CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021162	Enterobacter hormaechei strain 234 chromosome, complete genome	2 crisprs	DEDDh,csa3,WYL,DinG,cas3	0	2	5	0
NZ_CP021163	Enterobacter hormaechei strain 234 plasmid p234, complete sequence	0 crisprs	RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021162_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021162_1

1169309-1169413

Orphan

Consensus_repeat	Method
TGTCCAGCCGATGTCCAGCCGGTGTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021162_1

>merge|NZ_CP021162|1|1169309-1169413|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCAGCCGGTGTCCAGCCCAAACGCAGTCGTACCAATGCCTGCGGAGGTGGAATGTCCAGCCGATGTCCAGCCAGTGTCCA

>NZ_CP021162|1|1|1169309-1169413|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCA	GCCGGTGTCCAGCCCAAACGCAGTCGTACCAATGCCTGCGGAGGTGGAA
TGTCCAGCCGATGTCCAGCCAGTGTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021162.1\|WP_110108197.1\|1171544_1172081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108203.1\|1174829_1175498_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277367
NZ_CP021162.1\|WP_110108188.1\|1163774_1164746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP021162.1\|WP_110108202.1\|1174662_1174833_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP021162.1\|WP_110108201.1\|1174220_1174670_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP021162.1\|WP_110108195.1\|1169815_1171249_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP021162.1\|WP_110108189.1\|1164816_1165026_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236900
NZ_CP021162.1\|WP_110108193.1\|1167163_1167802_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_CP021162.1\|WP_110108192.1\|1166785_1167139_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236813
NZ_CP021162.1\|WP_032676295.1\|1167906_1168122_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP021162.1\|WP_110108194.1\|1168152_1168698_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP021162.1\|WP_110108191.1\|1165846_1166284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_165835088.1\|1165022_1165181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108200.1\|1173328_1173583_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349588
NZ_CP021162.1\|WP_023330682.1\|1173728_1174010_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_015571544.1\|1168787_1168934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108190.1\|1165177_1165687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108199.1\|1172301_1172670_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108198.1\|1172077_1172305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_110108196.1\|1171248_1171548_+\|protein-ren	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021162.1\|WP_110108194.1\|1168152_1168698_+\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	1.48864e-37
NZ_CP021162.1\|WP_110108203.1\|1174829_1175498_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277367	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.13594e-109
NZ_CP021162.1\|WP_110108188.1\|1163774_1164746_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	7.95564e-10
NZ_CP021162.1\|WP_110108200.1\|1173328_1173583_+\|hypothetical-protein	gnl\|CDD\|349588	cd18279, BTB_POZ_SPOP-like, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins. This family includes speckle-type POZ protein (SPOP), speckle-type POZ protein-like (SPOPL), TD and POZ domain-containing proteins (TDPOZ), Drosophila melanogaster protein roadkill and similar proteins. Both, SPOP and SPOPL, serve as adaptors of cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes that mediate the ubiquitination and proteasomal degradation of target proteins. TDPOZ is a family of bipartite animal and plant proteins that contain a tumor necrosis factor receptor-associated factor (TRAF) domain (TD) and a POZ/BTB domains. TDPOZ proteins may be nuclear scaffold proteins probably involved in transcription regulation in early development and other cellular processes. Drosophila melanogaster protein roadkill, also called Hh-induced MATH and BTB domain-containing protein (HIB), is a hedgehog-induced BTB protein that modulates hedgehog signaling by degrading Ci/Gli transcription factor. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.	0.00764533
NZ_CP021162.1\|WP_110108202.1\|1174662_1174833_+\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	2.36125e-21
NZ_CP021162.1\|WP_110108195.1\|1169815_1171249_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP021162.1\|WP_110108189.1\|1164816_1165026_-\|cell-division-protein-FtsZ	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	7.1772e-36
NZ_CP021162.1\|WP_110108201.1\|1174220_1174670_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	4.37757e-51
NZ_CP021162.1\|WP_110108193.1\|1167163_1167802_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.6865e-36
NZ_CP021162.1\|WP_110108192.1\|1166785_1167139_-\|hypothetical-protein	gnl\|CDD\|236813	PRK10993, PRK10993, omptin family outer membrane protease.	0.00836854
NZ_CP021162.1\|WP_032676295.1\|1167906_1168122_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.46562e-10

>NZ_CP021162.1|WP_015571544.1|1168787_1168934_+|hypothetical-protein
MAKNPRYYHTAVHKNITRDRFIRSVNPIVAEKMRAILEELKRKESGRG
>NZ_CP021162.1|WP_110108194.1|1168152_1168698_+|hypothetical-protein
MHSLAYQQGNKFSPTAMIYQNRREPDSRALNIDGIRTAVRAWAADCRSREFVAALIVEEWRATGGTGLDIPTDSHRQMQKVFRWIDGDTEYAANNIRQLAPAIMAVLPLEYRHRLLPEDSFMSRLARLEKETSEAKVAVAMNAPRHQKLKELSEGIVEMFRVDPDLTAPLMAMVTSMLGVM
>NZ_CP021162.1|WP_032676295.1|1167906_1168122_+|helix-turn-helix-transcriptional-regulator
MNNIANERKKLGITQSELAGSCGWNQSRLANYEAGIRAPDLDSCRRLVEAMNKLGSNTSLDALFPPKNNAA
>NZ_CP021162.1|WP_110108193.1|1167163_1167802_-|LexA-family-transcriptional-regulator
MRMKKNESIASRIKRIRESKGLSQRALADLCGWASQSRIGNYEAGTRSVSVDDAEVIAKALGISAPELLFGDDFVGHYKPGAKYPLISWVSAGAWCEANEPYTLKDIEEWYESDAHIEGTAFWLRVQGDSMTSSVGLSIPEGMMVLVDTGKEPVNGSLVIAKLTDANEATFKKLVIDGGNKYLKGLNPQYPLIPINGNCRIIGVAIQTMMKL
>NZ_CP021162.1|WP_110108192.1|1166785_1167139_-|hypothetical-protein
MKKIILALAVSAMLSGCVMKSTAHAGKDFDETKISQIVSKQTTEADLLRLMGEPVKKEIVSDNEVKWIYEYVTSNAAVRMFSTKPKVDVSKKVLEVLIRDGVVVNHAYTNPGTTTYK
>NZ_CP021162.1|WP_110108191.1|1165846_1166284_-|hypothetical-protein
MLGDGNTAISTAQETMILFWLDWKSLLGPPARGHFFGGCMFATDISLKYGTHQPETILETMPIEEASEIIKEKLRDEVRQELECEYGDRLYEAEEEASNWESRADDYESDATCLAKAIREAFESANFKDANVILQRAMHDHKDYF
>NZ_CP021162.1|WP_110108190.1|1165177_1165687_-|hypothetical-protein
MTLIELTKKKMAIEAELAQLKAKFVDDTSRIGKELIAVSEGINQTNKGLTVEMVRHGMTIINFGDPKQSMERRGCVEDAINDIASGVTRLSERYFGTKNYAQWSDQREDHRYGYGPKHGSICFKIGLTGTALNKLASGGLSDYDAECAIYCLMNIDAINAANAKAREAS
>NZ_CP021162.1|WP_165835088.1|1165022_1165181_-|hypothetical-protein
MTVTHNGKQYTAKKLNDNEWQLTSVSNPREKLTMNRWHMKLAGLLEQVEVKV
>NZ_CP021162.1|WP_110108189.1|1164816_1165026_-|cell-division-protein-FtsZ
MMHHYGTTPLIRQCVMPGMMAMHEGRTYRVSAVIQERKWVYLHTDAEIIRLSDCVIDVLLDGHGNPIQH
>NZ_CP021162.1|WP_110108188.1|1163774_1164746_-|hypothetical-protein
MSEVTDLTVIEIKPEQAPVLYVAGGLDAYLEQIRQAVNEVPDLSTKKGRDRVASLAAQVSRSKTAIEKPGREYLKRLKEAVRPAEAEIKRFVDACDELRDATRRPLTEWEAEQERIKAEEAMKALHAEALEMNIKFDQELAAKFEADHELALLMNKDFDRDREEQRRQAEQAQRDHEERIKREAAEKASRDAEAKHKAEIEAAARREAEEKARAELAERQRIEAEQRAAREKQEAEARAEREKAAAVEAERLKAKQAEAARLAEQKRIADEQAKREADVKHRKTVGTNIVNALTSHTSLTREQAIEVLTALKDDLIPCAKIHY
>NZ_CP021162.1|WP_110108195.1|1169815_1171249_+|AAA-family-ATPase
MTAEFMAVPQNLEAEQSVIGGLLLDDDNSERVQKVLAMLKPESFYSRPHQLIFAEMRQMFRDNKPVDGLTLFDALEGKGLAEQVGGFAYLAEIAKNTPSAANIVAYAASVREAAMERYGISRLTEATELLYSRNGMSATQKYEAIQGIFTQLADHSKTGSRRGLRSFGEVMDDWVADLEKRFDPSGEQRGMSTGIPSLDQLLAPKGLVKGSLFVIGARPKMGKTTLYGQMAINCAVREKKPALMFSLEMPGDQILEKLVGQKSGVNPSIFYMPATDDADDKYQGDYDGDFKKAIATAGRLSEIDMLYIDDTPGLSLAHIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELGCVVVLLTQLNRELEKRVNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGSTGTVYCNQINGAIYDTDQQAAAAERRGREQQPKKKGGF
>NZ_CP021162.1|WP_110108196.1|1171248_1171548_+|protein-ren
MKGKQAILRYLETHRTFTAKDVATECGMTINCITKNAIDLERARKIVRVSKVWRTVTYRLATPEEQDGTARSCTNGIFQECRNSAAMKRVLMVWGRAGV
>NZ_CP021162.1|WP_110108197.1|1171544_1172081_+|hypothetical-protein
MKKKFIEWFTKNNNGCSPAMEDDRSFVHEKTQHMFEAYQAGVAEGEARCAALAAENAGMNAFVDALLSIAWQGCGADGAEIQELAMKNGLLRQEVYSSDEHETLVDDPGNFEDGDPVYFRIETPASDDFLAEVRAQGVEMAAKSEQFSAWVQQGLRSFAIGVRQGDECADELRKGVQS
>NZ_CP021162.1|WP_110108198.1|1172077_1172305_+|hypothetical-protein
MSNEAMKMALAKQLTIALQNLGAPVELLCIVGSYGDTQTDSDILEMLEQHNERGTCMNVIIEPEFTWKPNSGAAQ
>NZ_CP021162.1|WP_110108199.1|1172301_1172670_+|hypothetical-protein
MSNIDKQALVIPQRERHDWSQAVMRNCDFCQQWALTVRHSDGGCICASCCDSEYTTALTIALVVALDELEAKDRRIADYQARLYRIERRCDHHGSVYWDVSNVKRCAKCGMAIIESANGATS
>NZ_CP021162.1|WP_110108200.1|1173328_1173583_+|hypothetical-protein
MGKLTFVIEFEDGKEPPAHAHMEALGGKVVAVAFRDALSEGNPTETITTHPQVLSEMRCFICNGKHPIGIACPLSSPTVVSHDA
>NZ_CP021162.1|WP_023330682.1|1173728_1174010_+|hypothetical-protein
MSIDQLCMKQECWALEMLGRVGALTQCPHHEGAYVDEGVDEANIYKYAAGAYKKSNGGHPFENFKEMTDAVKGAYEEHGGNDVCPLCFKRVDD
>NZ_CP021162.1|WP_110108201.1|1174220_1174670_+|recombination-protein-NinB
MKQHYCIVNDTVKDNLIAYIRTLPVNPRAPMVVEAREETRTDKQNRLMWPLLKDLSDQVVWHGEKLTREEWKDLITVLVNQTQHQEQKSAPGINGGRVYFGVRTSKSSKRYMVDVIEAIYWFGTEHGVKFSEASNRRIVWAHEWRASRG
>NZ_CP021162.1|WP_110108202.1|1174662_1174833_+|hypothetical-protein
MGNPLARVITNEIFRVPVRRKRKAAVKPSDIPTLKDYTARLVDQKWLRLAARRKSA
>NZ_CP021162.1|WP_110108203.1|1174829_1175498_+|serine/threonine-protein-phosphatase
MSMYQRINGADWRNIFVVGDLHGCYTLLMSELEKASFDPARDLLISVGDLVDRGAENVECLELITMPWFRAVRGNHEQMMIDGLSEFGNVVHWLANGGGWFFNLDYDKEVLAKALVHKTADLPLVIELVTGDKKVVICHADYPHNEYAFDKPVPEEMVIWNRERVSDAQDGIVSPIAGADLFIFGHTPARHPLKYANQMYIDTGAVFCGNLTLVQVQGGAHA

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Crispr_ID: NZ_CP021162_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021162_2

2043355-2043478

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021162_2

>merge|NZ_CP021162|2|2043355-2043478|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP021162|2|2|2043355-2043478|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021162.1\|WP_003857629.1\|2052376_2052958_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP021162.1\|WP_032609058.1\|2043638_2045012_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP021162.1\|WP_003857641.1\|2045910_2047059_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP021162.1\|WP_110108354.1\|2033023_2036434_+\|type-VI-secretion-protein-VasK	unknown	unknown	gnl\|CDD\|226054
NZ_CP021162.1\|WP_110108356.1\|2039179_2040274_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP021162.1\|WP_110108357.1\|2040248_2040779_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|378947
NZ_CP021162.1\|WP_022650936.1\|2042305_2042506_+\|cell-surface-composition-regulator-GlgS	unknown	unknown	gnl\|CDD\|179501
NZ_CP021162.1\|WP_003857634.1\|2049598_2050624_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP021162.1\|WP_110115467.1\|2036708_2037362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_058647759.1\|2037461_2039225_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|377574
NZ_CP021162.1\|WP_045346475.1\|2031876_2033037_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_045339057.1\|2041553_2041949_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182205
NZ_CP021162.1\|WP_003857652.1\|2040778_2041222_+\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
NZ_CP021162.1\|WP_003857632.1\|2050921_2051011_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP021162.1\|WP_003857638.1\|2048669_2049581_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP021162.1\|WP_003857631.1\|2051172_2052339_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP021162.1\|WP_023313959.1\|2053080_2053839_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP021162.1\|WP_003857647.1\|2042678_2043149_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NZ_CP021162.1\|WP_003857639.1\|2047357_2048557_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP021162.1\|WP_003857643.1\|2045237_2045879_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP021162.1\|WP_003857629.1\|2052376_2052958_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.40399e-136
NZ_CP021162.1\|WP_032609058.1\|2043638_2045012_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP021162.1\|WP_003857641.1\|2045910_2047059_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP021162.1\|WP_110108354.1\|2033023_2036434_+\|type-VI-secretion-protein-VasK	gnl\|CDD\|226054	COG3523, IcmF, Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].	4.11348e-106
NZ_CP021162.1\|WP_110108356.1\|2039179_2040274_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	3.95556e-86
NZ_CP021162.1\|WP_110108357.1\|2040248_2040779_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|378947	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113. One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.	1.47792e-38
NZ_CP021162.1\|WP_022650936.1\|2042305_2042506_+\|cell-surface-composition-regulator-GlgS	gnl\|CDD\|179501	PRK02922, PRK02922, cell surface composition regulator GlgS.	5.34664e-29
NZ_CP021162.1\|WP_003857634.1\|2049598_2050624_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP021162.1\|WP_058647759.1\|2037461_2039225_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|377574	pfam05947, T6SS_TssF, Type VI secretion system, TssF. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssF. TssF is homologs to phage tail proteins and is required for proper assembly of the Hcp tube (the T6SS inner tube) in bacteria.	0
NZ_CP021162.1\|WP_045339057.1\|2041553_2041949_+\|hypothetical-protein	gnl\|CDD\|182205	PRK10040, PRK10040, hypothetical protein; Provisional.	4.04631e-15
NZ_CP021162.1\|WP_003857652.1\|2040778_2041222_+\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	1.57425e-27
NZ_CP021162.1\|WP_003857638.1\|2048669_2049581_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP021162.1\|WP_003857631.1\|2051172_2052339_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.19451e-99
NZ_CP021162.1\|WP_023313959.1\|2053080_2053839_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.9126e-42
NZ_CP021162.1\|WP_003857647.1\|2042678_2043149_+\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	3.67422e-40
NZ_CP021162.1\|WP_003857639.1\|2047357_2048557_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP021162.1\|WP_003857643.1\|2045237_2045879_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.19053e-120

>NZ_CP021162.1|WP_003857647.1|2042678_2043149_+|Hsp20-family-protein
MMTLRTFPVLNDLSDSLFADRFNRIDRLFSQLTGSTPLPSTPSYNIRRLGDNRYELTLSVPGWKESELEIETVGGQLNISGKREEEKTENGEEGWIHRGISRSDFRASYSLPEHVKVTGASLENGLLAIELHQDIPEEEKPQRIAINNNPAIEHKP
>NZ_CP021162.1|WP_022650936.1|2042305_2042506_+|cell-surface-composition-regulator-GlgS
MKRQDINALKNFDFLARSFARMYALGQPVDIDAVTGNMSNKQQAWFRERYDHYRKQAERARVIELR
>NZ_CP021162.1|WP_045339057.1|2041553_2041949_+|hypothetical-protein
MKMRILLLTVSVLFNMQAGAARGRQPCSGSKGGIAHCTSDGRFVCNDGSLSQSKRFCSGYGASELPRQVKPSPSARKAQTKKRIAVKGQEQRVVENNAQFDTQPRQPTCAPLYMANKPGFTHLPICSGNQY
>NZ_CP021162.1|WP_003857652.1|2040778_2041222_+|type-VI-secretion-system-baseplate-subunit-TssE
MPRPSLYDMLYGNFAGGLDLHSVSEENQLILSVLDNMQRILNCRAGTLAHLPDYGLPDMTKILQGMPGTAHQLITTLSAVLLKYEPRLSRINVVMQEQIQPGELRYAIDAELKGVGLVRYGTEFMPEGRVLIRHLKQQQYLDNTARL
>NZ_CP021162.1|WP_110108357.1|2040248_2040779_+|type-VI-secretion-system-lipoprotein-TssJ
MKMAITAGKALAITLATLLTGCGLTQKVTDGTVAVTKSFFYRQVKTLHLDIQAREGVNNNAKGASLATVVRIYQLKERKAFDSTDYPSLFASDTQAIKADLVAEKDIRLRPGESVTLDMPMEESAQVVAVAGMFMAPDQVNDTWRITLTRDDLDPDKARVIEVSNNRLTLKPLEGE
>NZ_CP021162.1|WP_110108356.1|2039179_2040274_+|type-VI-secretion-system-baseplate-subunit-TssG
MYPVERESQSAPARLMAQVRHQLPYMNFYRFCQLLEQSLPEMPVPGSDWRVRQEPVRFRPHPGMGFPSGEIRGMEDPEHPHLPPSVRVTFMGLYGVESPLPTHYTDDIAQRREGHDATQDFLDIFSHRLITQYYRIWRKYSYPATFKAGGADNTSQYLLGLAGLGIPGCAQAAGTPLSRFLALLPVMMLPGRTAEGMGALVRLLAPDTRTHVYHHDRCRIPLKQPVAMSTCQPVSLKHRPVMGTHATDVNGQVLLRLSTDNPEEIRGWLPGGDLHADLMALLHVWLGAHLDVRMQLCVARHLLPDARLSCNAVQIAQVGRTAVLRPLNPQQNRNDIITIHPGRFQRVRENIQRRKNDEDGDYRW
>NZ_CP021162.1|WP_058647759.1|2037461_2039225_+|type-VI-secretion-system-baseplate-subunit-TssF
MEDLTLRYFDAEMRYLREAAKEFAQTHPDRAAMLDLDKAGTPDPYVERLFEGFAFSMGRLREKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALSPDVPAMKMAETLSAGLEISSRPVGPKNTVCRYRTTRDLTLNPLAVEKVIMTTEPDGRSLLRVRFACSTQADWPQTDLRHLPLYLGEDRVTGSSLHLWLTKRQAALYIRLPGQTERIALDGYFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENITLPAGTAYFDIEVVFSQVWQSDLPVTDSSLRLHCVPVINLFTLEADPLTISGLESEYLLRPKRLQDGHTEIYSVDSVNGSGRTGEAHYVPFTSFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILGGQQWEADRMLERETVSLRITGTNGQLPRRALQSTLLDRCEQVYDTPLTVRNLCKPTLPAYPPAEDRFHWRVMSHLGSRFLNMMSSALVLRGTLSLYNWRDDELNNRRLDAILDVRHHRIQRFEDGFLLRGLDVEVTLDSNGFTGEGDIHLFGELLNRFFALYADMNQFNQLTLIVQPEGKCIRWKENHSPRLPG
>NZ_CP021162.1|WP_110115467.1|2036708_2037362_+|hypothetical-protein
MHLIMKIILSVIFIQLSGCTAILWGENRVADTKIKERTLISDEVTAAFYYENLSASAIQGKTQVRVEIPRDGFAFKGEKNIYILTKGAKELFALDKLSTQVALVTGYVKFDGLRLKLDMPRGNDLVMHFSDALVLQVNKSDSNLTAQDIDDLKKMGFWNEGGRYIKQIRLEGVIIPRDKNDSLFNNSEKLVKKHNVEFYSTEDSTHFHPLRLATNIV
>NZ_CP021162.1|WP_110108354.1|2033023_2036434_+|type-VI-secretion-protein-VasK
MTPVSSWSRGGLAGIVALISLTIVGLILHFGPQYGLDTRLKQMMALATAWLVLLIACNMPFVFRVMREKHHRWREQKNSALPSDESRVARIPPRNATVTTMREAMRNLYGRRWGRKIRILLLTGTVSEVEQLTPGLTAQLWQEDRGTLLLWGGDLNTPADSAWLTALRKLRRRPVDGLVWVTSAFDQLSAPGLEQPLPVPSESTMDSLSHAISSRMETLGWTLPLYVWSLHPRAGKPEGRITQATGCLLPAGCRTEGLAEQISALTPDLTSQGLQQICGEVKHNFLLTLADQLIREPESLTAPLSVILNPYRPLLLAGVVFSQPSAGAERAVPHHWGMDKRWDVLPDSLRMLPAALRPRKPGIPWRRGVAFAAALTMAGWAAWMSIAYVTNRSQIDGAKAQALLAARQNQPLEQRLHALSELQKTLASLQYRSEHGVPWYEQGGLSQNDALLAALWPRYRDSALPLLRDAAADHLQKHISAFNALPPESSLREQKAKTTWEQLKLYLMLARPEHMDTNWFSSALLNDWQTRDGVKDGVWQGMAPSLLSFYGAQLVAHPEWKLRADESMVSQARSLLVRLMGVRNSESTLYQKMLTQVSHLYVDMRLEDMTGDTDASRLFSTSEVVPGMFTRQAWEQAVQPAIEKVVKARRDELDWVLTDSKRQVNKQDETSPEALKTRLTERYFADFCGVWLEFLNSLRWNQAATLSDSIEQLTLMADVRQSPLVALMNTLNVQGRTGQTGEAISDSLVKSAKNLLGGDNQDAIDQSAGVHGPLDATFGPVLALMDKNRTGAQELSLQSYLTRVTQVRLRLQQVTNAADPQAMTRLLAQTVFQGKAVDLTETRDYGSLIAAGLGQEWSGFGRTVFVSPMEQAWQQVLTPAAESLNAQWQTAVVDDWNNAFGGRYPFKDVSSEVSLPLLARYLNADSGRITRFLQTRLNGVLHREGSHWVPDSINAQGLTFNPAFLRAVDTLSHISDVVFTRGEAGLSFELRPGTADGIMETRLVIDSQKLTYMNQMPAWKSFIWPADTEAPGAALSWISTQAGTRQYADMSGAWGWIRLLDKASVSAYPGTGSSYSLTWQAQDGKPLNYTLRTEAGEGPLALLKLRNFSLPLQIFTVSEPAADPQTDDTDPTEETY
>NZ_CP021162.1|WP_045346475.1|2031876_2033037_+|hypothetical-protein
MGWERSKATTKALPPEPSFVGWLLAGGVAVFVGVLLFILHASGMVKTLSVLNIWWLAFSPVLGWFFLFCLRGWLWGRTVDEHYFLQKEAEYGQQQWENWAGRYLAVLGSSILLPSGVTSDAIAKAEASNAPQLLSLTSHFDAQSVNSGSLFALGIASMQNAIAILPTTLPLKITVVSDAVSAAADSQFRKVWESIYPRRTIPGSVCFCESLSFAWVEERLKTPVLDIDLILVLQKHGDGRYSDSLASMLLTSDDVAEKYQLSHSARLLRPMPLDMSHFQADMELFLETQTIAYQTSKVFCDYGQWNDWFAELMTASESPQAPWMPEEIDILEKYNGIPGTGSAWLLAALLSDIVTVSQATVLGLFTSGTDRFVSTITSGSNHNDAG
>NZ_CP021162.1|WP_032609058.1|2043638_2045012_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYMIEARQLLALAIPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRDRVAHQVRQGFWLAGFVSVLIMIVLWNAGYIIRAMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFGSMLTYIKHARSMRDIRNDTAFSTPDWSMLTRLTQLGLPIALALFFEVTLFAVVALLVSPLGIIDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAARTGLGVGVCMAVCTALFTVLLREQIALLYNDNPEVVTLASHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPCGYILALTDLVVDRMGPAGFWMGFIIGLTSAAIMMMLRMRFLQRQPSTVILQRAAR
>NZ_CP021162.1|WP_003857643.1|2045237_2045879_+|riboflavin-synthase
MFTGIVQGTAKVVSIDEKPNFRTHVVELPEYMLDGIETGASIAHNGCCLTVTEINGNQISFDLMKETLRITNLGELVVGDIINVERAAKFSDEIGGHLMSGHIMTTAEVAKIVTSENNRQIWFKVQDPSLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGAKKLGQRVNIEIDPQTQAVVDTVERVLAAKEAAIIKTVEEE
>NZ_CP021162.1|WP_003857641.1|2045910_2047059_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWSRIVSELLGRAGITINGSSPSDPQIKHPDFFKRVLQEGSLGLGESYMDGWWECERLDMFFSSVLRAGLEKQLPRHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPLMQYSCGYWKKATTLEEAQQDKLQLICDKLQLQPGMRVLDIGCGWGGLAWFMAKNYGVSVVGVTISAEQQKMAQERCLGLDVDIRLQDYRDLNEQFDRIVSVGMFEHVGPKNYKTYFEVADRNLKPDGIFLLHTIGSKRTDNNVDPWINKYIFPNGCLPSVRQIANASEPHFIVEDWHNFGADYDTTLMAWHERFQAAWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP021162.1|WP_003857639.1|2047357_2048557_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPRKGFLVWLGGLSVLGFLATDMYLPAFAAMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPLSDRFGRKPVLLLGLAIFAAGCLGMLWVRDAAWLLALRFIQAVGVCAAAVTWQALVTDYYPASRTNRIFATIMPLVGLSPALAPLLGSWILAHFDWQAIFATLFAITLVLMLPAFGLKPAHKKETHPDAKPITFTSLLRSKAYRGNVLIYAACSASFFAWLTGSPFILHDMGYSPAAIGLSYVPQTIAFLVGGYGCRAALQKWEGQQMLPWLLVLYALSVIATWAVGFIPGAGLAEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSALIATPLLTTTSVMLITVALAGLGYRMQSSALREQNDNAQTETSHA
>NZ_CP021162.1|WP_003857638.1|2048669_2049581_+|LysR-family-transcriptional-regulator
MWSDYSLEVVDAVARNGSFTGAAQELHRVPSAISYTVRQLEAWLAVPLFERRHRDVELTPAGAWFLKEGRSVIKKMQITREQCQQIANGWRGHLAIAVDNIVKPERTRQMIVDFYRHFSDVELRVSQEVFNGVWDALADGRAEMAIGATQAIPVGGRYAFRDMGMLSWTCVVARDHPLAALEGPLSDDTLRNWPSLVLEDTSRSLPKRITWLLDNQRRVVAPDWESSATCLSAGLCVGMVPVHFARPRIDAGEWVALTLENPFPDAACCLTWQQNDVSPAMAWLLDYLGDSETLNREWLREPA
>NZ_CP021162.1|WP_003857634.1|2049598_2050624_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNIEKQRAYLSMMAQKRVDGLLVMCSEYPESVLSMLEEYRHIPMVVMDWGEARADFTDSVIDNAFEGGYMAGRYLVERGHREIGVIPGPLERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQIVSQPHRPTAVFCGGDIMAMGALCAADELGLRVPQDISVIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREQSQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP021162.1|WP_003857632.1|2050921_2051011_+|YnhF-family-membrane-protein
MSTDLKFSLFTTIVVLALIVAGGLTAALH
>NZ_CP021162.1|WP_003857631.1|2051172_2052339_+|MFS-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMAIFTLGNVFSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGEAIGWRMSFLATAGLGVVAMVALFFSLPKGSAGERPEVRKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLHDITHATPLFVTAMLVLIGVGFSIGNYLGGKFADRSVSGTLKGFLTLLIVIMVAIPWLARNEVGAAIAMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAALGLLLVIMSGRKQPQAVCTAE
>NZ_CP021162.1|WP_003857629.1|2052376_2052958_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTDFEGKTLEEIVRSSDGGVFNNAAQVWNHTFYWHCLAPNAGGEPDGELAAAINAAFGSFADFKAKFTDAAVKNFGSGWTWLVKEADGKLAIVSTSNAGTPLTTSATPLMTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA
>NZ_CP021162.1|WP_023313959.1|2053080_2053839_-|C40-family-peptidase
MARITKISMTLCALLFTTLSFTPAANASEQARHSAVQKTHLAKSTERKKKTTSKTVKKKITAQTKKTASSKTKTLRSGTHKTTRTTASLVNEKCTVRKGHKTKCAKVTKLADVHKARMQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPVNRGELQNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQDIQITSLSEDYWVRHYVGARRVMTPKTIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021162_2	2.1\|2043398\|38\|NZ_CP021162\|CRISPRCasFinder	2043398-2043435	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP021162_1	1.1\|1169337\|49\|NZ_CP021162\|CRISPRCasFinder	1169337-1169385	49	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	33521-33569	3	0.939

1. spacer 2.1|2043398|38|NZ_CP021162|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cagacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
********..****************************

2. spacer 1.1|1169337|49|NZ_CP021162|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 3, identity: 0.939

gccggtgtccagcccaaacgcagtcgtaccaatgcctgcggaggtggaa	CRISPR spacer
gccgatgtccagccaaaacgcagtcgtaccaatgcctgcggaggtggat	Protospacer
****.********* *********************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1157073 : 1197780

Enterobacteria_phage(28.3%)

coat,capsid,terminase,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110108179.1\|1157073_1157313_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	2.4e-27	71.8
WP_165835087.1\|1157290_1157962_-	hypothetical protein	M1F3E2	Salmonella_phage	1.4e-43	47.8
WP_110108810.1\|1157958_1158417_-	AP2 domain-containing protein	A0A142IE12	Pseudomonas_phage	2.3e-26	46.3
WP_110108180.1\|1158619_1158838_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.1e-15	60.6
WP_110108181.1\|1158929_1159160_-	hypothetical protein	S4TRP7	Salmonella_phage	6.5e-06	39.7
WP_045357106.1\|1159156_1159378_-	hypothetical protein	NA	NA	NA	NA
WP_006176198.1\|1159374_1159593_-	hypothetical protein	NA	NA	NA	NA
WP_110108182.1\|1159589_1161503_-	phage N-6-adenine-methyltransferase	A0A1B0V7P0	Salmonella_phage	5.9e-116	48.3
WP_110108183.1\|1161499_1161652_-	DUF1317 family protein	T1SAR0	Salmonella_phage	2.8e-05	44.2
WP_110108184.1\|1161648_1162077_-	regulator	G8C7S8	Escherichia_phage	2.2e-71	95.1
WP_110108185.1\|1162085_1162568_-	siphovirus Gp157 family protein	G8C7S9	Escherichia_phage	5.5e-79	98.1
WP_110108186.1\|1162564_1163479_-	DNA recombinase	G8C7T0	Escherichia_phage	3.2e-168	97.7
WP_110108187.1\|1163488_1163767_-	host nuclease inhibitor GamL	A0A0P0ZFG3	Escherichia_phage	3.1e-34	77.4
WP_110108188.1\|1163774_1164746_-	hypothetical protein	M9P0E1	Enterobacteria_phage	6.7e-84	98.2
WP_110108189.1\|1164816_1165026_-	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	8.2e-32	91.3
WP_165835088.1\|1165022_1165181_-	hypothetical protein	M9NZI5	Enterobacteria_phage	2.6e-22	100.0
WP_110108190.1\|1165177_1165687_-	hypothetical protein	G8C7T4	Escherichia_phage	1.1e-88	97.0
WP_110108191.1\|1165846_1166284_-	hypothetical protein	K7P7N6	Enterobacteria_phage	1.4e-76	97.2
WP_110108192.1\|1166785_1167139_-	hypothetical protein	NA	NA	NA	NA
WP_110108193.1\|1167163_1167802_-	LexA family transcriptional regulator	K7PH71	Enterobacterial_phage	1.6e-94	78.2
WP_032676295.1\|1167906_1168122_+	helix-turn-helix transcriptional regulator	K7PMD5	Enterobacterial_phage	1.7e-27	81.7
WP_110108194.1\|1168152_1168698_+	hypothetical protein	G8C7U3	Escherichia_phage	2.1e-79	82.3
WP_015571544.1\|1168787_1168934_+	hypothetical protein	NA	NA	NA	NA
WP_047748420.1\|1168926_1169826_+	hypothetical protein	A0A0N7C1Z7	Escherichia_phage	1.4e-80	55.0
WP_110108195.1\|1169815_1171249_+	AAA family ATPase	Q716D2	Shigella_phage	1.8e-231	87.1
WP_110108196.1\|1171248_1171548_+	protein ren	M1FPD5	Enterobacteria_phage	7.4e-18	53.7
WP_110108197.1\|1171544_1172081_+	hypothetical protein	A0A0F6N6A6	Escherichia_phage	1.5e-05	35.2
WP_110108198.1\|1172077_1172305_+	hypothetical protein	NA	NA	NA	NA
WP_110108199.1\|1172301_1172670_+	hypothetical protein	NA	NA	NA	NA
WP_110108200.1\|1173328_1173583_+	hypothetical protein	A0A1B0V7L5	Salmonella_phage	1.0e-07	45.6
WP_023330682.1\|1173728_1174010_+	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	3.2e-23	53.8
WP_110108201.1\|1174220_1174670_+	recombination protein NinB	I6R9D0	Salmonella_phage	2.5e-33	47.5
WP_110108202.1\|1174662_1174833_+	hypothetical protein	K7P7K0	Enterobacteria_phage	4.5e-20	89.3
WP_110108203.1\|1174829_1175498_+	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.9e-122	91.9
WP_110108204.1\|1175490_1176132_+	NinG family protein	M9NYX8	Enterobacteria_phage	2.7e-105	93.9
WP_058671429.1\|1176128_1176329_+	hypothetical protein	NA	NA	NA	NA
WP_110108205.1\|1176428_1177118_+	antiterminator	I6PDF8	Cronobacter_phage	1.3e-57	53.6
WP_064138273.1\|1177850_1178075_+\|lysis	lysis protein	M9NZI9	Enterobacteria_phage	2.0e-31	90.5
WP_110108206.1\|1178052_1178547_+	lysozyme	M9P0E5	Enterobacteria_phage	1.6e-89	96.3
WP_110108207.1\|1178543_1179005_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	8.7e-50	70.6
WP_110108208.1\|1179039_1179312_+	hypothetical protein	K7P6G5	Enterobacteria_phage	6.7e-26	67.8
WP_110108209.1\|1179462_1179681_+	hypothetical protein	NA	NA	NA	NA
WP_110108210.1\|1179677_1179884_+	hypothetical protein	NA	NA	NA	NA
WP_110108211.1\|1179887_1180538_+	hypothetical protein	G8C7P2	Escherichia_phage	1.1e-111	97.7
WP_110108212.1\|1180534_1182097_+\|terminase	terminase	G8C7P3	Escherichia_phage	1.3e-302	92.5
WP_165835094.1\|1182125_1183583_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	5.2e-157	61.6
WP_110108214.1\|1183509_1184520_+\|capsid	minor capsid protein	F1C5D8	Cronobacter_phage	2.7e-112	67.3
WP_094312733.1\|1184520_1184868_-	hypothetical protein	NA	NA	NA	NA
WP_110108215.1\|1184920_1186291_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.8e-122	51.9
WP_110108216.1\|1186290_1186752_+	hypothetical protein	R9TR06	Aeromonas_phage	2.2e-29	47.6
WP_110108217.1\|1186748_1187804_+\|coat	phage coat protein	A0A291AXD4	Shigella_phage	1.2e-102	53.8
WP_032668716.1\|1187836_1188070_+	hypothetical protein	NA	NA	NA	NA
WP_045332637.1\|1188072_1188453_+	hypothetical protein	F1C5E2	Cronobacter_phage	3.1e-29	55.3
WP_045341957.1\|1188452_1188626_+	hypothetical protein	Q5G8X7	Enterobacteria_phage	5.1e-11	47.4
WP_110108218.1\|1188625_1188982_+	hypothetical protein	G0ZNE2	Cronobacter_phage	2.7e-27	56.4
WP_032652844.1\|1188984_1189353_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.6e-46	77.0
WP_110108219.1\|1189349_1189733_+	hypothetical protein	F1C5E4	Cronobacter_phage	1.1e-37	60.6
WP_110108220.1\|1189797_1190577_+	hypothetical protein	F1C5E5	Cronobacter_phage	1.2e-54	62.4
WP_110108221.1\|1190637_1191309_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.7e-49	46.9
WP_110108222.1\|1191350_1193684_+	tape measure protein	A0A1B1W284	Salmonella_phage	2.0e-150	51.2
WP_045344867.1\|1193694_1193922_+	hypothetical protein	NA	NA	NA	NA
WP_023300373.1\|1193963_1194467_+	hypothetical protein	F1C5F0	Cronobacter_phage	2.5e-82	85.0
WP_015571561.1\|1194466_1194937_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.0e-66	80.1
WP_110108223.1\|1194950_1195316_+	C40 family peptidase	F1C5F2	Cronobacter_phage	3.3e-60	86.6
WP_110108224.1\|1195302_1197780_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.8

DBSCAN-SWA_2

1835917 : 1884683

Enterobacterial_phage(30.19%)

tail,tRNA,integrase,head,holin,capsid,terminase,portal

attL 1831742:1831756|attR 1891714:1891728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1831742:1831756	attL	NA	NA	NA	NA
WP_022650816.1\|1835917_1836418_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_006809195.1\|1836637_1837780_-\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.4e-93	49.0
WP_022650818.1\|1837754_1838018_-	hypothetical protein	NA	NA	NA	NA
WP_058687783.1\|1838053_1838323_-	hypothetical protein	M9NZE4	Enterobacteria_phage	6.5e-13	86.7
WP_058687784.1\|1838333_1838597_-	hypothetical protein	A0A220NQU8	Salmonella_phage	4.3e-38	85.1
WP_096928926.1\|1838599_1839121_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	1.7e-49	84.7
WP_058687785.1\|1839107_1840130_-	hypothetical protein	K7PKM7	Enterobacterial_phage	2.7e-168	90.4
WP_058687786.1\|1840129_1840543_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.1e-51	81.6
WP_058687787.1\|1840816_1841008_-	hypothetical protein	NA	NA	NA	NA
WP_032634713.1\|1841348_1842005_-	LexA family transcriptional regulator	K7PLZ5	Enterobacterial_phage	7.9e-121	98.6
WP_032634882.1\|1842104_1842302_+	hypothetical protein	K7PHB1	Enterobacterial_phage	1.4e-28	96.9
WP_032634711.1\|1842327_1842798_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.4e-74	92.9
WP_072203184.1\|1843038_1843245_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.8e-13	67.3
WP_058687708.1\|1843207_1844134_+	transcriptional regulator	K7PLZ7	Enterobacterial_phage	4.9e-68	83.4
WP_058687709.1\|1844130_1844625_+	hypothetical protein	NA	NA	NA	NA
WP_058687710.1\|1844624_1845377_+	hypothetical protein	M1FN76	Enterobacteria_phage	2.0e-136	90.0
WP_058687711.1\|1845381_1846047_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	5.6e-98	78.8
WP_023293907.1\|1846043_1846271_+	hypothetical protein	NA	NA	NA	NA
WP_023305906.1\|1846267_1846588_+	hypothetical protein	K7PHB4	Enterobacterial_phage	1.9e-43	77.4
WP_058687712.1\|1846584_1846974_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.9e-66	96.0
WP_045332650.1\|1846989_1847715_+	antirepressor	G0ZND1	Cronobacter_phage	2.2e-55	52.7
WP_058687713.1\|1847711_1848701_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	1.2e-178	89.1
WP_053504493.1\|1848713_1849292_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.3e-46	53.9
WP_015570939.1\|1849513_1849939_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	6.6e-60	84.4
WP_017384388.1\|1849935_1850091_+	DUF3927 family protein	S4TRP5	Salmonella_phage	5.0e-10	68.8
WP_023296244.1\|1850201_1850588_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	1.2e-52	89.8
WP_063419965.1\|1850574_1850856_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-20	48.4
WP_058687714.1\|1850855_1851485_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	3.5e-102	88.5
WP_058685277.1\|1851492_1851762_+	hypothetical protein	G8C7W1	Escherichia_phage	3.2e-28	80.5
WP_058687715.1\|1852750_1853617_+	hypothetical protein	NA	NA	NA	NA
WP_087654025.1\|1853810_1854635_+	hypothetical protein	K7PH02	Enterobacteria_phage	2.9e-19	77.4
WP_032667396.1\|1854647_1854875_+	hypothetical protein	NA	NA	NA	NA
WP_059443714.1\|1854891_1856349_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	4.6e-270	90.3
WP_063159276.1\|1856360_1856696_+	hypothetical protein	NA	NA	NA	NA
WP_058687853.1\|1856649_1856907_-	hypothetical protein	K7P7V5	Enterobacteria_phage	2.7e-32	95.1
WP_059443713.1\|1857072_1857666_+	hypothetical protein	S4TR53	Salmonella_phage	5.1e-95	79.7
WP_072203232.1\|1857658_1858027_+	HNH endonuclease	S4TTG9	Salmonella_phage	5.9e-57	87.7
WP_000954404.1\|1858132_1858627_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
WP_088566981.1\|1858623_1860285_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.7
WP_058687880.1\|1860343_1862278_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	93.5
WP_048243836.1\|1862480_1863839_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	4.6e-256	97.8
WP_048243841.1\|1863835_1864879_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	9.7e-89	77.8
WP_048243843.1\|1864875_1865202_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	1.9e-46	86.1
WP_048243845.1\|1865210_1865561_+\|head	phage head closure protein	S4TND9	Salmonella_phage	6.8e-55	93.1
WP_058687881.1\|1865557_1866007_+	HK97 gp10 family phage protein	K7PH84	Enterobacterial_phage	3.8e-74	97.3
WP_048243848.1\|1866003_1866351_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.1e-56	94.8
WP_048243850.1\|1866405_1866876_+\|tail	phage tail protein	A0A220NRQ0	Escherichia_phage	9.7e-81	98.1
WP_110108321.1\|1866930_1867332_+\|tail	phage tail protein	K7P7C2	Enterobacteria_phage	2.9e-65	94.7
WP_032622502.1\|1867355_1867619_+	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	2.7e-40	93.1
WP_058687882.1\|1867654_1870936_+\|tail	phage tail tape measure protein	A0A220NRN7	Escherichia_phage	0.0e+00	93.8
WP_058687883.1\|1870938_1871277_+\|tail	phage tail protein	K7PHL4	Enterobacterial_phage	1.5e-62	98.2
WP_023305932.1\|1871273_1872032_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	6.5e-143	95.6
WP_045347509.1\|1872033_1872744_+	peptidase P60	K7PGV2	Enterobacterial_phage	6.5e-145	97.5
WP_032622495.1\|1872776_1873124_+	hypothetical protein	Q5G8W9	Enterobacteria_phage	1.5e-06	47.3
WP_072203234.1\|1873130_1873466_+	hypothetical protein	Q6UAW3	Klebsiella_phage	5.6e-22	48.6
WP_110108322.1\|1874173_1877755_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	91.6
WP_058687885.1\|1877756_1878722_+	hypothetical protein	G1CSU0	Cronobacter_virus	2.2e-58	39.9
WP_165835090.1\|1878781_1879918_+\|tail	tail fiber domain-containing protein	K7P6X7	Enterobacteria_phage	2.6e-71	77.5
WP_063619166.1\|1880298_1882278_+	acyltransferase	C6ZR20	Salmonella_phage	8.9e-67	31.0
WP_045329653.1\|1882817_1883138_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.5e-27	56.6
WP_023299884.1\|1883399_1884683_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3
1891714:1891728	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2452872 : 2514734

Escherichia_phage(23.4%)

tail,tRNA,plate,integrase,holin,terminase

attL 2501289:2501304|attR 2515656:2515671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071785691.1\|2452872_2453073_+\|integrase	tyrosine-type recombinase/integrase	A0A0U2JGI6	Escherichia_phage	1.1e-20	71.7
WP_110108420.1\|2454175_2454493_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.5e-21	48.1
WP_110108422.1\|2455031_2457011_-	acyltransferase	C6ZR20	Salmonella_phage	1.7e-65	30.7
WP_110108423.1\|2457391_2458528_-\|tail	tail fiber domain-containing protein	K7P6X7	Enterobacteria_phage	1.4e-72	79.6
WP_017382566.1\|2458586_2458820_-	hypothetical protein	E4WL42	Enterobacteria_phage	3.9e-30	78.9
WP_110108424.1\|2458927_2459599_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	9.9e-87	73.1
WP_110108425.1\|2459599_2459914_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	68.6
WP_110108426.1\|2459956_2463508_-\|tail	phage tail protein	Q9MCU0	Escherichia_phage	0.0e+00	87.7
WP_110108427.1\|2463560_2464184_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	2.1e-54	57.4
WP_110108428.1\|2464271_2464931_-	hypothetical protein	NA	NA	NA	NA
WP_110108429.1\|2464968_2465682_-	peptidase P60	K7PJV6	Enterobacteria_phage	6.8e-126	84.1
WP_110108430.1\|2465683_2466439_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	5.0e-119	79.2
WP_110108431.1\|2466435_2466783_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	2.9e-37	63.5
WP_063149549.1\|2466844_2467201_-	hypothetical protein	NA	NA	NA	NA
WP_110108432.1\|2467321_2470234_-\|tail	phage tail tape measure protein	I6PCW3	Cronobacter_phage	3.1e-153	38.7
WP_032618388.1\|2470230_2470545_-	hypothetical protein	I6PD79	Cronobacter_phage	5.1e-17	66.7
WP_110108433.1\|2470541_2470853_-	hypothetical protein	I6PDG2	Cronobacter_phage	5.3e-35	67.0
WP_049136381.1\|2470918_2471590_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	2.6e-50	47.7
WP_110108434.1\|2471658_2472069_-	hypothetical protein	I6PDJ8	Cronobacter_phage	2.5e-32	51.4
WP_110108435.1\|2472065_2472650_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.2e-48	53.7
WP_110108436.1\|2472651_2473002_-	hypothetical protein	I6PD77	Cronobacter_phage	1.6e-32	57.8
WP_047363536.1\|2473003_2473486_-	hypothetical protein	A0A2I7RR81	Vibrio_phage	5.1e-08	31.3
WP_165835095.1\|2473522_2473822_-	hypothetical protein	NA	NA	NA	NA
WP_110108437.1\|2473803_2474757_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.6e-133	75.0
WP_022651278.1\|2474768_2475539_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	6.3e-69	59.6
WP_110108438.1\|2475619_2476717_-	hypothetical protein	I6PD76	Cronobacter_phage	2.3e-117	57.9
WP_110108439.1\|2476718_2478107_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.5e-124	49.9
WP_110108440.1\|2478108_2479416_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.3e-143	57.5
WP_058659700.1\|2479393_2480392_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	1.1e-38	43.4
WP_032645635.1\|2480438_2480888_-	hypothetical protein	NA	NA	NA	NA
WP_032645710.1\|2482608_2482884_-	hypothetical protein	G8C7W1	Escherichia_phage	3.7e-32	84.4
WP_058652917.1\|2482891_2483521_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	4.6e-102	87.6
WP_022651286.1\|2483520_2483802_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
WP_015570936.1\|2483788_2484175_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	3.2e-45	78.1
WP_110108442.1\|2484960_2485152_-	hypothetical protein	NA	NA	NA	NA
WP_110108443.1\|2485677_2486511_-	antitermination protein	K7PKS8	Enterobacteria_phage	2.8e-123	78.3
WP_032645711.1\|2486507_2486870_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	5.2e-50	83.1
WP_110108444.1\|2487077_2487680_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	4.4e-94	82.0
WP_022651294.1\|2488068_2488293_-	DinI family protein	H6WRY5	Salmonella_phage	1.8e-21	62.3
WP_022651295.1\|2488663_2489110_-	VOC family protein	NA	NA	NA	NA
WP_058674972.1\|2489596_2490778_+	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_014832179.1\|2491642_2492092_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_110108445.1\|2492368_2493055_-	phage replication protein	G8C7U6	Escherichia_phage	1.2e-82	63.0
WP_165835091.1\|2493051_2493969_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	5.5e-112	72.0
WP_110108447.1\|2494053_2494596_-	regulator	M9NZI6	Enterobacteria_phage	1.6e-82	85.6
WP_110108448.1\|2494625_2494877_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	9.9e-16	53.3
WP_110108449.1\|2495004_2495697_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.1e-59	53.3
WP_110108450.1\|2495710_2496085_-	hypothetical protein	NA	NA	NA	NA
WP_046885673.1\|2496662_2497154_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	5.3e-13	29.3
WP_110108451.1\|2497657_2500795_+	exodeoxyribonuclease	K7P6V4	Enterobacteria_phage	0.0e+00	62.8
WP_110108452.1\|2500804_2501890_+	recombinase RecT	K7PKR8	Enterobacteria_phage	7.4e-124	63.6
2501289:2501304	attL	NA	NA	NA	NA
WP_020882485.1\|2501928_2502171_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	1.3e-33	93.6
WP_014884030.1\|2502235_2502448_+	DUF1233 family excisionase	A0A0U2RY08	Escherichia_phage	4.3e-20	64.8
WP_110108453.1\|2502449_2503688_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.5e-170	70.5
WP_003856923.1\|2503737_2504673_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.0e-142	95.7
WP_110108454.1\|2504716_2506090_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.6e-51	31.9
WP_015570430.1\|2506147_2506300_-	hypothetical protein	NA	NA	NA	NA
WP_023324756.1\|2506574_2507558_-	zinc transporter ZntB	NA	NA	NA	NA
WP_022651306.1\|2507648_2508779_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
WP_110108456.1\|2509095_2509584_-	hypothetical protein	NA	NA	NA	NA
WP_058663422.1\|2509612_2510929_-	hypothetical protein	NA	NA	NA	NA
WP_058663421.1\|2510952_2511408_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_032648436.1\|2511407_2511953_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_110108457.1\|2511930_2513016_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_110108458.1\|2512979_2514734_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
2515656:2515671	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2990903 : 2997181

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110108543.1\|2990903_2991440_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-51	59.6
WP_045341336.1\|2991443_2992322_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.9e-107	64.5
WP_045617132.1\|2992374_2993274_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	9.7e-29	35.0
WP_032659367.1\|2993273_2994359_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	3.7e-99	51.5
WP_017383282.1\|2994718_2995615_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.8e-43	42.2
WP_110108544.1\|2995789_2997181_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.8e-19	32.3

DBSCAN-SWA_5

3435508 : 3514652

Salmonella_phage(70.83%)

tail,tRNA,plate,integrase,head,lysis,capsid,terminase,portal

attL 3480450:3480499|attR 3514861:3514910

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045894642.1\|3435508_3436246_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_003860725.1\|3436378_3437707_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-48	33.5
WP_003860727.1\|3437759_3438143_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.1e-33	71.8
WP_045349762.1\|3438458_3439148_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.8e-54	51.6
WP_022651671.1\|3439187_3440273_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_003860733.1\|3440477_3440897_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-13	37.2
WP_003860734.1\|3440967_3441666_+	DTW domain-containing protein	NA	NA	NA	NA
WP_023325080.1\|3441701_3444365_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_026094276.1\|3444474_3445830_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003860739.1\|3445876_3446200_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_003860741.1\|3446196_3447504_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.7e-43	29.6
WP_006811623.1\|3447655_3448108_-	DUF4385 domain-containing protein	M4QHR1	Cyanophage	3.9e-34	50.0
WP_003863168.1\|3453640_3456214_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_003863167.1\|3456343_3457075_-	polyphenol oxidase	NA	NA	NA	NA
WP_023314684.1\|3457071_3458052_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_003863164.1\|3458183_3458921_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003863162.1\|3459188_3459530_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100229775.1\|3459635_3459683_+	hypothetical protein	NA	NA	NA	NA
WP_110108611.1\|3459790_3460951_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_023323575.1\|3460947_3461820_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_022649060.1\|3461880_3463002_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_110108612.1\|3463012_3464083_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	3.4e-89	51.5
WP_023323612.1\|3464295_3464670_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_003863149.1\|3464823_3465360_+	YfiR family protein	NA	NA	NA	NA
WP_110108614.1\|3465352_3466573_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.2e-05	39.8
WP_047654140.1\|3466585_3467071_+	OmpA family protein	NA	NA	NA	NA
WP_110108616.1\|3467073_3468444_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_045346112.1\|3468482_3468887_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|3469019_3469367_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_058659737.1\|3469410_3470178_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_003863136.1\|3470209_3470749_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3470764_3471013_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_003863132.1\|3471129_3472491_-	signal recognition particle protein	NA	NA	NA	NA
WP_020883913.1\|3472582_3473449_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_026094274.1\|3473468_3474755_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003863126.1\|3474807_3475401_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_003863124.1\|3475523_3476402_+	NAD(+) kinase	NA	NA	NA	NA
WP_045337470.1\|3476487_3478149_+	DNA repair protein RecN	NA	NA	NA	NA
WP_071524123.1\|3478123_3478306_+	hypothetical protein	NA	NA	NA	NA
WP_003863121.1\|3478287_3478626_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_003863119.1\|3478687_3478975_-	RnfH family protein	NA	NA	NA	NA
WP_006811645.1\|3478964_3479441_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003863115.1\|3479558_3480041_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.8e-29	46.8
3480450:3480499	attL	NA	NA	NA	NA
WP_045334934.1\|3480611_3480830_-	levansucrase regulator	Q53ZE7	Salmonella_virus	5.7e-36	94.4
WP_110108618.1\|3480898_3481999_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.6e-182	91.5
WP_045356110.1\|3481995_3482481_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.0e-72	91.9
WP_110108620.1\|3482483_3485924_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	72.0
WP_007848878.1\|3485916_3486036_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_014884889.1\|3486050_3486353_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.1e-40	90.0
WP_007848874.1\|3486407_3486923_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
WP_007848866.1\|3486932_3488105_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.5e-210	92.8
WP_110108621.1\|3488185_3488743_-	recombinase family protein	A0A1S6L009	Salmonella_phage	5.9e-85	87.2
WP_032665794.1\|3489289_3489763_-\|tail	phage tail protein	F1BUP0	Erwinia_phage	6.6e-53	59.6
WP_110108622.1\|3491246_3491852_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	2.3e-111	93.5
WP_110108623.1\|3491844_3492753_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.6e-143	90.4
WP_110108660.1\|3492739_3493099_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.9e-53	89.8
WP_033487479.1\|3493095_3493674_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.6e-104	96.4
WP_110108661.1\|3493794_3494898_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	1.9e-18	27.7
WP_110108662.1\|3494900_3495386_+	hypothetical protein	NA	NA	NA	NA
WP_110108663.1\|3495406_3495856_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.4e-52	73.9
WP_110108664.1\|3495848_3496280_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.5e-67	86.7
WP_110108666.1\|3496375_3496804_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.4e-56	82.9
WP_110108667.1\|3496800_3497316_-	lysozyme	E5G6N1	Salmonella_phage	4.5e-71	75.3
WP_110108668.1\|3497296_3497512_-	hypothetical protein	E5G6N0	Salmonella_phage	4.4e-20	64.8
WP_110108669.1\|3497515_3497719_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	2.5e-33	98.5
WP_110115476.1\|3497718_3498183_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_110108670.1\|3498276_3498927_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.1e-111	96.3
WP_110108671.1\|3498930_3500013_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.4e-185	94.6
WP_110108672.1\|3500029_3500863_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.5e-111	83.4
WP_110108673.1\|3501005_3502772_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.4
WP_110108674.1\|3502771_3503806_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.2e-173	90.7
WP_110108675.1\|3503808_3504513_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_110108676.1\|3506252_3508646_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.7
WP_110108677.1\|3508642_3509494_-	DNA adenine methylase	E5G6L8	Salmonella_phage	4.8e-118	71.6
WP_110108678.1\|3509490_3509718_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.4e-21	66.7
WP_110108679.1\|3509717_3509945_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	1.6e-17	65.3
WP_110108680.1\|3510012_3510354_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.5e-46	82.3
WP_110108681.1\|3510317_3510518_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	2.1e-24	78.5
WP_110108682.1\|3510525_3511035_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	6.0e-84	92.9
WP_032636666.1\|3511067_3511310_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	4.0e-38	97.5
WP_110108683.1\|3511429_3512062_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.1e-106	91.9
WP_110108684.1\|3512063_3513089_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.6e-187	93.2
WP_110108685.1\|3513109_3513892_+	hypothetical protein	NA	NA	NA	NA
WP_110108686.1\|3513884_3514652_+	FAD-dependent thymidylate synthase	A0A0E3T7Y3	Gordonia_phage	2.5e-25	34.0
3514861:3514910	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021163

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2236 : 57892

Escherichia_phage(33.33%)

transposase,integrase

attL 6080:6110|attR 66288:66318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000050481.1\|2236_3778_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001749993.1\|4242_5151_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.5e-77	52.3
WP_001749994.1\|5242_5887_-	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA	NA	NA
6080:6110	attL	NA	NA	NA	NA
WP_000679427.1\|6117_6465_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|6458_7298_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|7425_7926_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|8432_9197_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|9457_10672_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_072094655.1\|10705_12109_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_001749967.1\|12520_12727_-	hypothetical protein	NA	NA	NA	NA
WP_071549088.1\|12731_13244_-	restriction endonuclease	NA	NA	NA	NA
WP_020324562.1\|13268_13973_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_001039463.1\|14735_15122_+	hypothetical protein	NA	NA	NA	NA
WP_000861580.1\|15130_15322_+	hypothetical protein	NA	NA	NA	NA
WP_000807690.1\|16319_17075_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
WP_094686392.1\|18741_19923_-	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_032621004.1\|21239_22286_+	hypothetical protein	NA	NA	NA	NA
WP_032413492.1\|22282_24091_+	ATP-binding protein	NA	NA	NA	NA
WP_000493378.1\|24715_25066_+	hypothetical protein	NA	NA	NA	NA
WP_000129823.1\|25116_25860_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|25856_26633_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000764642.1\|26690_26948_-	hypothetical protein	NA	NA	NA	NA
WP_032409716.1\|27076_27181_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|27715_28582_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000339857.1\|28938_29208_-	hypothetical protein	NA	NA	NA	NA
WP_000368714.1\|29622_30828_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000064120.1\|30827_31802_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_004118291.1\|31883_33155_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_000776034.1\|33154_33586_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_004178082.1\|33991_35479_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_001776122.1\|35948_36914_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-58	42.7
WP_001776120.1\|37393_37825_+	hypothetical protein	NA	NA	NA	NA
WP_001776119.1\|37857_38385_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
WP_001166628.1\|38644_39100_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004200999.1\|39171_39537_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|39552_39828_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|39855_40281_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|40319_42005_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|42022_42388_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|42384_42621_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|42604_42724_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|42686_42899_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|43024_43585_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_015344976.1\|43587_46539_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_046788546.1\|46547_46949_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|47033_47738_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|48662_49547_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|49763_50978_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_000743213.1\|51251_51476_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|51472_52210_-	recombinase family protein	NA	NA	NA	NA
WP_020324562.1\|52841_53546_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_000113282.1\|53557_54214_-	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA
WP_108996614.1\|54309_55494_+	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA
WP_000842134.1\|55588_56698_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	30.2
WP_020324562.1\|57187_57892_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
66288:66318	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021162

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021163

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection