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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020650 Bordetella bronchiseptica strain E001 chromosome, complete genome 7 crisprs csa3,DEDDh,cas3,DinG 2 1 2 0

Results visualization

1. NZ_CP020650
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_1 897477-897633 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_2 1005764-1005848 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_3 1409691-1409780 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_4 1528724-1528810 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_5 2349345-2349503 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_6 4413617-4413710 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020650_7 4768263-4768343 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP020650_3 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder 1409723-1409748 26 NZ_CP020650.1 1424480-1424505 0 1.0
NZ_CP020650_1 1.2|897591|24|NZ_CP020650|PILER-CR 897591-897614 24 NZ_CP020650.1 897348-897371 1 0.958
NZ_CP020650_1 1.2|897591|24|NZ_CP020650|PILER-CR 897591-897614 24 NZ_CP020650.1 797992-798015 2 0.917
NZ_CP020650_1 1.2|897591|24|NZ_CP020650|PILER-CR 897591-897614 24 NZ_CP020650.1 2948957-2948980 2 0.917
NZ_CP020650_1 1.2|897591|24|NZ_CP020650|PILER-CR 897591-897614 24 NZ_CP020650.1 4542302-4542325 2 0.917

1. spacer 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder matches to position: 1424480-1424505, mismatch: 0, identity: 1.0

gccggggaagtggcaggcgtggaggt	CRISPR spacer
gccggggaagtggcaggcgtggaggt	Protospacer
**************************

2. spacer 1.2|897591|24|NZ_CP020650|PILER-CR matches to position: 897348-897371, mismatch: 1, identity: 0.958

ggactggcaccggcaagatttcat	CRISPR spacer
ggactggcacctgcaagatttcat	Protospacer
*********** ************

3. spacer 1.2|897591|24|NZ_CP020650|PILER-CR matches to position: 797992-798015, mismatch: 2, identity: 0.917

ggactggcaccggcaagatttcat	CRISPR spacer
ggactggcgcctgcaagatttcat	Protospacer
********.** ************

4. spacer 1.2|897591|24|NZ_CP020650|PILER-CR matches to position: 2948957-2948980, mismatch: 2, identity: 0.917

ggactggcaccggcaagatttcat	CRISPR spacer
ggacaggcacctgcaagatttcat	Protospacer
**** ****** ************

5. spacer 1.2|897591|24|NZ_CP020650|PILER-CR matches to position: 4542302-4542325, mismatch: 2, identity: 0.917

ggactggcaccggcaagatttcat	CRISPR spacer
ggacaggcacctgcaagatttcat	Protospacer
**** ****** ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020650_3 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder 1409723-1409748 26 NC_006462 Thermus thermophilus HB8 plasmid pTT27, complete sequence 62762-62787 4 0.846
NZ_CP020650_3 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder 1409723-1409748 26 NC_017273 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence 315533-315558 4 0.846
NZ_CP020650_3 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder 1409723-1409748 26 NC_017588 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence 183427-183452 4 0.846
NZ_CP020650_3 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder 1409723-1409748 26 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 2721627-2721652 4 0.846

1. spacer 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .********** 

2. spacer 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .********** 

3. spacer 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .********** 

4. spacer 3.1|1409723|26|NZ_CP020650|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
gccggggaagtggcaggcggcgcagt	Protospacer
*******************  * .**

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2304475 : 2312541 9 Moraxella_phage(28.57%) tRNA NA
DBSCAN-SWA_2 3633041 : 3655422 30 Pseudomonas_phage(18.18%) terminase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage