CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	8 crisprs	cas3,DEDDh,DinG,csa3,WYL	6	1	12	1
NZ_CP029628	Staphylococcus aureus strain MOK042 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029627_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_1

782268-782350

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_1

>merge|NZ_CP029627|1|782268-782350|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>NZ_CP029627|1|1|782268-782350|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000589260.1\|777499_778477_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP029627.1\|WP_000525103.1\|773601_775485_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP029627.1\|WP_000983677.1\|775496_777278_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP029627.1\|WP_000499195.1\|792086_792242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000022321.1\|769913_770918_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_CP029627.1\|WP_000663025.1\|780223_781282_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_CP029627.1\|WP_000180991.1\|778469_779984_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_CP029627.1\|WP_000193751.1\|783984_785490_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP029627.1\|WP_000562498.1\|790601_791573_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NZ_CP029627.1\|WP_000855505.1\|788378_790484_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NZ_CP029627.1\|WP_000098281.1\|771391_773332_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	unknown	unknown	gnl\|CDD\|224287
NZ_CP029627.1\|WP_031929878.1\|792280_793252_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_CP029627.1\|WP_001068497.1\|786350_787217_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP029627.1\|WP_000692521.1\|788017_788416_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|224694
NZ_CP029627.1\|WP_000930014.1\|785830_786331_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
NZ_CP029627.1\|WP_001790169.1\|768925_769132_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000429006.1\|782798_783716_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP029627.1\|WP_031797439.1\|783805_783907_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000197275.1\|781576_782119_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NZ_CP029627.1\|WP_110166309.1\|769219_769930_+\|allophanate-hydrolase-subunit-1	unknown	unknown	gnl\|CDD\|224960

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000589260.1\|777499_778477_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
NZ_CP029627.1\|WP_000525103.1\|773601_775485_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP029627.1\|WP_000983677.1\|775496_777278_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029627.1\|WP_000022321.1\|769913_770918_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.65343e-143
NZ_CP029627.1\|WP_000663025.1\|780223_781282_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP029627.1\|WP_000180991.1\|778469_779984_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
NZ_CP029627.1\|WP_000562498.1\|790601_791573_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
NZ_CP029627.1\|WP_000855505.1\|788378_790484_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_CP029627.1\|WP_000098281.1\|771391_773332_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NZ_CP029627.1\|WP_031929878.1\|792280_793252_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.0021e-150
NZ_CP029627.1\|WP_001068497.1\|786350_787217_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
NZ_CP029627.1\|WP_000692521.1\|788017_788416_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
NZ_CP029627.1\|WP_000930014.1\|785830_786331_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
NZ_CP029627.1\|WP_000429006.1\|782798_783716_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
NZ_CP029627.1\|WP_000193751.1\|783984_785490_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
NZ_CP029627.1\|WP_000197275.1\|781576_782119_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.69885e-107
NZ_CP029627.1\|WP_110166309.1\|769219_769930_+\|allophanate-hydrolase-subunit-1	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	2.38898e-93

>NZ_CP029627.1|WP_000197275.1|781576_782119_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDVVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>NZ_CP029627.1|WP_000663025.1|780223_781282_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPLHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>NZ_CP029627.1|WP_000180991.1|778469_779984_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NZ_CP029627.1|WP_000589260.1|777499_778477_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>NZ_CP029627.1|WP_000983677.1|775496_777278_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>NZ_CP029627.1|WP_000525103.1|773601_775485_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MGMEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQTVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>NZ_CP029627.1|WP_000098281.1|771391_773332_+|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKINGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRTGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>NZ_CP029627.1|WP_000022321.1|769913_770918_+|biotin-dependent-carboxyltransferase-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRIGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>NZ_CP029627.1|WP_110166309.1|769219_769930_+|allophanate-hydrolase-subunit-1
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVHDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>NZ_CP029627.1|WP_001790169.1|768925_769132_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>NZ_CP029627.1|WP_000429006.1|782798_783716_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NZ_CP029627.1|WP_031797439.1|783805_783907_+|hypothetical-protein
MVITDIDVYRVGRENIVIAVYIEHIKLLFILIS
>NZ_CP029627.1|WP_000193751.1|783984_785490_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>NZ_CP029627.1|WP_000930014.1|785830_786331_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>NZ_CP029627.1|WP_001068497.1|786350_787217_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>NZ_CP029627.1|WP_000692521.1|788017_788416_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>NZ_CP029627.1|WP_000855505.1|788378_790484_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>NZ_CP029627.1|WP_000562498.1|790601_791573_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>NZ_CP029627.1|WP_000499195.1|792086_792242_+|hypothetical-protein
MFYFTLSKQNTHSEKLNFSLIANINKIDTKLFERLLKLWSKNATINEKYYQ
>NZ_CP029627.1|WP_031929878.1|792280_793252_+|ABC-transporter-permease
MKYLLKGNILLLLLILLAIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ

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Crispr_ID: NZ_CP029627_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_2

828785-828867

Unclear

Consensus_repeat	Method
CCAACTTGCATTGTCTGTAGAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_2

>merge|NZ_CP029627|2|828785-828867|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATT

>NZ_CP029627|2|2|828785-828867|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATT	CTTTTCGAAATTCTCTGTGTTGGGGCCCACACC
CCAACTTGCATTGTCTGTAGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_001074757.1\|838646_839837_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP029627.1\|WP_000006551.1\|831146_832091_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP029627.1\|WP_000958224.1\|823647_824580_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP029627.1\|WP_001224793.1\|825432_825918_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP029627.1\|WP_000538141.1\|817036_817687_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_CP029627.1\|WP_000369722.1\|829132_830044_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP029627.1\|WP_000229236.1\|818188_820174_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP029627.1\|WP_000513312.1\|824585_825425_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP029627.1\|WP_001049165.1\|832663_833251_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP029627.1\|WP_000134963.1\|827431_828367_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP029627.1\|WP_000279414.1\|837497_838508_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP029627.1\|WP_001260101.1\|839958_840720_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP029627.1\|WP_001248939.1\|830040_831036_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP029627.1\|WP_000654030.1\|836431_837445_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP029627.1\|WP_000662681.1\|820181_823028_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP029627.1\|WP_110166312.1\|833493_834396_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP029627.1\|WP_000057552.1\|825925_827365_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP029627.1\|WP_000749383.1\|816023_816863_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029627.1\|WP_000638419.1\|817683_817920_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP029627.1\|WP_000070831.1\|835098_835728_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_001074757.1\|838646_839837_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP029627.1\|WP_000006551.1\|831146_832091_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NZ_CP029627.1\|WP_000958224.1\|823647_824580_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP029627.1\|WP_001224793.1\|825432_825918_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
NZ_CP029627.1\|WP_000538141.1\|817036_817687_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NZ_CP029627.1\|WP_000369722.1\|829132_830044_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
NZ_CP029627.1\|WP_000229236.1\|818188_820174_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP029627.1\|WP_000513312.1\|824585_825425_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.82832e-120
NZ_CP029627.1\|WP_001049165.1\|832663_833251_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP029627.1\|WP_000134963.1\|827431_828367_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP029627.1\|WP_000279414.1\|837497_838508_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP029627.1\|WP_001260101.1\|839958_840720_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.48635e-146
NZ_CP029627.1\|WP_001248939.1\|830040_831036_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NZ_CP029627.1\|WP_000654030.1\|836431_837445_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
NZ_CP029627.1\|WP_000662681.1\|820181_823028_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP029627.1\|WP_110166312.1\|833493_834396_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.23844e-154
NZ_CP029627.1\|WP_000057552.1\|825925_827365_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.98898e-05
NZ_CP029627.1\|WP_000749383.1\|816023_816863_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
NZ_CP029627.1\|WP_000638419.1\|817683_817920_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP029627.1\|WP_000070831.1\|835098_835728_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05

>NZ_CP029627.1|WP_000134963.1|827431_828367_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP029627.1|WP_000057552.1|825925_827365_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPVDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP029627.1|WP_001224793.1|825432_825918_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP029627.1|WP_000513312.1|824585_825425_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEKLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>NZ_CP029627.1|WP_000958224.1|823647_824580_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP029627.1|WP_000662681.1|820181_823028_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_CP029627.1|WP_000229236.1|818188_820174_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP029627.1|WP_000638419.1|817683_817920_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP029627.1|WP_000538141.1|817036_817687_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_CP029627.1|WP_000749383.1|816023_816863_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP029627.1|WP_000369722.1|829132_830044_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP029627.1|WP_001248939.1|830040_831036_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP029627.1|WP_000006551.1|831146_832091_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP029627.1|WP_001049165.1|832663_833251_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP029627.1|WP_110166312.1|833493_834396_-|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVISRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>NZ_CP029627.1|WP_000070831.1|835098_835728_+|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>NZ_CP029627.1|WP_000654030.1|836431_837445_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>NZ_CP029627.1|WP_000279414.1|837497_838508_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>NZ_CP029627.1|WP_001074757.1|838646_839837_+|phosphoglycerate-kinase
MAKKIVSDLNLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>NZ_CP029627.1|WP_001260101.1|839958_840720_+|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTVVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSENQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK

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Crispr_ID: NZ_CP029627_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_3

887236-887317

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_3

>merge|NZ_CP029627|3|887236-887317|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>NZ_CP029627|3|3|887236-887317|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000732326.1\|890753_891575_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP029627.1\|WP_001183858.1\|892356_893208_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP029627.1\|WP_001190695.1\|884716_885037_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP029627.1\|WP_000290490.1\|885694_886075_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP029627.1\|WP_001006453.1\|895808_897059_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP029627.1\|WP_110166315.1\|894395_895703_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP029627.1\|WP_000520233.1\|890040_890736_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP029627.1\|WP_000150013.1\|883228_883945_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_CP029627.1\|WP_000422908.1\|884027_884567_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP029627.1\|WP_110166314.1\|891928_892123_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP029627.1\|WP_000168845.1\|893535_894297_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP029627.1\|WP_001140697.1\|880339_880921_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP029627.1\|WP_000589549.1\|885180_885537_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP029627.1\|WP_000932212.1\|886253_887132_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
NZ_CP029627.1\|WP_000255553.1\|880993_881611_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP029627.1\|WP_000974460.1\|882658_883081_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP029627.1\|WP_001065801.1\|888476_888773_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP029627.1\|WP_001018962.1\|888097_888484_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_CP029627.1\|WP_000571218.1\|889022_890048_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP029627.1\|WP_000569887.1\|881765_882260_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000732326.1\|890753_891575_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
NZ_CP029627.1\|WP_001183858.1\|892356_893208_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
NZ_CP029627.1\|WP_001190695.1\|884716_885037_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
NZ_CP029627.1\|WP_000290490.1\|885694_886075_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
NZ_CP029627.1\|WP_001006453.1\|895808_897059_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP029627.1\|WP_110166315.1\|894395_895703_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.25545e-135
NZ_CP029627.1\|WP_000520233.1\|890040_890736_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_CP029627.1\|WP_000150013.1\|883228_883945_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
NZ_CP029627.1\|WP_000422908.1\|884027_884567_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
NZ_CP029627.1\|WP_110166314.1\|891928_892123_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	2.06938e-06
NZ_CP029627.1\|WP_000168845.1\|893535_894297_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
NZ_CP029627.1\|WP_001140697.1\|880339_880921_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.29633e-48
NZ_CP029627.1\|WP_000589549.1\|885180_885537_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_CP029627.1\|WP_000932212.1\|886253_887132_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
NZ_CP029627.1\|WP_000255553.1\|880993_881611_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
NZ_CP029627.1\|WP_000974460.1\|882658_883081_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
NZ_CP029627.1\|WP_001065801.1\|888476_888773_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
NZ_CP029627.1\|WP_001018962.1\|888097_888484_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
NZ_CP029627.1\|WP_000571218.1\|889022_890048_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
NZ_CP029627.1\|WP_000569887.1\|881765_882260_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	3.90374e-46

>NZ_CP029627.1|WP_000932212.1|886253_887132_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_CP029627.1|WP_000290490.1|885694_886075_+|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>NZ_CP029627.1|WP_000589549.1|885180_885537_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_CP029627.1|WP_001190695.1|884716_885037_-|thioredoxin-family-protein
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_CP029627.1|WP_000422908.1|884027_884567_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_CP029627.1|WP_000150013.1|883228_883945_+|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>NZ_CP029627.1|WP_000974460.1|882658_883081_-|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NZ_CP029627.1|WP_000569887.1|881765_882260_-|GNAT-family-N-acetyltransferase
MIEIKTLTNNNFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_CP029627.1|WP_000255553.1|880993_881611_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF
>NZ_CP029627.1|WP_001140697.1|880339_880921_+|histidine-phosphatase-family-protein
MAKTLYLMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGLFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEERIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL
>NZ_CP029627.1|WP_001018962.1|888097_888484_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>NZ_CP029627.1|WP_001065801.1|888476_888773_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>NZ_CP029627.1|WP_000571218.1|889022_890048_+|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>NZ_CP029627.1|WP_000520233.1|890040_890736_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_CP029627.1|WP_000732326.1|890753_891575_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_CP029627.1|WP_110166314.1|891928_892123_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKSNKGK
>NZ_CP029627.1|WP_001183858.1|892356_893208_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_CP029627.1|WP_000168845.1|893535_894297_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_CP029627.1|WP_110166315.1|894395_895703_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDDVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLIGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_CP029627.1|WP_001006453.1|895808_897059_+|cysteine-desulfurase
MNEVAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029627_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_4

1154535-1154721

Orphan

Consensus_repeat	Method
GGCGGGGCCCCAACATAGA	CRT

3 spacers

The CRISPR arrays of NZ_CP029627_4

>merge|NZ_CP029627|4|1154535-1154721|CRT
GGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGA

>NZ_CP029627|4|1|1154535-1154721|CRT
GGCGGGGCCCCAACATAGA	GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG
GGGTGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT
GGCGGGGCCCCAACATAGT	GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000765708.1\|1154051_1154198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000432077.1\|1159870_1161427_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP029627.1\|WP_000793612.1\|1157742_1158744_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP029627.1\|WP_000584398.1\|1148487_1148994_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000791581.1\|1149252_1149750_+\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NZ_CP029627.1\|WP_001802045.1\|1154154_1154379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000041896.1\|1154935_1155652_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP029627.1\|WP_000231632.1\|1151709_1151943_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_001063559.1\|1155759_1156485_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP029627.1\|WP_000739523.1\|1156579_1157305_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP029627.1\|WP_000149429.1\|1161734_1161962_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_001074342.1\|1158766_1159699_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP029627.1\|WP_000669528.1\|1149900_1150251_+\|complement-inhibitor-SCIN-family-protein	unknown	unknown	gnl\|CDD\|371594
NZ_CP029627.1\|WP_001239285.1\|1162266_1163214_-\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP029627.1\|WP_000398672.1\|1164562_1164697_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP029627.1\|WP_000739208.1\|1146716_1147046_+\|complement-convertase-inhibitor-Ecb	unknown	unknown	gnl\|CDD\|289007
NZ_CP029627.1\|WP_001245802.1\|1163462_1163651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP029627.1\|WP_000857485.1\|1152419_1153379_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP029627.1\|WP_000739570.1\|1147415_1147817_-\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NZ_CP029627.1\|WP_001032816.1\|1150902_1151088_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000432077.1\|1159870_1161427_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP029627.1\|WP_000793612.1\|1157742_1158744_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NZ_CP029627.1\|WP_000791581.1\|1149252_1149750_+\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.84801e-27
NZ_CP029627.1\|WP_001239285.1\|1162266_1163214_-\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.44089e-84
NZ_CP029627.1\|WP_000041896.1\|1154935_1155652_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
NZ_CP029627.1\|WP_001063559.1\|1155759_1156485_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
NZ_CP029627.1\|WP_000739523.1\|1156579_1157305_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
NZ_CP029627.1\|WP_001074342.1\|1158766_1159699_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NZ_CP029627.1\|WP_000669528.1\|1149900_1150251_+\|complement-inhibitor-SCIN-family-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	8.46865e-41
NZ_CP029627.1\|WP_000739208.1\|1146716_1147046_+\|complement-convertase-inhibitor-Ecb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.51827e-21
NZ_CP029627.1\|WP_001245802.1\|1163462_1163651_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NZ_CP029627.1\|WP_000857485.1\|1152419_1153379_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.4958e-141
NZ_CP029627.1\|WP_000739570.1\|1147415_1147817_-\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	5.2726e-76
NZ_CP029627.1\|WP_000398672.1\|1164562_1164697_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13

>NZ_CP029627.1|WP_001802045.1|1154154_1154379_+|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP029627.1|WP_000765708.1|1154051_1154198_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP029627.1|WP_000857485.1|1152419_1153379_-|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>NZ_CP029627.1|WP_000231632.1|1151709_1151943_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NZ_CP029627.1|WP_001032816.1|1150902_1151088_-|hypothetical-protein
MNKHINKKASKLLEDYKKVQQRKSEETDKGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP029627.1|WP_000669528.1|1149900_1150251_+|complement-inhibitor-SCIN-family-protein
MKFKKYILTGTLALLLSSTAIATIEGNKADASSKKDYIIQSEFHDKRIAEELKSLLDQSYVNDLAAGSLNPYYKRTIMMNQYRAKAALKSNNFAKMAEAKVALENIYKEIDEIINR
>NZ_CP029627.1|WP_000791581.1|1149252_1149750_+|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>NZ_CP029627.1|WP_000584398.1|1148487_1148994_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP029627.1|WP_000739570.1|1147415_1147817_-|formyl-peptide-receptor-like-1-inhibitory-protein
MKKNITKTIIASTVIAAGLSTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>NZ_CP029627.1|WP_000739208.1|1146716_1147046_+|complement-convertase-inhibitor-Ecb
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNAETVKKYNEYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>NZ_CP029627.1|WP_000041896.1|1154935_1155652_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP029627.1|WP_001063559.1|1155759_1156485_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP029627.1|WP_000739523.1|1156579_1157305_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>NZ_CP029627.1|WP_000793612.1|1157742_1158744_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDNIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP029627.1|WP_001074342.1|1158766_1159699_+|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP029627.1|WP_000432077.1|1159870_1161427_+|YfcC-family-protein
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>NZ_CP029627.1|WP_000149429.1|1161734_1161962_+|hypothetical-protein
MTHLTKVLVTLTGICVVLLFSKYFVAYANMVFDWNLRWYMLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NZ_CP029627.1|WP_001239285.1|1162266_1163214_-|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>NZ_CP029627.1|WP_001245802.1|1163462_1163651_+|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NZ_CP029627.1|WP_000398672.1|1164562_1164697_+|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: NZ_CP029627_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_5

1829695-1829781

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_5

>merge|NZ_CP029627|5|1829695-1829781|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>NZ_CP029627|5|4|1829695-1829781|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000883648.1\|1821585_1822530_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP029627.1\|WP_000277601.1\|1831374_1831788_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP029627.1\|WP_000626076.1\|1828478_1829420_-\|pApA-hydrolase-Pde2	unknown	unknown	gnl\|CDD\|223691
NZ_CP029627.1\|WP_000161674.1\|1832956_1834012_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP029627.1\|WP_000840584.1\|1837622_1838570_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP029627.1\|WP_001836688.1\|1825260_1828458_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP029627.1\|WP_000040063.1\|1836332_1837535_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP029627.1\|WP_000777190.1\|1832092_1832782_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP029627.1\|WP_000136253.1\|1838692_1839187_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP029627.1\|WP_000123164.1\|1812096_1813365_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP029627.1\|WP_000829167.1\|1813413_1814535_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_CP029627.1\|WP_000689998.1\|1834327_1835446_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP029627.1\|WP_000717561.1\|1820348_1821317_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP029627.1\|WP_000058389.1\|1823581_1824811_-\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_CP029627.1\|WP_000471571.1\|1822529_1823387_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP029627.1\|WP_001789984.1\|1834105_1834204_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000160433.1\|1829871_1831170_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594
NZ_CP029627.1\|WP_000818525.1\|1814882_1816244_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP029627.1\|WP_001232648.1\|1818569_1820327_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_CP029627.1\|WP_000634175.1\|1835586_1836087_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000883648.1\|1821585_1822530_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP029627.1\|WP_000277601.1\|1831374_1831788_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	7.63781e-19
NZ_CP029627.1\|WP_000626076.1\|1828478_1829420_-\|pApA-hydrolase-Pde2	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.09048e-98
NZ_CP029627.1\|WP_000161674.1\|1832956_1834012_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	9.25455e-126
NZ_CP029627.1\|WP_000840584.1\|1837622_1838570_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.04193e-56
NZ_CP029627.1\|WP_001836688.1\|1825260_1828458_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP029627.1\|WP_000040063.1\|1836332_1837535_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP029627.1\|WP_000777190.1\|1832092_1832782_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.10209e-133
NZ_CP029627.1\|WP_000136253.1\|1838692_1839187_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	8.69777e-99
NZ_CP029627.1\|WP_000123164.1\|1812096_1813365_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP029627.1\|WP_000829167.1\|1813413_1814535_-\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_CP029627.1\|WP_000689998.1\|1834327_1835446_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP029627.1\|WP_000717561.1\|1820348_1821317_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP029627.1\|WP_000058389.1\|1823581_1824811_-\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP029627.1\|WP_000471571.1\|1822529_1823387_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP029627.1\|WP_000160433.1\|1829871_1831170_-\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
NZ_CP029627.1\|WP_000818525.1\|1814882_1816244_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP029627.1\|WP_001232648.1\|1818569_1820327_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_CP029627.1\|WP_000634175.1\|1835586_1836087_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36

>NZ_CP029627.1|WP_000626076.1|1828478_1829420_-|pApA-hydrolase-Pde2
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>NZ_CP029627.1|WP_001836688.1|1825260_1828458_-|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEVNQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKKTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>NZ_CP029627.1|WP_000058389.1|1823581_1824811_-|NAD-dependent-malic-enzyme-4
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>NZ_CP029627.1|WP_000471571.1|1822529_1823387_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>NZ_CP029627.1|WP_000883648.1|1821585_1822530_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>NZ_CP029627.1|WP_000717561.1|1820348_1821317_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>NZ_CP029627.1|WP_001232648.1|1818569_1820327_-|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>NZ_CP029627.1|WP_000818525.1|1814882_1816244_+|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>NZ_CP029627.1|WP_000829167.1|1813413_1814535_-|citrate-synthase
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>NZ_CP029627.1|WP_000123164.1|1812096_1813365_-|NADP-dependent-isocitrate-dehydrogenase
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVEKEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK
>NZ_CP029627.1|WP_000160433.1|1829871_1831170_-|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNAMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>NZ_CP029627.1|WP_000277601.1|1831374_1831788_+|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERNKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>NZ_CP029627.1|WP_000777190.1|1832092_1832782_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKVNFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>NZ_CP029627.1|WP_000161674.1|1832956_1834012_+|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIILEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>NZ_CP029627.1|WP_001789984.1|1834105_1834204_-|hypothetical-protein
MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLG
>NZ_CP029627.1|WP_000689998.1|1834327_1835446_-|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>NZ_CP029627.1|WP_000634175.1|1835586_1836087_+|universal-stress-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>NZ_CP029627.1|WP_000040063.1|1836332_1837535_-|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>NZ_CP029627.1|WP_000840584.1|1837622_1838570_-|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEIDIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINVLKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>NZ_CP029627.1|WP_000136253.1|1838692_1839187_-|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI

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Crispr_ID: NZ_CP029627_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_6

2002172-2002299

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_6

>merge|NZ_CP029627|6|2002172-2002299|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>NZ_CP029627|6|5|2002172-2002299|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000251253.1\|2017215_2017758_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP029627.1\|WP_000597230.1\|2015188_2016925_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	unknown	unknown	gnl\|CDD\|224055
NZ_CP029627.1\|WP_000031108.1\|1993802_1993955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_110166372.1\|2019248_2020226_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP029627.1\|WP_000886468.1\|2020486_2021323_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224596
NZ_CP029627.1\|WP_001808146.1\|2000469_2001789_+\|ISL3-like-element-IS1181-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP029627.1\|WP_031770214.1\|1995212_1996340_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP029627.1\|WP_000901023.1\|1992863_1993259_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_063644569.1\|1990009_1990831_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP029627.1\|WP_000063551.1\|1998924_1999986_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP029627.1\|WP_000939521.1\|2011785_2012241_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP029627.1\|WP_063644601.1\|2018059_2019097_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP029627.1\|WP_001251224.1\|1993979_1994579_-\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440
NZ_CP029627.1\|WP_001236371.1\|2013903_2014998_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP029627.1\|WP_000869449.1\|2010829_2011780_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
NZ_CP029627.1\|WP_000590809.1\|1996493_1997216_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP029627.1\|WP_000116229.1\|1991282_1992668_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP029627.1\|WP_000110011.1\|2010286_2010733_-\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_CP029627.1\|WP_110166370.1\|1994737_1995208_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP029627.1\|WP_001011598.1\|2012321_2013611_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000251253.1\|2017215_2017758_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.12131e-126
NZ_CP029627.1\|WP_110166372.1\|2019248_2020226_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.74981e-40
NZ_CP029627.1\|WP_000597230.1\|2015188_2016925_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP029627.1\|WP_000886468.1\|2020486_2021323_-\|membrane-protein	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000164936
NZ_CP029627.1\|WP_063644569.1\|1990009_1990831_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.53501e-78
NZ_CP029627.1\|WP_031770214.1\|1995212_1996340_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.91597e-178
NZ_CP029627.1\|WP_001808146.1\|2000469_2001789_+\|ISL3-like-element-IS1181-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.72663e-114
NZ_CP029627.1\|WP_000063551.1\|1998924_1999986_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.65132e-122
NZ_CP029627.1\|WP_110166370.1\|1994737_1995208_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	3.58189e-87
NZ_CP029627.1\|WP_063644601.1\|2018059_2019097_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.88389e-156
NZ_CP029627.1\|WP_001251224.1\|1993979_1994579_-\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	1.49007e-10
NZ_CP029627.1\|WP_001236371.1\|2013903_2014998_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.5476e-86
NZ_CP029627.1\|WP_000869449.1\|2010829_2011780_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.25267e-136
NZ_CP029627.1\|WP_000590809.1\|1996493_1997216_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.70748e-153
NZ_CP029627.1\|WP_000116229.1\|1991282_1992668_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP029627.1\|WP_000110011.1\|2010286_2010733_-\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
NZ_CP029627.1\|WP_000939521.1\|2011785_2012241_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.44283e-68
NZ_CP029627.1\|WP_001011598.1\|2012321_2013611_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0

>NZ_CP029627.1|WP_001808146.1|2000469_2001789_+|ISL3-like-element-IS1181-family-transposase
MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINRLNSVSKKSVSKGVWKAVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
>NZ_CP029627.1|WP_000063551.1|1998924_1999986_-|PTS-transporter-subunit-IIC
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>NZ_CP029627.1|WP_000590809.1|1996493_1997216_-|amino-acid-ABC-transporter-ATP-binding-protein
MIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>NZ_CP029627.1|WP_031770214.1|1995212_1996340_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSIVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>NZ_CP029627.1|WP_110166370.1|1994737_1995208_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALSQQDFPGLN
>NZ_CP029627.1|WP_001251224.1|1993979_1994579_-|glucosamine-6-phosphate-isomerase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>NZ_CP029627.1|WP_000031108.1|1993802_1993955_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>NZ_CP029627.1|WP_000901023.1|1992863_1993259_-|hypothetical-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>NZ_CP029627.1|WP_000116229.1|1991282_1992668_-|class-II-fumarate-hydratase
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCEIMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>NZ_CP029627.1|WP_063644569.1|1990009_1990831_+|RluA-family-pseudouridine-synthase
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISGSLDD
>NZ_CP029627.1|WP_000110011.1|2010286_2010733_-|peroxide-responsive-transcriptional-repressor-PerR
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>NZ_CP029627.1|WP_000869449.1|2010829_2011780_-|2-hydroxyacid-dehydrogenase
MKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDILVGYDGGINEAFLQRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEAVLIEVLKSKVIRHAYLDVFENEPLKPNHELYELENVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>NZ_CP029627.1|WP_000939521.1|2011785_2012241_-|thioredoxin-dependent-thiol-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>NZ_CP029627.1|WP_001011598.1|2012321_2013611_+|glutamate-1-semialdehyde-2,1-aminomutase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>NZ_CP029627.1|WP_001236371.1|2013903_2014998_+|aromatic-acid-exporter-family-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>NZ_CP029627.1|WP_000597230.1|2015188_2016925_-|SAV1866-family-putative-multidrug-efflux-ABC-transporter
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVELTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL
>NZ_CP029627.1|WP_000251253.1|2017215_2017758_-|DUF402-domain-containing-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY
>NZ_CP029627.1|WP_063644601.1|2018059_2019097_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSCEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGAINIETLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>NZ_CP029627.1|WP_110166372.1|2019248_2020226_+|metal-dependent-hydrolase
MDTATHIAIGVVLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVIGLHPFAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQTLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTNDNVIDHSYIGWVFTEDKLQRKLYAK
>NZ_CP029627.1|WP_000886468.1|2020486_2021323_-|membrane-protein
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRIIVLIVFAVVMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGVCVLCFLLLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSNDSTDEADTSS

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Crispr_ID: NZ_CP029627_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_7

2254724-2254880

Orphan

Consensus_repeat	Method
CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	PILER-CR

2 spacers

csa3

The CRISPR arrays of NZ_CP029627_7

>merge|NZ_CP029627|7|2254724-2254880|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

>NZ_CP029627|7|1|2254724-2254880|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGC	GTAGCATCCAACTGTATTCCTCTAT
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTA	GCGCAGGCGCTCCTAC
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_001292149.1\|2266705_2267140_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP029627.1\|WP_000495669.1\|2253619_2254711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000220900.1\|2254976_2255069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000123402.1\|2247552_2248926_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP029627.1\|WP_063644714.1\|2264561_2266694_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP029627.1\|WP_031797709.1\|2255635_2255713_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_063644716.1\|2262988_2264527_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP029627.1\|WP_000003757.1\|2252051_2252372_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP029627.1\|WP_000160304.1\|2245208_2245919_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP029627.1\|WP_001123303.1\|2246682_2247096_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP029627.1\|WP_000808817.1\|2249599_2249830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000908182.1\|2259488_2260271_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP029627.1\|WP_000019744.1\|2252373_2253354_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP029627.1\|WP_000648725.1\|2267139_2268246_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP029627.1\|WP_000370945.1\|2258563_2259421_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP029627.1\|WP_000070866.1\|2246039_2246483_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP029627.1\|WP_063644718.1\|2260502_2262308_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP029627.1\|WP_001127960.1\|2249860_2250799_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP029627.1\|WP_001024095.1\|2251234_2251900_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP029627.1\|WP_000115560.1\|2256418_2257555_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_001292149.1\|2266705_2267140_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP029627.1\|WP_001123303.1\|2246682_2247096_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NZ_CP029627.1\|WP_000123402.1\|2247552_2248926_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP029627.1\|WP_000908182.1\|2259488_2260271_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
NZ_CP029627.1\|WP_063644716.1\|2262988_2264527_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP029627.1\|WP_000003757.1\|2252051_2252372_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.31742e-17
NZ_CP029627.1\|WP_000160304.1\|2245208_2245919_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP029627.1\|WP_000648725.1\|2267139_2268246_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP029627.1\|WP_063644714.1\|2264561_2266694_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.65257e-67
NZ_CP029627.1\|WP_000019744.1\|2252373_2253354_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
NZ_CP029627.1\|WP_000370945.1\|2258563_2259421_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.28483e-59
NZ_CP029627.1\|WP_000070866.1\|2246039_2246483_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_CP029627.1\|WP_063644718.1\|2260502_2262308_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP029627.1\|WP_001127960.1\|2249860_2250799_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP029627.1\|WP_001024095.1\|2251234_2251900_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
NZ_CP029627.1\|WP_000115560.1\|2256418_2257555_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	4.78584e-06

>NZ_CP029627.1|WP_000495669.1|2253619_2254711_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP029627.1|WP_000019744.1|2252373_2253354_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP029627.1|WP_000003757.1|2252051_2252372_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINKDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP029627.1|WP_001024095.1|2251234_2251900_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>NZ_CP029627.1|WP_001127960.1|2249860_2250799_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP029627.1|WP_000808817.1|2249599_2249830_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP029627.1|WP_000123402.1|2247552_2248926_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP029627.1|WP_001123303.1|2246682_2247096_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP029627.1|WP_000070866.1|2246039_2246483_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP029627.1|WP_000160304.1|2245208_2245919_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_CP029627.1|WP_000220900.1|2254976_2255069_+|hypothetical-protein
MTYGSIIAIVCALFVIFFIPYMEKNNKKKK
>NZ_CP029627.1|WP_031797709.1|2255635_2255713_-|hypothetical-protein
MLLLERSSMSVFEMLIIVLTIIGLV
>NZ_CP029627.1|WP_000115560.1|2256418_2257555_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIFKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKTDVKDYDNARKYSNVYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASDLYERLIYNKNLSNNIIFELFKKDTQDYSDLEEQLIEKFINYVVSYVKKEGWSNTLLELSKMLENGYTIDKEEFKKEDEYLSRYIITDINYLKNLESKIGVAIDSRNGEIHLVLDDDSLDKLIKNQKNDNEV
>NZ_CP029627.1|WP_000370945.1|2258563_2259421_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP029627.1|WP_000908182.1|2259488_2260271_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP029627.1|WP_063644718.1|2260502_2262308_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNISLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP029627.1|WP_063644716.1|2262988_2264527_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFAYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP029627.1|WP_063644714.1|2264561_2266694_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSSYLTVNPLLPDSDISYVAQFLNTKSTFQEMHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKNLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRSKFLERIKKQFI
>NZ_CP029627.1|WP_001292149.1|2266705_2267140_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP029627.1|WP_000648725.1|2267139_2268246_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLTYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: NZ_CP029627_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029627_8

2694654-2694735

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029627_8

>merge|NZ_CP029627|8|2694654-2694735|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>NZ_CP029627|8|6|2694654-2694735|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029627.1\|WP_000651837.1\|2695233_2696055_-\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
NZ_CP029627.1\|WP_000697134.1\|2694205_2694436_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
NZ_CP029627.1\|WP_000448899.1\|2698876_2699707_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP029627.1\|WP_000200684.1\|2691253_2692309_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP029627.1\|WP_000996736.1\|2689179_2689668_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP029627.1\|WP_000836425.1\|2697846_2698857_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP029627.1\|WP_001795496.1\|2685065_2685554_-\|glycosyl-4,4'-diaponeurosporenoate-acyltransferase	unknown	unknown	unknown
NZ_CP029627.1\|WP_000895193.1\|2700840_2702181_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP029627.1\|WP_110166400.1\|2686856_2688668_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP029627.1\|WP_001163740.1\|2702174_2703281_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379355
NZ_CP029627.1\|WP_000616225.1\|2694839_2695217_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226134
NZ_CP029627.1\|WP_001789900.1\|2692718_2693288_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029627.1\|WP_000055859.1\|2696074_2696374_-\|DUF2316-family-protein	unknown	unknown	gnl\|CDD\|226806
NZ_CP029627.1\|WP_000725233.1\|2685728_2686496_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029627.1\|WP_000706519.1\|2699853_2700744_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP029627.1\|WP_000161829.1\|2697055_2697760_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NZ_CP029627.1\|WP_001791985.1\|2692435_2692564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_110166401.1\|2693485_2693986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029627.1\|WP_000751267.1\|2689943_2690645_-\|lytic-transglycosylase-IsaA	unknown	unknown	gnl\|CDD\|381607
NZ_CP029627.1\|WP_001224182.1\|2696505_2697063_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP029627.1\|WP_000651837.1\|2695233_2696055_-\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.56436e-84
NZ_CP029627.1\|WP_000697134.1\|2694205_2694436_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
NZ_CP029627.1\|WP_000200684.1\|2691253_2692309_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
NZ_CP029627.1\|WP_000996736.1\|2689179_2689668_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.6785e-11
NZ_CP029627.1\|WP_000836425.1\|2697846_2698857_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	7.39377e-78
NZ_CP029627.1\|WP_000895193.1\|2700840_2702181_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.90855e-93
NZ_CP029627.1\|WP_110166400.1\|2686856_2688668_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.14304e-84
NZ_CP029627.1\|WP_001163740.1\|2702174_2703281_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	4.45347e-126
NZ_CP029627.1\|WP_000616225.1\|2694839_2695217_-\|VOC-family-protein	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.45544e-58
NZ_CP029627.1\|WP_001789900.1\|2692718_2693288_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.43347e-07
NZ_CP029627.1\|WP_000055859.1\|2696074_2696374_-\|DUF2316-family-protein	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	1.06282e-39
NZ_CP029627.1\|WP_000725233.1\|2685728_2686496_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.0489e-31
NZ_CP029627.1\|WP_000706519.1\|2699853_2700744_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.17569e-76
NZ_CP029627.1\|WP_000161829.1\|2697055_2697760_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.08524e-67
NZ_CP029627.1\|WP_001224182.1\|2696505_2697063_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.50396e-13
NZ_CP029627.1\|WP_000448899.1\|2698876_2699707_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.6811e-18
NZ_CP029627.1\|WP_000751267.1\|2689943_2690645_-\|lytic-transglycosylase-IsaA	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.60255e-06

>NZ_CP029627.1|WP_000697134.1|2694205_2694436_+|DUF896-domain-containing-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>NZ_CP029627.1|WP_110166401.1|2693485_2693986_+|hypothetical-protein
MTSIFVFAYLNNTSGNMLFRQQMICACLLANVRHSSIVCLNNICCIVDMRCLNTKIGGIDVSETDEPQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHIIIARGKKRIDYRLSYNFYTTYYDNVEIKKIDYEYTYAMPIAILIRHTMSFDNAHFFAQLRHPVL
>NZ_CP029627.1|WP_001789900.1|2692718_2693288_+|TetR/AcrR-family-transcriptional-regulator
MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>NZ_CP029627.1|WP_001791985.1|2692435_2692564_-|hypothetical-protein
MDFKNEDKIKVYCNNMFEKLPISLSKNSEFCDILFFIVLSYR
>NZ_CP029627.1|WP_000200684.1|2691253_2692309_-|PTS-transporter-subunit-IIC
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>NZ_CP029627.1|WP_000751267.1|2689943_2690645_-|lytic-transglycosylase-IsaA
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>NZ_CP029627.1|WP_000996736.1|2689179_2689668_-|GNAT-family-N-acetyltransferase
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNNGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
>NZ_CP029627.1|WP_110166400.1|2686856_2688668_-|acetyltransferase
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHFNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTMKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>NZ_CP029627.1|WP_000725233.1|2685728_2686496_-|CHAP-domain-containing-protein
MKKIVTATIATAGLATIAFAGHDAQAVEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>NZ_CP029627.1|WP_001795496.1|2685065_2685554_-|glycosyl-4,4'-diaponeurosporenoate-acyltransferase
MKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>NZ_CP029627.1|WP_000616225.1|2694839_2695217_-|VOC-family-protein
MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGAVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>NZ_CP029627.1|WP_000651837.1|2695233_2696055_-|NmrA/HSCARG-family-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQNYNK
>NZ_CP029627.1|WP_000055859.1|2696074_2696374_-|DUF2316-family-protein
MSLNKEQRRITCEELQAHFEASTLSVQMIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR
>NZ_CP029627.1|WP_001224182.1|2696505_2697063_+|TetR/AcrR-family-transcriptional-regulator
MRKDAIENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>NZ_CP029627.1|WP_000161829.1|2697055_2697760_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
>NZ_CP029627.1|WP_000836425.1|2697846_2698857_+|amidohydrolase
MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTGFTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLGVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>NZ_CP029627.1|WP_000448899.1|2698876_2699707_+|alpha/beta-hydrolase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPIPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDDIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSKFEIRQYTHSDITLDDFTKYSDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNLWG
>NZ_CP029627.1|WP_000706519.1|2699853_2700744_-|GTP-binding-protein
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVPEYLVLIGKGISKEDYQCLEQ
>NZ_CP029627.1|WP_000895193.1|2700840_2702181_-|ferrous-iron-transporter-B
MLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
>NZ_CP029627.1|WP_001163740.1|2702174_2703281_-|NAD(P)-binding-domain-containing-protein
MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTLTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISVDDAFYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029627_2	2.1\|828810\|33\|NZ_CP029627\|CRISPRCasFinder	828810-828842	33	NZ_CP029627.1	2037649-2037681	0	1.0
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	2369929-2369965	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	376857-376893	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	835998-836034	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1052477-1052513	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1437746-1437782	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1709580-1709616	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	2036283-2036319	0	1.0
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	2405764-2405800	0	1.0
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	782256-782292	0	1.0
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	1437804-1437840	0	1.0
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	1525265-1525301	0	1.0
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	2037684-2037720	0	1.0
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	2405820-2405856	0	1.0
NZ_CP029627_8	8.1\|2694678\|34\|NZ_CP029627\|CRISPRCasFinder	2694678-2694711	34	NZ_CP029627.1	1525285-1525318	0	1.0
NZ_CP029627_3	3.1\|887260\|34\|NZ_CP029627\|CRISPRCasFinder	887260-887293	34	NZ_CP029627.1	1525285-1525318	1	0.971
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	2561519-2561555	1	0.973
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	235507-235543	1	0.973
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1525323-1525359	1	0.973
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	2369985-2370021	1	0.973
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	828845-828881	1	0.973
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	1282552-1282588	1	0.973
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	1709522-1709558	1	0.973
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	2644129-2644165	1	0.973
NZ_CP029627_8	8.1\|2694678\|34\|NZ_CP029627\|CRISPRCasFinder	2694678-2694711	34	NZ_CP029627.1	1282535-1282568	1	0.971
NZ_CP029627_3	3.1\|887260\|34\|NZ_CP029627\|CRISPRCasFinder	887260-887293	34	NZ_CP029627.1	1282535-1282568	2	0.941
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	235565-235601	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	823352-823388	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	887297-887333	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	936499-936535	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	1150586-1150622	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	2046975-2047011	2	0.946
NZ_CP029627_4	4.1\|1154554\|37\|NZ_CP029627\|CRT	1154554-1154590	37	NZ_CP029627.1	2694638-2694674	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	40146-40182	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	139377-139413	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	253553-253589	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	887567-887603	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	887623-887659	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	887679-887715	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1154722-1154758	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1282608-1282644	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	1282664-1282700	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	2536195-2536231	2	0.946
NZ_CP029627_4	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	NZ_CP029627.1	2644185-2644221	2	0.946
NZ_CP029627_4	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	NZ_CP029627.1	1829667-1829703	2	0.946
NZ_CP029627_8	8.1\|2694678\|34\|NZ_CP029627\|CRISPRCasFinder	2694678-2694711	34	NZ_CP029627.1	1437787-1437820	2	0.941

1. spacer 2.1|828810|33|NZ_CP029627|CRISPRCasFinder matches to position: 2037649-2037681, mismatch: 0, identity: 1.0

cttttcgaaattctctgtgttggggcccacacc	CRISPR spacer
cttttcgaaattctctgtgttggggcccacacc	Protospacer
*********************************

2. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 2369929-2369965, mismatch: 0, identity: 1.0

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgcaagttg	Protospacer
*************************************

3. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 376857-376893, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

4. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 835998-836034, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

5. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1052477-1052513, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1437746-1437782, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1709580-1709616, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 2036283-2036319, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 2405764-2405800, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

10. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 782256-782292, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 1437804-1437840, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 1525265-1525301, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 2037684-2037720, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 2405820-2405856, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 8.1|2694678|34|NZ_CP029627|CRISPRCasFinder matches to position: 1525285-1525318, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

16. spacer 3.1|887260|34|NZ_CP029627|CRISPRCasFinder matches to position: 1525285-1525318, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

17. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 2561519-2561555, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgtaagttg	Protospacer
******************************.******

18. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 235507-235543, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgtaaagtcagcttacaataatgtgcaagtt	Protospacer
******** ****************************

19. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1525323-1525359, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

20. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 2369985-2370021, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtgcaagtt	Protospacer
****************** ******************

21. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 828845-828881, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggatttccaatttctacagacaatgcaagtt	Protospacer
***********.*************************

22. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 1282552-1282588, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaagttggattcccaatttctacagacaatgcaagtt	Protospacer
***.*********************************

23. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 1709522-1709558, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattgccaatttctacagacaatgcaagtt	Protospacer
*********** *************************

24. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 2644129-2644165, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

25. spacer 8.1|2694678|34|NZ_CP029627|CRISPRCasFinder matches to position: 1282535-1282568, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

26. spacer 3.1|887260|34|NZ_CP029627|CRISPRCasFinder matches to position: 1282535-1282568, mismatch: 2, identity: 0.941

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaacttctctttgttggggcccat	Protospacer
****.********.********************

27. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 235565-235601, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

28. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 823352-823388, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

29. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 887297-887333, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

30. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 936499-936535, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

31. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 1150586-1150622, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

32. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 2046975-2047011, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

33. spacer 4.1|1154554|37|NZ_CP029627|CRT matches to position: 2694638-2694674, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

34. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 40146-40182, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

35. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 139377-139413, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

36. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 253553-253589, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

37. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 887567-887603, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

38. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 887623-887659, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

39. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 887679-887715, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

40. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1154722-1154758, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

41. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1282608-1282644, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

42. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 1282664-1282700, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

43. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 2536195-2536231, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

44. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to position: 2644185-2644221, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agttgacgaaaaatcagcttacaataatgtgcaagtt	Protospacer
**.*********.************************

45. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to position: 1829667-1829703, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggacccccaatttctacagacaatgcaagtt	Protospacer
*********..**************************

46. spacer 8.1|2694678|34|NZ_CP029627|CRISPRCasFinder matches to position: 1437787-1437820, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atggagcccaacaaagagaaattggattcccaat	Protospacer
****. ****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029627_5	5.1\|1829725\|27\|NZ_CP029627\|CRISPRCasFinder	1829725-1829751	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815

1. spacer 5.1|1829725|27|NZ_CP029627|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

311938 : 355542

Staphylococcus_phage(67.74%)

plate,holin,integrase,capsid,terminase,tail,protease,portal,head

attL 311828:311845|attR 356276:356293

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
311828:311845	attL	NA	NA	NA	NA
WP_000264745.1\|311938_313144_-\|integrase	site-specific integrase	Q4ZBP1	Staphylococcus_phage	1.9e-221	99.8
WP_000191466.1\|313269_313884_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_074370993.1\|313880_314027_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.7e-15	93.8
WP_000449655.1\|314116_314512_-	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
WP_000755718.1\|314540_314975_-	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	1.2e-24	100.0
WP_000525000.1\|314992_315454_-	hypothetical protein	A0A2I6PEK4	Staphylococcus_phage	1.3e-85	99.3
WP_000429766.1\|315466_315796_-	helix-turn-helix transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
WP_001115060.1\|315956_316148_+	helix-turn-helix transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
WP_001001356.1\|316231_316408_+	hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	8.8e-27	100.0
WP_001548903.1\|316404_316644_-	hypothetical protein	A0A2I6PE22	Staphylococcus_phage	6.7e-38	100.0
WP_001036299.1\|316690_316906_+	hypothetical protein	A0A2I6PEK7	Staphylococcus_phage	1.0e-32	100.0
WP_001124198.1\|316930_317194_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
WP_001285948.1\|317206_317368_+	DUF1270 domain-containing protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
WP_000174994.1\|317446_317770_+	hypothetical protein	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
WP_000985976.1\|317784_318147_+	hypothetical protein	A0A2I6PF03	Staphylococcus_phage	4.9e-56	100.0
WP_107378073.1\|318143_319310_+	DUF2800 domain-containing protein	A7TWG4	Staphylococcus_phage	7.7e-220	99.2
WP_000647288.1\|319336_319891_+	DUF2815 family protein	M9QRS1	Staphylococcus_phage	1.4e-99	100.0
WP_110166419.1\|319959_321912_+	DNA polymerase	B7T0G8	Staphylococcus_virus	0.0e+00	98.0
WP_001164628.1\|321924_322110_+	DUF3113 family protein	A0A2I6PEM8	Staphylococcus_phage	2.1e-26	98.4
WP_070008564.1\|322109_322511_+	PVL family protein	B7T0H0	Staphylococcus_virus	1.2e-68	100.0
WP_015994745.1\|322510_322768_+	DUF3310 domain-containing protein	B7T0H1	Staphylococcus_virus	7.5e-43	100.0
WP_015994746.1\|322770_322971_+	hypothetical protein	B7T0H2	Staphylococcus_virus	3.7e-29	100.0
WP_015994747.1\|322967_323657_+	N-6 DNA methylase	B7T0H3	Staphylococcus_virus	6.1e-132	100.0
WP_015994748.1\|323670_323877_+	hypothetical protein	B7T0H4	Staphylococcus_virus	7.8e-35	100.0
WP_015994749.1\|323879_324308_+	hypothetical protein	B7T0H5	Staphylococcus_virus	1.0e-73	100.0
WP_000983951.1\|324304_324499_+	hypothetical protein	B7T0H6	Staphylococcus_virus	1.1e-27	100.0
WP_070008563.1\|324495_324780_+	hypothetical protein	A0A059T7K0	Staphylococcus_phage	2.0e-25	94.7
WP_015994751.1\|324772_325021_+	DUF1024 family protein	B7T0H8	Staphylococcus_virus	4.1e-38	100.0
WP_015994752.1\|325013_325574_+	dUTP diphosphatase	B7T0H9	Staphylococcus_virus	1.8e-102	100.0
WP_029265348.1\|325610_325811_+	hypothetical protein	NA	NA	NA	NA
WP_015994753.1\|325810_326014_+	DUF1381 domain-containing protein	B7T0I0	Staphylococcus_virus	3.5e-19	100.0
WP_015994754.1\|326010_326163_+	hypothetical protein	B7T0I1	Staphylococcus_virus	8.9e-20	100.0
WP_000265258.1\|326230_326431_+	DUF1514 family protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_069990205.1\|326482_328930_+	virulence-associated E family protein	B7T0I3	Staphylococcus_virus	0.0e+00	99.9
WP_015978074.1\|329032_329137_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
WP_015978062.1\|329270_329561_+	VRR-NUC domain-containing protein	B7T0I4	Staphylococcus_virus	4.9e-51	100.0
WP_110161655.1\|329541_330909_+	DEAD/DEAH box helicase	B7T0I5	Staphylococcus_virus	3.5e-264	99.6
WP_000513702.1\|330921_331359_+	transcriptional regulator	B7T0I6	Staphylococcus_virus	6.1e-77	100.0
WP_015994756.1\|331515_331830_+	HNH endonuclease	A0A0K1LL59	Staphylococcus_phage	4.2e-56	100.0
WP_000778933.1\|331957_332263_+\|terminase	P27 family phage terminase small subunit	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
WP_110166288.1\|332252_333944_+\|terminase	terminase large subunit	Q9B0E3	Staphylococcus_virus	0.0e+00	99.6
WP_031773897.1\|333948_335187_+\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	1.7e-233	99.5
WP_031883906.1\|335170_335944_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	1.9e-134	97.7
WP_031883907.1\|335955_337119_+\|capsid	phage major capsid protein	Q4ZCT8	Staphylococcus_virus	2.7e-217	99.5
WP_000050977.1\|337187_337466_+\|head,tail	phage gp6-like head-tail connector protein	R4WAL3	Staphylococcus_phage	3.5e-46	100.0
WP_000395499.1\|337477_337810_+	hypothetical protein	A0A2I6PEH8	Staphylococcus_phage	3.1e-57	100.0
WP_110166289.1\|337806_338208_+	hypothetical protein	R4WAN5	Staphylococcus_phage	4.0e-67	99.2
WP_001636966.1\|338208_338604_+	DUF3168 domain-containing protein	R4WAV1	Staphylococcus_phage	4.4e-66	99.2
WP_000807543.1\|338638_339280_+\|tail	tail protein	A0A2I6PE59	Staphylococcus_phage	4.7e-118	97.2
WP_064272832.1\|339371_339827_+	Ig domain-containing protein	Q9B0D4	Staphylococcus_phage	2.0e-75	97.4
WP_000589165.1\|339884_340235_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
WP_000438833.1\|340276_340435_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_110166290.1\|340448_346649_+\|tail	phage tail tape measure protein	Q4ZCL0	Staphylococcus_virus	0.0e+00	98.6
WP_031865253.1\|346648_347473_+\|tail	phage tail family protein	A0A2I6PEE1	Staphylococcus_phage	5.4e-159	100.0
WP_000384462.1\|347481_349065_+\|tail	phage tail protein	Q8SDP1	Staphylococcus_virus	7.1e-309	100.0
WP_000179860.1\|349064_349355_+	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
WP_031906531.1\|349370_351281_+	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	99.8
WP_103213504.1\|351280_352747_+\|plate	phage baseplate upper protein	A0A2I6PES7	Staphylococcus_phage	6.4e-272	99.6
WP_001166599.1\|352746_353136_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
WP_000916020.1\|353128_353293_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_000466784.1\|353338_353638_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_000339146.1\|353773_354076_+\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
WP_000930258.1\|354087_355542_+	N-acetylmuramoyl-L-alanine amidase	A0A0N6WMR3	Staphylococcus_phage	3.0e-290	100.0
356276:356293	attR	NA	NA	NA	NA

DBSCAN-SWA_2

421564 : 433240

Staphylococcus_phage(30.0%)

capsid,integrase

attL 424586:424606|attR 437927:437947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000264071.1\|421564_423031_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
WP_000424963.1\|423055_424597_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
424586:424606	attL	NA	NA	NA	NA
WP_031919586.1\|424690_425827_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.7e-75	42.5
WP_031588064.1\|425910_426297_-	helix-turn-helix transcriptional regulator	U3PIS7	Lactobacillus_phage	3.8e-06	41.2
WP_031588042.1\|426429_426669_+	helix-turn-helix transcriptional regulator	Q38329	Lactococcus_phage	2.5e-08	40.0
WP_000080597.1\|426665_426926_+	hypothetical protein	NA	NA	NA	NA
WP_162852058.1\|426972_427119_+	hypothetical protein	NA	NA	NA	NA
WP_031774950.1\|427111_427336_+	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	7.5e-15	58.8
WP_001103957.1\|427336_427630_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	1.7e-14	46.1
WP_031593609.1\|427720_430093_+	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	3.7e-136	39.3
WP_001082128.1\|430762_431107_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	1.2e-40	64.3
WP_000884055.1\|431331_431538_+	hypothetical protein	NA	NA	NA	NA
WP_031588018.1\|431524_432583_+\|capsid	phage capsid protein	NA	NA	NA	NA
WP_000253083.1\|432748_433240_+	hypothetical protein	A0A2H4JB26	uncultured_Caudovirales_phage	3.0e-24	39.9
437927:437947	attR	NA	NA	NA	NA

DBSCAN-SWA_3

760432 : 768252

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244415.1\|760432_761488_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|761487_762174_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|762148_762622_-	DoxX family protein	NA	NA	NA	NA
WP_001093556.1\|762963_763404_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637687.1\|763683_764268_-	hypothetical protein	NA	NA	NA	NA
WP_110166308.1\|764366_765080_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	8.5e-52	43.1
WP_000941336.1\|765083_765503_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|765504_766173_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604515.1\|766523_767117_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
WP_001217794.1\|767100_768252_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	3.5e-23	36.1

DBSCAN-SWA_4

780223 : 794953

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663025.1\|780223_781282_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.5e-20	27.3
WP_000197275.1\|781576_782119_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429006.1\|782798_783716_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
WP_031797439.1\|783805_783907_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|783984_785490_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|785830_786331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068497.1\|786350_787217_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|788017_788416_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|788378_790484_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|790601_791573_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|792086_792242_+	hypothetical protein	NA	NA	NA	NA
WP_031929878.1\|792280_793252_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.6e-138	78.6
WP_001245577.1\|793238_794195_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616842.1\|794191_794953_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_5

1053691 : 1062164

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861572.1\|1053691_1054174_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
WP_001010410.1\|1054160_1055285_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174053.1\|1055288_1055993_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_000848350.1\|1055992_1056256_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666806.1\|1056257_1056929_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032740.1\|1056921_1059111_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
WP_000483720.1\|1059089_1060574_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
WP_000030811.1\|1060566_1061595_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_000238669.1\|1061597_1062164_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_6

1235821 : 1318478

Staphylococcus_phage(81.94%)

plate,holin,capsid,terminase,tail,protease,tRNA,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861305.1\|1235821_1237213_-	recombinase family protein	A0A059T616	Staphylococcus_phage	2.2e-266	100.0
WP_110166333.1\|1237270_1237774_-	hypothetical protein	A0A059T7N4	Staphylococcus_phage	8.9e-48	99.4
WP_001077670.1\|1237777_1238269_-	hypothetical protein	A0A059T7J5	Staphylococcus_phage	1.3e-83	100.0
WP_000521396.1\|1238289_1238748_-	hypothetical protein	A0A059T660	Staphylococcus_phage	1.8e-84	100.0
WP_000455972.1\|1238769_1239096_-	helix-turn-helix transcriptional regulator	A0A059T5A2	Staphylococcus_phage	7.0e-54	100.0
WP_001114715.1\|1239258_1239468_+	helix-turn-helix transcriptional regulator	A0A059T617	Staphylococcus_phage	4.8e-32	100.0
WP_001157021.1\|1239506_1240220_+	phage repressor protein	A0A059T7N7	Staphylococcus_phage	1.0e-129	99.6
WP_000048121.1\|1240321_1240483_+	DUF1270 family protein	A0A059T7J6	Staphylococcus_phage	1.9e-20	100.0
WP_000291075.1\|1240574_1240835_+	DUF1108 family protein	A0A059T5A3	Staphylococcus_phage	1.2e-43	100.0
WP_000815401.1\|1240844_1241066_+	DUF2483 family protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
WP_110166334.1\|1241058_1241838_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	7.6e-139	97.7
WP_000704707.1\|1241868_1242420_+	hypothetical protein	Q4ZBM4	Staphylococcus_phage	1.7e-100	99.5
WP_001199438.1\|1242432_1243125_+	hypothetical protein	Q8SDW3	Staphylococcus_phage	5.2e-131	99.1
WP_000504991.1\|1243096_1243930_+	phage replisome organizer N-terminal domain-containing protein	A0A0H3U476	Staphylococcus_phage	2.1e-126	100.0
WP_000443353.1\|1243942_1244728_+	ATP-binding protein	A0A0H4J332	Staphylococcus_phage	1.9e-145	100.0
WP_000628837.1\|1244724_1244883_+	hypothetical protein	A0A0H3U301	Staphylococcus_phage	3.4e-22	100.0
WP_001123685.1\|1244895_1245117_+	DUF3269 family protein	A0A0N9BAW8	Staphylococcus_phage	9.9e-36	100.0
WP_000049801.1\|1245127_1245532_+	DUF1064 domain-containing protein	G4KNP2	Staphylococcus_phage	2.1e-68	99.3
WP_001187254.1\|1245536_1245722_+	DUF3113 family protein	Q4ZA46	Staphylococcus_virus	4.1e-27	100.0
WP_070045555.1\|1245722_1246232_+	hypothetical protein	C8CGZ9	Staphylococcus_phage	1.9e-42	91.1
WP_000022736.1\|1246231_1246486_+	DUF3310 domain-containing protein	Q6R831	Staphylococcus_virus	1.3e-42	100.0
WP_060474161.1\|1246485_1246734_+	hypothetical protein	A0A2K9VBX5	Staphylococcus_phage	1.2e-40	100.0
WP_000693989.1\|1246747_1246954_+	hypothetical protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
WP_000695756.1\|1246956_1247361_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	4.2e-72	100.0
WP_000983953.1\|1247357_1247552_+	hypothetical protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
WP_000982706.1\|1247548_1248001_+	hypothetical protein	A0A0E3XBJ3	Staphylococcus_phage	1.4e-81	100.0
WP_110166335.1\|1247997_1248501_+	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	3.7e-86	94.0
WP_110166336.1\|1248692_1248944_+	DUF1024 family protein	A0A2H4PQK1	Staphylococcus_phage	5.4e-38	97.6
WP_000028424.1\|1248933_1249107_+	hypothetical protein	A0A2H4PQJ2	Staphylococcus_phage	1.8e-24	100.0
WP_000454994.1\|1249107_1249389_+	hypothetical protein	A0A2I6PDX3	Staphylococcus_phage	8.5e-48	100.0
WP_000889683.1\|1249389_1249551_+	hypothetical protein	A0A2I6PDW5	Staphylococcus_phage	2.4e-23	100.0
WP_025920701.1\|1249565_1250099_+	dUTP diphosphatase	E0Y3R2	Staphylococcus_virus	1.3e-94	99.4
WP_110166337.1\|1250135_1250330_+	DUF1381 domain-containing protein	A1KX86	Staphylococcus_virus	6.7e-20	96.2
WP_001072795.1\|1250326_1250530_+	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
WP_000608281.1\|1250522_1250759_+	hypothetical protein	A7TWI0	Staphylococcus_phage	1.4e-35	98.7
WP_001568228.1\|1250748_1251138_+	hypothetical protein	M9QX07	Staphylococcus_phage	2.8e-65	100.0
WP_000595257.1\|1251134_1251308_+	transcriptional activator RinB	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
WP_000286968.1\|1251308_1251710_+	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_000594088.1\|1252062_1252557_+\|terminase	terminase small subunit	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
WP_001037586.1\|1252549_1253773_+\|terminase	PBSX family phage terminase large subunit	A0A0H3U2R6	Staphylococcus_phage	7.5e-242	100.0
WP_110166338.1\|1253769_1255194_+\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	5.3e-271	99.2
WP_000609643.1\|1255162_1256113_+\|head	phage head morphogenesis protein	A0A0H3U2Z4	Staphylococcus_phage	9.8e-173	98.1
WP_001019218.1\|1256208_1256793_+	DUF4355 domain-containing protein	M9NRJ1	Staphylococcus_phage	2.9e-74	99.0
WP_000235170.1\|1256809_1257724_+\|capsid	phage major capsid protein	A0A059T7K3	Staphylococcus_phage	1.3e-169	99.3
WP_000002930.1\|1257735_1257879_+	hypothetical protein	A0A059T673	Staphylococcus_phage	7.9e-18	100.0
WP_070008600.1\|1257884_1258235_+\|head,tail	phage head-tail adapter protein	A0A059T5B0	Staphylococcus_phage	6.4e-61	100.0
WP_070045497.1\|1258246_1258582_+\|head	phage head closure protein	A0A059T625	Staphylococcus_phage	8.8e-60	100.0
WP_061736442.1\|1258568_1258976_+	HK97 gp10 family phage protein	A0A059T7Q2	Staphylococcus_phage	2.0e-74	100.0
WP_000270192.1\|1258988_1259414_+	DUF3168 domain-containing protein	Q4ZBQ9	Staphylococcus_phage	5.5e-75	100.0
WP_000057585.1\|1259414_1259972_+	hypothetical protein	A0A059T675	Staphylococcus_phage	4.1e-102	100.0
WP_000134336.1\|1260038_1260551_+	hypothetical protein	A0A059T5B1	Staphylococcus_phage	5.4e-93	100.0
WP_041201307.1\|1260595_1260880_+	hypothetical protein	A0A059T626	Staphylococcus_phage	2.3e-45	98.9
WP_070001870.1\|1260883_1264027_+\|terminase	terminase	A0A059T7Q4	Staphylococcus_phage	0.0e+00	99.4
WP_069993703.1\|1264041_1264983_+\|tail	phage tail family protein	A0A059T7K5	Staphylococcus_phage	5.3e-179	98.7
WP_070019458.1\|1264993_1266880_+\|tail	phage tail protein	A0A059T677	Staphylococcus_phage	0.0e+00	98.1
WP_070001872.1\|1266892_1268791_+	hypothetical protein	Q4ZA90	Staphylococcus_virus	0.0e+00	92.6
WP_110166339.1\|1268790_1270614_+\|plate	phage baseplate upper protein	S4V7L3	Staphylococcus_phage	2.1e-309	96.9
WP_069993680.1\|1270613_1271000_+	DUF2977 domain-containing protein	W5R9M2	Staphylococcus_phage	1.9e-45	83.3
WP_000916018.1\|1270992_1271169_+	XkdX family protein	M9QX31	Staphylococcus_phage	8.8e-19	88.0
WP_000467322.1\|1271208_1271514_+	DUF2951 family protein	A0A059T679	Staphylococcus_phage	5.2e-43	100.0
WP_069993700.1\|1276537_1276975_+\|holin	phage holin	M9QTA6	Staphylococcus_phage	2.6e-72	97.9
WP_069993701.1\|1276955_1278401_+	SH3 domain-containing protein	A0A059T7Q7	Staphylococcus_phage	4.7e-291	97.5
WP_000201922.1\|1278805_1278982_+	hypothetical protein	C8CH39	Staphylococcus_phage	1.2e-23	100.0
WP_000051376.1\|1278978_1279593_+	hypothetical protein	C8CH40	Staphylococcus_phage	1.0e-109	100.0
WP_000268754.1\|1279978_1280254_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_001261991.1\|1280441_1280945_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000687328.1\|1280944_1281682_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000181404.1\|1281784_1282135_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000915236.1\|1282774_1285381_-	lipoteichoic acid-specific glycosyltransferase YfhO	NA	NA	NA	NA
WP_000236722.1\|1285781_1286666_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_000176409.1\|1286649_1287417_+	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	2.5e-25	44.1
WP_001020801.1\|1287525_1288692_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_000110251.1\|1288713_1289622_+	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	3.0e-17	33.2
WP_000931873.1\|1289945_1290818_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_001557331.1\|1290991_1293067_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.7e-105	39.2
WP_000195254.1\|1293222_1294530_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_001015597.1\|1294950_1295847_+	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	3.6e-31	31.5
WP_000072681.1\|1295843_1296389_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_000379054.1\|1296454_1297858_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IDZ7	Erwinia_phage	4.9e-27	25.6
WP_000055337.1\|1297882_1298656_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_001790530.1\|1298706_1298799_+	hypothetical protein	NA	NA	NA	NA
WP_000268485.1\|1298997_1299765_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_001789890.1\|1299798_1299912_+	hypothetical protein	NA	NA	NA	NA
WP_000201387.1\|1299946_1300828_+	elongation factor Ts	NA	NA	NA	NA
WP_000057330.1\|1300964_1301687_+	UMP kinase	NA	NA	NA	NA
WP_001280006.1\|1301705_1302260_+	ribosome recycling factor	NA	NA	NA	NA
WP_000473705.1\|1302632_1303403_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.3e-25	41.5
WP_000868413.1\|1303409_1304192_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_110166340.1\|1304378_1305665_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_000814094.1\|1305684_1307388_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_078315529.1\|1307651_1311962_+	PolC-type DNA polymerase III	A0A0A8WJ41	Clostridium_phage	3.5e-23	41.2
WP_000036633.1\|1312251_1312719_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_000097460.1\|1312739_1313915_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_000727423.1\|1313935_1314220_+	YlxR family protein	NA	NA	NA	NA
WP_000020853.1\|1314216_1314534_+	YlxQ family RNA-binding protein	NA	NA	NA	NA
WP_000043635.1\|1314538_1316656_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
WP_000097322.1\|1317041_1317392_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_000282298.1\|1317560_1318478_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_7

1342075 : 1383805

Staphylococcus_phage(45.95%)

integrase,capsid,terminase,tail,tRNA,portal,head

attL 1362191:1362207|attR 1385168:1385184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001001521.1\|1342075_1343620_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_000282386.1\|1343620_1343986_+	YlbF family regulator	NA	NA	NA	NA
WP_000842277.1\|1344012_1344504_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
WP_000073352.1\|1344806_1347425_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.5e-41	23.7
WP_000516264.1\|1347437_1349447_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.7
WP_001077635.1\|1349452_1349995_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_001103743.1\|1350469_1351288_+	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1
WP_063644689.1\|1351416_1352913_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001218596.1\|1353070_1354744_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_110166341.1\|1354893_1355808_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001548613.1\|1355825_1356761_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_000561358.1\|1356775_1357009_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000448079.1\|1357230_1357707_-	glutathione peroxidase	Q70H87	Fowlpox_virus	7.9e-22	37.3
WP_000068617.1\|1357818_1359057_+	GTPase HflX	NA	NA	NA	NA
WP_110166342.1\|1359075_1360314_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000624945.1\|1360556_1360925_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001126603.1\|1360943_1362284_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
1362191:1362207	attL	NA	NA	NA	NA
WP_001836882.1\|1362423_1363551_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
WP_001183750.1\|1363603_1364299_-	Ltp family lipoprotein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
WP_000554410.1\|1364310_1364694_-	hypothetical protein	NA	NA	NA	NA
WP_000664917.1\|1364840_1365233_-	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
WP_110166343.1\|1365400_1365619_+	DUF739 family protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
WP_000932238.1\|1365645_1365921_+	hypothetical protein	NA	NA	NA	NA
WP_000392387.1\|1366185_1366356_+	hypothetical protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
WP_000800341.1\|1366344_1366551_-	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
WP_001157025.1\|1366611_1367295_+	phage repressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
WP_000072840.1\|1367393_1367555_+	DUF1270 family protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
WP_000786993.1\|1367641_1367959_+	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
WP_000786634.1\|1367948_1368215_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
WP_001004327.1\|1368219_1368756_+	host-nuclease inhibitor Gam family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
WP_000907597.1\|1368756_1369536_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
WP_000702007.1\|1369562_1370111_+	hypothetical protein	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
WP_000929466.1\|1370123_1371026_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
WP_000946005.1\|1371026_1371317_+	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
WP_000714410.1\|1371331_1371496_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
WP_174190227.1\|1371495_1371663_+	hypothetical protein	NA	NA	NA	NA
WP_001622384.1\|1371669_1371807_+	hypothetical protein	NA	NA	NA	NA
WP_000185176.1\|1371799_1372330_+	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
WP_025174970.1\|1372471_1372579_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	3.2e-08	87.5
WP_000835355.1\|1372575_1373040_+	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
WP_000653930.1\|1373316_1373805_+	hypothetical protein	R9TMH4	Paenibacillus_phage	4.3e-07	27.7
WP_000090969.1\|1373957_1374386_+	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
WP_000207537.1\|1374372_1375647_+\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	1.9e-195	76.4
WP_000158568.1\|1375659_1377108_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
WP_001282612.1\|1377097_1378627_+\|capsid	minor capsid protein	Q4ZE35	Staphylococcus_virus	1.9e-109	61.6
WP_063644543.1\|1378826_1378955_+	hypothetical protein	NA	NA	NA	NA
WP_000429653.1\|1378921_1379500_+	DUF4355 domain-containing protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
WP_110166344.1\|1379518_1380430_+\|capsid	capsid protein	Q4ZE33	Staphylococcus_virus	3.2e-96	59.3
WP_000104116.1\|1380507_1380981_+	Ig-like domain-containing protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
WP_001010139.1\|1380996_1381323_+\|head,tail	phage head-tail connector protein	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
WP_001198140.1\|1381628_1381979_+	HK97 gp10 family phage protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
WP_000680037.1\|1381988_1382384_+	hypothetical protein	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
WP_000276224.1\|1382395_1382995_+\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
WP_000256347.1\|1383056_1383401_+	hypothetical protein	A0A1J0MFH0	Staphylococcus_phage	7.7e-35	58.9
WP_001808026.1\|1383451_1383805_+	hypothetical protein	Q4ZE25	Staphylococcus_virus	1.7e-37	72.3
1385168:1385184	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1387000 : 1397610

Staphylococcus_phage(92.31%)

plate,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000350617.1\|1387000_1387936_+\|tail	phage tail family protein	A0A1J0MF79	Staphylococcus_phage	7.8e-98	55.9
WP_000598513.1\|1387944_1389630_+\|tail	phage tail protein	Q4ZE19	Staphylococcus_virus	8.8e-108	46.3
WP_000700622.1\|1389647_1390661_+	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	1.1e-97	52.6
WP_000013193.1\|1390679_1392077_+\|plate	phage baseplate upper protein	A0A1J0MFK8	Staphylococcus_phage	5.8e-105	44.7
WP_000438657.1\|1392089_1392479_+\|holin	phage holin family protein	A0A1S6L1J2	Staphylococcus_phage	5.3e-16	38.2
WP_001140242.1\|1392543_1393464_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	7.0e-67	51.5
WP_000889730.1\|1393663_1393792_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	7.5e-12	85.7
WP_000147562.1\|1393861_1393972_+	hypothetical protein	W5R8J7	Staphylococcus_phage	3.3e-08	83.3
WP_000006112.1\|1393973_1394159_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	1.9e-16	70.5
WP_001289724.1\|1394806_1395010_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	4.4e-14	61.8
WP_001814546.1\|1396003_1396201_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	50.0
WP_075111596.1\|1396888_1397107_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	6.4e-19	73.1
WP_001002340.1\|1397403_1397610_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7

DBSCAN-SWA_9

1681131 : 1689461

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1681131_1681917_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924220.1\|1682042_1682933_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
WP_001062187.1\|1682942_1684289_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000683929.1\|1684402_1685503_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_000624586.1\|1685505_1686183_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1686313_1687420_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217257.1\|1687643_1689461_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_10

1757296 : 1766339

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1757296_1757815_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000594991.1\|1757836_1760110_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.2e-63	28.8
WP_000749795.1\|1760312_1762592_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1762866_1763127_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1763145_1764285_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019178.1\|1764307_1765333_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_110166360.1\|1765334_1766339_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_11

1891546 : 1955672

Staphylococcus_phage(95.56%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110166366.1\|1891546_1898107_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.6e-309	99.0
WP_000836465.1\|1898432_1898744_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001808015.1\|1898765_1901183_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_001025061.1\|1901470_1902652_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_000526539.1\|1902761_1903715_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764419.1\|1903711_1904275_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000757543.1\|1904394_1904796_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|1905367_1906195_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|1906197_1906317_-	hypothetical protein	NA	NA	NA	NA
WP_001196354.1\|1906428_1907430_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001008551.1\|1907551_1908016_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159022.1\|1908028_1909210_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_000493892.1\|1909220_1909853_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
WP_000077358.1\|1909859_1910903_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
WP_001261668.1\|1911383_1912886_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
WP_000221177.1\|1913408_1913723_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
WP_000989122.1\|1913722_1915015_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	9.4e-227	99.3
WP_001032833.1\|1915101_1915956_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1916231_1916456_-	hypothetical protein	NA	NA	NA	NA
WP_000671052.1\|1916654_1917125_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
WP_001153742.1\|1917237_1917681_+	competence protein ComK	NA	NA	NA	NA
WP_001030469.1\|1917667_1918111_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001168901.1\|1918406_1919042_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|1919481_1920195_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091445.1\|1920454_1920757_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|1921012_1921378_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623478.1\|1921374_1921728_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
WP_000453314.1\|1922110_1922944_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
WP_000366166.1\|1923155_1924064_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-137	99.7
WP_000933822.1\|1924188_1925382_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109906.1\|1925753_1927346_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_001834463.1\|1927723_1928470_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
WP_000672014.1\|1928474_1928948_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
WP_000718107.1\|1929013_1929271_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778525.1\|1929267_1930269_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
WP_000348374.1\|1930273_1931752_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.1e-283	97.4
WP_072433592.1\|1931910_1932366_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	5.7e-78	97.9
WP_001795535.1\|1932668_1933319_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
WP_000070655.1\|1933399_1934395_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
WP_000669027.1\|1934470_1935097_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	5.3e-90	93.8
WP_000627537.1\|1935137_1935479_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
WP_000414214.1\|1935579_1936152_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
WP_000864143.1\|1936348_1936906_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2
WP_000375476.1\|1937278_1937455_-	hypothetical protein	NA	NA	NA	NA
WP_000731418.1\|1939006_1939450_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_063644710.1\|1939449_1939893_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_110166367.1\|1940431_1942858_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_001036003.1\|1942981_1943359_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000759947.1\|1943564_1944005_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000926704.1\|1944049_1945663_+	lipase	NA	NA	NA	NA
WP_000095395.1\|1945677_1945977_+	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_000072589.1\|1946103_1947312_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	9.3e-35	31.5
WP_000028671.1\|1947304_1948861_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.6e-287	98.3
WP_001791797.1\|1949024_1949159_-	hypothetical protein	NA	NA	NA	NA
WP_001038690.1\|1949223_1949943_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
WP_110166368.1\|1950093_1950810_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	7.0e-131	98.7
WP_011447030.1\|1950911_1951019_+	hypothetical protein	NA	NA	NA	NA
WP_001038706.1\|1950967_1951687_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
WP_001038872.1\|1951807_1952527_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
WP_001039444.1\|1952584_1953307_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
WP_001039433.1\|1953431_1954139_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
WP_001092776.1\|1955102_1955672_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.6

DBSCAN-SWA_12

2047579 : 2129215

Staphylococcus_phage(58.82%)

integrase,transposase,terminase,coat,protease,tRNA

attL 2046971:2046995|attR 2132419:2132443

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2046971:2046995	attL	NA	NA	NA	NA
WP_000545370.1\|2047579_2049007_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_000027917.1\|2049019_2050477_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_000170162.1\|2050478_2050781_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957020.1\|2051147_2052686_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831705.1\|2052774_2053974_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774565.1\|2053986_2055990_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992921.1\|2055993_2058186_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272070.1\|2058182_2058875_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|2059046_2059349_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|2059457_2060753_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827750.1\|2061612_2062779_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434934.1\|2062809_2063136_+	staphostatin A	NA	NA	NA	NA
WP_000669861.1\|2063427_2063601_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|2063581_2064184_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040866.1\|2064454_2065276_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
WP_000284433.1\|2065268_2066738_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
WP_000897635.1\|2066921_2067998_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177828.1\|2068017_2068812_+	prephenate dehydratase	NA	NA	NA	NA
WP_001802312.1\|2068883_2068991_+	hypothetical protein	NA	NA	NA	NA
WP_000323164.1\|2069001_2070564_-	SLC13 family permease	NA	NA	NA	NA
WP_000275706.1\|2070768_2071866_-	pectate lyase	U5PWM6	Bacillus_phage	2.5e-47	34.9
WP_000149686.1\|2072237_2072798_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2072850_2073780_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001790680.1\|2073974_2074148_-	hypothetical protein	NA	NA	NA	NA
WP_001021216.1\|2074199_2075579_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|2075698_2076727_-	lactonase family protein	NA	NA	NA	NA
WP_001284658.1\|2077185_2077566_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096372.1\|2077555_2079313_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_000733621.1\|2079419_2080265_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
WP_000612779.1\|2080577_2080988_+	YolD-like family protein	U3PG23	Staphylococcus_phage	3.1e-30	53.5
WP_000410574.1\|2082404_2082770_-\|transposase	transposase	NA	NA	NA	NA
WP_000026851.1\|2082778_2084842_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706213.1\|2084844_2085957_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	1.7e-11	31.6
WP_000267034.1\|2087018_2087192_-	hypothetical protein	NA	NA	NA	NA
WP_001188074.1\|2087642_2088683_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713070.1\|2088739_2089582_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_000966288.1\|2090195_2090720_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|2090840_2091404_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221651.1\|2091469_2092210_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|2092209_2093082_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645725.1\|2093078_2093759_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991303.1\|2093759_2094656_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|2094652_2095033_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681968.1\|2095291_2095468_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2095710_2095809_-	hypothetical protein	NA	NA	NA	NA
WP_001068523.1\|2096008_2097295_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000669702.1\|2097573_2099937_-	MAP domain-containing protein	NA	NA	NA	NA
WP_078315435.1\|2100325_2101318_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	2.4e-161	99.6
WP_000595401.1\|2101555_2102572_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
WP_000791404.1\|2102593_2103646_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6
WP_000206641.1\|2104080_2105304_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000812008.1\|2105675_2106521_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000825510.1\|2106582_2107494_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001045078.1\|2107654_2108962_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000216894.1\|2109533_2110160_-	hypothetical protein	C8CH40	Staphylococcus_phage	7.0e-42	44.5
WP_000201397.1\|2110156_2110336_-	hypothetical protein	NA	NA	NA	NA
WP_000921697.1\|2112802_2113303_-	hypothetical protein	NA	NA	NA	NA
WP_000879843.1\|2113916_2114600_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001245081.1\|2114800_2116270_-	hypothetical protein	NA	NA	NA	NA
WP_001293070.1\|2116453_2117023_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	5.1e-100	96.8
WP_078063999.1\|2117019_2117232_-	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-28	88.6
WP_000771377.1\|2117363_2117891_-\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	3.2e-88	96.6
WP_000448776.1\|2117941_2118160_-	hypothetical protein	NA	NA	NA	NA
WP_000846281.1\|2118177_2118756_-	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	3.7e-29	38.9
WP_001190614.1\|2118767_2119109_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
WP_001019789.1\|2119557_2120199_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	3.8e-104	88.7
WP_000356933.1\|2120195_2120576_-	hypothetical protein	Q4ZE71	Staphylococcus_phage	2.6e-68	97.6
WP_000447471.1\|2120887_2122597_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	0.0e+00	98.9
WP_001002725.1\|2122610_2123480_-	primase C-terminal domain-containing protein	Q4ZE74	Staphylococcus_phage	5.0e-163	95.5
WP_001103965.1\|2123544_2123871_-	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.8e-54	98.1
WP_000695071.1\|2123871_2124255_-	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	2.2e-62	96.9
WP_001231374.1\|2124256_2124460_-	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	7.5e-30	97.0
WP_000784889.1\|2124444_2124600_-	hypothetical protein	NA	NA	NA	NA
WP_000481967.1\|2124596_2124914_-	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
WP_000153640.1\|2124918_2125137_-	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
WP_000620856.1\|2125309_2125984_+	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	4.5e-39	45.3
WP_000179351.1\|2125997_2127170_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQD3	Staphylococcus_phage	9.2e-221	98.7
WP_110166375.1\|2127247_2128855_-	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_000917289.1\|2128930_2129215_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
2132419:2132443	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP029627.1|WP_110166336.1|1248692_1248944_+|DUF1024-family-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP029627.1|WP_110166336.1|1248692_1248944_+|DUF1024-family-protein

1248692_1248944_+

83 aa aa

1235821-1318478

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP029627_3	Orphan	3.1\|887260\|34\|NZ_CP029627\|CRISPRCasFinder	887260-887293	34	1282568-1282535	2
NZ_CP029627_4	Orphan	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	1282608-1282644	2
NZ_CP029627_4	Orphan	4.2\|1154610\|37\|NZ_CP029627\|CRT	1154610-1154646	37	1282664-1282700	2
NZ_CP029627_4	Orphan	4.3\|1154666\|37\|NZ_CP029627\|CRT	1154666-1154702	37	1282552-1282588	1
NZ_CP029627_8	Orphan	8.1\|2694678\|34\|NZ_CP029627\|CRISPRCasFinder	2694678-2694711	34	1282535-1282568	1

1. spacer 3.1|887260|34|NZ_CP029627|CRISPRCasFinder matches to NZ_CP029627 position: 1282568-1282535, mismatch: 2

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaacttctctttgttggggcccat	Protospacer
****.********.********************

2. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to NZ_CP029627 position: 1282608-1282644, mismatch: 2

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

3. spacer 4.2|1154610|37|NZ_CP029627|CRT matches to NZ_CP029627 position: 1282664-1282700, mismatch: 2

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

4. spacer 4.3|1154666|37|NZ_CP029627|CRT matches to NZ_CP029627 position: 1282552-1282588, mismatch: 1

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaagttggattcccaatttctacagacaatgcaagtt	Protospacer
***.*********************************

5. spacer 8.1|2694678|34|NZ_CP029627|CRISPRCasFinder matches to NZ_CP029627 position: 1282535-1282568, mismatch: 1

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029627

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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