CDD|333965
NZ_CP020819.1|WP_015064052.1|3244591_3245488_-|type-II-secretion-system-F-family-protein	unknown	unknown	gnl|CDD|224975
NZ_CP020819.1|WP_003812709.1|3243569_3244370_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_003812745.1|3260596_3261292_-|TerC-family-protein	unknown	unknown	gnl|CDD|163429
NZ_CP020819.1|WP_015064057.1|3250857_3251481_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_010926375.1|3255013_3256609_-|hypothetical-protein	gnl|CDD|273126	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein. Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General].	5.88418e-71
NZ_CP020819.1|WP_015064053.1|3246340_3247957_-|Flp-pilus-assembly-complex-ATPase-component	gnl|CDD|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.81087e-139
NZ_CP020819.1|WP_003812737.1|3256612_3257797_-|heme-biosynthesis-operon-protein-HemX	gnl|CDD|235899	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed.	4.52015e-54
NZ_CP020819.1|WP_003812734.1|3254448_3254985_-|inorganic-diphosphatase	gnl|CDD|179262	PRK01250, PRK01250, inorganic diphosphatase.	2.68623e-113
NZ_CP020819.1|WP_003812730.1|3253411_3253543_-|entericidin-A/B-family-lipoprotein	gnl|CDD|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	8.70055e-07
NZ_CP020819.1|WP_010926374.1|3257834_3258659_-|uroporphyrinogen-III-synthase	gnl|CDD|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	4.88788e-45
NZ_CP020819.1|WP_015064055.1|3249362_3250208_-|Flp-pilus-assembly-protein-CpaB	gnl|CDD|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.27424e-49
NZ_CP020819.1|WP_015064059.1|3253569_3254265_-|fumarylacetoacetate-hydrolase-family-protein	gnl|CDD|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.66779e-90
NZ_CP020819.1|WP_003812713.1|3245498_3246344_-|membrane-protein	gnl|CDD|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.18806e-34
NZ_CP020819.1|WP_003812748.1|3261567_3262449_-|succinate--CoA-ligase-subunit-alpha	gnl|CDD|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP020819.1|WP_010930986.1|3259718_3260438_-|TerC-family-protein	gnl|CDD|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	3.14656e-77
NZ_CP020819.1|WP_015064056.1|3250204_3250861_-|hypothetical-protein	gnl|CDD|184854	PRK14852, PRK14852, hypothetical protein; Provisional.	0.00208036
NZ_CP020819.1|WP_015064054.1|3247953_3249366_-|secretory-apparatus	gnl|CDD|333965	pfam00263, Secretin, Bacterial type II and III secretion system protein.	4.23385e-53
NZ_CP020819.1|WP_015064052.1|3244591_3245488_-|type-II-secretion-system-F-family-protein	gnl|CDD|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	9.08185e-19
NZ_CP020819.1|WP_003812742.1|3258655_3259600_-|hydroxymethylbilane-synthase	gnl|CDD|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	8.72133e-165
NZ_CP020819.1|WP_003812745.1|3260596_3261292_-|TerC-family-protein	gnl|CDD|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	1.70286e-69

Protein sequences

>NZ_CP020819.1|WP_003812728.1|3252790_3253054_-|membrane-protein
MSVKQRQLGQGMTEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMARELAGEDGSAQARAAQSAAGRAASQTRARSLKSFTGNAQGAK
>NZ_CP020819.1|WP_010928268.1|3251477_3252794_-|hypothetical-protein
MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQLLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQVALAHLASLAAWARFAQTQAARRTAQNPPVALIGLLFGPRAARGYGAAHDALAGDLMQAYAAHDELAHRVLQQAADTLARDARATRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVPGTSARGLRGWAQRAAGYFDFLQPRDFTREGNWIVSPRCPTRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYFREYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVHRHTSWSLLGGRHNPLALSYAASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSVARGRPDVLFLPYWQARRAAADAALPMAARRTVRGPESRP
>NZ_CP020819.1|WP_015064057.1|3250857_3251481_-|hypothetical-protein
MRGAAFSRRQRGQALAEALPLLAMLLLAWAAVAWLGTLRHQALRLGQHSRVAAFMAAAAAPSAPRTATLARQAGLAGRTAADGMPALLARDWLQVDTRLLHAQAAEPAAMPGGLLREGAIAAALRGVTVLAIGPGHASDARAGNDRLARSVAGWQLAHRAAAPAVAATRRRVRPVEAAWGLRDAGQDWLRTWADMASADGAVLRRQP
>NZ_CP020819.1|WP_015064056.1|3250204_3250861_-|hypothetical-protein
MTPAHLAASASAWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQGIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDCTHTISLAPQSGGVEGVAARLCWPRGLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTETARWAVRREARLRASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP
>NZ_CP020819.1|WP_015064055.1|3249362_3250208_-|Flp-pilus-assembly-protein-CpaB
MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLEAGTPLHDELVAVRDMPQAWLPAGALLPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFAAPSAREAGDLPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDTEAVMP
>NZ_CP020819.1|WP_015064054.1|3247953_3249366_-|secretory-apparatus
MSMRSRLPLHARGWLPWMAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIATLAQRYPEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEGNGTTLFKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWRQPPSADAQEGAP
>NZ_CP020819.1|WP_015064053.1|3246340_3247957_-|Flp-pilus-assembly-complex-ATPase-component
MNVLELALHFEDGARRRMRLAAPVTIGRGAQCALRIANWRVGRVHARLSCLDGAVVLEDLGTLGGTSVNGLRVATHAPVLPDDEIVIGPCLIRVSACCTGSAPSPAPAALPAGGASRGEDLDAALQQSLVLLPHRRRLHAALLEALDLRRRDVSAMSDRMLRAQAEQRLVELVGQDGELPEGIDRAQLCRAVLDEAVGLGPLEPLLADGGISEIMVNRHDEIYVERAGRLQRHAAAFSSEQAVRWVVERIVAPLGRRIDDSSPMVDARLPDGSRVNAVIAPIAIRGVSLTIRKFPRQRPGMADLLAAGSLSEPMARFLLQCVHARKNLLVSGGTGSGKTTLLNILSNAIPEGERIVTIEDAAELRLDHAHLVALEARPANAEGRGRVDIRDLVRNALRMRPDRIVVGECRGAEAFDMLTAMNTGHEGSLTTLHANTPRDALARLEAMTLMAGLDLPLPVVREHIAASIDIIVQQARMADGRRIVTAIVEIAGMESGRIQTQELFRYDARHGFIAGDAPVLADGAWARGPFTGQPEPAP
>NZ_CP020819.1|WP_003812713.1|3245498_3246344_-|membrane-protein
MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSEVFLFVDPAQLWAAALAMAAAGAAAAWVFSGSAWLAAVAAVALLRLPHLLLGAARRRRLRQLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGALPPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV
>NZ_CP020819.1|WP_015064052.1|3244591_3245488_-|type-II-secretion-system-F-family-protein
MWLWLAASVAGVAAGWACLALLRGWCGAGWAAACGPEPAPGPPAWRLPRIWRCCRPWLGPLLPWCDRLLSWRMRAVIERAIVRAGCDGLVRPCEVAALSLWMAWLGGVVAVTAASLADGWRAWLPLAPAACAAGAWPALWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQGGL
>NZ_CP020819.1|WP_003812709.1|3243569_3244370_+|hypothetical-protein
MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATYTPLVGPLLFVALMPSITLMTLSACKHVEAGRVMLPSMWLQPLKKPGVFKKLFLMGMLYVGLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFWHAPVLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLAGTLQVPVTIIAGGVLYCSFYPAYTSVFGVNDAHAGLDNSDSAHA
>NZ_CP020819.1|WP_003812730.1|3253411_3253543_-|entericidin-A/B-family-lipoprotein
MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK
>NZ_CP020819.1|WP_015064059.1|3253569_3254265_-|fumarylacetoacetate-hydrolase-family-protein
MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTGREDPFFFCKPADAILSVADGATGEMPYPPKTANLHYEMELVVVLGKGGRDLTVEQADECVWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIWLDVNGERKQSSDISQMIWNIPESVAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEGLGELRVRIA
>NZ_CP020819.1|WP_003812734.1|3254448_3254985_-|inorganic-diphosphatase
MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRFMLTAMHYPCNYGYIPQTLSEDGDPADVLVLTPFPIQIGAVVRCRAIGVLEMDDESGGDAKLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVDAAHEEIVRSAERYAKGQA
>NZ_CP020819.1|WP_010926375.1|3255013_3256609_-|hypothetical-protein
MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTVLLLVAAFVTLYIGLRLLAWLVAIPDRLRAWRGRRAQERDHELLERGWIGLLEGRFAQAEKDLSKLFDQTKVRSRRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEATATVSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRRNAIGKAEAEQLIDSAGAARLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGEASEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKAETWLQQRPADTDLLTALGLLCLNGQLWGQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPVLAADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIADAPPEVEPGAVDYVLDPDARAAGEHEPASAVAPEPVSVPPRTAIDIEDYFDSAPIPAAAIEAPVSSYRAGGDDEQPAKPGGAVSSAGPASGDKA
>NZ_CP020819.1|WP_003812737.1|3256612_3257797_-|heme-biosynthesis-operon-protein-HemX
MTDNTSATPPGTVPGTPGTAAADEAVASQSRKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLGAELTQSRNDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSNAIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEAVPASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSMLMRQPAVWKSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD
>NZ_CP020819.1|WP_010926374.1|3257834_3258659_-|uroporphyrinogen-III-synthase
MTGRSGPRGGLPMSQIAILTRPQGRNGALAQRLHEAGWQTLCLPALRIEPLPPENGAVPLPRDYDLVVFVSGNAARLYLEQLGERGQLPWPAGAVAATVGPASARALLDSGQFGADTTVLHPAETAPTHDSEALWSLLRARPALPRRALLVRGTQGRDWLADRLAAAGVEVSRHAVYRRRPAPWAQEGRQRLRDWARAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFVVTHPVLAERLRALAGGGADAPMVKNCMPADEAIFATFVAA
>NZ_CP020819.1|WP_003812742.1|3258655_3259600_-|hydroxymethylbilane-synthase
MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTRGDQILDRTLSKVGGKGLFVKELETALLDGRADLAVHSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNGDYAAIVLAAAGLERLGLAARIRALLEPADSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLGGSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAILAELLPTSPAP
>NZ_CP020819.1|WP_010930986.1|3259718_3260438_-|TerC-family-protein
MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGLLLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGSTLVLKLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA
>NZ_CP020819.1|WP_003812745.1|3260596_3261292_-|TerC-family-protein
MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKAIVVGSAAAIVMRIVLTLVAAKLLLLPWLKLIGAALLVYIGVSLLLPEGEDDGAEKGHGSLLVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVIERFPIIVWVGAALLGFIAGELLVGDPALEESVARIDTMLGVTQHDFALMVGAIGAILVLALGKIFQARQRA
>NZ_CP020819.1|WP_003812748.1|3261567_3262449_-|succinate--CoA-ligase-subunit-alpha
MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPKKAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAGAAAAIWEAVEAELDLVICITEGIPVRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSGTLTYEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVNAAQWAKDNMKKPVVGFIAGVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRNPSEMGKLLKSVL

Crispr_ID: NZ_CP020819_7

• CRISPR_ID: NZ_CP020819_7
• CRISPR_location: 4108897-4109022
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_7

Consensus_repeat	Method
GGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCATTTTC	CRISPRCasFinder

spacers of NZ_CP020819_7

>7.1|4108943|34|NZ_CP020819|CRISPRCasFinder
CACCGCCGGGCCGCCCCAAGGCAAAAGCCCCCCT

CRISPR arrays and Neighbor proteins around NZ_CP020819_7

CRISPR arrays

The CRISPR arrays of NZ_CP020819_7

>merge|NZ_CP020819|7|4108897-4109022|CRISPRCasFinder
GGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCATTTTCCACCGCCGGGCCGCCCCAAGGCAAAAGCCCCCCTGGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCTTTTCT

>NZ_CP020819|7|7|4108897-4109022|CRISPRCasFinder
GGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCATTTTC	CACCGCCGGGCCGCCCCAAGGCAAAAGCCCCCCT
GGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCTTTTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003814178.1|4104174_4105023_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP020819.1|WP_003814203.1|4114721_4115561_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl|CDD|224131
NZ_CP020819.1|WP_003814191.1|4109358_4110027_-|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl|CDD|224215
NZ_CP020819.1|WP_003814183.1|4106048_4106849_-|EI24-domain-containing-protein	unknown	unknown	gnl|CDD|377798
NZ_CP020819.1|WP_003814205.1|4115582_4116464_-|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl|CDD|378238
NZ_CP020819.1|WP_033451654.1|4099579_4103974_-|dermonecrotic-toxin	unknown	unknown	gnl|CDD|283449
NZ_CP020819.1|WP_010931458.1|4111931_4113032_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|223506
NZ_CP020819.1|WP_003814185.1|4106910_4107294_+|thioredoxin-family-protein	unknown	unknown	gnl|CDD|239245
NZ_CP020819.1|WP_003814172.1|4097543_4098122_-|TIGR01841-family-phasin	unknown	unknown	gnl|CDD|130900
NZ_CP020819.1|WP_003814197.1|4111492_4111915_+|DUF4440-domain-containing-protein	unknown	unknown	gnl|CDD|379209
NZ_CP020819.1|WP_003820991.1|4095571_4096306_+|arginyltransferase	unknown	unknown	gnl|CDD|234939
NZ_CP020819.1|WP_003814179.1|4105181_4105994_-|competence/damage-inducible-protein-A	unknown	unknown	gnl|CDD|223986
NZ_CP020819.1|WP_010929121.1|4107305_4108739_-|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
NZ_CP020819.1|WP_003814193.1|4110290_4111211_+|branched-chain-amino-acid-transaminase	unknown	unknown	gnl|CDD|235841
NZ_CP020819.1|WP_003814170.1|4096346_4097396_+|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl|CDD|235388
NZ_CP020819.1|WP_003814188.1|4109026_4109356_-|AzlD-domain-containing-protein	unknown	unknown	gnl|CDD|226827
NZ_CP020819.1|WP_033451656.1|4098508_4099486_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD	unknown	unknown	gnl|CDD|270294
NZ_CP020819.1|WP_003814206.1|4116545_4117640_-|porin	unknown	unknown	gnl|CDD|238208
NZ_CP020819.1|WP_003814195.1|4111257_4111470_+|zinc-finger-domain-containing-protein	unknown	unknown	gnl|CDD|226826
NZ_CP020819.1|WP_003814201.1|4113128_4114646_-|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|227122

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003814178.1|4104174_4105023_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.34506e-72
NZ_CP020819.1|WP_003814203.1|4114721_4115561_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl|CDD|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	2.75704e-156
NZ_CP020819.1|WP_003814191.1|4109358_4110027_-|AzlC-family-ABC-transporter-permease	gnl|CDD|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.16802e-27
NZ_CP020819.1|WP_003814183.1|4106048_4106849_-|EI24-domain-containing-protein	gnl|CDD|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	1.28978e-07
NZ_CP020819.1|WP_003814205.1|4115582_4116464_-|cytochrome-c-oxidase-assembly-protein	gnl|CDD|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	4.8617e-46
NZ_CP020819.1|WP_033451654.1|4099579_4103974_-|dermonecrotic-toxin	gnl|CDD|283449	pfam05785, CNF1, Rho-activating domain of cytotoxic necrotizing factor. This family consists of several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) causes necrosis of rabbit skin and re-organisation of the actin cytoskeleton in cultured cells. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibers and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin which is composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain.	7.27553e-144
NZ_CP020819.1|WP_010931458.1|4111931_4113032_+|alpha/beta-fold-hydrolase	gnl|CDD|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	1.04959e-90
NZ_CP020819.1|WP_003814185.1|4106910_4107294_+|thioredoxin-family-protein	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.97539e-15
NZ_CP020819.1|WP_003814172.1|4097543_4098122_-|TIGR01841-family-phasin	gnl|CDD|130900	TIGR01841, hypothetical_protein, phasin family protein. This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.	3.19978e-10
NZ_CP020819.1|WP_003814197.1|4111492_4111915_+|DUF4440-domain-containing-protein	gnl|CDD|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.07341e-14
NZ_CP020819.1|WP_003820991.1|4095571_4096306_+|arginyltransferase	gnl|CDD|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	6.93678e-140
NZ_CP020819.1|WP_003814179.1|4105181_4105994_-|competence/damage-inducible-protein-A	gnl|CDD|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	2.67138e-63
NZ_CP020819.1|WP_010929121.1|4107305_4108739_-|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	8.74039e-162
NZ_CP020819.1|WP_003814193.1|4110290_4111211_+|branched-chain-amino-acid-transaminase	gnl|CDD|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
NZ_CP020819.1|WP_003814170.1|4096346_4097396_+|quinone-dependent-dihydroorotate-dehydrogenase	gnl|CDD|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP020819.1|WP_003814188.1|4109026_4109356_-|AzlD-domain-containing-protein	gnl|CDD|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	7.8037e-15
NZ_CP020819.1|WP_033451656.1|4098508_4099486_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD	gnl|CDD|270294	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	5.90091e-161
NZ_CP020819.1|WP_003814206.1|4116545_4117640_-|porin	gnl|CDD|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	8.91426e-53
NZ_CP020819.1|WP_003814195.1|4111257_4111470_+|zinc-finger-domain-containing-protein	gnl|CDD|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	5.98518e-12
NZ_CP020819.1|WP_003814201.1|4113128_4114646_-|M48-family-metallopeptidase	gnl|CDD|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	4.64199e-95

Protein sequences

>NZ_CP020819.1|WP_010929121.1|4107305_4108739_-|DEAD/DEAH-box-helicase
MTESTSSDAPVTDAPTRTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVARSHGRDRDAPRERGADRHRGERRTSGAAAPRQPVDELFYKPYEPANGQPASPETPKQEGRSNAPKRQLAVLLGGSRKG
>NZ_CP020819.1|WP_003814185.1|4106910_4107294_+|thioredoxin-family-protein
MPLHVPGSDIPTLRAALARSDAWLVACFCAAWCDTCQQYRPKLLELARARPGHTFAWIDIEDHPDLLGEEDVENFPTLLVQAHGKVLFYGPMLPHIGHLERLLDSLDPQGRPVATGLPDVARLLAAA
>NZ_CP020819.1|WP_003814183.1|4106048_4106849_-|EI24-domain-containing-protein
MTVPRPESIIPPAGNAATGAAGIARAFKRALVSQCHPNMLFAVLLPFLIALLGAILLLWLFWTPLNEWLRFEASQWQAINQVDDWMVAAGLFSLKIYLVPVIAAAILLPISGILGLAIAAVFVMPLVLRHVGGREYAGLARQGRNATAVSVWNALWVSLAFGAGWLLTLPFWLIPPMAVILSVFWWAFAFTRMLRLDAIVEHASPAERAILLKRHNSGFWLIGLVCSLLNLLPPAWIILPVFSGLVYAHYGLDALQRLRQERTIDV
>NZ_CP020819.1|WP_003814179.1|4105181_4105994_-|competence/damage-inducible-protein-A
MAAESARRIGLIIVGDEILSGRRQDKHFSKVVELLGARGLKLSWAELLPDDRATLAAVLRRSFASGDIVFSCGGIGGTPDDHTRQAAAEALDLPLALHPEAEQAIALRAAEMAAKGQGTADMGTPENQQRLQMGMFPRGCEIVPNPYNRIPGFFVRDHTFVPGFPVMAWPMLEWTLDTRYRALHHQVRHAEHSFLVFDMPESRITPAMVEIEQRWPGVRAFSLPSVGETGGPSHIDLGVKGEPEAAAQALAFLRAEVVRLGGKLAPPAQN
>NZ_CP020819.1|WP_003814178.1|4104174_4105023_-|IclR-family-transcriptional-regulator
MSRIPNATARGPGSHSDDGAGQHPIAIQVIDRAMRLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVVGRYVERVDNGLYQLGMRLLELGSLVKGRLNVREAAIGAMRSLHKQTGQTINLSVQQGDEIVYIDRAWSERSGMQVVRAIGGRAPLHLTSTGKLFLSTYDTRLVRAYALRTGLAGHTRNSLTELDRLERELALVRRHGYARDNEELELGVRCIAAGIYDDTGKLVAGLSISAPAERLQDEWIRLLVDAAASISEALGYEPGVNGIHAPAAA
>NZ_CP020819.1|WP_033451654.1|4099579_4103974_-|dermonecrotic-toxin
MDKDESALRQLVDMALVGYDGVVEELLALPSEESGDLAGGRAKREKAEFALFGEAPNGDEPIGQDARTWFYYPKYRPVAVSNLKKMQAAIRARLEPESLILQWLIALDVYLGVLIAALSRTAISDLVFEYVKARYEIYYLLNRVPHPLAAAYLKRRRQRPVDRSGRLGSVFEHPLWFAYDELAGTVDLDADIYEQALAESIERRMDGEPDDGSLDTAGHDVWRLCRDGINRGEQAIFQASGPYGVVADAGYMRTVADLAYADALADCLHAQLRIRAQGSVDSPGDEMPRKLDAWEIAKFHLAATQQARVDLLEAAFALDYAALRDVRVYGDYRNALALRFIKREALRLLGARRGNASTMPAVAAGEYDEIVASGAANDAAYVSMAAALIAGVLCDLESAQRTLPVVLARFRPLGVLARFRRLEQETAGMLLGDQEPEPRGFISFTDFRDSDAFASYAEYAAQFNDYIDQYSILEAQRLARILALGSRMTVDQWCLPLQKVRHYKVLTSQPGLIARGIENHNRGIEYCLGRPPLTDLPGLFTMFQLHDSSWLLVSNINGELWSDVLANAEVMQNPTLAALAEPQGRFRTGRRTGGWFLGGPATEGPSLRDNYLLKLRQSNPGLDVKKCWYFGYRQEYRLPAGALGVPLFAVSVALRHSLDDLAAHAKSALYKPSEWQKFAFWIVPFYREIFFSTQDRSYRVDVGSIVFDSISLLASVFSIGGKLGSFTRTQYGNLRNFVVRQRIAGLSGQRLWRSVLKELPALIGASGLRLSRSLLVDLYEIFEPVPIRRLVAGFVSTTTVGGRNQAFLRQAFSAASSSAGRTGGQLASEWRMAGVDATGLVESTSGGRFEGIYTRGLGPLSERTEYFIVESGNAYRVIWDAYTHGWRVVNGRLPPRLTYTVPVRLNGQGHWETHLDVPGRGGAPEIFGRIRTRNLVALAAEQAAPMRRLLNQARRVALRHIDTCRSRLASPRAESDMDAAIRIFFGEPDAGLRQRIGRRLQEVRAYIGDLSPVNDVLYRAGYDLDDVATLFNAVDRNTSLGRQARMELYLDAIVDLHARLGYENARFVDLMAFHLLSLGHAATASEVVEAVSPRLLGNVFDISNVAQLERGIGNPASTGLFVMLGAYSESSPAIFQSFVNDIFPAWRQASGGGPLVWNFGPAAISPTRLDYANTDIGLLNHGDISPLRARPPLGGRRDIDLPPGLDISFVRYDRPVRMSAPRALDASVFRPVDGPVHGYIQSWTGAEIEYAYGAPAAAREVMLTDNVRIISIENGDEGAIGVRVRLDTVPVATPLILTGGSLSGCTTMVGVKEGYLAFYHTGKSTELGDWATAREGVQALYQAHLAMGYAPISIPAPMRNDDLVSIAATYDRAVIAYLGKDVPGGGSTRITRHDAGAGSVVSFDYNAAVQASAVPRLGQVYVLISNDGQGARAVLLAEDLAWAGSGSALDVLNERLVTLFPAPV
>NZ_CP020819.1|WP_033451656.1|4098508_4099486_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD
MPPISRKLSALFAAVALTGAGTALAEYPERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITGGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEALQAKVKQQVPQWAELFKKAGVEKQ
>NZ_CP020819.1|WP_003814172.1|4097543_4098122_-|TIGR01841-family-phasin
MSAIPQQVLARQKATVNSLVAAQSAMFAGFEKLVDLNLKVVRATLDEVAQQSQQAAELKDPQDVASFTSGLVQPGAEKALAYGKHVYDIVAGVQAELAQLAEAQIAEGQQQLTEAVEQFSKNAPTGSESAVALIKSSLATANSAYDSLTKAAKQAAEVAESNLNAAANASFKAASDAAEVATKAAGRNRRAA
>NZ_CP020819.1|WP_003814170.1|4096346_4097396_+|quinone-dependent-dihydroorotate-dehydrogenase
MSILFHAYPLARPALFAMDAETAHEVTLAQLQRAYDCGLTRKLLHAQPEAPATLMGLSLRNPVGLAAGLDKNGAHIDALGNLGFGFVEVGTVTPRAQPGNPKPRMFRLPRANALINRLGFNNQGLDAFIANVQRSQWRSQGGILGLNIGKNADTPIERAAEDYLIGLAGVYPHADYVTVNISSPNTKNLRALQGGDELSALLGQLQERRLALADQHQRHVPLAVKIAPDLSDDQIDAIAEILPRHGIDGVIATNTTLARDAVQGLPHAEEAGGVSGAPVHELSLRVIERLRSRLGDAVAIIGVGGILSGRQASEKMAAGAQAVQLYTGLIYRGPALVGECVRALAQGSR
>NZ_CP020819.1|WP_003820991.1|4095571_4096306_+|arginyltransferase
MPDMSQLKELPFSTLQFYATAPYPCSYLPGRQARSQVAAPGHLINAGTYSQLVEQGFRRSGLFTYRPHCDNCHACVPVRVDAARFEPNRTQRRAWRSHQALRAFVAELAWSPEHYDLYTRYQQGRHPGGGMDEDSRTQYAQFLLTTRVNTRLVEFRTPQGQLAMISIIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQIEQCRTLDLPWLYLGYWIADSRKMAYKANFRPLQMHVDGAWRETPP
>NZ_CP020819.1|WP_003814188.1|4109026_4109356_-|AzlD-domain-containing-protein
MSDRDLYVYGAILLLTLCSVLTRAGFMLFGDYIPLPDGVRRALRYAPAAALTAIVVPDLLPWKAGLGPAFDYKLVAGVLAIMAFLRTRSAVLVIVVGMVALWGLRWLAG
>NZ_CP020819.1|WP_003814191.1|4109358_4110027_-|AzlC-family-ABC-transporter-permease
MRAITPALIATGTWGMVTGVAMVKSGLTESMALAMTLLMYAGSAQLTSLPLIATGAPLWLIFAAGFVVNLRFLIFGAALHPYFRHMSWPRRLGLGYFTTDMGFVLFMPRFGDAAERGTREQLWFFLGTVAPGWMVWQVTSIVGIYLGSLVPEAWSLDFAAVLALLAITVPLANSKPMLVSMLAAGMVAWVGQLLPLRLGLAAAVVAGIVAGIWAERFFKGRT
>NZ_CP020819.1|WP_003814193.1|4110290_4111211_+|branched-chain-amino-acid-transaminase
MSMSDRDGFIWYDGKLVPWREATTHVLTHSLHYGLSVFEGVRAYETAAGTAIFRLQDHTNRLFNSAHIYQIPLPYDRDTLNEAQREVVRANGLASCYLRPLAFYGSEKMGVSPKGAQVHVAIAAWPWGAYLGETALAQGIRVKVSSFARQHVNVTMPRAKVATTYANSIIANAEALQDGYDEALLLDTEGFVAEGAGENIFIVKDGVLCEPEIASALTGITRSTIHALAADLGLRVVTKRLTRDDVYIADEAFFTGTAAEVTPIREVDNRQIGAGRRGPVTEKLQQAFFDLVNGRNPKYQHWLTPV
>NZ_CP020819.1|WP_003814195.1|4111257_4111470_+|zinc-finger-domain-containing-protein
MTAAAQAAVPAHDAIEVGAEDLPVYCPGPKAPLWSMHPRVFLDVTHTGQASCPYCGAAYRLKPGTVVHGH
>NZ_CP020819.1|WP_003814197.1|4111492_4111915_+|DUF4440-domain-containing-protein
MFATPDEAEHAFYEALEHADLDRLMQVWSDDEEIACIHPGGLRIVGHTAVHESWQQVLANGPLHLRPLRPLVMQSMMCAVHVLVEQVTVMTREGAQFANCYATNVYHKGPAGWRMVLHHASQAPAEAGVLDLHDFPDRLH
>NZ_CP020819.1|WP_010931458.1|4111931_4113032_+|alpha/beta-fold-hydrolase
MAASRIDLTPCPVPPWLPDRHSQTVYAAALAQYHRIAFVRERVDTPDTDFVDFDWTGPGLFPHKTAEGAAPAGPAPQGNGRIAAARWITATDWASLPQTADTPALILFHGLEGGSASRYAQSIAHYFRARGWIVVIAHFRGCSGVPNRLARAYYSGDSAEVGFMLDTVRARIPHARWHAVGVSLGGNALLKYLGEHHDEASWLAAAAGVSVPLDLVAGGKALCTGFIARRIYTAYFLKTMRRKVLEKAKRFPGAIDVIRIAHARDLRDFDDAYTARMHGYRNALDYWTRASSKPWLAHIKTPTLVLNARNDPFLPESALPIPAECSDSVLLHQPAEGGHAGFPTGPFPAHLNWLPQRLGRFFEMGS
>NZ_CP020819.1|WP_003814201.1|4113128_4114646_-|M48-family-metallopeptidase
MNRWNLTFSPSLGRRALAAALSLALGLPVAPAVGQPSGLPSMGAASASELSPMLERQLGDAIMAQGRRDPTYINDPELRQYLTTMGRKLASFAPGAAPHVEMFGVRDPEINAFAMPGGYIGVNTGLIVSSASESELAAVLAHEIGHVAQRHIARGMTQQNQNSMVMLASLAGALLAALAGGGGNLAMGVAAFGQAAAINRQLGFSRDAEREADRTGLQMLAKAGYDPDGMAQMFSRLMNASRLNEGMGGGAWASTHPLSIDRMSDVQNRIRGLPGSRHVDSDDFWFIRAKMRVAQGRDALSLRTAQQQLQDESRALSGVRQAAAFYGLALYAFQRNDLAQARAFLEQAGAGGRSSPQMARLAIDVAVAAKDNDQALALAQAAVKRWPDRKALGIAYAQALQAAGRHADAQAYLRERARQWGGDEPSLYQLLAQSEERTGHPVDARRNMARYYDLTGAYASAESQLQQARGLSNDFYEQSQIDVSIREIKQKLADERQLLERFKSG
>NZ_CP020819.1|WP_003814203.1|4114721_4115561_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MQVVRKAVFPVAGMGTRFLPATKAMPKEMLPVVDKPLIQYAVEEAVAAGITDLIFVTGRNKRAIEDHFDAAPELETDLEAKGKHELLALVRDILPAHVNCLYIRQSAPLGLGHAVLTAAPAVGNEPFAVLLADDLIDADTPVLKQLIDVAVARQGSVLGVQEVPREDTRKYGIVASQPVDARTERVTHIVEKPAPEQAPTTLAVVGRYVLEAAIFDHLRATTVGAGNEIQLTDGIAALLRERDVYAHRYDGKRYDCGSKAGMFQATVALGRKYHGLIPE
>NZ_CP020819.1|WP_003814205.1|4115582_4116464_-|cytochrome-c-oxidase-assembly-protein
MTRMDWLEWLIPWEFSPTLVAAFVVAIVLFVRGQRVHHVTAARQWLFWSGMVLLYLSMHTRLDYYAERMFFIHRAQHLVLHHLGPLLVMAAFPGSAMRAGLPMAWRVRLRDFLRTGTGRALAAVLTHKVFVPTLFVFLVLVWLLPSVQFYSMLDWRLYRLMNWSVVISGFMYWNLILDRRPSPPAAMTPGGRVLSPALTMAPQMVAGAVIAFTERDLYPLFELCGRAIAMSAQTDQTIGGLTMWIPAALVEVVGLLVALGTLMRLSGKGRLRPQDRAARARQRAAGSPTSPAA
>NZ_CP020819.1|WP_003814206.1|4116545_4117640_-|porin
MRRLLVVAAMAAGSSSVFWSVAPARAANQLELYGVVDVGLATTRVSGLGTRQQVLGGGQTDNLWGLRGTEELDGGWRASFGLESGFDAANGTRNDDARLFDYGTWVGLGHAGVGELSLGRQQSIGLQYGGQLEIASWRDMGMGALFKASDNYRVNNLVNYLSPEFSGWQWGVGYAFDVESGDTGRFDRSPAFSTGLKYEDGPLLAAFTWDKLNLHDTSATGGRSPQALQAGFTYDFEALKMALAWSRQRNGFVGLNGGGQIGLGPEPFAHGGAINAWLLGLEVPVHGNGAWLVQGSMARPDWHWANGQQASKAYVVTLGYRQDLSARTSLYAYGGYMKGYDPEDPFASDVGRATRFGVGMTQRF

Crispr_ID: NZ_CP020819_8

• CRISPR_ID: NZ_CP020819_8
• CRISPR_location: 4397923-4398016
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_8

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

spacers of NZ_CP020819_8

>8.1|4397949|42|NZ_CP020819|CRISPRCasFinder
CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC

CRISPR arrays and Neighbor proteins around NZ_CP020819_8

CRISPR arrays

The CRISPR arrays of NZ_CP020819_8

>merge|NZ_CP020819|8|4397923-4398016|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>NZ_CP020819|8|8|4397923-4398016|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_033452647.1|4395568_4397692_-|elongation-factor-G	unknown	unknown	gnl|CDD|234569
NZ_CP020819.1|WP_010929793.1|4387602_4388631_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|366103
NZ_CP020819.1|WP_157734664.1|4404794_4405067_+|hypothetical-protein	unknown	unknown	gnl|CDD|377229
NZ_CP020819.1|WP_003814689.1|4391981_4392767_-|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl|CDD|181723
NZ_CP020819.1|WP_003814709.1|4402354_4403278_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|378820
NZ_CP020819.1|WP_003814697.1|4395053_4395572_+|MgtC/SapB-family-protein	unknown	unknown	gnl|CDD|224204
NZ_CP020819.1|WP_003814681.1|4389955_4390933_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176106
NZ_CP020819.1|WP_003814674.1|4386343_4387537_-|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl|CDD|180775
NZ_CP020819.1|WP_003814694.1|4394187_4394943_-|TerC-family-protein	unknown	unknown	gnl|CDD|223930
NZ_CP020819.1|WP_003820700.1|4398661_4399006_-|TIGR01244-family-phosphatase	unknown	unknown	gnl|CDD|225984
NZ_CP020819.1|WP_003814685.1|4390943_4391915_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270234
NZ_CP020819.1|WP_003814678.1|4388657_4389830_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
NZ_CP020819.1|WP_003814711.1|4403283_4403739_-|multidrug/biocide-efflux-PACE-transporter	unknown	unknown	gnl|CDD|226610
NZ_CP020819.1|WP_003814713.1|4403735_4404839_-|ChbG/HpnK-family-deacetylase	unknown	unknown	gnl|CDD|212118
NZ_CP020819.1|WP_033452651.1|4405026_4406646_-|glycosyltransferase-family-39-protein	unknown	unknown	gnl|CDD|224720
NZ_CP020819.1|WP_003814691.1|4392759_4393992_-|CoA-transferase	unknown	unknown	gnl|CDD|367110
NZ_CP020819.1|WP_003814704.1|4399105_4400506_-|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl|CDD|224089
NZ_CP020819.1|WP_010927085.1|4401605_4402265_+|LysE-family-translocator	unknown	unknown	gnl|CDD|224199
NZ_CP020819.1|WP_003814706.1|4400694_4401609_+|DMT-family-transporter	unknown	unknown	gnl|CDD|223769
NZ_CP020819.1|WP_003814701.1|4398102_4398573_-|universal-stress-protein	unknown	unknown	gnl|CDD|366180

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_033452647.1|4395568_4397692_-|elongation-factor-G	gnl|CDD|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP020819.1|WP_010929793.1|4387602_4388631_-|acyl-CoA-dehydrogenase	gnl|CDD|366103	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	3.23873e-12
NZ_CP020819.1|WP_157734664.1|4404794_4405067_+|hypothetical-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.3327e-06
NZ_CP020819.1|WP_003814689.1|4391981_4392767_-|crotonase/enoyl-CoA-hydratase-family-protein	gnl|CDD|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	2.06175e-156
NZ_CP020819.1|WP_003814709.1|4402354_4403278_+|alpha/beta-fold-hydrolase	gnl|CDD|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.97616e-21
NZ_CP020819.1|WP_003814697.1|4395053_4395572_+|MgtC/SapB-family-protein	gnl|CDD|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.52093e-44
NZ_CP020819.1|WP_003814681.1|4389955_4390933_+|LysR-family-transcriptional-regulator	gnl|CDD|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
NZ_CP020819.1|WP_003814674.1|4386343_4387537_-|acetyl-CoA-C-acyltransferase	gnl|CDD|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	6.15168e-175
NZ_CP020819.1|WP_003814694.1|4394187_4394943_-|TerC-family-protein	gnl|CDD|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP020819.1|WP_003820700.1|4398661_4399006_-|TIGR01244-family-phosphatase	gnl|CDD|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP020819.1|WP_003814685.1|4390943_4391915_-|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl|CDD|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP020819.1|WP_003814678.1|4388657_4389830_-|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	6.87275e-84
NZ_CP020819.1|WP_003814711.1|4403283_4403739_-|multidrug/biocide-efflux-PACE-transporter	gnl|CDD|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.35069e-54
NZ_CP020819.1|WP_003814713.1|4403735_4404839_-|ChbG/HpnK-family-deacetylase	gnl|CDD|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.3947e-92
NZ_CP020819.1|WP_033452651.1|4405026_4406646_-|glycosyltransferase-family-39-protein	gnl|CDD|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.23603e-50
NZ_CP020819.1|WP_003814691.1|4392759_4393992_-|CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
NZ_CP020819.1|WP_003814704.1|4399105_4400506_-|PLP-dependent-aminotransferase-family-protein	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.52472e-110
NZ_CP020819.1|WP_010927085.1|4401605_4402265_+|LysE-family-translocator	gnl|CDD|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
NZ_CP020819.1|WP_003814706.1|4400694_4401609_+|DMT-family-transporter	gnl|CDD|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	8.05606e-10
NZ_CP020819.1|WP_003814701.1|4398102_4398573_-|universal-stress-protein	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30

Protein sequences

>NZ_CP020819.1|WP_033452647.1|4395568_4397692_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLIFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>NZ_CP020819.1|WP_003814697.1|4395053_4395572_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NZ_CP020819.1|WP_003814694.1|4394187_4394943_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP020819.1|WP_003814691.1|4392759_4393992_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>NZ_CP020819.1|WP_003814689.1|4391981_4392767_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP020819.1|WP_003814685.1|4390943_4391915_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP020819.1|WP_003814681.1|4389955_4390933_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP020819.1|WP_003814678.1|4388657_4389830_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP020819.1|WP_010929793.1|4387602_4388631_-|acyl-CoA-dehydrogenase
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAVAMAARLACASGVLFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAAHA
>NZ_CP020819.1|WP_003814674.1|4386343_4387537_-|acetyl-CoA-C-acyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA
>NZ_CP020819.1|WP_003814701.1|4398102_4398573_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP020819.1|WP_003820700.1|4398661_4399006_-|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP020819.1|WP_003814704.1|4399105_4400506_-|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP020819.1|WP_003814706.1|4400694_4401609_+|DMT-family-transporter
MSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>NZ_CP020819.1|WP_010927085.1|4401605_4402265_+|LysE-family-translocator
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>NZ_CP020819.1|WP_003814709.1|4402354_4403278_+|alpha/beta-fold-hydrolase
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>NZ_CP020819.1|WP_003814711.1|4403283_4403739_-|multidrug/biocide-efflux-PACE-transporter
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>NZ_CP020819.1|WP_003814713.1|4403735_4404839_-|ChbG/HpnK-family-deacetylase
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>NZ_CP020819.1|WP_157734664.1|4404794_4405067_+|hypothetical-protein
MVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>NZ_CP020819.1|WP_033452651.1|4405026_4406646_-|glycosyltransferase-family-39-protein
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRELALSLRGELRPNDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG

Crispr_ID: NZ_CP020819_9

• CRISPR_ID: NZ_CP020819_9
• CRISPR_location: 4533483-4533563
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_9

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGC	CRISPRCasFinder

spacers of NZ_CP020819_9

>9.1|4533507|33|NZ_CP020819|CRISPRCasFinder
GCCTGCAAGATTTCATGGCATCTGCCCGTGCGT

CRISPR arrays and Neighbor proteins around NZ_CP020819_9

CRISPR arrays

The CRISPR arrays of NZ_CP020819_9

>merge|NZ_CP020819|9|4533483-4533563|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCGCCTGCAAGATTTCATGGCATCTGCCCGTGCGTGTGCCTGTCCCCGCCGGGACAGGC

>NZ_CP020819|9|9|4533483-4533563|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGC	GCCTGCAAGATTTCATGGCATCTGCCCGTGCGT
GTGCCTGTCCCCGCCGGGACAGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_033452674.1|4519560_4523067_+|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl|CDD|237279
NZ_CP020819.1|WP_003814928.1|4523372_4526300_+|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl|CDD|235966
NZ_CP020819.1|WP_003814946.1|4533667_4534171_-|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl|CDD|225675
NZ_CP020819.1|WP_003814951.1|4537392_4538739_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl|CDD|236307
NZ_CP020819.1|WP_033452742.1|4527841_4528504_+|histone	unknown	unknown	gnl|CDD|237855
NZ_CP020819.1|WP_003814937.1|4530699_4531827_-|membrane-bound-O-acyltransferase	unknown	unknown	gnl|CDD|274974
NZ_CP020819.1|WP_033452676.1|4526321_4527524_+|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl|CDD|235968
NZ_CP020819.1|WP_003814941.1|4531956_4533084_-|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD	unknown	unknown	gnl|CDD|368189
NZ_CP020819.1|WP_033452679.1|4535297_4536425_-|DUF3426-domain-containing-protein	unknown	unknown	gnl|CDD|378759
NZ_CP020819.1|WP_010927112.1|4529225_4530689_-|D-alanine--poly(phosphoribitol)-ligase	unknown	unknown	gnl|CDD|341267
NZ_CP020819.1|WP_003814943.1|4533109_4533349_-|acyl-carrier-protein	unknown	unknown	gnl|CDD|223314
NZ_CP020819.1|WP_003814956.1|4541812_4542406_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|225692
NZ_CP020819.1|WP_003814939.1|4531834_4531960_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_003814933.1|4528642_4529218_+|YggT-family-protein	unknown	unknown	gnl|CDD|376765
NZ_CP020819.1|WP_003814947.1|4534344_4535286_-|carbohydrate-kinase-family-protein	unknown	unknown	gnl|CDD|238917
NZ_CP020819.1|WP_003814953.1|4539287_4539722_-|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|235443
NZ_CP020819.1|WP_033452681.1|4538748_4539198_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl|CDD|235777
NZ_CP020819.1|WP_003814954.1|4539800_4540349_-|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl|CDD|239264
NZ_CP020819.1|WP_003814950.1|4536450_4537374_-|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl|CDD|283886
NZ_CP020819.1|WP_003814955.1|4540431_4541802_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl|CDD|130153

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_033452674.1|4519560_4523067_+|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl|CDD|237279	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein.	0
NZ_CP020819.1|WP_003814937.1|4530699_4531827_-|membrane-bound-O-acyltransferase	gnl|CDD|274974	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB. Members of this protein family are DltB, part of a four-gene operon for D-alanyl-lipoteichoic acid biosynthesis that is present in the vast majority of low-GC Gram-positive organisms. This protein may be involved in transport of D-alanine across the plasma membrane. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.72878e-50
NZ_CP020819.1|WP_003814950.1|4536450_4537374_-|50S-ribosomal-protein-L11-methyltransferase	gnl|CDD|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.01589e-110
NZ_CP020819.1|WP_003814951.1|4537392_4538739_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl|CDD|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP020819.1|WP_033452742.1|4527841_4528504_+|histone	gnl|CDD|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	7.00543e-15
NZ_CP020819.1|WP_003814928.1|4523372_4526300_+|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl|CDD|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP020819.1|WP_033452676.1|4526321_4527524_+|ribonucleotide-diphosphate-reductase-subunit-beta	gnl|CDD|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_CP020819.1|WP_003814941.1|4531956_4533084_-|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD	gnl|CDD|368189	pfam04914, DltD, DltD protein. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis.	1.09917e-76
NZ_CP020819.1|WP_033452679.1|4535297_4536425_-|DUF3426-domain-containing-protein	gnl|CDD|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	1.69179e-42
NZ_CP020819.1|WP_010927112.1|4529225_4530689_-|D-alanine--poly(phosphoribitol)-ligase	gnl|CDD|341267	cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) and similar proteins. This family includes D-alanyl carrier protein ligase DltA and aliphatic beta-amino acid adenylation enzymes IdnL1 and CmiS6. DltA incorporates D-ala in techoic acids in gram-positive bacteria via a two-step process, starting with adenylation of D-alanine that transfers D-alanine to the D-alanyl carrier protein. IdnL1, a short-chain aliphatic beta-amino acid adenylation enzyme, recognizes 3-aminobutanoic acid, and is involved in the synthesis of the macrolactam antibiotic incednine. CmiS6 is a medium-chain beta-amino acid adenylation enzyme that recognizes 3-aminononanoic acid, and is involved in the synthesis of cremimycin, also a macrolactam antibiotic. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	0
NZ_CP020819.1|WP_003814943.1|4533109_4533349_-|acyl-carrier-protein	gnl|CDD|223314	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	3.22825e-07
NZ_CP020819.1|WP_003814956.1|4541812_4542406_+|alpha/beta-fold-hydrolase	gnl|CDD|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	8.39901e-54
NZ_CP020819.1|WP_003814955.1|4540431_4541802_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl|CDD|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP020819.1|WP_003814946.1|4533667_4534171_-|glycine-zipper-2TM-domain-containing-protein	gnl|CDD|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	3.3638e-32
NZ_CP020819.1|WP_003814947.1|4534344_4535286_-|carbohydrate-kinase-family-protein	gnl|CDD|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	8.05228e-106
NZ_CP020819.1|WP_003814953.1|4539287_4539722_-|type-II-3-dehydroquinate-dehydratase	gnl|CDD|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.95712e-86
NZ_CP020819.1|WP_003814933.1|4528642_4529218_+|YggT-family-protein	gnl|CDD|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	2.04276e-07
NZ_CP020819.1|WP_033452681.1|4538748_4539198_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl|CDD|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	2.94729e-77
NZ_CP020819.1|WP_003814954.1|4539800_4540349_-|TlpA-family-protein-disulfide-reductase	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	8.20462e-37

Protein sequences

>NZ_CP020819.1|WP_003814943.1|4533109_4533349_-|acyl-carrier-protein
MHTEQELHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITLAVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ
>NZ_CP020819.1|WP_003814941.1|4531956_4533084_-|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD
MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWGTQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVPYRFFPQELKVPTLAYGHAMFQSYGIVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPATREQMQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWPAAARLDAGRWHDLLGQARGIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMTRPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERFDPVADAIKGMCARYGMGCLDMYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR
>NZ_CP020819.1|WP_003814939.1|4531834_4531960_-|hypothetical-protein
MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF
>NZ_CP020819.1|WP_003814937.1|4530699_4531827_-|membrane-bound-O-acyltransferase
MELFGSFAFFGGALFGGLGLLLYRALGLPWRLGYRHLIGALCLAVWLAVFWTRPYQPLGLLAVASAALWAMRRGHLPTWAAVLLTMAPLLLLKCGITTMTGMLGLSFATFRAVDVLLFAPRNERISPLDYCIYLFFPLTLLAGPMYRWRNFQADLKRGYEGVTLETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFAGYSSMAIGVGMLFGFTLPVNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSKTAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLMFGAYSVGHNLLVQHARTRPALQAFLARRPVQWAGRALTLILAALALYVFSGRSPI
>NZ_CP020819.1|WP_010927112.1|4529225_4530689_-|D-alanine--poly(phosphoribitol)-ligase
MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEACQWAARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAGAPFVPVDTIYPPERVRRIVEIVRAAAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWLRDGLALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLARLAGSGVTVWVSTPSFAHQQLANRDFSPQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPTEATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDEICIVGDHVMRGYLNRPDLNQAKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGVAGGACAVLRRPDGTAVRVIGFVAQRTVEQASFQLPAALQQWKAQLTGRLPSYMVPSELVACPDLPVSNNHKIDRKKLLEIYAAIPAAA
>NZ_CP020819.1|WP_003814933.1|4528642_4529218_+|YggT-family-protein
MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLARAIYQGTNWLVLPLRRVIPATGSIDWTSLIAAWVAALIYLILVWLSAVGALPPASALPSAMGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPRTAIDFSPLVLLIGAQILLMMVARLAYGIFGV
>NZ_CP020819.1|WP_033452742.1|4527841_4528504_+|histone
MATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAAKKPAVKKVAAKKPAAKKVAKKAVAKKAVAKKPAAKKVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAAAKKAPAKKAAAARKPAAKKPAAKKPAAKKAAPKKPATPPSTAAAPGAKTALNPAASWPFPTGGRP
>NZ_CP020819.1|WP_033452676.1|4526321_4527524_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLNWEEENIATKPATSPAPAPAGGREAAPAVRAATGVFGDAALPTPTAPQHAASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE
>NZ_CP020819.1|WP_003814928.1|4523372_4526300_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGVRRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ
>NZ_CP020819.1|WP_033452674.1|4519560_4523067_+|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MDGTPAVDPHIDLDYQLGDNLTRTSGRVFLTGTQALVRMMLTQRRLDRDRGLNTAGFVSGYRGSPLGGFDMAMWKAGQALADNQVSFLPGINEDMAATAVMGTQQAGVRADRKVDGVFAMWYGKGPGVDRAGDALHHGNAAGASRHGGVLVVVGDDHTAVSSSIPHASEASLIGWHMPIVHPASIDEYETFALWGWALSRYSGAWVAFKAVSETVECGQSFVLEPPAAYEMPDDPELPAEQLEYTARDFLSPAVELRMHRRLRAVRAFARRHSLDRLVCAAPRATLGIVTVGKAHLDTMEALHRLGLDTVGAQAPVRIYKPGLTWPLDGPRLIEFAQGLRHILVIEEKGAVVESQIKDLLFNLPQRPSVAGKTGLDGAELIPAAGQLRPSLLAAPLAAWLRRAGHMPGGAAPAAFACPAPLSNDADGMRRRPYFCSGCPHSTSTKVPEGSQALAGVGCHYMAAWMDRDTGGLTQMGGEGADWIGLSPYIEMPHVFQNMGEGTYYHSGYLAIRQAVAARANITYKILFNDAVAMTGGQPVDGPISVPQICQQLRGENVARIVVTTDEPEKYRGVALGAGIDVHHRRDLDAVQRELRATPGVTVLIHDQTCAAEKRRRRKKNQFPDPPRRLLINSAVCEGCGDCGVQSNCLSVVPLETPYGRKRAIDQSSCNKDYSCVEGFCPSFVSVMGGKPRKSAAPAADHERLRARIARLPEPRPAPLEAPYRLLVAGMGGTGVITIGAIVSMAAHLQGLSAAVLDLTGLAQKGGTVVSHIRLAPSGTANGPVRLDWQQADAAILCDPVAAVAPDSLGALRRDHTRTTVNTYVAPVSDFTRNPDAPLRADALLAKIRHAAGEHVAALDAHAAAQALFGDSILSNMFMLGHAWQRGDVPLALAALARAIELNGVAVAANRAAFDAGRLAAHEPQSMAQALRPAAQVVQLHIPESFERAVERRVADLTAYQSAAYAQAYRDLVEQVAARERELAPAARAPRLAMAVARSLFKLMAYKDEYEVARLYTDDAFRAQLDSQFEGDYSLRLHLAPPLLARKDPRTGAPRKITLGPRTLTLMKALARLKGLRGTWFDPFGHTAERRMERALVAEYRATVIQLLAGLSVDRLAQAATIAALAETVRGYGHVKQASVRKYRDELERQLRRYQEPTGSPDVSLRQTA
>NZ_CP020819.1|WP_003814946.1|4533667_4534171_-|glycine-zipper-2TM-domain-containing-protein
MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTYGQAQREQIVRTGTVTGVRPITIQNDKSSGVGMVAGGALGGVAGNAVGGGTGRTIATVGGVILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAGPTRVTPY
>NZ_CP020819.1|WP_003814947.1|4534344_4535286_-|carbohydrate-kinase-family-protein
MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMRKEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYLARLSGLGIDVSRIQVVPGTFTAQCFITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARGIPFIFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIASGLRAAVVTRGAHGATVMAGGQTIEVAPVQAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGAIKIASRGPQNHAPSRSEIDALMRANYGIGLPD
>NZ_CP020819.1|WP_033452679.1|4535297_4536425_-|DUF3426-domain-containing-protein
MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVPAPDAGAPRAAAPPVPSAPPVPSAPPSDPPFDPPYAHRAASEPAAPATQAPPAVLRGRADMQRGDAPPVDEDEPDAMADGAPEDEADWDAAPRLESAEAGWRPILPRDPAHDDREPAFRIGRTATACAAADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVLALAAQLVYVYRGAIAGAAPALRPVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAAQGDDARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARKIILPQDYLPSQAGPAFAAGSEINLAIPVEVAGLQVNGYQLDKFFP
>NZ_CP020819.1|WP_003814950.1|4536450_4537374_-|50S-ribosomal-protein-L11-methyltransferase
MRELVLNCREAQADALSDALLEAGVLSVSVEDADLGTEAERPLFGEPGTEPQVQAWERNCVVALLPDGADPAQILEQAIAAAGLDPALAHGWSLREVPDADWVRLTQSQFGPIPISERLWIVPSWHRDDPAVPGLVPDAARDAIHIELDPGLAFGTGSHPTTHLCLAWLEAELPAGARLLDYGCGSGILAIAARKLGAGETVAVDIDPQAVQSTVDNAEVNQVRLQAMLPDALPAGEFQVVVANILSNPLKVLAPMLAGRVAPGGHLVLSGVLERQADEVAAAYAPWLTMSVWRERDGWVCLHGVKA
>NZ_CP020819.1|WP_003814951.1|4537392_4538739_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLADESVCIGPAPSRESYLNMPALISAAEVTDAEAIHPGYGFLAENADFAERVEKSGFVFIGPRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKASGGGGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEKFTLRQRDIQFKGHALECRINAEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQALARMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP
>NZ_CP020819.1|WP_033452681.1|4538748_4539198_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALQPVAYHMPEAVAPAAAPAAAAVPAAEAAPAAPQGHVVKAPMVGTFYRAPNPGAAPFVDVGQSVKEGDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG
>NZ_CP020819.1|WP_003814953.1|4539287_4539722_-|type-II-3-dehydroquinate-dehydratase
MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGVALTSWQSNHEGALVERIQAAAADGTDFIIINAAAYTHTSVAIRDALAAVAIPFIEVHLSNLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH
>NZ_CP020819.1|WP_003814954.1|4539800_4540349_-|TlpA-family-protein-disulfide-reductase
MNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSAAAPAEGAGDPLAQLRQLALPDLQGTPRKLADWGGQPLVVNFWATWCAPCVKEMPELDALQKKYPQVRFVGIGVDTADNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLLLSADGSMKRKILGQIVYDDLDRSVAGLSA
>NZ_CP020819.1|WP_003814955.1|4540431_4541802_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHLHILGICGTFMGGLALIARSAGHKVTGCDAGVYPPMSTQLAEQGIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEAILDSGARYISGPQWLGEHILPGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPTDAPALERVLERGCWTPVARFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFAHHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDPARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR
>NZ_CP020819.1|WP_003814956.1|4541812_4542406_+|alpha/beta-fold-hydrolase
MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPRQAAELALALAREQLAGQQDPRRLTVIGSSLGGYYATWLAERLGCQAVLLNPAVQAARDLATQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMRDRYPGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH

Crispr_ID: NZ_CP020819_10

• CRISPR_ID: NZ_CP020819_10
• CRISPR_location: 4676571-4676654
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_10

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

spacers of NZ_CP020819_10

>10.1|4676594|38|NZ_CP020819|CRISPRCasFinder
ATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGG

CRISPR arrays and Neighbor proteins around NZ_CP020819_10

CRISPR arrays

The CRISPR arrays of NZ_CP020819_10

>merge|NZ_CP020819|10|4676571-4676654|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGGGGTGCCTGTCCCCGCGGGGACAG

>NZ_CP020819|10|10|4676571-4676654|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGG
GGTGCCTGTCCCCGCGGGGACAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003815193.1|4677758_4678661_+|acetylglutamate-kinase	unknown	unknown	gnl|CDD|234869
NZ_CP020819.1|WP_003815181.1|4668577_4669864_-|cytochrome-c	unknown	unknown	gnl|CDD|365823
NZ_CP020819.1|WP_003815196.1|4680244_4681738_+|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl|CDD|279307
NZ_CP020819.1|WP_003815184.1|4671667_4672618_+|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl|CDD|223868
NZ_CP020819.1|WP_003815191.1|4676060_4676552_+|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl|CDD|239264
NZ_CP020819.1|WP_003815194.1|4678660_4679407_+|pyrimidine-5'-nucleotidase	unknown	unknown	gnl|CDD|319791
NZ_CP020819.1|WP_010927137.1|4674188_4674722_+|YraN-family-protein	unknown	unknown	gnl|CDD|173148
NZ_CP020819.1|WP_003815182.1|4669874_4670627_-|c-type-cytochrome	unknown	unknown	gnl|CDD|225418
NZ_CP020819.1|WP_003815183.1|4670798_4671671_+|RNase-adapter-RapZ	unknown	unknown	gnl|CDD|235450
NZ_CP020819.1|WP_003815198.1|4682829_4683966_-|rod-shape-determining-protein-RodA	unknown	unknown	gnl|CDD|274033
NZ_CP020819.1|WP_003815197.1|4681748_4682804_+|Ldh-family-oxidoreductase	unknown	unknown	gnl|CDD|376860
NZ_CP020819.1|WP_003815203.1|4686478_4687363_-|rod-shape-determining-protein-MreC	unknown	unknown	gnl|CDD|237560
NZ_CP020819.1|WP_003815192.1|4676708_4677497_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|224381
NZ_CP020819.1|WP_010927138.1|4679456_4680032_+|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl|CDD|181894
NZ_CP020819.1|WP_003815190.1|4675320_4676064_+|BON-domain-containing-protein	unknown	unknown	gnl|CDD|182907
NZ_CP020819.1|WP_003815185.1|4672614_4673187_-|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl|CDD|223427
NZ_CP020819.1|WP_003815186.1|4673183_4674122_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|223390
NZ_CP020819.1|WP_003815202.1|4685928_4686492_-|rod-shape-determining-protein-MreD	unknown	unknown	gnl|CDD|274574
NZ_CP020819.1|WP_003815201.1|4683962_4685915_-|penicillin-binding-protein-2	unknown	unknown	gnl|CDD|274573
NZ_CP020819.1|WP_003815188.1|4674721_4675324_+|phosphoheptose-isomerase	unknown	unknown	gnl|CDD|237567

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003815193.1|4677758_4678661_+|acetylglutamate-kinase	gnl|CDD|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.71108e-158
NZ_CP020819.1|WP_003815181.1|4668577_4669864_-|cytochrome-c	gnl|CDD|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.18466e-10
NZ_CP020819.1|WP_003815196.1|4680244_4681738_+|DASS-family-sodium-coupled-anion-symporter	gnl|CDD|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.68833e-115
NZ_CP020819.1|WP_003815184.1|4671667_4672618_+|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl|CDD|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	3.79567e-55
NZ_CP020819.1|WP_003815191.1|4676060_4676552_+|TlpA-family-protein-disulfide-reductase	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.58284e-41
NZ_CP020819.1|WP_003815194.1|4678660_4679407_+|pyrimidine-5'-nucleotidase	gnl|CDD|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.14842e-46
NZ_CP020819.1|WP_010927137.1|4674188_4674722_+|YraN-family-protein	gnl|CDD|173148	PRK14685, PRK14685, hypothetical protein; Provisional.	1.2057e-90
NZ_CP020819.1|WP_003815182.1|4669874_4670627_-|c-type-cytochrome	gnl|CDD|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.39738e-12
NZ_CP020819.1|WP_003815183.1|4670798_4671671_+|RNase-adapter-RapZ	gnl|CDD|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18739e-149
NZ_CP020819.1|WP_003815198.1|4682829_4683966_-|rod-shape-determining-protein-RodA	gnl|CDD|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.23854e-160
NZ_CP020819.1|WP_003815197.1|4681748_4682804_+|Ldh-family-oxidoreductase	gnl|CDD|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.11307e-125
NZ_CP020819.1|WP_003815203.1|4686478_4687363_-|rod-shape-determining-protein-MreC	gnl|CDD|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	9.0892e-90
NZ_CP020819.1|WP_003815192.1|4676708_4677497_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl|CDD|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.17353e-136
NZ_CP020819.1|WP_010927138.1|4679456_4680032_+|nucleoid-occlusion-factor-SlmA	gnl|CDD|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.59741e-107
NZ_CP020819.1|WP_003815190.1|4675320_4676064_+|BON-domain-containing-protein	gnl|CDD|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.20064e-42
NZ_CP020819.1|WP_003815185.1|4672614_4673187_-|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl|CDD|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	7.98182e-54
NZ_CP020819.1|WP_003815186.1|4673183_4674122_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.54075e-109
NZ_CP020819.1|WP_003815202.1|4685928_4686492_-|rod-shape-determining-protein-MreD	gnl|CDD|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.62373e-19
NZ_CP020819.1|WP_003815201.1|4683962_4685915_-|penicillin-binding-protein-2	gnl|CDD|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP020819.1|WP_003815188.1|4674721_4675324_+|phosphoheptose-isomerase	gnl|CDD|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	1.25469e-125

Protein sequences

>NZ_CP020819.1|WP_003815191.1|4676060_4676552_+|TlpA-family-protein-disulfide-reductase
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG
>NZ_CP020819.1|WP_003815190.1|4675320_4676064_+|BON-domain-containing-protein
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAAQKAPIESGAAPAGSGSNGVEAIPIK
>NZ_CP020819.1|WP_003815188.1|4674721_4675324_+|phosphoheptose-isomerase
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>NZ_CP020819.1|WP_010927137.1|4674188_4674722_+|YraN-family-protein
MTDTATRLAFARAAQAQRRLHRRPPASPRARPGARDGGSPTQRRGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRVRAHAGYGGAAASIGASKQGRLARAAALLLPVLLRRHWPGAPPPVRFDVVAFEAGRPHWLRGAFWLAEHAPAQGRRGQDAQGWRVR
>NZ_CP020819.1|WP_003815186.1|4673183_4674122_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAGFPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>NZ_CP020819.1|WP_003815185.1|4672614_4673187_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNPPSEQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPAAAGWTPDAAHPALRQAAAELEQWFAGRRRAFEVDMQPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAHEGHRYLSRAARARRVSTTQMELPFGAA
>NZ_CP020819.1|WP_003815184.1|4671667_4672618_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPATGAGSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>NZ_CP020819.1|WP_003815183.1|4670798_4671671_+|RNase-adapter-RapZ
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>NZ_CP020819.1|WP_003815182.1|4669874_4670627_-|c-type-cytochrome
MLAFKSDLRIAMRAWRAACGVLAAAAGMLAMSQAVAQGEAALRPDTMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMAHLLNGLPDAYLREMAAYFAGQDVPYPPPARVEASAALVERGRLLVREGDPARAIPSCASCHGASLAGVAPAIPGLLGLPRDYLVAQIGSWQNGLRRAAEPDCMAQVSLKLTPEDIGAVSAWLAGQPVGHPYTPQPAGSLTLPLECGSQAGH
>NZ_CP020819.1|WP_003815181.1|4668577_4669864_-|cytochrome-c
MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSADDFWQALHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSGDDALAIGTYLKSLPAAAPPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVSYVRNSWGNQAGAVTPLDVKRTRESGAGR
>NZ_CP020819.1|WP_003815192.1|4676708_4677497_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDIAENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF
>NZ_CP020819.1|WP_003815193.1|4677758_4678661_+|acetylglutamate-kinase
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>NZ_CP020819.1|WP_003815194.1|4678660_4679407_+|pyrimidine-5'-nucleotidase
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMRMHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLLLRRRPLRG
>NZ_CP020819.1|WP_010927138.1|4679456_4680032_+|nucleoid-occlusion-factor-SlmA
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>NZ_CP020819.1|WP_003815196.1|4680244_4681738_+|DASS-family-sodium-coupled-anion-symporter
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLIFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLMLVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQTRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIHLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM
>NZ_CP020819.1|WP_003815197.1|4681748_4682804_+|Ldh-family-oxidoreductase
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRARLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLCFAGPLPGGRPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>NZ_CP020819.1|WP_003815198.1|4682829_4683966_-|rod-shape-determining-protein-RodA
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>NZ_CP020819.1|WP_003815201.1|4683962_4685915_-|penicillin-binding-protein-2
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGATDGPMQERRQ
>NZ_CP020819.1|WP_003815202.1|4685928_4686492_-|rod-shape-determining-protein-MreD
MERTKVSVPARRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>NZ_CP020819.1|WP_003815203.1|4686478_4687363_-|rod-shape-determining-protein-MreC
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD

Crispr_ID: NZ_CP020819_11

• CRISPR_ID: NZ_CP020819_11
• CRISPR_location: 4759592-4759672
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP020819_11

Consensus_repeat	Method
GTGCCTGTCCCCGCGGGGACAGGCACCT	CRISPRCasFinder

spacers of NZ_CP020819_11

>11.1|4759620|25|NZ_CP020819|CRISPRCasFinder
TGTGCCGGCCCTCCGCAACGCTCGG

CRISPR arrays and Neighbor proteins around NZ_CP020819_11

CRISPR arrays

The CRISPR arrays of NZ_CP020819_11

>merge|NZ_CP020819|11|4759592-4759672|CRISPRCasFinder
GTGCCTGTCCCCGCGGGGACAGGCACCTTGTGCCGGCCCTCCGCAACGCTCGGGTGCCTGTCCCCACGGGGACAGGCACCT

