CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021165	Klebsiella pneumoniae strain 203 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG,WYL,RT	0	0	7	0
NZ_CP021166	Klebsiella pneumoniae strain 203 plasmid p203, complete sequence	0 crisprs	csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021165_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021165_1

2018774-2018869

Orphan

Consensus_repeat	Method
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021165_1

>merge|NZ_CP021165|1|2018774-2018869|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>NZ_CP021165|1|1|2018774-2018869|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTA
GCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021165.1\|WP_002910097.1\|2026384_2029060_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP021165.1\|WP_032103886.1\|2029137_2029323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021165.1\|WP_002910105.1\|2023626_2024529_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP021165.1\|WP_004151854.1\|2019967_2020810_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP021165.1\|WP_072093171.1\|2020852_2021323_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_CP021165.1\|WP_029884525.1\|2010612_2014356_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP021165.1\|WP_002910107.1\|2022415_2023429_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NZ_CP021165.1\|WP_071081327.1\|2010332_2010446_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021165.1\|WP_002910193.1\|2014352_2015888_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP021165.1\|WP_002910198.1\|2006067_2006718_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP021165.1\|WP_002910189.1\|2016594_2017272_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_CP021165.1\|WP_002910103.1\|2024650_2025058_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_CP021165.1\|WP_002910191.1\|2015884_2016595_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP021165.1\|WP_004175568.1\|2008818_2010207_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP021165.1\|WP_004175566.1\|2006728_2008507_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_CP021165.1\|WP_002910108.1\|2021423_2022326_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NZ_CP021165.1\|WP_002910100.1\|2025619_2026237_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP021165.1\|WP_032431930.1\|2017268_2018165_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP021165.1\|WP_004152249.1\|2018272_2018716_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP021165.1\|WP_004145401.1\|2025480_2025612_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021165.1\|WP_002910097.1\|2026384_2029060_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP021165.1\|WP_002910105.1\|2023626_2024529_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP021165.1\|WP_072093171.1\|2020852_2021323_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	3.29241e-106
NZ_CP021165.1\|WP_004151854.1\|2019967_2020810_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
NZ_CP021165.1\|WP_029884525.1\|2010612_2014356_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP021165.1\|WP_002910107.1\|2022415_2023429_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NZ_CP021165.1\|WP_002910193.1\|2014352_2015888_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP021165.1\|WP_002910198.1\|2006067_2006718_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
NZ_CP021165.1\|WP_002910189.1\|2016594_2017272_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
NZ_CP021165.1\|WP_002910103.1\|2024650_2025058_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
NZ_CP021165.1\|WP_002910191.1\|2015884_2016595_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83
NZ_CP021165.1\|WP_004175568.1\|2008818_2010207_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP021165.1\|WP_004175566.1\|2006728_2008507_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_CP021165.1\|WP_002910108.1\|2021423_2022326_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NZ_CP021165.1\|WP_002910100.1\|2025619_2026237_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
NZ_CP021165.1\|WP_032431930.1\|2017268_2018165_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.52737e-16
NZ_CP021165.1\|WP_004152249.1\|2018272_2018716_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32

>NZ_CP021165.1|WP_004152249.1|2018272_2018716_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>NZ_CP021165.1|WP_032431930.1|2017268_2018165_-|DMT-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVADVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELTPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>NZ_CP021165.1|WP_002910189.1|2016594_2017272_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>NZ_CP021165.1|WP_002910191.1|2015884_2016595_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>NZ_CP021165.1|WP_002910193.1|2014352_2015888_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>NZ_CP021165.1|WP_029884525.1|2010612_2014356_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCMGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_CP021165.1|WP_071081327.1|2010332_2010446_+|hypothetical-protein
MGLPVKWLYPLIPPLLTNPGEALLFEVKIIKKQHVKK
>NZ_CP021165.1|WP_004175568.1|2008818_2010207_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>NZ_CP021165.1|WP_004175566.1|2006728_2008507_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>NZ_CP021165.1|WP_002910198.1|2006067_2006718_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_CP021165.1|WP_004151854.1|2019967_2020810_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_CP021165.1|WP_072093171.1|2020852_2021323_-|YchJ-family-protein
MEAVLSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>NZ_CP021165.1|WP_002910108.1|2021423_2022326_+|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>NZ_CP021165.1|WP_002910107.1|2022415_2023429_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>NZ_CP021165.1|WP_002910105.1|2023626_2024529_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>NZ_CP021165.1|WP_002910103.1|2024650_2025058_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>NZ_CP021165.1|WP_004145401.1|2025480_2025612_-|hypothetical-protein
MTPIKVFYRGDDCTIFYAHSRAFSRGIVAKLKGLQTERIKKMN
>NZ_CP021165.1|WP_002910100.1|2025619_2026237_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>NZ_CP021165.1|WP_002910097.1|2026384_2029060_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>NZ_CP021165.1|WP_032103886.1|2029137_2029323_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS

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Crispr_ID: NZ_CP021165_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021165_2

4352309-4352403

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021165_2

>merge|NZ_CP021165|2|4352309-4352403|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP021165|2|2|4352309-4352403|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021165.1\|WP_002888340.1\|4352544_4354170_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP021165.1\|WP_029602512.1\|4362947_4363427_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP021165.1\|WP_002888323.1\|4361465_4361843_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP021165.1\|WP_004219851.1\|4339355_4339526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021165.1\|WP_002888348.1\|4349402_4350062_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP021165.1\|WP_002888332.1\|4354890_4355718_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP021165.1\|WP_004145972.1\|4338524_4339370_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP021165.1\|WP_004177431.1\|4361847_4362696_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP021165.1\|WP_002888329.1\|4358363_4359650_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP021165.1\|WP_002888337.1\|4354159_4354858_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP021165.1\|WP_004178574.1\|4346483_4349390_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP021165.1\|WP_023342999.1\|4343938_4346296_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP021165.1\|WP_002888347.1\|4350136_4350676_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP021165.1\|WP_002888324.1\|4360641_4361463_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP021165.1\|WP_004177424.1\|4341427_4342930_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP021165.1\|WP_002888327.1\|4359655_4360645_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP021165.1\|WP_016531719.1\|4343067_4343763_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP021165.1\|WP_009309220.1\|4363600_4365466_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP021165.1\|WP_002888345.1\|4350855_4352220_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP021165.1\|WP_012737392.1\|4339707_4341417_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221

Protein	Function_ID	Function_description	E-value
NZ_CP021165.1\|WP_002888340.1\|4352544_4354170_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP021165.1\|WP_029602512.1\|4362947_4363427_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	9.80354e-127
NZ_CP021165.1\|WP_002888323.1\|4361465_4361843_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP021165.1\|WP_002888348.1\|4349402_4350062_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP021165.1\|WP_002888332.1\|4354890_4355718_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP021165.1\|WP_004145972.1\|4338524_4339370_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP021165.1\|WP_004177431.1\|4361847_4362696_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP021165.1\|WP_002888329.1\|4358363_4359650_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP021165.1\|WP_002888337.1\|4354159_4354858_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP021165.1\|WP_004178574.1\|4346483_4349390_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP021165.1\|WP_023342999.1\|4343938_4346296_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP021165.1\|WP_002888347.1\|4350136_4350676_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP021165.1\|WP_002888324.1\|4360641_4361463_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP021165.1\|WP_004177424.1\|4341427_4342930_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP021165.1\|WP_002888327.1\|4359655_4360645_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP021165.1\|WP_016531719.1\|4343067_4343763_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP021165.1\|WP_009309220.1\|4363600_4365466_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP021165.1\|WP_002888345.1\|4350855_4352220_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP021165.1\|WP_012737392.1\|4339707_4341417_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0

>NZ_CP021165.1|WP_002888345.1|4350855_4352220_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP021165.1|WP_002888347.1|4350136_4350676_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP021165.1|WP_002888348.1|4349402_4350062_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP021165.1|WP_004178574.1|4346483_4349390_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP021165.1|WP_023342999.1|4343938_4346296_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP021165.1|WP_016531719.1|4343067_4343763_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP021165.1|WP_004177424.1|4341427_4342930_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP021165.1|WP_012737392.1|4339707_4341417_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP021165.1|WP_004219851.1|4339355_4339526_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP021165.1|WP_004145972.1|4338524_4339370_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP021165.1|WP_002888340.1|4352544_4354170_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP021165.1|WP_002888337.1|4354159_4354858_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP021165.1|WP_002888332.1|4354890_4355718_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP021165.1|WP_002888329.1|4358363_4359650_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP021165.1|WP_002888327.1|4359655_4360645_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP021165.1|WP_002888324.1|4360641_4361463_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP021165.1|WP_002888323.1|4361465_4361843_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP021165.1|WP_004177431.1|4361847_4362696_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP021165.1|WP_029602512.1|4362947_4363427_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVHWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP021165.1|WP_009309220.1|4363600_4365466_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGAAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAEAILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVACGVLIGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQMGRSAFAVLLFQDIAAIPLVAMIPLLAASGGATSLMAFALSALKVAAALALVVVLGRYLTRPLLRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVTHPLRIVILLVGFLAIKMLMLWLIARPLGVPRAQRRWFAVLLGQGSEFAFVVFGAARMADVLDGEWAKALTLAVALSMAATPILLVLLTRLEKSSSGQARDADEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVILDHDPDHVDTLRKFDMKVFYGDATRVDLLESAGAEKAEVLINAIDDPHVSLELVARVKEHFPHLQIISRARDVDHYIQLRQAGVEAPERETFEAALKSGRMTLEALGLGAYEARERADLFRRFNLQMVEEMVAMAENDAASRVAVFKRTSDMLTGIINEDRHHLSLVQRHGWQGTEEGRHTGDIADEPENKPSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1668811 : 1675716

Planktothrix_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1668811_1669675_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_064146014.1\|1669685_1670459_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_004151134.1\|1670699_1671596_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1671838_1673200_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1673518_1674241_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_085834426.1\|1674237_1675716_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

1714981 : 1733370

Escherichia_phage(35.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040212092.1\|1714981_1716361_+	hypothetical protein	K4MM73	Escherichia_phage	2.0e-118	48.9
WP_040212094.1\|1716549_1717956_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.4e-36	27.8
WP_004189145.1\|1718178_1719243_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
WP_004175258.1\|1719269_1720139_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_004175259.1\|1720170_1721061_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_040211008.1\|1721075_1721630_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.1e-51	57.6
WP_040211005.1\|1721810_1722977_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	9.1e-112	53.5
WP_004144151.1\|1723399_1723522_-	small membrane protein	NA	NA	NA	NA
WP_040211003.1\|1723712_1723853_-	hypothetical protein	NA	NA	NA	NA
WP_040211001.1\|1723921_1724926_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	5.2e-31	29.2
WP_110102159.1\|1725765_1726830_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	54.7
WP_004175258.1\|1726843_1727713_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_004175259.1\|1727744_1728635_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_040210998.1\|1728649_1729204_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.1e-51	57.6
WP_110102161.1\|1729290_1729905_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015958259.1\|1729926_1730895_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-180	96.6
WP_015958691.1\|1731215_1732049_+	ABC transporter permease	NA	NA	NA	NA
WP_015958690.1\|1732038_1733370_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-15	29.1

DBSCAN-SWA_3

2640650 : 2650065

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162564671.1\|2640650_2642285_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	7.6e-181	55.5
WP_071081024.1\|2642339_2643593_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2643635_2644724_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|2644810_2645071_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_063864653.1\|2645368_2646229_+	class A beta-lactamase SHV-168	A0A077SL40	Escherichia_phage	2.2e-155	99.0
WP_002210513.1\|2646249_2647011_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_071081025.1\|2647272_2648175_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.9e-159	99.3
WP_071081026.1\|2648186_2649452_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.9e-232	99.3
WP_002210516.1\|2649444_2650065_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

2903572 : 2916026

Klebsiella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048978130.1\|2903572_2904838_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.9e-209	83.4
WP_002901812.1\|2904839_2905259_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004892499.1\|2905808_2906231_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
WP_040210748.1\|2906308_2906857_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	4.3e-88	91.7
WP_110102260.1\|2906950_2908555_+	hypothetical protein	NA	NA	NA	NA
WP_065804472.1\|2908569_2908836_+	hypothetical protein	NA	NA	NA	NA
WP_065804473.1\|2908868_2909123_-	hypothetical protein	K4MPX1	Escherichia_phage	9.7e-19	56.6
WP_048978206.1\|2909129_2910554_-	hypothetical protein	K4MM73	Escherichia_phage	3.9e-173	60.8
WP_065804470.1\|2911627_2914696_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.7
WP_048978112.1\|2914692_2915073_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.3e-64	89.7
WP_023317177.1\|2915082_2915565_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	7.2e-79	90.6
WP_032410253.1\|2915561_2916026_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.3e-53	59.9

DBSCAN-SWA_5

2919710 : 2938884

Pseudomonas_phage(20.83%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048978115.1\|2919710_2920079_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	2.5e-15	42.9
WP_004217333.1\|2920189_2920546_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|2920622_2920829_-	hypothetical protein	NA	NA	NA	NA
WP_004190637.1\|2920966_2921449_-	hypothetical protein	NA	NA	NA	NA
WP_048978110.1\|2921502_2922675_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|2922698_2923091_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_008807839.1\|2923087_2923639_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
WP_023282424.1\|2923640_2924024_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	9.2e-21	45.2
WP_004190646.1\|2924010_2924244_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_032423790.1\|2924253_2924508_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
WP_008807837.1\|2924509_2924905_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
WP_142689607.1\|2924945_2925218_-	hypothetical protein	NA	NA	NA	NA
WP_004190653.1\|2925226_2926180_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_048978109.1\|2926190_2926976_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	7.8e-67	64.4
WP_048978108.1\|2927060_2928173_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	2.8e-110	55.2
WP_048978107.1\|2928156_2929557_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	7.1e-127	52.9
WP_004190663.1\|2929556_2930864_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_032438547.1\|2930841_2931846_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.3e-34	43.5
WP_040244165.1\|2932708_2932954_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.8e-33	95.1
WP_004190672.1\|2933912_2934188_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_048978106.1\|2934184_2934529_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.6e-48	94.7
WP_008807831.1\|2934525_2935065_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.5e-101	99.4
WP_024940884.1\|2935061_2935361_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_040243758.1\|2936013_2936703_-	antiterminator	I6PDF8	Cronobacter_phage	8.4e-57	54.5
WP_023279926.1\|2936699_2936840_-	YlcG family protein	NA	NA	NA	NA
WP_004177081.1\|2936836_2937199_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	2.1e-51	81.5
WP_004146340.1\|2937195_2937486_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.8e-45	89.6
WP_048978105.1\|2937694_2938294_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	6.6e-90	79.4
WP_022631486.1\|2938351_2938573_-	hypothetical protein	NA	NA	NA	NA
WP_004184503.1\|2938650_2938884_-	DinI-like family protein	K7PM44	Enterobacteria_phage	2.9e-25	68.8