>NZ_CP020819|11|11|4759592-4759672|CRISPRCasFinder
GTGCCTGTCCCCGCGGGGACAGGCACCT	TGTGCCGGCCCTCCGCAACGCTCGG
GTGCCTGTCCCCACGGGGACAGGCACCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020819.1|WP_003815350.1|4771435_4771906_-|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl|CDD|180240
NZ_CP020819.1|WP_033452711.1|4749282_4750143_+|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl|CDD|238576
NZ_CP020819.1|WP_003815318.1|4750803_4752432_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173863
NZ_CP020819.1|WP_003815317.1|4750270_4750507_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP020819.1|WP_110115611.1|4752480_4753524_+|succinylglutamate-desuccinylase	unknown	unknown	gnl|CDD|349481
NZ_CP020819.1|WP_003815321.1|4753582_4754560_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NZ_CP020819.1|WP_003815348.1|4770883_4771423_-|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl|CDD|235593
NZ_CP020819.1|WP_003815346.1|4769307_4770849_-|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
NZ_CP020819.1|WP_003815325.1|4755484_4756468_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223521
NZ_CP020819.1|WP_003815344.1|4768303_4769209_-|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl|CDD|235535
NZ_CP020819.1|WP_003815324.1|4754567_4755488_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NZ_CP020819.1|WP_003815341.1|4766428_4766851_-|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl|CDD|234796
NZ_CP020819.1|WP_003815327.1|4756464_4757475_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|226967
NZ_CP020819.1|WP_003815335.1|4761803_4763906_-|primosomal-protein-N'	unknown	unknown	gnl|CDD|235514
NZ_CP020819.1|WP_003815337.1|4764212_4765289_-|uroporphyrinogen-decarboxylase	unknown	unknown	gnl|CDD|234644
NZ_CP020819.1|WP_033452713.1|4758426_4759560_+|M20-family-metallopeptidase	unknown	unknown	gnl|CDD|349881
NZ_CP020819.1|WP_110115612.1|4759691_4761761_-|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|130146
NZ_CP020819.1|WP_003815343.1|4766860_4768261_-|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl|CDD|236447
NZ_CP020819.1|WP_003815329.1|4757477_4758383_+|hydrolase	unknown	unknown	gnl|CDD|226040
NZ_CP020819.1|WP_033450601.1|4765364_4766246_-|hypothetical-protein	unknown	unknown	gnl|CDD|185070

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP020819.1|WP_003815350.1|4771435_4771906_-|F0F1-ATP-synthase-subunit-B	gnl|CDD|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	2.79837e-52
NZ_CP020819.1|WP_033452711.1|4749282_4750143_+|NAD(P)H-hydrate-dehydratase	gnl|CDD|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	3.94937e-73
NZ_CP020819.1|WP_003815318.1|4750803_4752432_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP020819.1|WP_033450601.1|4765364_4766246_-|hypothetical-protein	gnl|CDD|185070	PRK15115, PRK15115, response regulator GlrR; Provisional.	3.28422e-05
NZ_CP020819.1|WP_110115611.1|4752480_4753524_+|succinylglutamate-desuccinylase	gnl|CDD|349481	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	2.20402e-78
NZ_CP020819.1|WP_003815321.1|4753582_4754560_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.49002e-115
NZ_CP020819.1|WP_003815348.1|4770883_4771423_-|F0F1-ATP-synthase-subunit-delta	gnl|CDD|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	1.16567e-65
NZ_CP020819.1|WP_003815346.1|4769307_4770849_-|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP020819.1|WP_003815325.1|4755484_4756468_+|ABC-transporter-ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.03649e-169
NZ_CP020819.1|WP_003815344.1|4768303_4769209_-|F0F1-ATP-synthase-subunit-gamma	gnl|CDD|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.30561e-149
NZ_CP020819.1|WP_003815324.1|4754567_4755488_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.17965e-94
NZ_CP020819.1|WP_003815341.1|4766428_4766851_-|F0F1-ATP-synthase-subunit-epsilon	gnl|CDD|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	1.40936e-54
NZ_CP020819.1|WP_003815327.1|4756464_4757475_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	5.08932e-129
NZ_CP020819.1|WP_003815335.1|4761803_4763906_-|primosomal-protein-N'	gnl|CDD|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP020819.1|WP_003815337.1|4764212_4765289_-|uroporphyrinogen-decarboxylase	gnl|CDD|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP020819.1|WP_033452713.1|4758426_4759560_+|M20-family-metallopeptidase	gnl|CDD|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	3.60898e-158
NZ_CP020819.1|WP_110115612.1|4759691_4761761_-|UvrD-helicase-domain-containing-protein	gnl|CDD|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP020819.1|WP_003815343.1|4766860_4768261_-|F0F1-ATP-synthase-subunit-beta	gnl|CDD|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP020819.1|WP_003815329.1|4757477_4758383_+|hydrolase	gnl|CDD|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	9.10797e-08

Protein sequences

>NZ_CP020819.1|WP_033452713.1|4758426_4759560_+|M20-family-metallopeptidase
MTTTLPDTDQLVAGIQSWIQCESPSNSPAGVTAMAHLAAEYARAVGLAVEIRPLNAEVGPLVYATNRAAGDTRPGVLVLGHLDTVHPIGTLQDNPCRIDGDRLYGPGSYDMKAGIYLALSALRGLPSPHATALPIDFLLVPDEETGSHASREHIEHYAARAKYALVCEPARPNGGKCVTARKGTGMLRLNVKGRPAHAGMQHEKGRSAIREMAHQVLELESMTDYERGITVSVGTIAGGTVTNTVPALCRCVVDFRVPDMGAAEDVLRRMRNLCAVGPDMELDIDVELNRPPMVKTEAATALLQLAQDFAAQAGFALEDAPMTGGGSDANFTSAMGVPTLDGLGADGDGAHTLNEYILVSTLATRMRFWELLLKALH
>NZ_CP020819.1|WP_003815329.1|4757477_4758383_+|hydrolase
MKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLAGSQSA
>NZ_CP020819.1|WP_003815327.1|4756464_4757475_+|ATP-binding-cassette-domain-containing-protein
MTTSDLPVIELRDVHKRFEHRPDMAQRLLALTGKPLDRRTVHAVNGVSLSVRRGEVLGLVGESGCGKSTLGRVVAGLHRESAGELLYQGRPAAQLRGADRLAYVLGVQMIFQDPQASLNPRQRLRQILAEALKVHKLAPPAEIPARVDRALAEVGLDREYRERYSHQISGGQRQRIGIARALMVEPRFLVCDEPVAALDVSIQAQVINLFMDLREQRGLTYLFISHDLGVVRHISDRVAIMYLGKIVEQASSAEIFAHPNHPYTQALMAEVPDVGRRGRVFTPIRGEIPSPLDPPPGCTFHPRCPHAMPRCREQAPVLREIAPGHVSACHLNDTAS
>NZ_CP020819.1|WP_003815325.1|4755484_4756468_+|ABC-transporter-ATP-binding-protein
MKDILLDVRGLRTAFHTEAGAWPAVDGVDLVVRRGEIVGLVGESGSGKSVTGFSLLGLIDPPGEVVEGEIRFKGKDLRKLGEEQMRQLRGNRIAMIFQDPLMTLNPVLRIGEQMAEAILTHENVPRAQAMERCREALEMVGIPSPEKRLRSFPHEFSGGMRQRVAIAIAMLNKPDLIICDEPTTALDVTIQGQILYRMQEICRQHDTALIWITHDLGVVAELADRVAVMYAGRIVESGPVDAVLDAPRHPYTRGLLESMPAQTQPGARLRQIDGMAPTLSARPWGCAFRPRCPNAVTRCTEQAPSVTQEGPRSYRCYVPIASETATA
>NZ_CP020819.1|WP_003815324.1|4754567_4755488_+|ABC-transporter-permease
MANPPSNGRTRTVHPLSETPRRAQILKKLHSRPTVRGSVIALLALVALILLAPYFAPQNPYDLASLNLLDGRLPPRSPTMDGGFYWLGTDDQGRDMFSAILYGLRISLLVGLTAVVLATAIGSLVGLLAAYAGGVIDAVLMRIVDFILGFPTILVALVLLAMMGRGVDKVILALVVVQWAHYARIMRGRALQERRKEYVEAAANLGFPAWRIMLFHLLPNCMAPVMVFATIQIANAIVLEATLSFLGVGVPVTEPSLGLLIANGFQYLLSGDYWISLFPGLALLLLILSINIVGDRLRESLDPRRA
>NZ_CP020819.1|WP_003815321.1|4753582_4754560_+|ABC-transporter-permease
MALFILRRLIQSLFVLLAVSVVVFFAVYAVGDPIELLVSPEASADARQAMIARLGLDLPVWQQYGNFLWRALHGDLGNSFVHGIPAISLILQRIPATFELVLVAIVLTCTIGIPLGLVAGLHRDRPLGRGIMATSVLGFSLPNFWQGMMLILLFSVWLGWLPASGRGDTANLFGVPLSILTLDGWSHVIMPAINLAVANVALVLRLTASGVVEAQSQEYVKFARAKGIKPGRIVRRHILRNILIPVVTVIGMEFGHLIAYSTITETVFAWPGMGKLLIDSVYQLDRPVVVAYVMLVTLIFVVINLVVDILYAALDPRVQLVAPAQ
>NZ_CP020819.1|WP_110115611.1|4752480_4753524_+|succinylglutamate-desuccinylase
MRRPYAFQRAVVVTPIQFEPLSGVAMSPPPAVAAVRPFELACPRLDAERVGNGATPGVWHFDAGLPGRHVLLTALIHGNELCGAWALKDALAAGLRPRRGKLTLAFCNLAAFDRFDPLNYAPARFVDEDMNRVWSADKLAAPDTQERRRARALLPWVEQADWLLDFHSMSNADEPLQLTGTQPRNIELALKLGNPAHLVADAGHAADVRLRDYGRFGAEGENGTRSLLIECGFHGAPASRTVARDILARFLLEAGTLAADDIPPGWLADAAPRQRALRVTHAVAARSADFRFAQPWQGLERIARAGTVIGWSDGEPVATPYDDCVLIMPSLANLRPGVTVVRLAQPI
>NZ_CP020819.1|WP_003815318.1|4750803_4752432_+|ABC-transporter-substrate-binding-protein
MKLRTTLALLATSAGLAAAPGSASAQSLKIALSSEPTSADPHYHKQTQNDAFSAHVYSSLIGRDADMKLVPALATSWKNLDDLTWEFKLRDDVKFSNGKPFTSEDVLFTICRTLNNETNVSQSYMDTTKRIADVQTPDAHTVIIKTAAPLPLLPAELARSLPIVWNGIVEHGKLTFNPKEGCGVTGPWPTVADFNNGKDAIGTGPYKLKSYVKGTGIELERNDNYWGPKPYWKDVKMVPVPNAGPRLTGLLSGDFDVIENPAARDLPRIKSNPQFGFVATPSTRLIFFQPDVGRNPSPLVKSADGKNPLQDLRVRQAISMAIDRKTIVTRLMDGIATPAYQYMPDGMFGGVPNAPEIKYDPEGAKKLLAEAGYANGFELTISTPNDRYVNDGQIAQAVAQYLSRVGIKANVDAMTASLYFPKRAKREFSFSMGGWPAEVGEASALFQLWVASLDSPRSLGTSNYGGFSNAEFDKVFTEALVTVDVAKREKLLQQSTQIALDNVPLIPLHFESSIWAFRKGLTYEGRRDQFTLAMSVQPADQK
>NZ_CP020819.1|WP_003815317.1|4750270_4750507_+|hypothetical-protein
MSDLTLSHNARLTDSLERELLRGAMEDQSNTIRPLAAVKAAAVGVGRGVRAVFAFIDEVNESMNRARAQSAHYTGSQW
>NZ_CP020819.1|WP_033452711.1|4749282_4750143_+|NAD(P)H-hydrate-dehydratase
MDTSSSSLPAIERQHLPALFAARPTDAHKGSCGTLGVIGGGPGMVGAALLAARAGLKVGAGKVLVGLVAETPPLPCDPMQPELMLRDFRGLLEAGLGIDAWTAGCGCGMDALAANALSELFQLRGDAALVLDADGLNLLAAGAVQPRWGNAPVVLTPHPAEAGRLLGLSTEAVQADRPAAARTLAARYGAWVVLKGAGSIVCDPAGACRINRTGNPGLATAGTGDVLAGILGALLAQRIAPEQAVPGAVWLHGAAADALVTHGIGPIGLTAGELADSARRLRNSRA
>NZ_CP020819.1|WP_110115612.1|4759691_4761761_-|UvrD-helicase-domain-containing-protein
MSASDTSIGSGLNPSQKEAVLYLDGPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAITPTEVEAVTVYRGYAATLAAYQAVDFDDLIRIPAELLERNEEVRTRWQNRVRYLLVDEYQDTNVCQYRVVQLLTGVRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPNLKLIKLEQNYRSVQRILAAANNVIERNPKLFEKKLWSDLGHGEPIIVSPMNGDEHEAESIAMKVSAARFERQAQWKDFAILYRSNHQSRVLEQALRNLKIPYTISGGQSFFDKAEVRDILAYLRLVANDEDDPAFIRAATTPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRAGRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAEEDGMTLFDLVQHVALVTMLERGEEEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPHLGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRSLNLSWCKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLDMLKALLKKD
>NZ_CP020819.1|WP_003815335.1|4761803_4763906_-|primosomal-protein-N'
MSDASSADPALPAADAAGVWVRVALDVPLPGPFDYRSAAPLPLGARVIVPFGRRKLVGVVVEHPAQPSIDPAQVREVEQPLEDLPPMPADWMRLARFAADYYQRPLGEVMLPVLPPPLRKPSAYQGKRSGLGPVARLDARKPRAEAAVAAEPDQAPELNEAQREAVDTIGALSAFQPVLLHGVTGSGKTEVYLHAAARVLQAGRQVLLMVPEINLTPQLEGALRARLEALVGPQGVAILHSGLADGERVQAWARAQRGQARLLLGTRMSIFAPLPELGLIVVDEEHDPSYKQQEGLRYSARDLAIWRARDLDIPVVLGSATPSLESWQHAERGRYLRLTLPGRARASSLPEIRLIDTRRLQLKQGLAPQFIEAIGQRLERGEQSLVFLNRRGYAPVLHCASCAWVSHCPRCSTFTVLHRGPGAGGYRLQCHHCGYQAPVPRACPECGDQDLEPMGRGTQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFARLGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVLIQTGYPEQPVYQALLRHDYAGFARHALQEREDTGLPPFAYQALLTAEARELTVAQGFLQRARDLATGEPWPGVDAITLYDPVPLRVVRVAHVERAQLLIESTSRPALQGFLTAWAACLPQLAAEARVRWQLEVDPLEI
>NZ_CP020819.1|WP_003815337.1|4764212_4765289_-|uroporphyrinogen-decarboxylase
MSVAPLKNDVFLRALLREPVPYTPIWLMRQAGRYLPEYNATRARAGSFMGLAQNPDYACEVTLQPLARYPLDAAILFSDILTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMDSLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMVEGRGSDDYRLIKSMLYGRPDLLHRILEINAEATRHYLNAQIDAGAQAVMLFDSWGGVLADGLFQQFSLAYTRRVVEGLTREREGRRVPVIVFTKGGGQWLEEIAACGCDAVGLDWTVNLGTARRRVADAVALQGNLDPMTLFGGAQAVRAEARRTLDAFGPVGKGGHVFNLGHGISQYSPPEVVSELVDEVHTYSRALHAG
>NZ_CP020819.1|WP_033450601.1|4765364_4766246_-|hypothetical-protein
MRALLECAVLVMPDQPSWVGAWLAAVRSPEARLADRLRLHEYPLSGGRDGLALGQAAMSLRRFDALLLPVQASTLGWARLVLAQASPALSTPVLVLVRDLTAPAIADLLRLGARDFLRVPACLEELRVRASRAWRAIPPPAAGARAAVPVPGAEPGGGRGPGAPTDPGEGDGYRLPGMPETADASAAAPCMLAQTRAPYAATLGDARMAVQRELPFRQAKAQVVGRFERAYLRGALARHGGNVAQAARAACKHRRAFWALMRKHGIDARPYREGVAGAWPYETAPPRDPADEA
>NZ_CP020819.1|WP_003815341.1|4766428_4766851_-|F0F1-ATP-synthase-subunit-epsilon
MATLHVDVVSAEEAIFTGEAKFVVLPGEAGELGILPGHTPLISRIRPGTVKIVRADEGEENIFVAGGILEVQPGSVTVLADTAIRAADLDEARAVAAREKAEEALRNAKDKADIAVVEAELAMLAAQAVAARKLRQGRTH
>NZ_CP020819.1|WP_003815343.1|4766860_4768261_-|F0F1-ATP-synthase-subunit-beta
MSNGTIVQCIGAVVDIQFPRDNMPKIYEALTLVDEGSSFAEKGLTLEVQQQLGDGVVRTIALGSSDGLRRGMQVAGTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIASDEKRAIHQPAPRFDELSPSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMEESNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAEKFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFQHLDSTVVLSRDIAALGIYPAVDPLDSSSRQLDPQVVGEEHYQVARGVQQTLQRYKELRDIIAILGMDELSPEDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLAETIRGFKMIVDGECDALPEQAFYMVGTIDEAFEKAKKLQ
>NZ_CP020819.1|WP_003815344.1|4768303_4769209_-|F0F1-ATP-synthase-subunit-gamma
MPGIKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRAGRPYATKVREIAAHLMQANPEYSHPYLVEREVKAVGVVLVTTDKGLCGGLNTNISRVTLSKLKEFEQRSIKVQATAFGNKGLGLLTRIGAKLVSQEVQLGDKPDLDRLLGAIKVQLDDYLEGRIDALYVATTRFVNTMRQEPVFLRLLPLSNGLDDPFQSGVETLAKTAEIKSDYSWDYIYEPDAKSVIDDLLQRYVEGLLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNKTRQAAITKEISEIVGGAAAV
>NZ_CP020819.1|WP_003815346.1|4769307_4770849_-|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELLKSRIEGLGASTDVRTQGTVVSVTDGITRIHGLSDVMQGEMLEFPNNVFGVALNLERDSVGAVVLGDYTGVSEGDQVKTTGRILEVPVGPELKGRVVNTLGDAIDGKGPINTTQTDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIGRGQRELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIGQKASTINNVVRKLEEHGAMEYTIVVAAAASDSAAMQYLAAYAGCTMGEYFRDRGEDALIVYDDLTKQAWAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEEYVEKFTNGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGVRPAINAGISVSRVGGAAQTKVIKKLSGGIRTDLAQYRELAAFAQFASDLDDATRRQLERGKRVVELLKQPQYQPLQVWELAVSLYAVNNGYLDDVDVAQILAFEKSLKDHLKAKHAALIQRIEDTKELSKDDEAELAAAVQDFKKHGAF
>NZ_CP020819.1|WP_003815348.1|4770883_4771423_-|F0F1-ATP-synthase-subunit-delta
MAELSTVARPYAEALFGAARDDKAGLAVWADLVSEMAQVAANPDVREAMADPRLDDKQRSEVFTGLIKSQLPQAARNFIELLVKNDRLLLLPVIATQFVALKNRHEGTAQAEITSAFELSDAQVKELIAALELKFGLKLKPHVSVDQELIGGVRVAVGDQVLDTSVKAQLARLRDTLAA
>NZ_CP020819.1|WP_003815350.1|4771435_4771906_-|F0F1-ATP-synthase-subunit-B
MNLNATIFFQMLVFFVLGWFTMKFVWPPLTKAIDERRQKIADGLAAAEKGKADLAQAQARVSLIEASAKSETHARIIEAEKQAASVIEQARREAEAERARIVAQAAQDAAQEVQRAREALRDDVAALAVKGAEQILKREVDARAHAELLNQLKAQL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	1487010-1487059	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095578-3095627	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095661-3095710	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095744-3095793	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095827-3095876	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095910-3095959	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3095993-3096042	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3096076-3096125	0	1.0
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	1442392-1442441	1	0.98
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	1442475-1442524	1	0.98
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3274272-3274321	1	0.98
NZ_CP020819_9	9.1|4533507|33|NZ_CP020819|CRISPRCasFinder	4533507-4533539	33	NZ_CP020819.1	3963640-3963672	1	0.97
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3274189-3274238	2	0.96
NZ_CP020819_6	6.1|3253284|50|NZ_CP020819|CRISPRCasFinder	3253284-3253333	50	NZ_CP020819.1	3274355-3274404	2	0.96

1. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 1487010-1487059, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

2. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095578-3095627, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

3. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095661-3095710, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

4. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095744-3095793, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

5. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095827-3095876, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

6. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095910-3095959, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

7. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3095993-3096042, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

8. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3096076-3096125, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

9. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 1442392-1442441, mismatch: 1, identity: 0.98

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccgagggggct	Protospacer
*****************************************.********

10. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 1442475-1442524, mismatch: 1, identity: 0.98

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccgagggggct	Protospacer
*****************************************.********

11. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3274272-3274321, mismatch: 1, identity: 0.98

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccgagggggct	Protospacer
*****************************************.********

12. spacer 9.1|4533507|33|NZ_CP020819|CRISPRCasFinder matches to position: 3963640-3963672, mismatch: 1, identity: 0.97

gcctgcaagatttcatggcatctgcccgtgcgt	CRISPR spacer
gcctgcaagatttcatggcgtctgcccgtgcgt	Protospacer
*******************.*************

13. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3274189-3274238, mismatch: 2, identity: 0.96

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgcgcgggcttgctgccccccgagggggct	Protospacer
**********************.******************.********

14. spacer 6.1|3253284|50|NZ_CP020819|CRISPRCasFinder matches to position: 3274355-3274404, mismatch: 2, identity: 0.96

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgcgcgggcttgctgccccccgagggggct	Protospacer
**********************.******************.********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2306574 : 2314640	9	Moraxella_phage(28.57%)	tRNA	NA
DBSCAN-SWA_2	3624262 : 3646631	30	Pseudomonas_phage(18.18%)	terminase,tail	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP020819|2306574:2314640|DBSCAN-SWA
TATGATGCACACGCTTGCCGCCGCCTGCCGCCACCAGGAAGAAATCAAGAAAAGCCGCTTTGCCGCCTATGCCGCGCCCGTGGGCACGATCGCCGAGGCCATGGCGCATTTCGCTGCGCACAGCGACCCGGCGGCCACGCATAATTGCTGGGCCTACCGCATCGGCAACGAATACCGCTTCAATGACGACGGCGAGCCGGGCGGCACGGCCGGGCGGCCCATCCTGCAGGCCATAGACGGGCAGGGGCTGGACCGCGTGGCGGTGCTGGTGGCGCGCTGGTTCGGCGGCATCAAGCTGGGCGCAGGCGGCCTGGTGCGCGCCTATGGCGGCTGCGCCGCCAACTGCCTGCGCGCCGGCGAGCGCTTGCCGGTCATCGCGCTGGCGACGGTGCGCTGCCGCTGCGGCTTCGCCGAGCTGCCGCTGCTGCAGGCGCGGCTGGCGCAGGCGGGCGCCAGCGTGCGCAGCGAAACCTTCGACGCCGACGGCGCGCAACTGGAGCTGGACGTGCCCTGCGCCGCGCTCGAAGAGCTGGCGCGCACGTTCGCCAACATCACCCGCGGGCGCGGCGGCTGGGACGTGCAGGCCTGAGCCAGGCCCGCCGTGGCCTCAGGCCTGTTCGCCTTCGCCGTTTTCGCGCGCCTGCGCGATATCGCGGTGCACCTCGGCCATGTCGACTTCCTTGACCTTGGTCAGCAGCTCGCCGAGCTGGCCGGCCGACAGGGCGCCGGGTTGCGAGAACAGCAGGACCTTCTCGCGAAACACCATCAAGGTCGGGATCGAGCGGATGCCCAGCGCGCCGGCCAGCTCCTGTTCGACGTCGGTATTGACCTTGGCGAAGGTCACGTCGGGGTGTTGCTCGGCCGCCTGCTCGAACACGGGGGCGAAGCCGCGGCACGGGCCACACCAGGGGGCCCAGAAGTCGATGATCAGGGTGCCGTCGGGCGTGATGGCGTCCTGGAAGGTGTCCTTGGTCAGTTCAACGATGCTCATGCGTGTCGTCCTTGCCGCCCGCGTAGGGTGGCGTCTGGGGCCCGTGGGCCCGGTTGGCGCGGCCGGGGCCGCGCAGTGGATGTTCCGTCCGTGGTCGGTGGGCGAAACGCGTGGCGCGATCGCGCGCCGTGCCGGTCAGGCGTTCGCGGTGCGGGTTGATACGCCTGCGTCCTGCTTGAGCGAGGCGACGATCTCGTACGAACGCAGCCGATCGGAAAAGTCGTAAAAATCGGAAACGATCATCACCTCGTCGGCCTGGGTCTGCGCGACCAGGCTCTCCAGTTCGCGCTTGACCGTATCGGGGCCGCCAACGATGGCCGCGCCCAGTCTCTGTTGGACCGCGGAGCGCTCCCACTCGTTCCATATGCCGTCCATGCTTTCCACGGGCGGCTGCAGCGGCAGGCGGTTGCCGCGGATCAGCGACAGGAATTTCAGTTGCTGGGTGGTGGACAGGAAATGCGCCTGCTCGTCGGTGTCGGCCGCCACCACCGGCACGCCTATCATGGCATGGGGGCGCGCCAGCGTCTGCGACGGCTTGAACAGTTGCCGATACAGGCGCATGGCGGCCATGCCTTCGGGCGAGAAGTGGCCCGCGAACGAGAAGGGCAGGCCCAGCTCGGCGGCCAGCCGCGCGCTGAAATCGCTCGAGCCCAGCAGCCAGATGGGCACGTCGGTGCCGGCGCCGGGAATCGCGCGCACCGGCTGGCCCGGCCGCGCCGGCGCGAGGTACGCGCGCAGCTCGTGCAGCAGTTCGGGAAAGTCCAGGCCGCTGCGCGGCCCGCGCCGCAGCGCCTGCTGGGTGGCCCCGTCGCTGCCGGGCGCGCGGCCCAGGCCCAGGTCGATGCGGCCGGGAAACAGGCTCTCCAGGGTGCCGAACTGCTCGGCGATGATGAGCGGCGCGTGGTTGGGCAGCATCACGCCGCCCGAGCCCACCCGCAGCGTGCTGGTATGCGCGGCGACGTGGCCGATCAGTACCGCCGTGGCGCTGCTGGCCACGCCGGTGATGTTGTGGTGTTCGGCCAGCCAGAAGCGGCGATAGCCCCAGCCTTCGACGTGGCGCGCCAGGTCGACGGTGTTGCGAAACGCCTGCGCGGCCGTGCCGCCCTGCACGATGGGGGCAAGGTCGAGGACCGAGAACGGCACGCTGGCCAATACACTCATGCGGGTGCTCCGGTTGTGTCGCGGCGCGGCGCGCCCGACGGGTCAGGAATATATGGAGAGTGTATCGGCGATTTCAACCGCGCACCCGAACAACCTTGGGCGCCATCGGGTCGATAGTCTCGCTGTATCGCGGCGATTGAAGGCCTCGAAAGCAGGCAGGCCGCGCGAGGCGGCCTGCTTGCGGGGCGAGGCGCGCGGCCCGGCCTTATTCGGGGAAGAAGGCGTAGCGGACGATGAACAGGATCGCCACCAGCCAGGTGGCCGGGTGCACCTCGCGGATGCGGCCGGTGCAGGTCTTGAGCACCACGTAGCTGATGAAGCCGAAGGCCAGGCCGTTGGCGATGGAGTACGTGAACGGCATGACCAGGGCGGTCAGCGCGGCCGGCGTGGCCTCGGACACGTCGTTCCAGTCGATGTCGATCAGCTCGCGCATCATCAGCCCGGCGACATACAGCAGCGCGGGCGCGGTGGCGTAGGCGGGCACCGAGCCGGCCAGCGGCGCGATGAACAGCGCGGCCAGGAACAGCAGCGCCACGACCAGCGCCGTCAGGCCGGTGCGTCCGCCCGCCTGTACGCCCGAGGCGCTTTCCACATAGGCGGTGGTGCTGCTGGTGCCCAGCATCGAGCCGGCCACGATGGCGGTGCTGTCGGCAAACAGCGCGCGTCCCAGGCGGTTGGGGCGGTCTTCCGGCACCAGGCCGGCGCGCTTGGCGATGCCCATCAGCGTGCCGGTGGCGTCGAACACCTCGACCAGCACGAACACCAGGATCACGTGCACGAAGCCGGTGTGCAGGGCGCCCAGGATGTCCAGTTGCATGAACGTCGGGGCCAGGCTGGGCGGCGAGGAGAAGATGCCGTTGAACTGGTTGTAGCCCAGCAGCATGGACAGCACGGTCACCGACAGGATGCCGATCAGGATCGCGCCGCGCACGCGCAGCGCATCCAGCGCCGCGATGATGAAAAAGCCCAGGATGGCGAACAGCGGGCCGGGCTCGCGCAGGTCGCCCAGCGTCACCTTGGTGGCGGGGTGCGCGACGACGATGTTGGCGTTGGACAGCGCGATGATGGCCAGGAACAGCCCGATCCCGGCGGCGATGGCGCTGCGCAGCGAGTGCGGGATGCCGCGGATGAGCCAGGCGCGGATGCCCGAGATGGTCAGGAACAGGAAGATGACGCCCGAGATGAACACGGCGCCCAGCGCCTGCTCCCAGGTGTAGCCCATGGTCTTGACCACGGTGAACGCGAAGAACGCGTTCAGGCCCATGCCCGGCGCCATGCCGATCGGCCAGTTGGCCACCAGCGCCATGATCAGCGAACCCAGGGCGGCGGCCAGGCAGGTCGCCACGAACACGGCATTGCGATCCATGCCGGTGCTCGACAGGATGTCGGGGTTCAGGAAGATGATGTACGACATGGTGAGGAATGTCGTCAGCCCAGCCACGATCTCCGTGCGTACGGTCGTGGCGTGGTCACGCAGTTGGAATAGCTTCTCCAGCATGGAAGTCCCCGGGGGTTTGAGAGCGGTTGTTGTGTGCTTGCGCCGGCGCCGCCTGCCGCGCAGGCGATAATGTAAGCGCAAAACCCGTATTTTTGCACCAGGGCCCGCGGACCCTGGTTGTAAACTCTGCGCCCATGATCATTCTCGGCTTTGAAAGCTCGTGCGACGAAACCGGCGTGGCCGCCGTCTGCACCGAGCGCGGCCTGCTTGCGCACGCCCTGCATACCCAGATCGCCATGCACCAGGAATATGGTGGCGTGGTGCCCGAACTCGCCTCGCGCGACCATATCCGGCGCGTGGTGCCCCTGACCCGCCAGGTGCTGGCCGAGGCCGGCCTGACGCTGGCCGACGTGGGCGCGGTGGCCTACACCGCCGGGCCGGGCCTGGCCGGCGCCTTGCTGGTGGGCGCCAGCGTGGCCCAGGCGCTGGCCTGGTCGCGCGCGCTGCCGGCCATCGGCATCCATCACCTGGAAGGACATCTGCTGTCGCCGCTGCTGGCCGAGCCGCGTCCCGAGTTTCCGTTCGTGGCCTTGCTGGTCTCGGGCGGGCATACCCAGCTGATGCGGGTCGACGGCGTGGGCCGCTACGAACTGCTGGGCGAGACGCTGGACGACGCCGCCGGCGAGGCCTTCGACAAATCGGCCAAACTGATGGGCCTGGGCTATCCGGGCGGCCCCGCGCTGGCGCGCCTGGCCGAGCAGGGCGACGCCAGCCGCTACGACCTGCCGCGCCCCATGCTGCACAGCGGCGACCTGGATTTCAGCTTCAGCGGATTGAAGACCGCGGTCCTGACCCGTGTGAAAGCGGCCACGCGCGATGGCGGCGAACTGGGCGAACAGGACCGCGCCGACCTGGCGGCGGCAACGCAGGCCGCCATCGTCGAGGTGCTGGCGGCCAAGGCGATCCGCGCCTTGAAGCAGACGGGCCTGCGCCGCCTGGTGGTGGCCGGCGGGGTGGGCGCCAACGCGCTGCTGCGCGCGCATCTGGCGCGCGCGCTCAAGCCCTTGCGGGCCGAAGCCTATTTTCCGCCGCTGTCGCTGTGCACCGACAATGGCGCCATGATCGCGTTCGCGGCGGCCGAGCGGGTCAAGGCCGGACTGGCCGACCTGCGCGAGGGCGACCACGCCTTCACGGTGCGGCCGCGCTGGGACCTGGCGGATATCCAGGCCGGGTAGGCTGACGGGGGGCCTGTCCCCGCGGGGGCAGGCTCCTGAGTGGGTTACTTCTTCTTCCCGATGCGGCTTTCGGTGCCCTTGAGCAGCCGCGCGATGTTGGCGCGGTGGCGGTAGAACAGCAGGGCGCTGATGACGGCGATGGCCAGGCCGACTTCCAGCCGCGCATGCCAGGCTGCGCCCGAGCCGAATACGTAGTAGACGGGCGCGAAAAATGCGGCGACCAGGGCCGCCAGGGACGAATAGCGCGAGAACACGGCCACGATCAGCCAGGTTGCGATGGTGGCCACGGCCAGCCATGGCTCGATGGCCATCAGTACGCCCAGCGCCGTGGCGACGCCCTTGCCGCCCTTGAAGCGCAGGAACAGGGGGTAGAGGTGGCCGAGGAACACCGCCAGCGCCACCAGCGCGTAGGCGCCCCAGGAGAGTTCGGGGACCAGCGCGCGGGCCAGCCACAGCGCGAACCAGCCCTTGGCCGCGTCGCCCAGCAGGGTCAGCGCGGCGGCGGTCTTGTTGCCGGTGCGCAGCACATTGGTGGCGCCCGGATTGCCGGAGCCGTAACTGCGCGGATCCTGCAGCCCCATCAGCTTGCTGACCACGACGGCAAAGGGGATGGAGCCGATCAGATAGGCCAGGACAATCAGTGCCGAACTGGACAGGAGCGAAGGGGCGGTCAGGACCATGGTGGCAGGCATTCCGTTACGGTTGCGTCGTTTGGCTGCGGATTCTACCTCGGGCGGCGATTCTGACGCGATGATGCCGCTTCATGACGGTACAATCGGTCGCGGTTTGTGGCGATCCCCACGATTCAGGAAGATTGATGCGTATTCTGGTTTCAAACGACGATGGTTACAACGCCCCCGGGCTGGAAGCGCTGGTCGAGGCGCTGTCCGGGCTGGGCGAACTGACCGTGGTCGCGCCGGAGACGAATCACAGCGGCGCCTCGAATTCCCTGACCCTGAACCGGCCGCTGACGGTGCGCACCGCTTCCAACGGCTTCATCTACGTCAACGGCACGCCGTCCGATTGCGTGCACGTCGCCCTGACCGGCCTGATGGATGCGCGCCCCGACCTGGTGGTGTCCGGCATCAACAATGGCGCCAACATGGGCGACGACACGCTTTATTCCGGCACGGTGGCCGCGGCCAGCGAGGGCTACCTGTTCGGCATTCCCTCGATCGCCTTCTCGCTGATCGAAAAAGGCTGGCAGCACATCGAATCGGCCGCGCGCGCCGCCCGCCAGGTGGTCGAGCGCCAGATCGCGCAGCCGCTGGCCGCGCCGGTCCTGCTCAACGTCAATATCCCCAATCGCCGCTACGAAGACATGAAAGGCTACGCCGTCACGCGGTTGGGCAAGCGCCATCCGTCCGAGCCGGTGGTGCGTACCACCACGCCTTATGGCGACACGGTGTACTGGATCGGCCCGGTCGGCCTGGCCGCCGACGCCACGCCGGGGACGGACTTCCACGCCACGGCGCAGGGGCAGGTCTCGGTGACGCCGCTGCGCCTGGACCTGACCCAGCACAGCCAGCTTGACGATGTGCGCAACTGGGCGGAGCCGCTATGCGTAAACGCGTAGACCCGCCGGCCGGCGGCCGCCTCGCGCCCGGCATCACGCCGGCCAACAGCAACACCCGCATTTCGGCCGGCGCCTTGCCGCGCGCGCCTGCGCAGCCCGCGCCGCTGGCCAGCGGCAACCTGGGCCTGAACTCCGACCGGCTGCGCCAGGCGATGGTGCAGCGGCTGCGCACGCAGGGCATCGTCGACGAACGGGTGCTCAACGCCATGGCGGCGGTGCCGCGCCATCTGTTCGTCGATGAAGCGCTGGCCAGCCGTGCCTACGAAGACGCGGCGCTGCCCATCGGGCACTCGCAGACCATTTCGCAGCCGTGGGTGGTGGCCCGCATGATCGCCGCCGTCTGCGAGGACCGTGCCCCGGCCCGGGTGCTCGAGGTTGGCGCCGGCTGCGGCTACCAGGCGGCGGTACTGGCCCAGATCGTGCGCGAGGTGCATGCCATCGAGCGCATCCGCGGCCTGTACGAGCTGGCGCGCGGCCATCTGCGGGCGCTGCGCCTGGCCACCCGGGTGCGCCTGATCCATGGCGACGGCATGCTGGGCGTGCCCGGCGTGGCGCCGTTCGATGCTATTGTTGTGGCTGCGGCGGGCCTGGCCATTCCGCAGGCCTTGCTGGATCAGCTTGCGCCGGGCGGGCGGCTGATCGCGCCCGAAGGGTCCACCCACCAGCGGCTGGTGCTGATCGAACGCACCGGGGCCACCGCCTGGAGCCGAAAAGAACTCGAAGCTGTACGTTTTGTGCCCCTCAGGGCCGGAATACAATCTTGAGCAAACAGGAGAATCGTATGCTCAACGGGCAGTTGCAACTGACCGAATCCCAATCCGTGGCTGGCGCATCCGCCGCCGCCGCTTCCCGACCCGTTCTCTGGGCGGGCGTGCTGGCCATCGCCTTGCTGGCCGGCTGCGCCTCGAAGGGCCCGCGCGCGCCCGTGGTCGACCTCACCGGACAGCCCGGCGCCTCCGGCCCGACCGACGGCAGCTATGTCGTCAAGCCTGGCGATACGCTCTACAAGATCGCGCGCGCCAACAATGTCGATATCGAAAACCTCAAGCGCTGGAACAACCTCACCGATCCCAACCAGATCAGTGTCGGCCAGGTGCTGCGCCTGTCGAGCTCGGGCGCCGGCGGCGCGCAGACCACGCCGGTGACCTCCTCCAAGCCGCAACCCAAGCCGCTGGACCAGGGAAGCGCCGAAACGCCGGCCGGCGGCATGGAAGCCGGCGCCGGCGGCGAAACCGGCGGGGCCACCACCCCGCCCGCGGCAACGGTGCCCGATCCCAAGCCCGCGCGCGCGGCCGATGCCGCCGTCATCAACTGGGGCTGGCCGGCCAATGGCGCCATCCTGCAGACCTTCAACAGCAACACCAAGGGCATCGACCTGGCCGGCTCGCTGGGCGATCCGGTGATCGCGGCGGCCGATGGCAAGGTGATGTACAGCGGCAATGGCGTGCGCGGCCTGGGCAACCTGATCATCATCAATCACCAGAACGGCTTCATCACGGCCTATGCGCACAACCGCGCGCTGCTGGTCAAGACCGGCCAGAACGTCAAGCGCGGGGCCAAGATCGCCGAGATCGGCGAGACCGACACCACGTCGCCGCGCCTGCATTTCGAGATCCGCCGCCAGGGCACGCCGGTCGACCCGATGCAGTATCTGCCGCCGCGATGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP020819|2306574:2314640|2308930_2310223_-|WP_003811011.1|DBSCAN-SWA
MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGMDRNAVFVATCLAAALGSLIMALVANWPIGMAPGMGLNAFFAFTVVKTMGYTWEQALGAVFISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPATKVTLGDLREPGPLFAILGFFIIAALDALRVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPSLAPTFMQLDILGALHTGFVHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRALFADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTALVVALLFLAALFIAPLAGSVPAYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVVLKTCTGRIREVHPATWLVAILFIVRYAFFPE
>NZ_CP020819|2306574:2314640|2313755_2314640_+|WP_003811022.1|DBSCAN-SWA
MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGPRAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARANNVDIENLKRWNNLTDPNQISVGQVLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGAGGETGGATTPPAATVPDPKPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGVRGLGNLIIINHQNGFITAYAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQGTPVDPMQYLPPR
>NZ_CP020819|2306574:2314640|2311442_2312090_-|WP_003811015.1|DBSCAN-SWA
MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRSYGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFALWLARALVPELSWGAYALVALAVFLGHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAAFFAPVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK
>NZ_CP020819|2306574:2314640|2307699_2308725_-|WP_003811009.1|DBSCAN-SWA
MSVLASVPFSVLDLAPIVQGGTAAQAFRNTVDLARHVEGWGYRRFWLAEHHNITGVASSATAVLIGHVAAHTSTLRVGSGGVMLPNHAPLIIAEQFGTLESLFPGRIDLGLGRAPGSDGATQQALRRGPRSGLDFPELLHELRAYLAPARPGQPVRAIPGAGTDVPIWLLGSSDFSARLAAELGLPFSFAGHFSPEGMAAMRLYRQLFKPSQTLARPHAMIGVPVVAADTDEQAHFLSTTQQLKFLSLIRGNRLPLQPPVESMDGIWNEWERSAVQQRLGAAIVGGPDTVKRELESLVAQTQADEVMIVSDFYDFSDRLRSYEIVASLKQDAGVSTRTANA
>NZ_CP020819|2306574:2314640|2310357_2311398_+|WP_003811013.1|tRNA|DBSCAN-SWA
MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPELASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTAGPGLAGALLVGASVAQALAWSRALPAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLMGLGYPGGPALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRVKAATRDGGELGEQDRADLAAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLRAHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKAGLADLREGDHAFTVRPRWDLADIQAG
>NZ_CP020819|2306574:2314640|2312215_2312974_+|WP_003811017.1|DBSCAN-SWA
MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSLTLNRPLTVRTASNGFIYVNGTPSDCVHVALTGLMDARPDLVVSGINNGANMGDDTLYSGTVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVNIPNRRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWIGPVGLAADATPGTDFHATAQGQVSVTPLRLDLTQHSQLDDVRNWAEPLCVNA
>NZ_CP020819|2306574:2314640|2306574_2307162_+|WP_033449764.1|DBSCAN-SWA
MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAATHNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDGQGLDRVAVLVARWFGGIKLGAGGLVRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDADGAQLELDVPCAALEELARTFANITRGRGGWDVQA
>NZ_CP020819|2306574:2314640|2307180_2307564_-|WP_003811007.1|DBSCAN-SWA
MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAEQHPDVTFAKVNTDVEQELAGALGIRSIPTLMVFREKVLLFSQPGALSAGQLGELLTKVKEVDMAEVHRDIAQARENGEGEQA
>NZ_CP020819|2306574:2314640|2313048_2313738_+|WP_003811020.1|DBSCAN-SWA
MPRAPAQPAPLASGNLGLNSDRLRQAMVQRLRTQGIVDERVLNAMAAVPRHLFVDEALASRAYEDAALPIGHSQTISQPWVVARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQIVREVHAIERIRGLYELARGHLRALRLATRVRLIHGDGMLGVPGVAPFDAIVVAAAGLAIPQALLDQLAPGGRLIAPEGSTHQRLVLIERTGATAWSRKELEAVRFVPLRAGIQS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033449764.1|2306574_2307162_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.8e-16	46.8
WP_003811007.1|2307180_2307564_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	8.1e-09	25.8
WP_003811009.1|2307699_2308725_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003811011.1|2308930_2310223_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
WP_003811013.1|2310357_2311398_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.3e-92	51.6
WP_003811015.1|2311442_2312090_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003811017.1|2312215_2312974_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
WP_003811020.1|2313048_2313738_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-32	46.9
WP_003811022.1|2313755_2314640_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP020819|3624262:3646631|DBSCAN-SWA
ATCACCGCTGGATCGCCAGCACTGCTACGCGGCCGCCTATGTAGTACGTACCATCGACCGGATGTCTGGCTTTGATCGACCAAGAGATCGTTTTCCCTCCCGGCAAGGCATCGCTGATCCAGGTAATCATGGCAGCCCCATCGGGAGGATTCGACAAAGCATTCGGGATGATCTCTCCGTCAATGGAAACAATGGTGTTACGCCCAAATGGAAACCGCCCTCCCGATTGCGCGTACTGCATAAAGACTACTACCGAACCGCCATAGGGCAGGTACAAACTACCGGTCGCAACAGTCGCCAACTCCGATCCCCCTCGCCCCAAGGACTTGGAGATGATGCTGTGAGAGCCTGTCACAACAGCACCAGATGCGAGGCGCAACGTATCGACCTGCGCGACACCTATATGGGCAGTCTTGACGTAGGCCGTGGTGAAGCTGGCCAGCTTCGCTATCAGAGACTCGGCGTTGATCCGATCGGCGCTCATAACGCCTACCACGATCTTTCCCGCGTCTAGGCTCTCGATCTGCGCACTCTTGATCCAGGCCGTCCCGATGAATGCCTTATTTAGGAAGGTTTGCCCATTCTGGACCACGAATGGCGTGGAAATCTTTCCGTTCGCTAGATTGAGGAAGGCGAAGCGATCCGCAAGAAAGTAGACCGATGTTTGCACCCGGCCGCGCTCATTCGTGTAGGCGCCGAGCGCCATGCCAGCCGCGTATACCTTGCCGTCTTGGGCGACCTGCGTCTGGACAGACCAGGTCGCCCGCAGACGTCCATCTAGGCTGGAAAGTGCCGTGCTAGTCTGCTTTACAGCCGTTGCACTCGCACCATTTGCTGCAATCGCATCTTCGACCCGACGAGCCAATGCGCCATCCTGGTTAAGGCGCTCCTCTCTTTCCTGATCCAGCTTCGCAGTGACCGTATTGATGTTGCGCCCCATCCCCGAAATGGTCTGCGTCAAATCACGTGTCAGCTGCTCCGGCCCGATCTGGCCACTCAAGTAGTCAAGAATCTTGCCCGCATCGCTACTTGCACTACCCGGCACGCCCTGCCCGTCGGGATACCATGGACCCACCTGTCCCGCCTCGTCGCGTATTCGCCCCCAGAACCAAATTCTCGTACCATGGCTCAGGCCGAATCGGGTAAAGCGGCTTTGAGGCAACCGAAACTCTCCCATCAACGAAGCATCCCCGAGGTTGGAAGTCGAAGACTCCCAAATCTCGACTGAGCTTATCCATGGGGCGTCCGGCACAGTCCACGCCAATTCAATCGCCATCACTTGGCTTACCGCCGTCAACGCGGAGAGCCTAGGCGGTGGTGCAGCGCTTGCGCTAACGTTGCCCTGCCAAGTCTTCCACGGCCCGGACAATGCGCCGACACCTCGAACCCGCACCTGCCAGGATCCCGCGCGAAGGTGGACCTCAAGACTCGGTAACTCGGCCATCCCCAGAGGCTGCCAATGTACGCCTCCATCGTCACTGGCTTCAAACTCGTAGCGATAGGCACCGGAGGCCGGCGTGGCTGATACGATCTGTTGTCCTGGTCGAGGAGCGGAAAACACCGTCACGCCATCAACAATCGGCCCCAGCGGTACGATGGGTAGCAAAGAAGGAGACGCGAACTCCGGTTCCTGCCCACCCAGTTCCGCTGTATGCACCGATGGTGCATAGTTCACCAAGTCCAGCGTCCATAATCCACCCTCGCTCGGCACCGCCCGCATTACCTGTGCAAGCAATGCCCGCCGCTCGCCTGGACCAAACGTGTAGTGGGTAGGCTCTTCAGTTTCCCCTGTAGAAATATACAAACCGTGCCCATCAACCAAATCCGCAATGCGCATCTCACGCTCGTGCGAGCCCGGCTCGACGCGAAAAGGTCCGGCGGGTCCGCCATCTCGGCCGCGCAAACTGATATAGTGGTTCTGGCCTTGCCACCACTGCAAAGGCTCGGACGTAGTAAGCAGAAGCGCACGAGGATCGTAGTCTTCCACGATTCCCGACAGCCCCCACTTGGGAACATCATGGCTGATCTCGACTAGATCGGCATAGCCCGGAATGGCTCCTTCCAGTTCCGTCTGAAAACTTGCAAAACGACGCTGGTCCCGGTTGCGGGCCAATAGTGCCATGCCCTCACGCCATGCCTGCGCACGCCCCGTCACACCCACTAGACGCAACCGATAAGGCCGCCGTTTGGCCGCACCGGGCCAAGCACACTCCACCTCGTCGTCCTTCCACGTCCTCTCGTTGACGAACTCGACAATGATGTAGTCTGGGTCGTCATGCGCTGGAAACACATAGTCAACGGAGAACGAACGCGTCACGATGTTGGCGGGCGTAAACATCTGCGTTCGCACGGACTTGGGCTCATCTCTGATGACATCTATCACGCCAGCGTGATAGATCGGTAGCGCCCGCCCAGCACGGGCGATCTGCGTCACTGCTTCCCAAAATGTCGTACTGACGTCAAAAACGCCGTCGAACCAATCGCCCCGCTCATCCCAGACTTTTGCCAAGCGATAGAGTGCCGCCAGATTGATGCGGCTGTCCGGCAGTCCTCGTCCATACTCCCGGTCCGTGCACGCATCGGCGATCGCCCAGGCAGGATTACGAGTAGGTTTGAGGTCCTGGGACCACCCTTGGACCGGATCCCAGGTTCGCAACCGCCGGGTGGCGATAATATTGATCCGCCGCGCGGTGGTTTGGTTCAGATTACCCGTCGCGCGCATAGCTACCGCCAGCATCGTGACGTTTCCATAAGTCCGCTGAGATGGCAGGTAGGACCGCAACCCTAACCATGTCACGTCGCGGATCATACGGGTAGCGCGCTCAGCAAGGTGGCCAGAATTTCGCTCTACGCTAATCTCCCAGCGACCAGGCTCTACCTTGTACCGAAATGTCCGGTATTGGGGCGTAAGTGTTGCCGCGACAATGTTCTCCCTACCCAGAACGATCGTAGTACCAATCGGCTTTCCTGAATCATCGATTTGGCGCGCGTACACATTGACGCCGGTGCCAGCCGATTCCAACGTCCCATCATGCGCCGCGTAGAACAACCCCTTTGGCAGGAGGATATCTATAGCGATTTCACTAGCCAGGGTACCCGGCGGGTTTGCTGCGAACGGCCCTTTGGGCCCGGCTCCTTCCACATTGATCGCAGGTAACTCAATACCTTGTACTTCCGCAGAAGTGACGACATTGTCTGGAAACAGCGTCACCTGCCCGCCAGGCTCCACCACCTCATACTCGACCTCCGAAAAATTTCCTATCGGAGTCTCTTCGATTCGTATCTCTTCAATTTCATAGCGCCCTTGTCCAACGCAAAACAACTGGTAGAGATGGGTCTGATTGTTGACCATCTCCGTGTAGGGTTGCGCAGCAAAATCGAGGTACGAACGATACCTGCCGTAGCGAGCAGGTATGGCTTCCATTGGACGCGCCATATTGCCCTGTGCGCTTAACGTATAGGTGGGACTGGCTTTCTCACGCTGCAGCGAGCCTGGCAACCGTGCTGGTGGAAAAAGCGAGTTCACCACCATCCCACCGACCAGACCAACGGCCGTCGCCGCTCCAGCACCAACAGTCAAAGCAGCGGCGCTAGTCGCCGCAACCCCGGCAGCGCCGGCGTACGCAGATGCCGCCCATGCTCCTACACCCGCCGTAGCTGCAGCCAGTGCCGCCATAGCGACCACTTGCAGCGGATTAGAGCCCCCACCCCCAGCCGGCAAGACAACGACCGCCACGACATCATGCTTTCTCAACCGAACGTGCCACGCCGACTGAACCTTCCAGCTTCCATTGAGCTGCACGACAAAGGTCCGTGTGCGCACAAGACTCTTGCCCCGTCCGACGATAAAACCTTCCCGCCGCAACACCGTATCCAGGCGGACACCTTGTGGTGCCACGATGGTTTCTTGCCGCAAATGTGGCCGAAACGGATCGCGCTGTATCGTGATATCAGGCATGGATTCGATAGAAGATAGGCTGAGAAAAACCCATCGTGAACAGCGCGCGCATGGGAGAAAATATGACGCCCCGCCCTTCTAGCGCATGCAGTACGCCACCGCCGTCAAGGTCAAGATAAATGCCGACATGCGGATCATTTCCAGCACGCAACATCACACCATCGCCATGCTGAGGATGAGTCACAATCTTCCAGGCCCCCGTGCGCATCTTGTGCGCATACAGCGCACGTGCTTGCTCACCCAGCGCAGTTTCAGGTATACCGCCTTCAAAGTATCGCTCTCGACATTCCCTCAACAGGCCCCAGCAGTCATAAGCGTCTGGTCCTCGCCCACCCAAACGCCACATCAAGCCGATGTAGCGATTCACATCGCTGCTGGTCATCGGAACAACCCCGGAAAGCGTTCACGCACGTAGCGCTCATGTGGAAACGCCCAGTTATGGACATCAGAAAGCGTCGCTGTTCCAGACACGGAAGAACCCGTCACTGTCACCTTGTTCAATTCCATTGTGATAGGCGGGTTCATTTGAGGCATGCTAAGGTCCGTCGACAAATACGGACGATAGGTAACGTAGATGGGAAACCGTGACTGCACAGCCGCTTCGACATGATCGACGATCTGTTCGCTGGCACCGTCTATGGCAATAAGCAGCGATGGAACCTGACCTTCTTCAAAACCGGGCAATCGGAATCGGAATGCACCTGCCTGAAACATGACGTCTTGCCCGCCGTCAAGCGGCGCCTCAGTTTCCAAGCGGGCACGGATGTCCTCATACCCGAGCACAACGCGAACAGCGGTTGGCTCTCCATGCGGATCTACGAATGCCGGGTGACGCAGTTCCAACGTATCGAACACCACACGATCTTGCGGCGCACTGGCGTAGGCTTCCTTCAAGGCTTGTTCGAGTGACATGACAAAAGCACGGGACAATATGTAAATGCAACGCGAGAGGCTGCAACGCCATTCCGGCATTGCGCATTACGCATCGCTCATCGTTTCCAATTGACCAGAGACACGCCATAGGTCTCCTGGTATCCGTTCTTCACGGGGAACGGGAAGCAACCACCGAACCTTTCTGAGCTTCAGCCCACCTGGGCCGTTGATGGCCATCAGGAACCATCCCGCATAGCCGTTCAGATCGATGGAGCAAAACCGCTGATAGGCATCGTATTGATCACCATCCAGCACGAAGCTCACGGGTGCATGAATCGGATACACGCGGGAATGTCGCCGGTGTCGGGAACGCCCACTATCCATTTCAGTGCGTTGAAAAGGCGAGATAGGCTGGCGCGAGAATTCCACCAACGGCAAGCCCGCTGGCCAAACTGGAAGGGGCATATACGAAACCTATGCGAGTTGACGGCTCAGCCCGTAACGCCGCTCCAGGGCACGAGGCAAACTGCCCATGCCTGAGTCGATGTCATGGGCGAGCTGGTCCTTTACCTGGCGGAAGATTAGATCGAGGGTCAAGCCGCCGCGAGCGTCAGGCCGCGCACGAACCTGTGGCTGGGACTCCACACCGTGCAGGTTCACTGTCACAGGCGTCGAGGGGCGATAGGAACTGTGTGTCAGTGGTGTGACATGTCCACCGTCCCCACCCGCCAACAGATAGGTGCGGCCGCCCTCGTCATACAACTCCGGACCATTCTCAGCCACTTCATAAAGGCGGCGCGGTAGGGTGGGGCCGCCCATCGCGCGTCTACCAGCCAACTCGGGCATGGCCCAACTGGCCGTAGCCGGAAGCGCTGACCCGAATGCGTTCCTGAACACACTGCCAAGAGCGCTTGCCAACGGCCCGGTTATGCTCTGCCGTACGGAAATGCGCGTCAAGTCTGCAATAATGCTATCGGCGAAGTCGGCAAAGCGAGCCTTGCCCGTGACGACCAACTTGACCAATGCATTCTCAGCCCCTGAGAACGCATTGGCGAATGCGCTGCGCGTTAACTTCGCGACATCGCTGACCAGTTCAGCGTAGTCGTTGAACGCCTGCCTCGCCCCTTCCTTCCAGTCCTTTTCTAGAAGCCGCGCCTTGTTATAGTGGTCGGCCAGCAGTTCCAGACGCCGCTCTAGGCTCTGTTTGAGCACACGAACGCGATCCGCATATGCTTGTGGGGTTATTTCTTTCGCCTCGTTCTGCTCTGCTGCGCGCTGCACTTGACGCTGAAAGTCGCGGTAAATCTGCTGCTGAGCGTGTAGTTGCTCGCGCAGGCGTGGACTGGCCGTCAAACCTGCCAACAGGTCGTTGTAGCGCTGTTGGTCAGCAATGAGCGTCTCCTGCGCCGAGCGCTCCAGCACCTTCAGCTGAACCGCTTCCTTTTTTAGGGTGATCTGGTCCGCCAGTCCGGCGTTCAACTCCAGCTGCTGCCGGAGGGCCTGTTCGTTTGCCAGGACGCTCTTCTCGTCCGCGCTGAGCTGGTCCCTTGCCTTCAGATCCGCGATCCGCTGTTCGAACTTGACCAGTTCCTGGCGCGCTGACGTGATCTTGACGGCACTCTCCAGCTGAGCCCGCAGAGCGGCTTCCTGCTCGCGGGCGCGCTCCAGCTCCCGGACACCAGAAGCAACAGCTCCCTTCGACCCGGCGAACTGCCTCTGGATCTGCGCCACTCGAGCGACGTGCAGCTTCAGCGCCTTTTTATACTCGTCGCTGTTTTGCTTGAACTCGGCTGTTGCCTTTTTGAATGCTGCGTTCTCTGCCTCCATGGACGCCGCCAGTGACGCACCCTTGTGCGACTCCAAATAGCTGTCCAGGTCTTTGCGAGCCTGAATACCGCGCGCGACGGCGCCAGCTTGGTCGGCGCGAGACTTGGCCGCGGCCTTTTGCCACTTGTCCAACTCCTCGAGGCCGGCGATCTCGCCACGCAACTGCTTGATCCGGTCGTCATCGAGGAAGGTGCGAAAGCGCGAGGTCTCCAACGACTGGAGATTCTTCCGTGCCTGGGCCAGCTTCTGTTCAAGCGCCTCTTCACGACCGACCGCCAGCATGGCGTCCCAGGCGCCTTTTGCGACGTCGGTCACCGCTTTCCATGCACGTTCCAGATCGCCAATGTTCTCAACGACCTGCGGGTAGCGCTCCTCCATTGCCTGTGCGTAGGTGTTCAGCGCCAGCCGCGCAGCGTCCTGAGTCCGTCCCTCGGCCTCCAGCGCCTTTACCTGGTCATAGACCGCCAGCGTCAGGAAGTGGTAGCGCTCGTTCAGTTTAGTCAGGGCCTCGGCGGGCGCGTCAGCGATCCGCTCATAGTCCTTGACCATTTCGTCGACGCTGCGCCCAGTGGCGGCCTCGGCCAGTACCGCAGCACGGCCCAGCCCCTCAATCGAGTCGCCGGCGATTTTCCCGGTCTCGACCAGCTTCGTTAGGGCTGCAGCAGCGTTTCCGGTGGTGCCCTGAATATCGGAGATCCGATTCGCCATGGCGGCGAGCTGGCTTTCCGTCACGCCGGCCGCGTTGCCAGTCAGCGTGATAGCGGCAGTAAAGCGCCGCCCTTCCTCTGCCCCTTGTTGGTACGCCACTGCTAAGGCGACTGCACCCGCGGCCGCCGCGGTAAACGGCGTGATGAGGCTGGCGACATAGCCACCCACGGCCTTTATCGCCGGCCCAATGCCGCCGAAGAGGTCTTTCAACTGACCGCCTTGCTGCAGGAGAACGTAGAAGGGAGACTGACCCGTGGACAAGCCTACTGCGATATCTGTCATCTGCATCGGCAGTGAACGCATGGCCGTCCGCATTTCGCCCACCGACAGAGTCGCTGCGGCGGTCTGAGCCTGAGCGGCCTTGGCCGCCTTGCCCATGGCTCCAAGTCCTGTAGCTGCCGCCTTTCCCGCCGTACCAACCTTAACCGTCGCCTGCTCAGCTTTCGCGCCGGCCGCCGCCAGCTTGTCAAGATCAGTAGACGCACCTTTGACTTGGGTGCTGTCCACGCGCAGTACGAGAGAAGCGACTTCATCAGCCATAAGGAACCGTTTACACCCAGCCGGGGGTTACTTCTTGTTCATCATCCGCAGGGCTGCGGACTCCATGACGCGCACACCGTCGAACACATCGATCTCTTGTTCCGGCGGGACGCCAAGCATACGCATGACACCTGCGAGCGCGCCGTAATCGAGGCCAGTTGGCCCGGCGAAGCCAATGCGCCACTGTGAGCCCATCGCTTCGAATACCACCTTGGGCATCACGTTGTCCGGCCACAGTTCGATTACCGCGGCGGGGAAATCGTCTGGTCTCAAGCCAAACTCGGCCAATTGGGCCTTATCCGGCATCGGCCGGTACATTTCCTCCGCCGCGGCTATCAGTTTTTTCGGCGAGCCTGCAGCAACTCGAGGCTGTATGCCTGCACTAATGCCGGTACTGCGCCCTGGTAGTTCTGGATCAAAAGCCCGACTGCCTCGTCGCTGAATTCCATGTCGGGGCCGTCCCAGCCGGCGATCATCTCGTTCACCAGTGCGATATCCTGGGACGCCTCCGACTTGTCGGCCCGCTCCAGGAAGTCCTTCATCTCGTCCCGTGATTTGTGCCTGAACGTGACCTTGATATTGGCTGGCTCTTCACCATGCCGGGGTATTTCCACCGGTACTGTGAAGGTCGGAGCCGGCTGGAGCTTGAATATGATGTTGCTCATCTCTCCCCCTCATCACGCCAGCGGCGCATAACGTGTGAAATCAGACATCATGGAGAACGTGGCGGTGTTCTGCATATTCACGTCCAGCTCCATCGACGGGTCCGAATCGAAGGACGGGTACACCAGGTAGTACAGTTCGTCGTGGTTGGGCAGCTTCGCCCTCAACACAACCGCATCTTTAGCCGCGTCGGCTTCTTTCAACGCCTCATACCATGCCAAGGCGGGGTCGTAGTCCAGCGTCAGAGTGATGAACTTGGCGCTCTTGTAGGTCGGGCGTTGCCGTTGACGACTGTTGCGGTCTTCGACGTACCTCCATTGATAGAACTGCTGTTCACCTCCTGTCTTGGCCACATTGGTGACCTGTGACAGGTCTACCCATGTCGAAACTGGCGTTGCCGTGCCAATACCCTGCCCCTTGGAAAACCGACCGACCTTCGTCGTATCGATCCCCTCCAATGCGAATGTGTTTGATGCTGTGTTGACCGCACGTACAACACGTTCGTTCAGCTCCGGCCAACCGGACTTCATGATCAGGATCGTGCCTGCCTTCGGCGGACTCGTCGCGCTGGCGACGGCAGGATTGGCATTAGTAATTGCAGAAACAGCAACAGCCGCACCCAATCCAGTAGATACCGAGAAGACGGTGCCGTTGGGGAATATTGCGCTGATGATAGTTCCTTAGGGGGCCAACGGCCCCTCATCGAAGCCCAGAGGGCAATAAAAAACCGCCATGTGGCGGGTTCCAGTTGCGCCCTTACGGGCCATCGGCATACGCCGAATCTTCAGATCGAGCATCCTTCGTGCAGCTTCCGCTTCTTGGCTACATACGCCGCATGAGCTACGGCGGGGTCATCGAACAGCCCGACCTCGTGTGCCTTCCCCGCAACCTGTACGCGACTGCGCCATTTCTTCGCACCTCGCTCCCAATACACCCCTAGGTAGCCTGATTTATTGTCAGCCTGGGGGTGTCGCCGGTTCTGCATATTCACGGCCTGAGGGACATCCCGAAGGTTTGCAATGCGATTGTCTGAGCGGTCGCCATTCATATGGTCTATATGCTGTGTGGGCCATGCTCCGTGCATATATAGCCAGGCAAGCCTATGCGCCAGATACCGCTGTCCGTCGATGCCGACGCGCTGATAACCGTTGGCGGTGGCATGGGCCGCATCGTCGCCCACATTGTGACGCTGGGCGAGGCGGACCAACCGCGTGAACTTGCCCGTTTCGGGGTCGTAATGGACAACTGAACGCAGTCGTTCCGCCGTGATTCTGGCTTCGTTCATTGCTATTTCACTCCGGGTAAAACTGGACGTCATATCCCAGGGATATGGGCACGGTGTGATCGGCGTCTCCCGTGGTGGGCTGTCCGTTACTGATCGGTGTGCGCACGCGCACCGCGAGGCCGCCGGACTGCATGACCAGGTTCACGGGGAACAGCGCGTCAAGCTCCGCCGCAACCTGCTCCGCGCTGCGCGACCCGTCGCCGATCGGCATCACCACGTTCACCTGGAACACGCCGCGGTACTGCCGGTGATCGCCGGCGGCGTCCCGGCTGATGGTCGCGGCGGGCATGACATAGGCGCGCAGGTAGACCCCAGCGGCGGGCGGCGTGAACTTCGTGTTCTGCCACGCCACGGGCAGCGCCGGCGTGCGGGCCTTGGCCCAGTCGCTCAGCCGCTTCTCGAAAGCGGCGCGGATCAGGTCCTGGCTCATTTGTTCGCATCCTTCGCCGCCTGGCTCACGTATTGCTGGAATTCCTGCACCGTCAGCTTGACCATGCCCTGGGGAGCCTGCTTTGACCACCCGTTTTCCAACCGCACCGCATAGGGCAGCGAGTTGGAAAGGTAGGTCACACCGCCAGCGGCGGTCTGCCGGATCTCTGCGACGAGGCGATGCAACGTCACCTGCCCGCCTGGATCGATCGCCATGGTCGTGCCGCGCTGCACGCCCGCCGCCGAGAATTGCCAGTTCGCCCGGAACCGGCCGGTGTCGACGGGCGACTTCAGGATCACGCCCTGGGCCAGCAGCACCGTGGCCTGGCGCGTCGCGGTGTCGACGTTGCCCTTGGCGCGCGCGACGAACTTACCGAGATCAGCGGTGAAGCTCATGCTTGCCTCAACTGCAGTTCGAACAGCAGCACCAGGCCGGCTGGCGCCAACGTCTTGACCGTCACCACGCGCCAGGTGGCGCCCAGCGCCAGCACTAGGTCGGCCGGCTTGGGCTCGGGCATCGCGCCGCCCGCGGCCAGCTCCGGCGCCAGATACATCTGCTTGTCGCCGGTCTCGATGACGGAGCCGGCCATGTTGGCCAGGCCCGCGGCCTGCGCGGTGTAGTCGAACAGCGCGCCAATGCCGTCGTTGTCCACCGTGGTGGTGGACGCCTGACCAAGATCCGGGTCATACTCGCCCGTCACTATCTGGCGCACAGTCACCGGGCCGCCGAACTCATCCAGCAATTCTTGGGCGGTAGCGGCCATATCGGCATAGTCGAAGGTGGCCATCAGTCGGGCTTCCCTGAAACATTCACGTCCATGATCAGCGTGGCGCGCCAGATCGGCTCATCGGTACCCGCTTCCAGCTTCACCGCCACCAAGCCTGGAATCGGTGCGCCGTCCGCCGTGTACAGCCGGATGCCGCGGCAGTCCTGCAAGCCTGGCGCATCGGTGGGCGTCGGTAGAACCAGGCGAAGGAAGTTGCCCATCTCAGCACCTCACCAGCTTGACCGACGAGCCGTAGGACGACAGCCAGCGGCGCAGCATGGCCGTCACGCCCGCATAGCGCGTCTGGCCGTCGTTGCGCGCGCCGGCGGCGTTGGCGTACTTCGTCGTGATCGGGCCGACGGTCTTCTCGATAGCGGCGCCCACCGTGGTGCCGCTGACGTCCTGCCACAGCGGGCTCTTCAGCGCACGCGCCGCCAGTTCGCAGCAGGCGTTCACGACCTCGCGCGGCACGCCGGTGGCGACCGTGCGCGGCCATTCCAGCGCCTGGATGTCGGTGGCGCGCTCGCCGCGGTAGGTGTATTCGCCATCCAGGTACAGCGTGGCGTTGCGCAGCGCGGCTTCCAGTGCCGCAGCCTCGCCGGCGAAGGCCAGGCCATGGTCGGCTGCATAGGCCTGGCAGTCCGCCACGCTCACGTAGCTGTCCGCGTTCGCCAGGCCGGATCCGTCTTCGACGATCAGGGGCATTGAGGTATCTCCACAGGCTGACGGAAGCCCCCGCGTGAGCAGGGGCGACCGTCAAACGGCGGTCAGGCCTTGGCCGGATCCTTGACCGGGTCCTTGGGCGTCGGCTCGAGTTCCTTCTCCTTGGCGGCCTCGGCCTTGCCCTTCGGCCGGTACTCCGGCTTCAGGGTGACCTTCGGCACGTCCTTGGCGGCCCCCTTGCGGTCCTCGGTGGCGTTGGCATCGACGATGCGCACGCCTGCCTTGGCGGCCTCGGCCTTGACGTCCTGCTCGTAGCGGTAGAACGGGCCCGGCAGGTACCAGATGGGCAGCTTTGCTTTCATGGTGGTCCCTTACTTGGAAGCGTCACCGATGGCGATAACGCCGGCGGTGTGCTTGATATCGGTAGCCACTTTGTCCCAGTTGGTGCCCGTGGCCAACTCGGCGTCGGTCGGCGACTTGCCGCCGGTGGCCTCGTCCCACGTGTAGCCCTTGAGGCCCAGACCAAATGTGTAGTCCGCCTGGAAGGTGGTTTCGATGCGCTCCTTGCCGTTCGAGGTTTCGATGTTGGTGATCAGATCGCCGCCATCAGACACTGTTGCAGCGCCGGCCACCAGACCCAGCACCTTCTGCAGGTTGGGCGTGCCCGTGGCATAGAGCGCCGGCGCGTCAGTTACCACCACAGTCTTGCCCAGGATGTCCACAACAGTGACCGCACCGTACTCGAACAGTTGCTGAGCGTTGACAAGATTCTGGCCGATCAACTTGTGGTAGACCTGGCCGCTCATCACGTTGGCGACGATCAGACCGGAGCTATCGCCGAACTTGGCATGAGCGTCGTTCAGCACCGAGTAGTTCAGTCCGGTCTTGGCCGAAACGTTGACCGTTGCCAAAGCCTGATTACTGATGGCGGCCACTAGCGCGGCAATGGCGGTATTCAGCTGGTCCTGCAAGAGCGCCTCGGCGAAGTGGCGCGAAGCCACCTCGATGCCCTCCGCCGTAGGCTTCTCCAGCCATGTCATTTGCGACGGCTCGTAGCGGATCGGGCCGAAGCCGCCCGCGACCTTCACCGAGCTGTGCTTCAGCTGGGTCAGATCGGTGGGCGAGGCGCTGCCATTGGCAGCATAGCGATCGACACGACGACGGGCGCCGTGGATGGCTTGGTAGAACGATTCCTGGAGGAAGTCGCCTTCGAAGCCGGCCGTGGTCAGCATGATCGCGCCGCGCGAGGCAGCATTGAACTTCTGGATCTGCTGCCCCAGCGTCTCGATGATCGCGGGCATGAAGTACTTGTTAAAAACCTGCATCTGCGAGATAGACATGAATTCTCCTCTATCGTTGTGCGGTATCAGCCCGAAAGCTCGGGGAATTTGGCCTTCAGGGCTGCCACGCGATCCTCGCGCGAGCCGCCCATGTTGCCCGTGCACTTACCGCCACCGTTTCCGCCCTGGCCGCCACCGCCGGTATTCGCGGGTGCAGTAATGAAGTGCTTGCCCTGATCGGTGCTCGCCCATTCCATGACGTGGTCGTCCAGTAGCTTGTCACCGATTACCGCTGCACCGTCCTTGATAGACGTTTGGCTGCGCAGCATTGCTTTGACGGCGTCCATGAAGTGCGGCGCCACGCCGGCCTTGGCCAGCGCGGTCGACAAGCCGCCATCGATCAGGTGCTGGGTCAAGGCGCCCTCCTTTTCGGTCAGGTCCTTGGTCAGCTTTTCGATCTGGCGGGCGCTGTCCTTGGTCGCCTTCTCCAGCTTGCCGGTCAGCTCCTCGACTTGGGTCTGGAGCCGGGCGTGCTCTTCGGGGTCGATCTCGGAGCCCTTGGCTTTCGCCTTCGCCGTGCGCAGCTCGGCGATCAGCTCCTTGTTCTTGGCGCTCAGCGCCTCGGTAGCCTCGGCAGTCACCTCTTCGATCAAGGCTTTGACTTCGGGGTCGTTACGGTCAAGCGGCATGGTGTTGTCCTCTGGACGGTTGCAGGGCACAGCCCCAAATACAAAAGCCCCGCCGACACAGTCGGCAGGGCTAAGAAAGAAAAAAGGCCCGCGCAGTGGCGGGCCGGACGGGAATGGCTCAGATCATTTCAAAACGACGCGCTCACCGCGCACGAAACACAGCGCGCACAGCAGTACCTTCGTTCCGCCCGACCACGAGCGGCCAGACTCGAACACGCCAATGCGGGTCTCAATGACCTCGCGTGCACCACAGCGGTGACACTGGATCATGTCTTTCGGCTTCGGCAGGGCCTTGATCCGCTTCCGGATACGGTCCTTCTCCGTTTCCGCCGGCTTGGGAGCGTCGGGTACGAGGTGGAGAGGCATGCACACTATTTTACGCCGGCCCGGGCAAACGCGGCAGCATCCTTACGCCTCAGCTCGGCCAGCGTGAGATATACGCCTCGGTCGTTGTAGAAACTTTCCAGCTCAACCCCCCCCTTGCGGAACAGCGCGCCGCGGGTCGGACCCAGGATATCGTCCTGGATCGCGGCGGGCTGCCTGCGGAGCCACTCCGCATAGGTCGTTGTCGCCCGCACTTGCTCGCCCTTGCCGCGCGCGCTGTCTCGGTAGTCCTTCGCCGCTCTGGTGCCGATGAGCGGGTCATCTTCCATCCCCTTCAGGATCGGCACTGAGCCGCTGCGGCAACACCAATGTAGCTTGCCAGGGCCAGCGCCCCAAGGGACTCGGTGGCCGATCGGTTTGTGATCAGTCGTGTACTGCAGGCCATCGCGCAGCCGGCACATCTGGCTGGTGCGCGAGTCCAGCGTACTGACCCAGACCAGCGCGCCGATGATGTCGTCGTTGGCCTCGTACCAGCGATCTCGGGCAAGGCCGGCCGTGTGGCTGATTGCAGTGCGCACCACGGCTTCGGCGTTGCGTCGGTCGATCTCCAGCAGACCGTCAGCATAGCCCTTCGCCCGAGTGCCGCGCACGCGCTGCACCACCTGCTGAATGGTCTGTCCCTCCACATAGCCCATGCGCACGGCATCGCGGATTCGGCTGGCGCGCCCTGACTCGAGACCGGCCATCCATTCCCGCAACAGGCGCCCCTGGAATGGTTGAGCCATAGCGCCGACATAGACCTGCCCGGCCGTGACACCGCGCGTGGTGAACTCGATGCCCAGCGATTCGAATAGCTGGCTCTGGTAGCCGACCTCGTAGCCAGCTAGGTCACGCAGATCCTTCTCCAACTCGCCGCGCACCTGCCGGTACGCCTCGGCGTTCAGGTTACGGACGTCCTTCAGCACCGCATCCAAGCGCGCCACCGTAAAGGCGCTGGCTGGCAGACGTTCCATGGCCCGGGCCACCTGCTCGGCCAGGTCGATGTCGACGCGGTTTAGCAAGGCAATAATCCGACGCACCACCCCGTTGCTGTAACGCACCAGGTCGATGGAGTGCCGGACGGTGGCGTCATACAGCTCTGTTTGCAGGCTGGCCATCCTGGCCTCCCAGCGTGCCCAGCGCCGGGCCGGCAGCTTCGATGCGGGCTTGCTCTTCCTCGAATGTCACCCCGTCGTCGATGATGCCGCCGCGGCGCATGTTGTCGTAGAACGTTTCCGGGCTGATCGCCGCGGCCTGCAGCGCGCCCACCAGGGCGGTCAGGTCCTGGGCGGTCAGGCCGACCGGGAAGAACTCAGTGTTCAGCTTCACCTCGACGGTGCCCGAGCCGGCGCCTGCCCACTCGGCGGCCCAGCGGAAGGCCTTGGCCAGCGACCGACCCACGCCCAGGGCGATGCCGCCCAGCACGCTGTTCTCGCCGGCTCGGTGGATCTTGGCCGTCTCGGCCGCCTCGGCGTCGCGCTTCTCCGGTGCCAAAATGCGGGCGCCCAGGGTGGCCATCATGCCCTCCTTGCGCTCCAGGCTGACCTTGATGCTGTCCAGGCCCTGGCCGGAGAACTCCAGGTACTGAGCTCGCGCCTCGGCCTCGGAGAATACCCAAGCCTCGGAAGAGCCGATCTTCAGGGACTGGCCAGCCTGCAACTCATGCCCGGTAACAACCGCCGTGGGCAGCGCCGTGAAGTGCAGCGCGTGCTCGTAGTCGGCCGTGCCACGGTAGTGCGACATGTTCACATCGACCAGGTCGAGTAGCACAGGCTTCTGTGGGTCGATCGCTTCACCGTTGCGCCCTATCAGGACGAAGGGGATGTAAGGCAGCCGCTTGCCGTTCATCATCGGCGTGTACTCGAATGCCGGCGTGTTCAGGTCGGTGCGGTAGATGCGCACACGATAGGCACCGTCCGCCAGGTCGAGCACCCGGTACTGCGTCTTCTCCTCGGCGGTGAACTCGTCCTTCTGCTCGGTGTAGGTCTCGGCCAACACCACCAGCACCAGCTGGTTCACGCCGCTCACCCGGGCCGTGCGCCAGTTGATGATGGCCTCGGCCTTGTAGGTGGCCAGGTAGGGCCGCAGGCCGACCGCCTGGGCCTGGCCCACGGTCATGAACTCGCCGCTGGCCACCGGGTAATCCACCAGCACGCCCACGCGGGTGACGTCGATCACCTCCTTCACCACGTTCTCGATGAACGTGTCTACCGGCGTGCCCGCTAGGTCGGCGTCCTCGATCATCGGCTGCAGCGCCGCCGGCAGCGTCACGGTGGGCTCCTTGCGGAACACCATGCCGATCAGCGCTTCCTCGGTGCGGGCGGTGGCGCCGTAGAACAGCGCGCGGCCCTTGTAGGCGTCGTACTCCTCCTGCTCCTGCCCTGCCAGCTTGGGCAGGTACTTGGTGCCGGCCGCATGCACGGCGTCCTGGCCCTGCAGCGCGGTTCGGCAGCGCTCCCATCGCGGCTGGCTGGCCGTCCAGAGAGGGTGTTTGCTGTCGACGGGCATGATCAGGTTCCTGTGAGTTTGATGCGGCTCATGCCGGTGGGCGTGATCGGGTATCGGTGCACCAGGAAGTAGCCCTGGGCGTCGTTCGGGTGGTCGTGCCCCGTCGACTTGTCCGGCTCCCCGTTCTTGTCGTAGGCCTGCTGCTCCAGCGCCTCGGTCAGCGTCGGGCACCGGTCGGTATTGACCAGCCAGCGCCGGGCGCCTTCGTCGTTGAGCAGCATGCCGTTCACGGCGTTGATTCGGTCCTTCACGGCCGGGTTTCGGCTGTTCACCCGAACGGTGAACCCCGCCTTGCGCAGGATGCTCAAATCCGACTCACTGGCGTTTTTGCTGCTGGTATTCCCGCCGCTGGCGTCGGGGTAGATCGTGACGCCGTGGCCCTTGTCCTTGAAGCGCTCCTTGAGCATGCGGGCCATTTCCGGCGTGTCGCGCACCTTCGTCAACTCTCCCACCGTCAGCGGCAAGCCGGCCCGGATCACGTTGACCGTCGCCGTCATGTTCAGCACGTTGAAGTCCATGCCGATGTGCAGCTCTTCGTGCGGCTCCTCGGCGGCGTCCGTGTGGTGCAGGCGCCGGTCAAAGTTGGGGTACACGCTACCGCTGGTCAGGTTGGTGAACTGGCCACGCAAATACGCCGCGATCAGCTGCGGCGGATAGCTCGCCCGCAGCGACGGGATGTAGTCTTCCGGCAGGTTCTTACCGTTCTCGTAGGTGCTGGCTTGCACCAAGCCGTACAAGGCAACCAGATCGGGCCGCTCGCGCACCTGCTTGACGAACTGCTGGTAGACGAACTTGAACCCCTCGGGCGTCGTCGTGACGTCCACGCCGTTGATCAGGCCGGGCGCGGTGTGGCGCAGGCGAGCAATGATCTTTCGCCAGGCCAGCGCGGCCTTGTCCGTCTTCATGACGTCTAGCTCGTCGATCAGCCCCTTGCCGATCTTGAAGCCCACGATGTCGCCCGGCTTCTCCATCGACCGGCAGATCACCGTGCCGCGGTACTTGCGGCCAGCGAACAGGTGCACCTCCTTGTTCGACTCGTTGATCTTGGCTGCCAGCCCCCAGTCGTGGGCCACCTCCTCGATCGTCGGGTAGAAGATGTCCCGGATCTGTCCGTAGGTCGGCGCGAAGTAGCCAGAGTTGACCCGGGGAAACTCCCAGGCGTGGCGACACAGTCCGGCGCCACCTACCCAGGTCTTGCCGCTGCCGAAGCCGGCGACGAACGCGCGGAACTTGTGCGGCAGCGCCAGGAACCGAGCCTGGGGCTGATTAAGGCTCGGCATCGGGGACGCTCGCGTCCTTGACCTCGATCACGACCTTCACCGGCGGCGGCGCGTTGTCGTCGTTCGTGGAGTCCGGCTTGTCCCGCCAGCTATCCGGCGACCGATTCTTCAGATAGAAGATCATTGCGGTGACGTTTCCGCCCACTGCCGCGTCATACAGCGCAGACGACACATCCGCGATGCCGAGCGCCTTCCCTTTTTTAAGGGCCGCCTGGAGCTGTTCATTGCTCGCCTTGTGGCGGCGTAGAGTGCTGTAGGAAATTCCCAGCGCGGACGCAATCTGCTCTTCGTTCAAGCCCTTAGAGGCCAGCGCCTCTATCTGCCCTAGATCGGGCAGTTCTTTCTTCGGTCGTGCCATAAGCTCGCGGTCCCTCTGGGAGCGACGCCGCAGGCATCGATTCCGCGTTGAAAGTGATTCAGGATGCGCCCATCCGACTTACCCGCCAACGGAGCGAGCTGGGCGTGTGCGGTTCTCGTCTACCAGATCCAGCGACGAGGCCGGGGAGAAAGCCCCGCGCGCTTTGATATCCCGCGCGGGCGCCCGTCTGGCTAGGCGGTGTCCTGGGGCGGTGATTCTTGACAGTCCCGAGCCCGCAAAGCAAAAGCCCCGGCCATCGGCTCGGGGCTTCGTTTCTGACGGACGCACAGCGCCCGCCATGGGCATCGGGTCACGTCCTTAGACGGTAGTCGGTCTGTCTTGGGCTGGATTATGCATAACAACGGCGTAGCGTGCAACAAAATCCTCGAAGTTGCTGACCGCCCGCACCAGCACGTCGTCGTATTCGCGCGATCGAAGGTCCAGCGCGCGACATGTTGCCCGCCAGTACGAGCGCGTCACGTAGTGGGCCCGCAGGATGTCGCGGTGCTGATGCAGCATGCGGTAGACCGAGTTGCGCCAGGCAGCCTCGATGAGACCTGCGTCGCTCTCGTCGAGCTCGCGCATATCTTCCTCGCCTCCCCATGCGCCCTGTCCTGCCCGCTTCGCAAGCCTGCGGCACACCTCGTAGGTAGGCGAGACAGCGTAATGCGGCCGGCTACGCATGACTTCGCCCCAGTTCTCGAGGCGGGCATGGAAGTCTGATGGCAGGCGATCCAGCAGCAGCTTGGGCGTCTTCATCGACCTCGTTCCTCGAAAAGTCGGCACCGCTGGCCTACCTGCATGCCATGACCGCAAGCCAGAATGCGGCGCCCGTCGAATTCGCTCTTGACCAAGCGGATATGCGCGCAGCCAGCGCAACTGCGCAACGGCGGCGGCTCTTGGCGGCGCTCTAGCACCTTGAGCGGGTCGCCGCGCTCGGACCGGCGGGCCCACGTCATGCTGCACGCTCCTGCGCTACCGCCCAGCTCAGAATGGCCAGGGCGTCGGCGTCGTTGTCGGTCTCGGGACGGAATCCGCGGGCCTTCGCCTCAGCGATCATGTCGGCCTTGTCGGCGTTGCCCTTCCCCGTCCAATGCTTCTTGATCGTGCCCACACCCACAGGCAACAGGCGCAGGCGATGGCTGTCGGCGAGCATTTCCACGATGCACAGGAAGGCGCCGTAGGCATGCGCCGCGTCCGTGCCGGTGTGCCGCTTCACATCCTCGTAGGCGATGGCGTGCACCTGGCGCTGGGTGATCACCTCGACCAGGAAGGAACGGGCGCGCAGCCAGCGCTGGCCGGGCGACCAGCTGGCGCGCGGCGTGAACACCTCGGTGCCGTGGGAGGTTCGGCCGTCGCGCCCGCGCACCGCCCAGCCCAGCTTCGTGCCCAGGTCCAGGGCCAGGATGGTGACGTTCGGGCCCAGCTCGGGCACCACCGTAGATCCAGCATTGGCGCGGCGTGGCGCGGCGTCGGGGGCCGTTTCAGCACCACCTCGCGCCCAGGGATCTGCGACGTCCGTGTTAATTTTTTCGAGGTCGAATGTGGGCACGCGCGCGTGGCTGCCCGCCAGCGTCCCCGCCAACGGGTCCAGCGGAACGCCTGCCGGCTGCCCGGCGATCAGGTCAACGTGCGTCATGCGAGGGCTCCAATCATGTCCAGGGGCTGGCGACGCTTGTCGCCGGTGAATTGCAGGCTGTCGGCGTGGCGCCAGAGCTGGATCCGCCCTTCCCATTCGCCGTGCCGATTCTTGTCGCAGATCAGCAACGTGTCAGGGGAGTCGTGCGTGTCGGCGGAGACTTCTCCGTCCTTGCGCAGCTCGGCCTCGGCGATCCGCTCCTTTTTCTTGTTCCGCCAGACGGTCAGCATCTGGTCGACCTGGTCGACGATGGCCCCCGAGCCCTTGGCCGAGAACTTCCCCGGCACCTGGTCCTCGTTCTCGCCCTTCTTAGCGTGGTGGACCAGGTGGATGTGCATCCGCAGGTCGCGCGCCAGCGTGCAGAGCATGTCCACGAAGTCCTTCTGGCCGTTGTAGTCATCCTCGCCCCGCACGCACTTCATCAGGCTGTCGATCACCATGTGACGGACCTTCAGGCGGTCAGCGCAGTACCGAATCACGGCGTACAGCATGGCCGGCGTCACGGTGCCCTGCTGGTCGTACAGCCACAGCCGGTCCCGCGACCAGTCGATGAGGCGGTCGACGGCCTGCACGCCAGGCCGGGCGTTCATCGCCGTTTGACGCAGCATGCGCTTCAGGGTGGCCTGGGGCTTCATTTCGAACGAGGCGATGCACACCCGCTCGCCCTGGGTAGCAAAGCCGATGCAGGCCTGGCCCAGCAGCTCGCTCTTGCCGTGGCCGTTGATGCCCTGCCACAACGTCACCTCGCCCGGCCGGAAGCGCAGCAAGTCGTGCGTCTTGGACCAGGGCAGCTTGGCGCCCGTGATCTGATCCCCGTGCTCAACGGTGCGGACCAGGTCGTCGCGCCACGCCTCGGCGGCCAGCACCTTGGCCTGCGGCTCGGCCTCGGCCATGTAGGCCTGGAAGTCGACGTCGTTGGAACTGATGATCTGGCTCATACCCGAAGCTCCTGTAGGTCGGCGGCCGGATCCCACAGCAGGATCCCCCACTCGCCCGATGCGATCGCCTTAGCGGGCGAGAAGTCGCGGACGCGGCGCAGCAGCTGCATTGCCCTGGAGCGTGACGGCGCAACGATGTGGACGACCAAGCCGACCACGACGCGCAGGTCCAGCGCCGCGGCGTTCTCGTCATCGTGGATGTGGATGTCCGGGAACCCTACCCAGCGCCCGTTCGTCATCTGCCCGAGCTGGGCTTCGGGGTGCGTGAAGCGCCCGCAGGGCTGTTCGGCAGTCAGGCAGGTCAGCCAGACGTCGGTGGGCCGGTAGCCACCCATGCGGGCAGCGATGAGGCTCTGGTGTCCTATCACACTGCCCCCGTCCATGGCTGGTCGCTCCCCAGGGCCCCCTGCAACGCCGCGTCTGCCTTCGGCGGGTAGAACGTGTCCCAGGCATGCAGGATCGACTGGTCCATCATCGTCGCCACGTCGTGGCCAGCAGCTCGCAGCGCGTCCAGCTTTGTCACGGCCAGCTTGCGGGCTGCGTCGGTCATGGGCTTTTTCTTCTTCCGCCGCATTTCCTCGAACTGCCGCCAGGGGTCAGCAGGGATCCAGTCCGGCAGCCTCCAGCCCTCGGCCCCCGGCAGGGGGCTTTGGGGGTTATCTTTTTCTTCTCTACTCTTCTCTTCTCTAGGCGTCACTTTTGCGTCACGCGTTACGTTACGCGTGACGTTACGCGTGACGTCACTTTCTAGCTTCTGACGCTCGCGATAACGCTGCTGTCGAGCGGCTGATTTCGACTTGGGAGACGCGTCCGGATCAACGTTGTGATCCTCAAAAAACCTCGGAAATACAAGGCCTTCCGCAGTGCTGACGACCCAGCCAACGGCCTCCATTGCAGCGCCCATTCCAGGCAGATCGGCAATGTCGTCCAGCACGCTTGTGGTAACGGCGCGACATACAAGATCGGTGCCTTCGGCCTTGCCACGCAGCCGCATGACACCCCATACCGAAACCAGCGCTCCTACCGTTACGTTACGCATAACGTTACGCGTGACGCTCATGTGACGCTGGCAATGTTGATTCACGTAACGCGCGAGTTCGCCGTCTTCGTTCATCAAGATATCGGCCATCACGCAAATTCTTGGATCCCTGTAGAGATCCGTCCGCATCTTGATCCAGTCATTGGCCATTACGCGGCCTCCTTCATCTTGTCGTCGTTCGCGGTCAACTTCGCAGCGCAAACGGGTTCCCACCGCGTGTAGCCCCAGTCCCAGGTGGCACGCTTGTGCTCGCGGTCAAGGCCGCTCTGGTCGTACAGCGTGTGGCAGTGGTAGCAGGCGGGAACGGTGAAACGGTCAGGCACCTTCAGGCCGGTGCCCTTCCCCTGGTTCTGGTGCGCCGGCACGACCGTTGGGTCGCCCTTGTAGCTGCAGCACCCGGCGAATTGCTGGTAGCAGCGCTCGCCGCGGCAAGCGGCCAAGTACTTGGGGTCGTGATAGCCCGGGCGTTTCTTCGGGGCGCGGCGCTTGATGACCGACCTCGACATAGGTGTCGACAACCTCGACATGGGCGTCTTGCGCTGGAGAGGTGTACGGCGCAGCAT

Protein sequences of DBSCAN-SWA_2

>NZ_CP020819|3624262:3646631|3635331_3635532_-|WP_004566290.1|DBSCAN-SWA
MGNFLRLVLPTPTDAPGLQDCRGIRLYTADGAPIPGLVAVKLEAGTDEPIWRATLIMDVNVSGKPD
>NZ_CP020819|3624262:3646631|3624262_3628219_-|WP_004566281.1|DBSCAN-SWA
MPDITIQRDPFRPHLRQETIVAPQGVRLDTVLRREGFIVGRGKSLVRTRTFVVQLNGSWKVQSAWHVRLRKHDVVAVVVLPAGGGGSNPLQVVAMAALAAATAGVGAWAASAYAGAAGVAATSAAALTVGAGAATAVGLVGGMVVNSLFPPARLPGSLQREKASPTYTLSAQGNMARPMEAIPARYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDILLPKGLFYAAHDGTLESAGTGVNVYARQIDDSGKPIGTTIVLGRENIVAATLTPQYRTFRYKVEPGRWEISVERNSGHLAERATRMIRDVTWLGLRSYLPSQRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSQDLKPTRNPAWAIADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQIARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVTRSFSVDYVFPAHDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRAQAWREGMALLARNRDQRRFASFQTELEGAIPGYADLVEISHDVPKWGLSGIVEDYDPRALLLTTSEPLQWWQGQNHYISLRGRDGGPAGPFRVEPGSHEREMRIADLVDGHGLYISTGETEEPTHYTFGPGERRALLAQVMRAVPSEGGLWTLDLVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDGVTVFSAPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVHLRAGSWQVRVRGVGALSGPWKTWQGNVSASAAPPPRLSALTAVSQVMAIELAWTVPDAPWISSVEIWESSTSNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDEAGQVGPWYPDGQGVPGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMGRNINTVTAKLDQEREERLNQDGALARRVEDAIAANGASATAVKQTSTALSSLDGRLRATWSVQTQVAQDGKVYAAGMALGAYTNERGRVQTSVYFLADRFAFLNLANGKISTPFVVQNGQTFLNKAFIGTAWIKSAQIESLDAGKIVVGVMSADRINAESLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLGRGGSELATVATGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGAAMITWISDALPGGKTISWSIKARHPVDGTYYIGGRVAVLAIQR
>NZ_CP020819|3624262:3646631|3636345_3637314_-|WP_004566292.1|DBSCAN-SWA
MSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEGDFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWLEKPTAEGIEVASRHFAEALLQDQLNTAIAALVAAISNQALATVNVSAKTGLNYSVLNDAHAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPALYATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTWDEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK
>NZ_CP020819|3624262:3646631|3645025_3645397_-|WP_004566302.1|DBSCAN-SWA
MIGHQSLIAARMGGYRPTDVWLTCLTAEQPCGRFTHPEAQLGQMTNGRWVGFPDIHIHDDENAAALDLRVVVGLVVHIVAPSRSRAMQLLRRVRDFSPAKAIASGEWGILLWDPAADLQELRV
>NZ_CP020819|3624262:3646631|3634122_3634545_-|WP_004566287.1|DBSCAN-SWA
MSQDLIRAAFEKRLSDWAKARTPALPVAWQNTKFTPPAAGVYLRAYVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGGLAVRVRTPISNGQPTTGDADHTVPISLGYDVQFYPE
>NZ_CP020819|3624262:3646631|3645393_3646218_-|WP_004566303.1|DBSCAN-SWA
MANDWIKMRTDLYRDPRICVMADILMNEDGELARYVNQHCQRHMSVTRNVMRNVTVGALVSVWGVMRLRGKAEGTDLVCRAVTTSVLDDIADLPGMGAAMEAVGWVVSTAEGLVFPRFFEDHNVDPDASPKSKSAARQQRYRERQKLESDVTRNVTRNVTRDAKVTPREEKSREEKDNPQSPLPGAEGWRLPDWIPADPWRQFEEMRRKKKKPMTDAARKLAVTKLDALRAAGHDVATMMDQSILHAWDTFYPPKADAALQGALGSDQPWTGAV
>NZ_CP020819|3624262:3646631|3632502_3632832_-|WP_010926424.1|DBSCAN-SWA
MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSEASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQARRKN
>NZ_CP020819|3624262:3646631|3629566_3632167_-|WP_010926425.1|tail|DBSCAN-SWA
MADEVASLVLRVDSTQVKGASTDLDKLAAAGAKAEQATVKVGTAGKAAATGLGAMGKAAKAAQAQTAAATLSVGEMRTAMRSLPMQMTDIAVGLSTGQSPFYVLLQQGGQLKDLFGGIGPAIKAVGGYVASLITPFTAAAAGAVALAVAYQQGAEEGRRFTAAITLTGNAAGVTESQLAAMANRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLAEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYDQVKALEAEGRTQDAARLALNTYAQAMEERYPQVVENIGDLERAWKAVTDVAKGAWDAMLAVGREEALEQKLAQARKNLQSLETSRFRTFLDDDRIKQLRGEIAGLEELDKWQKAAAKSRADQAGAVARGIQARKDLDSYLESHKGASLAASMEAENAAFKKATAEFKQNSDEYKKALKLHVARVAQIQRQFAGSKGAVASGVRELERAREQEAALRAQLESAVKITSARQELVKFEQRIADLKARDQLSADEKSVLANEQALRQQLELNAGLADQITLKKEAVQLKVLERSAQETLIADQQRYNDLLAGLTASPRLREQLHAQQQIYRDFQRQVQRAAEQNEAKEITPQAYADRVRVLKQSLERRLELLADHYNKARLLEKDWKEGARQAFNDYAELVSDVAKLTRSAFANAFSGAENALVKLVVTGKARFADFADSIIADLTRISVRQSITGPLASALGSVFRNAFGSALPATASWAMPELAGRRAMGGPTLPRRLYEVAENGPELYDEGGRTYLLAGGDGGHVTPLTHSSYRPSTPVTVNLHGVESQPQVRARPDARGGLTLDLIFRQVKDQLAHDIDSGMGSLPRALERRYGLSRQLA
>NZ_CP020819|3624262:3646631|3639395_3640814_-|WP_004566295.1|DBSCAN-SWA
MPVDSKHPLWTASQPRWERCRTALQGQDAVHAAGTKYLPKLAGQEQEEYDAYKGRALFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVVKEVIDVTRVGVLVDYPVASGEFMTVGQAQAVGLRPYLATYKAEAIINWRTARVSGVNQLVLVVLAETYTEQKDEFTAEEKTQYRVLDLADGAYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVTGHELQAGQSLKIGSSEAWVFSEAEARAQYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPVGLTAQDLTALVGALQAAAISPETFYDNMRRGGIIDDGVTFEEEQARIEAAGPALGTLGGQDGQPANRAV
>NZ_CP020819|3624262:3646631|3646217_3646631_-|WP_004566304.1|DBSCAN-SWA
MLRRTPLQRKTPMSRLSTPMSRSVIKRRAPKKRPGYHDPKYLAACRGERCYQQFAGCCSYKGDPTVVPAHQNQGKGTGLKVPDRFTVPACYHCHTLYDQSGLDREHKRATWDWGYTRWEPVCAAKLTANDDKMKEAA
>NZ_CP020819|3624262:3646631|3628597_3629131_-|WP_033448593.1|DBSCAN-SWA
MSLEQALKEAYASAPQDRVVFDTLELRHPAFVDPHGEPTAVRVVLGYEDIRARLETEAPLDGGQDVMFQAGAFRFRLPGFEEGQVPSLLIAIDGASEQIVDHVEAAVQSRFPIYVTYRPYLSTDLSMPQMNPPITMELNKVTVTGSSVSGTATLSDVHNWAFPHERYVRERFPGLFR
>NZ_CP020819|3624262:3646631|3628211_3628601_-|WP_004566282.1|DBSCAN-SWA
MTSSDVNRYIGLMWRLGGRGPDAYDCWGLLRECRERYFEGGIPETALGEQARALYAHKMRTGAWKIVTHPQHGDGVMLRAGNDPHVGIYLDLDGGGVLHALEGRGVIFSPMRALFTMGFSQPIFYRIHA
>NZ_CP020819|3624262:3646631|3643207_3643411_-|WP_003813441.1|DBSCAN-SWA
MTWARRSERGDPLKVLERRQEPPPLRSCAGCAHIRLVKSEFDGRRILACGHGMQVGQRCRLFEERGR
>NZ_CP020819|3624262:3646631|3640816_3642094_-|WP_004566296.1|terminase|DBSCAN-SWA
MPSLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFKFVYQQFVKQVRERPDLVALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYPNFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPAVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQAYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
>NZ_CP020819|3624262:3646631|3636078_3636336_-|WP_003813425.1|DBSCAN-SWA
MKAKLPIWYLPGPFYRYEQDVKAEAAKAGVRIVDANATEDRKGAAKDVPKVTLKPEYRPKGKAEAAKEKELEPTPKDPVKDPAKA
>NZ_CP020819|3624262:3646631|3635533_3636016_-|WP_004566291.1|DBSCAN-SWA
MPLIVEDGSGLANADSYVSVADCQAYAADHGLAFAGEAAALEAALRNATLYLDGEYTYRGERATDIQALEWPRTVATGVPREVVNACCELAARALKSPLWQDVSGTTVGAAIEKTVGPITTKYANAAGARNDGQTRYAGVTAMLRRWLSSYGSSVKLVRC
>NZ_CP020819|3624262:3646631|3633358_3633514_+|WP_157835999.1|DBSCAN-SWA
MIRIVPAFGGLVALATAGLALVIAETATAAPNPVDTEKTVPLGNIALMIVP
>NZ_CP020819|3624262:3646631|3642080_3642452_-|WP_004566297.1|DBSCAN-SWA
MARPKKELPDLGQIEALASKGLNEEQIASALGISYSTLRRHKASNEQLQAALKKGKALGIADVSSALYDAAVGGNVTAMIFYLKNRSPDSWRDKPDSTNDDNAPPPVKVVIEVKDASVPDAEP
>NZ_CP020819|3624262:3646631|3634936_3635332_-|WP_004566289.1|DBSCAN-SWA
MATFDYADMAATAQELLDEFGGPVTVRQIVTGEYDPDLGQASTTTVDNDGIGALFDYTAQAAGLANMAGSVIETGDKQMYLAPELAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLFELQLRQA
>NZ_CP020819|3624262:3646631|3634541_3634940_-|WP_004566288.1|DBSCAN-SWA
MSFTADLGKFVARAKGNVDTATRQATVLLAQGVILKSPVDTGRFRANWQFSAAGVQRGTTMAIDPGGQVTLHRLVAEIRQTAAGGVTYLSNSLPYAVRLENGWSKQAPQGMVKLTVQEFQQYVSQAAKDANK
>NZ_CP020819|3624262:3646631|3644087_3645029_-|WP_004566301.1|DBSCAN-SWA
MSQIISSNDVDFQAYMAEAEPQAKVLAAEAWRDDLVRTVEHGDQITGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELLGQACIGFATQGERVCIASFEMKPQATLKRMLRQTAMNARPGVQAVDRLIDWSRDRLWLYDQQGTVTPAMLYAVIRYCADRLKVRHMVIDSLMKCVRGEDDYNGQKDFVDMLCTLARDLRMHIHLVHHAKKGENEDQVPGKFSAKGSGAIVDQVDQMLTVWRNKKKERIAEAELRKDGEVSADTHDSPDTLLICDKNRHGEWEGRIQLWRHADSLQFTGDKRRQPLDMIGALA
>NZ_CP020819|3624262:3646631|3643407_3644091_-|WP_004566300.1|DBSCAN-SWA
MTHVDLIAGQPAGVPLDPLAGTLAGSHARVPTFDLEKINTDVADPWARGGAETAPDAAPRRANAGSTVVPELGPNVTILALDLGTKLGWAVRGRDGRTSHGTEVFTPRASWSPGQRWLRARSFLVEVITQRQVHAIAYEDVKRHTGTDAAHAYGAFLCIVEMLADSHRLRLLPVGVGTIKKHWTGKGNADKADMIAEAKARGFRPETDNDADALAILSWAVAQERAA
>NZ_CP020819|3624262:3646631|3629197_3629557_-|WP_010926426.1|DBSCAN-SWA
MPLPVWPAGLPLVEFSRQPISPFQRTEMDSGRSRHRRHSRVYPIHAPVSFVLDGDQYDAYQRFCSIDLNGYAGWFLMAINGPGGLKLRKVRWLLPVPREERIPGDLWRVSGQLETMSDA
>NZ_CP020819|3624262:3646631|3632844_3633360_-|WP_003813414.1|DBSCAN-SWA
MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNSRQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNHDELYYLVYPSFDSDPSMELDVNMQNTATFSMMSDFTRYAPLA
>NZ_CP020819|3624262:3646631|3637340_3637943_-|WP_004566293.1|DBSCAN-SWA
MPLDRNDPEVKALIEEVTAEATEALSAKNKELIAELRTAKAKAKGSEIDPEEHARLQTQVEELTGKLEKATKDSARQIEKLTKDLTEKEGALTQHLIDGGLSTALAKAGVAPHFMDAVKAMLRSQTSIKDGAAVIGDKLLDDHVMEWASTDQGKHFITAPANTGGGGQGGNGGGKCTGNMGGSREDRVAALKAKFPELSG
>NZ_CP020819|3624262:3646631|3638314_3639367_-|WP_004566294.1|DBSCAN-SWA
MRYSNGVVRRIIALLNRVDIDLAEQVARAMERLPASAFTVARLDAVLKDVRNLNAEAYRQVRGELEKDLRDLAGYEVGYQSQLFESLGIEFTTRGVTAGQVYVGAMAQPFQGRLLREWMAGLESGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKGYADGLLEIDRRNAEAVVRTAISHTAGLARDRWYEANDDIIGALVWVSTLDSRTSQMCRLRDGLQYTTDHKPIGHRVPWGAGPGKLHWCCRSGSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYAEWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRKDAAAFARAGVK
>NZ_CP020819|3624262:3646631|3642770_3643211_-|WP_004566298.1|DBSCAN-SWA
MKTPKLLLDRLPSDFHARLENWGEVMRSRPHYAVSPTYEVCRRLAKRAGQGAWGGEEDMRELDESDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWRATCRALDLRSREYDDVLVRAVSNFEDFVARYAVVMHNPAQDRPTTV
>NZ_CP020819|3624262:3646631|3633614_3634115_-|WP_004566286.1|DBSCAN-SWA
MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYMHGAWPTQHIDHMNGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEGCSI
>NZ_CP020819|3624262:3646631|3632194_3632485_-|WP_003813411.1|DBSCAN-SWA
MYRPMPDKAQLAEFGLRPDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALAGVMRMLGVPPEQEIDVFDGVRVMESAALRMMNKK
>NZ_CP020819|3624262:3646631|3638066_3638309_-|WP_033448595.1|DBSCAN-SWA
MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCHRCGAREVIETRIGVFESGRSWSGGTKVLLCALCFVRGERVVLK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004566281.1|3624262_3628219_-	DUF1983 domain-containing protein	A0A0B5A1N2	Achromobacter_phage	1.2e-219	41.1
WP_004566282.1|3628211_3628601_-	hypothetical protein	A0A0G3EYJ9	Achromobacter_phage	3.3e-34	49.2
WP_033448593.1|3628597_3629131_-	DUF1833 domain-containing protein	A0A0B5A6T7	Achromobacter_phage	1.2e-47	56.5
WP_010926426.1|3629197_3629557_-	hypothetical protein	NA	NA	NA	NA
WP_010926425.1|3629566_3632167_-|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	4.5e-103	36.4
WP_003813411.1|3632194_3632485_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	6.3e-14	41.9
WP_010926424.1|3632502_3632832_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	3.8e-15	43.1
WP_003813414.1|3632844_3633360_-	hypothetical protein	A0A1S5R1H0	Pseudomonas_phage	1.2e-23	38.3
WP_157835999.1|3633358_3633514_+	hypothetical protein	NA	NA	NA	NA
WP_004566286.1|3633614_3634115_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	7.5e-31	45.1
WP_004566287.1|3634122_3634545_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_004566288.1|3634541_3634940_-	HK97 gp10 family phage protein	S4SIM9	Salmonella_phage	2.1e-23	44.9
WP_004566289.1|3634936_3635332_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
WP_004566290.1|3635331_3635532_-	hypothetical protein	NA	NA	NA	NA
WP_004566291.1|3635533_3636016_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	2.6e-12	38.5
WP_003813425.1|3636078_3636336_-	hypothetical protein	NA	NA	NA	NA
WP_004566292.1|3636345_3637314_-	hypothetical protein	R9TJ64	Synechococcus_phage	6.6e-124	71.7
WP_004566293.1|3637340_3637943_-	hypothetical protein	R9TF81	Synechococcus_phage	5.5e-28	44.3
WP_033448595.1|3638066_3638309_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	1.9e-16	51.9
WP_004566294.1|3638314_3639367_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	6.3e-96	50.8
WP_004566295.1|3639395_3640814_-	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	1.2e-97	41.5
WP_004566296.1|3640816_3642094_-|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	9.2e-150	64.2
WP_004566297.1|3642080_3642452_-	DNA-binding protein	A0A090DCM3	Clostridium_phage	6.2e-06	36.7
WP_004566298.1|3642770_3643211_-	hypothetical protein	NA	NA	NA	NA
WP_003813441.1|3643207_3643411_-	hypothetical protein	NA	NA	NA	NA
WP_004566300.1|3643407_3644091_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	4.9e-33	50.0
WP_004566301.1|3644087_3645029_-	AAA family ATPase	A0A0U4B0G9	Pseudomonas_phage	8.5e-52	36.5
WP_004566302.1|3645025_3645397_-	hypothetical protein	NA	NA	NA	NA
WP_004566303.1|3645393_3646218_-	hypothetical protein	R9TJW3	Synechococcus_phage	1.9e-07	45.3
WP_004566304.1|3646217_3646631_-	DUF1364 family protein	A4JX58	Burkholderia_virus	8.1e-15	39.1