DBSCAN-SWA_6

2942436 : 2958530

Salmonella_phage(38.89%)

integrase

attL 2946412:2946426|attR 2957830:2957844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023313099.1\|2942436_2942673_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.9e-33	92.2
WP_004190692.1\|2942665_2942869_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.7e-30	92.5
WP_032416146.1\|2942865_2943651_-	hypothetical protein	C7BGF1	Burkholderia_phage	9.6e-65	53.3
WP_016946299.1\|2943643_2943979_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.4e-11	43.0
WP_023313097.1\|2943971_2944715_-	hypothetical protein	A0A0M3ULE2	Salmonella_phage	5.3e-65	55.2
WP_110102262.1\|2944711_2945638_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.4e-91	60.5
WP_023313095.1\|2945985_2946522_-	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	5.4e-59	67.8
2946412:2946426	attL	NA	NA	NA	NA
WP_023313094.1\|2946524_2946755_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	4.7e-20	63.5
WP_023313093.1\|2946895_2947456_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	2.0e-08	38.3
WP_153932150.1\|2947726_2947957_-	hypothetical protein	NA	NA	NA	NA
WP_020804303.1\|2948250_2948442_+	YebW family protein	NA	NA	NA	NA
WP_023282477.1\|2948450_2948606_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_110102264.1\|2948743_2951878_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	3.7e-293	56.4
WP_048978102.1\|2951890_2953000_+	recombinase RecT	H6WRX0	Salmonella_phage	1.1e-183	86.2
WP_075211454.1\|2953043_2953700_+	hypothetical protein	M1F3E2	Salmonella_phage	3.5e-68	62.7
WP_012542038.1\|2953696_2954005_+	hypothetical protein	I6PD68	Cronobacter_phage	4.2e-24	56.9
WP_004892750.1\|2954012_2954252_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_012542039.1\|2954472_2955690_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	3.3e-120	51.6
WP_023285021.1\|2955836_2956727_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|2956726_2957719_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|2957720_2958530_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
2957830:2957844	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3068964 : 3146253

Escherichia_phage(17.5%)

integrase,plate,tRNA,tail,portal,terminase,capsid,head

attL 3114563:3114576|attR 3143569:3143582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3068964_3069465_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3069581_3070028_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3070011_3070806_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020324105.1\|3070913_3072089_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004224192.1\|3072120_3072813_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|3072958_3073468_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_074185967.1\|3073472_3073811_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|3073800_3074040_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|3074340_3075354_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3075411_3075513_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3075512_3075587_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3075704_3075830_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3075889_3076153_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3076283_3076922_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3077011_3077926_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004148037.1\|3078387_3078507_-	hypothetical protein	NA	NA	NA	NA
WP_004179363.1\|3078587_3079631_-	type II asparaginase	NA	NA	NA	NA
WP_071081084.1\|3079934_3081143_+	HD domain-containing protein	NA	NA	NA	NA
WP_019705575.1\|3081216_3083001_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_021313530.1\|3083007_3083898_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_110102270.1\|3084018_3085527_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_020804938.1\|3085560_3085725_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3085837_3086524_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3086921_3087101_-	hypothetical protein	NA	NA	NA	NA
WP_004183660.1\|3087140_3087773_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3088339_3088537_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3088652_3089663_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3089659_3091066_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3091121_3092009_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3092025_3092532_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3092558_3093053_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3093143_3093329_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3093950_3095144_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3095256_3095484_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004225560.1\|3095637_3095814_+	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|3095933_3096257_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3096249_3096642_+	amino acid-binding protein	NA	NA	NA	NA
WP_060568688.1\|3096638_3097352_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3097624_3097777_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_142294943.1\|3097958_3098522_+	hypothetical protein	NA	NA	NA	NA
WP_040210766.1\|3098779_3099451_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-74	56.4
WP_110102273.1\|3099434_3100307_-	hypothetical protein	NA	NA	NA	NA
WP_040210750.1\|3101669_3102089_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.2e-35	56.7
WP_004892499.1\|3102638_3103061_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
WP_040210748.1\|3103138_3103687_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	4.3e-88	91.7
WP_110102260.1\|3103780_3105385_+	hypothetical protein	NA	NA	NA	NA
WP_065804472.1\|3105399_3105666_+	hypothetical protein	NA	NA	NA	NA
WP_040210540.1\|3105698_3105953_-	hypothetical protein	K4MPX1	Escherichia_phage	9.7e-19	56.6
WP_110102418.1\|3105959_3107384_-	hypothetical protein	K4MM73	Escherichia_phage	5.6e-172	60.4
WP_072042573.1\|3108607_3109669_+	acyltransferase	A0A193GZ69	Enterobacter_phage	3.8e-08	22.8
WP_040210547.1\|3110204_3110888_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	8.4e-33	37.2
WP_085876907.1\|3110884_3112033_-\|plate	baseplate J/gp47 family protein	R9TN81	Rhizobium_phage	4.1e-16	25.6
WP_040210551.1\|3112022_3112472_-	hypothetical protein	A0A0C4UR04	Shigella_phage	3.3e-17	42.1
WP_040210553.1\|3112468_3113050_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_040210554.1\|3113046_3114132_-\|tail	tail protein	Q8SBG7	Shigella_phage	1.4e-37	30.2
WP_110102275.1\|3114128_3115529_-	hypothetical protein	A0A2P9JZK2	Alteromonadaceae_phage	4.0e-05	42.0
3114563:3114576	attL	NA	NA	NA	NA
WP_040210558.1\|3115576_3117430_-	hypothetical protein	A0A172JGI1	Citrobacter_phage	2.0e-20	44.5
WP_040210560.1\|3117571_3117850_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_040210562.1\|3117851_3118223_-\|tail	phage tail protein	NA	NA	NA	NA
WP_040210564.1\|3118226_3119738_-\|tail	tail protein	B5TK67	Pseudomonas_phage	2.0e-103	44.4
WP_040210566.1\|3119734_3119920_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_040210568.1\|3119922_3120468_-	hypothetical protein	NA	NA	NA	NA
WP_032708389.1\|3120464_3120824_-	hypothetical protein	NA	NA	NA	NA
WP_040210572.1\|3120828_3121239_-	hypothetical protein	NA	NA	NA	NA
WP_021543308.1\|3121210_3122260_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	1.2e-51	34.0
WP_040210576.1\|3122358_3122766_-\|head	head decoration protein	NA	NA	NA	NA
WP_040210577.1\|3122765_3123356_-	hypothetical protein	NA	NA	NA	NA
WP_040210580.1\|3123357_3124224_-	S49 family peptidase	A0A248XD65	Klebsiella_phage	1.1e-48	48.1
WP_023281757.1\|3124220_3125855_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	8.1e-90	35.2
WP_000483310.1\|3125854_3126118_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_110102277.1\|3126126_3128253_-\|terminase	terminase	A0A0C5ABH4	Bacteriophage	1.0e-97	34.5
WP_040210585.1\|3128194_3128776_-	hypothetical protein	NA	NA	NA	NA
WP_040210587.1\|3129111_3129387_+	hypothetical protein	A9YWZ2	Burkholderia_phage	3.4e-09	40.7
WP_040210589.1\|3129583_3130222_-	hypothetical protein	NA	NA	NA	NA
WP_040210591.1\|3130322_3130856_-	hypothetical protein	NA	NA	NA	NA
WP_040210595.1\|3131098_3131488_-	hypothetical protein	Q8SBD9	Shigella_phage	7.2e-21	45.2
WP_040210597.1\|3131484_3132009_-	lysozyme	Q71TF3	Escherichia_phage	8.4e-49	53.6
WP_048964767.1\|3131992_3132313_-	hypothetical protein	O64361	Escherichia_phage	3.1e-22	51.1
WP_040210598.1\|3132472_3132712_-	hypothetical protein	NA	NA	NA	NA
WP_080847807.1\|3132861_3133440_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_040210601.1\|3133453_3134434_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	9.9e-136	67.5
WP_110102279.1\|3134435_3134813_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.1e-46	74.2
WP_040210605.1\|3134822_3135632_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	5.9e-110	68.5
WP_110102281.1\|3135628_3136543_-	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	59.6
WP_072042575.1\|3136499_3136712_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.1e-15	70.9
WP_040188690.1\|3136949_3137402_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.5e-67	87.8
WP_040188689.1\|3137436_3137634_-	hypothetical protein	K7PHB1	Enterobacterial_phage	3.0e-23	84.6
WP_040188688.1\|3137733_3138390_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	1.5e-108	88.1
WP_032437708.1\|3138734_3139034_+	hypothetical protein	K7PJS4	Enterobacterial_phage	8.5e-14	48.6
WP_040210612.1\|3139033_3139819_+	hypothetical protein	C7BGF1	Burkholderia_phage	7.6e-62	51.8
WP_004202047.1\|3139946_3140291_+	hypothetical protein	NA	NA	NA	NA
WP_072037881.1\|3140690_3140963_+	hypothetical protein	K7PKM4	Enterobacterial_phage	2.2e-13	47.1
WP_000089156.1\|3140992_3141229_+	excisionase	NA	NA	NA	NA
WP_040210615.1\|3141218_3142361_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	2.9e-171	81.4
WP_004150800.1\|3142473_3143724_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
3143569:3143582	attR	NA	NA	NA	NA
WP_004150801.1\|3143964_3144615_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150802.1\|3144631_3145090_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3145146_3146253_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6064 : 45861

Escherichia_phage(39.13%)

integrase,transposase

attL 1931:1990|attR 28933:39054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1931:1990	attL	NA	NA	NA	NA
WP_001067855.1\|6064_6769_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001288432.1\|7087_8521_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_004098817.1\|8554_9769_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|10029_10794_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|10936_11203_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|11423_11897_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_000845048.1\|12052_13066_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|13611_14316_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840321.1\|14459_15014_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|15144_15975_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_001067855.1\|16606_17311_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|17856_18870_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|19025_19499_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|19719_19986_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|20128_20893_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|21153_22368_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|22401_23835_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001067855.1\|24153_24858_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001393253.1\|27736_28069_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|28115_28991_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_000608644.1\|29246_30509_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001235713.1\|31072_31630_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|31812_32673_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001120891.1\|32882_33422_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000480968.1\|33393_34230_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|34229_35033_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|35093_35909_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|36238_36415_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001067855.1\|37460_38165_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001334766.1\|38796_39627_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
28933:39054	attR	NA	NA	NA	NA
WP_063840321.1\|39757_40312_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001067855.1\|40455_41160_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001445937.1\|41540_42497_+	hypothetical protein	NA	NA	NA	NA
WP_011977825.1\|42523_42685_+	hypothetical protein	NA	NA	NA	NA
WP_000176305.1\|42681_43293_-	DUF2913 family protein	NA	NA	NA	NA
WP_001568067.1\|43346_43628_-	hypothetical protein	NA	NA	NA	NA
WP_011977766.1\|43800_44136_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_001067855.1\|45156_45861_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

148478 : 157585

uncultured_Caudovirales_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009309887.1\|148478_148790_+	hypothetical protein	K7PKY8	Enterobacterial_phage	2.1e-15	40.0
WP_001549890.1\|149286_149619_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004118521.1\|149615_150338_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
WP_001549888.1\|150395_150824_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_001549887.1\|150873_152157_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549886.1\|152252_152606_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549885.1\|153089_154568_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_004118529.1\|154586_155414_+	universal stress protein	NA	NA	NA	NA
WP_001549953.1\|155485_156682_-	MFS transporter	NA	NA	NA	NA
WP_004118534.1\|157210_157585_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021165

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection