CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029653	Staphylococcus aureus strain AR_0470 chromosome, complete genome	12 crisprs	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,cas3,DEDDh,DinG,WYL	5	13	13	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029653_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_1

61276-62170

TypeIII

Consensus_repeat	Method
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	PILER-CR
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	CRISPRCasFinder
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	CRT

12 spacers

cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6

The CRISPR arrays of NZ_CP029653_1

>merge|NZ_CP029653|1|61276-62170|PILER-CR,CRISPRCasFinder,CRT
GATCGATAACTACCCCGAATAACAGGGGACGAGAATACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTGGATCGATAACTACCCCGAATAACAGGGGACGAGAATTCTATAAGTTCATTAATTCCGATACCTAGATTATCTGATCGATAACTACCCCGAATAACAGGGGACGAGAATTTTTTTCCACCCTTTCAGATCATCTATGATCTTGGATCGATAACTACCCCGAATAACAGGGGACGAGAATTCTGTAATGTATTCATTTAATGTAATCATAATTTTTTCGATCGATAACTACCCCGAATAACAGGGGACGAGAATTAGACCATTTACCTCATTATATTTATAGTCTTTATTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATTTTTCTTTAACTGTTTTTACTGCCCATTTAATAGTGATCGATAACTACCCCGAATAACAGGGGACGAGAATATAAACCCGTTCAATTCGTTATCTTTAAATTCTTGGATCGATAACTACCCCGAATAACAGGGGACGAGAATACAACTTCGTCATCTTTCATCATTTCTCTTACATCAGATCGATAACTACCCCGAATAACAGGGGACGAGAATATATTTCTTCCATGAATAACACCCTCCTTTTTTCTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATAAGTTAACGGCATTACCTAATAAAAATATTTTAGGGATCGATAACTACCCCGAATAACAGGGGACGAGAACTCATCTTTCATGTCACTGATTAATTCATTTGTAGATCGATAACTACCCCGAATAACAGGGGACGAGAACGGTAATAGTTGCTCAATAGGTAATAAAACGTCGGTGATCGATAACTATCCCGAATAACAGGGGACAGAGTGT

>NZ_CP029653|1|1|61276-62097|PILER-CR
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TTCTATAAGTTCATTAATTCCGATACCTAGATTATCT
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TTTTTTTCCACCCTTTCAGATCATCTATGATCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TTCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TTAGACCATTTACCTCATTATATTTATAGTCTTTATTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TTTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TACAACTTCGTCATCTTTCATCATTTCTCTTACATCA
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	TAAGTTAACGGCATTACCTAATAAAAATATTTTAGG
GATCGATAACTACCCCGAATAACAGGGGACGAGAA	CTCATCTTTCATGTCACTGATTAATTCATTTGTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAA

>NZ_CP029653|1|1|61276-62170|CRISPRCasFinder
GATCGATAACTACCCCGAATAACAGGGGACGAGAATA	CTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	CTATAAGTTCATTAATTCCGATACCTAGATTATCT
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	TTTTTCCACCCTTTCAGATCATCTATGATCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	CTGTAATGTATTCATTTAATGTAATCATAATTTTTTC
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	AGACCATTTACCTCATTATATTTATAGTCTTTATTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAATT	TTTCTTTAACTGTTTTTACTGCCCATTTAATAGT
GATCGATAACTACCCCGAATAACAGGGGACGAGAATA	TAAACCCGTTCAATTCGTTATCTTTAAATTCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAATA	CAACTTCGTCATCTTTCATCATTTCTCTTACATCA
GATCGATAACTACCCCGAATAACAGGGGACGAGAATA	TATTTCTTCCATGAATAACACCCTCCTTTTTTCTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAATA	AGTTAACGGCATTACCTAATAAAAATATTTTAGG
GATCGATAACTACCCCGAATAACAGGGGACGAGAACT	CATCTTTCATGTCACTGATTAATTCATTTGTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAACG	GTAATAGTTGCTCAATAGGTAATAAAACGTCGGT
GATCGATAACTATCCCGAATAACAGGGGACAGAGTGT

>NZ_CP029653|1|1|61276-62169|CRT
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	TCTATAAGTTCATTAATTCCGATACCTAGATTATCT
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	TTTTTTCCACCCTTTCAGATCATCTATGATCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	TAGACCATTTACCTCATTATATTTATAGTCTTTATTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	AAGTTAACGGCATTACCTAATAAAAATATTTTAGG
GATCGATAACTACCCCGAATAACAGGGGACGAGAAC	TCATCTTTCATGTCACTGATTAATTCATTTGTA
GATCGATAACTACCCCGAATAACAGGGGACGAGAAC	GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT
GATCGATAACTATCCCGAATAACAGGGGACAGAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000676592.1\|56993_58673_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP029653.1\|WP_000281076.1\|63147_63453_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NZ_CP029653.1\|WP_001024805.1\|59193_59505_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368760
NZ_CP029653.1\|WP_000608705.1\|70022_70757_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP029653.1\|WP_110183795.1\|72611_73049_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP029653.1\|WP_001015575.1\|55152_56769_+\|primase	unknown	unknown	gnl\|CDD\|225913
NZ_CP029653.1\|WP_000865879.1\|68757_70026_+\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
NZ_CP029653.1\|WP_000655859.1\|62242_63148_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP029653.1\|WP_072093071.1\|60550_60862_-\|DUF3387-domain-containing-protein	unknown	unknown	gnl\|CDD\|378743
NZ_CP029653.1\|WP_000286998.1\|66169_66814_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP029653.1\|WP_001015193.1\|60037_60259_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000283873.1\|53682_54792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237876
NZ_CP029653.1\|WP_000208937.1\|66824_67733_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP029653.1\|WP_000175888.1\|58761_59100_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368749
NZ_CP029653.1\|WP_000599362.1\|65742_66168_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
NZ_CP029653.1\|WP_001038847.1\|51499_53488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000359017.1\|63466_65740_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP029653.1\|WP_000153149.1\|67735_68758_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP029653.1\|WP_001092190.1\|59519_60023_+\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|226783
NZ_CP029653.1\|WP_001058155.1\|54784_55153_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000676592.1\|56993_58673_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	6.7072e-34
NZ_CP029653.1\|WP_000281076.1\|63147_63453_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	4.06918e-22
NZ_CP029653.1\|WP_001024805.1\|59193_59505_+\|hypothetical-protein	gnl\|CDD\|368760	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960). This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.	6.74747e-26
NZ_CP029653.1\|WP_000608705.1\|70022_70757_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.10684e-15
NZ_CP029653.1\|WP_110183795.1\|72611_73049_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.98542e-46
NZ_CP029653.1\|WP_000359017.1\|63466_65740_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP029653.1\|WP_000865879.1\|68757_70026_+\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	1.16357e-132
NZ_CP029653.1\|WP_000655859.1\|62242_63148_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.00185e-113
NZ_CP029653.1\|WP_072093071.1\|60550_60862_-\|DUF3387-domain-containing-protein	gnl\|CDD\|378743	pfam11867, DUF3387, Domain of unknown function (DUF3387). This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.	4.08117e-39
NZ_CP029653.1\|WP_000286998.1\|66169_66814_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.36094e-106
NZ_CP029653.1\|WP_001015575.1\|55152_56769_+\|primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	3.31891e-21
NZ_CP029653.1\|WP_000283873.1\|53682_54792_+\|hypothetical-protein	gnl\|CDD\|237876	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional.	1.53397e-08
NZ_CP029653.1\|WP_000208937.1\|66824_67733_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	3.0078e-40
NZ_CP029653.1\|WP_000175888.1\|58761_59100_+\|hypothetical-protein	gnl\|CDD\|368749	pfam06106, SAUGI, S. aureus uracil DNA glycosylase inhibitor. Uracil-DNA glycosylase inhibitors, are DNA mimic proteins that prevent the DNA binding sites of UDGs (Uracil DNA glycosylase) from interacting with their DNA substrate. SSP0047 (SAUGI; for Staphylococcus aureus uracil-DNA glycosylase inhibitor) acts as a uracil-DNA glycosylase inhibitor that breaks the uracil-removing activity of S. aureus uracil-DNA glycosylase (SAUDG) pfam03167. The SAUGI/SAUDG complex has been determined, and shows that SAUGI binds to the SAUDG DNA binding region via several strong interactions, by using a hydrophobic pocket to hold SAUDG's protruding residue (i.e. SAUDG Leu184, E. coli UDG Leu191 and B. subtilis UDG Phe191). By binding to SAUDG in this way, SAUGI thus prevents SAUDG from binding to its DNA substrate and performing DNA repair activity.	8.57061e-38
NZ_CP029653.1\|WP_000599362.1\|65742_66168_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	7.59929e-21
NZ_CP029653.1\|WP_000153149.1\|67735_68758_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.06095e-17
NZ_CP029653.1\|WP_001092190.1\|59519_60023_+\|DUF1643-domain-containing-protein	gnl\|CDD\|226783	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown].	1.3268e-79

>NZ_CP029653.1|WP_072093071.1|60550_60862_-|DUF3387-domain-containing-protein
MLSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLRNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFLRCFSFT
>NZ_CP029653.1|WP_001015193.1|60037_60259_+|hypothetical-protein
MNHETTHSDWRTVANCLASQNYISIVKGLVHHFTAIEDEEILDKIYEDFMNNGSITTVLNNDLQDIINYYLSK
>NZ_CP029653.1|WP_001092190.1|59519_60023_+|DUF1643-domain-containing-protein
MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKPVCTVITMYPHLDGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAISESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNDIMHPLNPKARQKWILK
>NZ_CP029653.1|WP_001024805.1|59193_59505_+|hypothetical-protein
MNINRYITRGISEQLSLDLQILLWHMVEEKDNQPHTDYLHIFKLQEDDNMLSITHEQEQPAYKLEYHYINYEKNQNALPKKVYVIREDDVDVFYYVMLLPEEY
>NZ_CP029653.1|WP_000175888.1|58761_59100_+|hypothetical-protein
MTLSKQLKTYITERFKLNYQETWACETIDAVAEDVLPEKYIKNSPLEHKILNTFTYYNDELHEISIYPFLCYLDKELVAIGYLDNFDLDFIFLNDTHQIIIDERYLLQKGGE
>NZ_CP029653.1|WP_000676592.1|56993_58673_+|recombinase-family-protein
MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRPAMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASGEVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDENEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRFNNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYLRGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERVINVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLELFLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFSVYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNFVINVTKKNRIENLSLLPLF
>NZ_CP029653.1|WP_001015575.1|55152_56769_+|primase
MNHILEMLIKLLKVGMEAIDRKGLIAILTSSIGNDEMDDSEQAVMVYNELIDKLQLNIPKDVDYRPNIYSYFGIQKKPNDTILVEMMICIFHIKRFDSELFVFKDKGWQKVSEDELQGLISKMIQVLLVDYKPSLSTLKNVVDGIQKSTDIEKLVEHRQYIGCGRNMFNLKTFKVVDNDLEIFPKTRLDLELDINDTITDKIPPNFKQYMLELANYDHDLQYFLFQHMAVLLTADTKLRRGLFLYGTAKNGKSVYIKLVKSFFYSNDIVSKTLNELGGRFDKESLIGKRIMASDEVGKANIDEATVNDFKKLLSVEPIHADRKGRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKLQDEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLNFGYEFVSSKSANIAHQKACINLLRKLIEIKPGSRIKVSRLNEVIRDEIKVSSQVINDLVQANFNVQSRLNNGYKYWVDLGWKETDKKDDMISFDKNENVTDDEFLYEDDLNLGWEDFDDE
>NZ_CP029653.1|WP_001058155.1|54784_55153_+|hypothetical-protein
MNNDRGKSLQIPQSTLLKEGSIYVATLHSVYEKNFSGDIKHQFTYEVELNQETHYVNRNITVKSMSHQLSIADWIKRHSNYNVNHINYDPYIDRKHLVLVGQYNGNYYIQDVAPLDEFGGVL
>NZ_CP029653.1|WP_000283873.1|53682_54792_+|hypothetical-protein
MYQANIRDLITKLPQSNKTEHFLMNKFSNQDKVQQLQRQISQQLDQQYNELLANEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLFDRLDQSLNGTNRLYTQLSLIGTRTHRITTKRFNVQGLPKLVQQMILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDALLRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKVIEFKEQVEKYKTMPTPYGIEHDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEKKTFKIIVPIHDAIMIECNDKGIAQNVAQLMKDTANQLFNGEFAHVTVEALGGIDNE
>NZ_CP029653.1|WP_001038847.1|51499_53488_+|hypothetical-protein
MNKNITALKSTENTTYMQYTVHIDDQIINNIKECTKKFKILPMEDKIPLSPLLQPEYAGEVQDFISTYEQFMINFGKVILDSQGIKIQFESESLSSIQRGIQEHCYLNERTNDIDVTKEWYLCKFSNQILEEDKNQLYNALKQLMNDSKNKKQAFQEVFKVHIDIYLYNKEKSEYKYQVSSYFNLVKENPKITYKKRHLQEKQGVKGTTFTNKLKLLNKMYGVDVAKYQPFYNSNNPEYERGQFGERYISQRSNYEFNRLQYQIIDMLSKILDKHPLPKSDNNYKHIPTIEKAILSGDSHSFYEYFEDIMKEIISMENSSLKEKLLTDFTYQSQCRWYSESEKLKLQLESFMHKVLESNYYEGNKLYRMLSHAIEETINEADEDKVHFNYFKDYFLTDGGVKNWEQISEKITEFNGKVINDIQNEYNKIQFNNANRNQKLNFNYLYHCFEFSNNLVKARVNGNRGYILYFVDKYKIKMPFLDQLLINYLNQEIGQESINYNMQTLFEKERYDRSSTIEKLVATSKFKYEKDDSDLFKQLFNDVENSIDRLGIYLLNNGINSNDENARYYRSFLKELSRIKSKLTPFSLEISKSSGREQHYPDDAIDDKDERRKNKEETYHAFDDKSDIDSKLKNKINVSIDNLLSVKIKSNLYDISPNTKKQ
>NZ_CP029653.1|WP_000655859.1|62242_63148_+|type-II-CRISPR-associated-endonuclease-Cas1
MKDVIYVENHYFVTVKENSIKFRNVIDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIFCDKKHSPLTQLISSYGMTHRLQRIQSQFQLSGRTRDRIWKKIVVNKIINQSKCLENNLHNENVKLLVNLAKDVSSGDKSNKEAQAARIYFKDLYGKQFKRGRYNDIINSGLNYGYSILRSFIKKELALHGFEMSLGINHRSKENPFNLADDIIEVFRPFVDNIVYEIVFKKNINTFDVNEKKLLLNVLYEKCIIDKKVVRLLDSVKIVIQSLIRCYEENTPTYLLLPKMIEVGN
>NZ_CP029653.1|WP_000281076.1|63147_63453_+|CRISPR-associated-endonuclease-Cas2
MYLLVSFDLPRDTKFERRVASKYRTRLLELGFSMKQFSLYERYVSDVQKKDKILEILQQEIPDTGSITLYVLPDEVNNSQITILGKEVKVVVRKEPKLIFL
>NZ_CP029653.1|WP_000359017.1|63466_65740_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDKKTTLMYGSLLHDIGKIIYRSNDHAFARGTHSKLGYNFLSQFSEFKDNEVLDSIAYHHYKELAKANLANDNTAYITYIADNIASGIDRRDVIEEGDEEYEKQAFNFDKYTPLYSVFNIVNSEKLKQISGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSYDLEHKLSIKEDTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFTKYENTKEFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLEIMLEVIVDQLLEKLELTRANLLYTGGGHAYLLVSNTDKGKEKINQFNTELKNWFMSEFTTDLSLSIAFEKCSGNDLMNTSGNYRNIWRNVSSKLSDIKAHKYSSEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFDKFISVIDYEEAERLAQNNNHIRIYSKNKPYIGVGISTNLWMCDYDYASQNKDMREKGIGSYVEREEGIKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEVSVYINEKFKDFTLGKLTMSAGVGMFSGKYPISKMAFETGLLEEAAKTDEKNQIALWVQEKVYNWDEFKKYILEEKLLVLQHGFSQTDEHGKAFIYKMLALLRNNETINIARLAYLLARSKMTEEFTSKIFNWAQNDKDKNQLITALEYYVYQIREVD
>NZ_CP029653.1|WP_000599362.1|65742_66168_+|type-III-A-CRISPR-associated-protein-Csm2
MILAKTKSGKKIDLTFAHEVVKSNVKTVKDKRGKENQVLFNGLTTSKLRNLMEQVNRLYTIAFNSTEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIQKESKKFFLDYCKYFEALVAYAKYYQKED
>NZ_CP029653.1|WP_000286998.1|66169_66814_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAKHFGLKMKQENHNQDDESVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVENDFENIEKAIHLLENDYLGGGGTRGNGRIQFNDITIETVVGEYDSTNLKIK
>NZ_CP029653.1|WP_000208937.1|66824_67733_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MTTKVFKLSFKTPVHFGKKRLSDGEMTITSDTLFSALFIEALQLGIETDWLLNDLIISDTFPYENEIYYLPKPLIKIESKEEGNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFSIGHFSLQTKVSLSAQEIDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDQLKDIMTSLQYSGLGGKRNAGYGQFEYEIINNQQLFKLLNQNGEHSILLSTAMAKEDEIKSALKEARYILNKRSGFIQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDVFNVGHNGKHPVYRYAKPLWLEV
>NZ_CP029653.1|WP_000153149.1|67735_68758_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTIKNYEVVIKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNILDTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWKAFVSYSEKVNQGKKYGNIRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTALVSKYNNEKNTDVYSKIKVSDSEPIDERHLAIYQKIDINKSEKPMPLYRECVDVDTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGMPDVLNQNILFLGAGAGFVSKTTHYQLKSREQAKRDSFDILTKKFRRTYGKMKEMPSNVPVALKGTTNQSLHVSYQQGMCKISFQELNNEVL
>NZ_CP029653.1|WP_000865879.1|68757_70026_+|type-III-A-CRISPR-associated-protein-Csm6
MKVLFSPIGNSDPWSNDRDGAMLHIVRHYKPDVVVLFFTESIWNGNRNIPGRKNFDWENIVSKVSSRTKVDIKVDSIKYENDFDSYKDIFHFYINEIRTKYSDAEILLNVTSGTPQMESTLCLEYISNPHNMKCIQVSTPAPIEGPKRSFAKLETVTEDLNKVNANEKMASNRSKSINIISFREVMVRSQIKSLVNNYDYEGALNLVSDQKSFRNGKLLRKRLLELTNQIKTHEVFPEINDKYRSVALKKSLFHYLLLNMRYNRLDVAETLIRVKSIAEFILKTYIVGHWPTLIIEKDDKPYLNAEDNLSFIYKYKLLLEKRRQNLDVSRILGLPAFIDILTVLEPNSKLLKEVNAVNDINGLRNSIAHNLETLDLDKNKNYKKIMLSVEAIKNMLHISFPEIEEKDYNYFERKNKEFRELL
>NZ_CP029653.1|WP_000608705.1|70022_70757_+|CRISPR-associated-endoribonuclease-Cas6
MINKITVELDLPDSIRFQYLGSILHGVLMDYLPNDIADQLHHEFAYSPLKQRIYHKNKKVIWEIVCMSDRLFNEIAELFTSKNRLFLKYYQVYIEIYSFNIEKVNVQNIMNQLLETEELNRYVRINIQTPMSFKYQSNYMIFPEVKRFFRSIMIQFDAFFEEYKMYDKETLDFLEKNINIVDYKLKSTRFNLEKVKIPSFTGEIVFKIKGPLPFLQLTHFLLKFGEFSGSGMKTSLGMGKYSII
>NZ_CP029653.1|WP_110183795.1|72611_73049_-|signal-peptidase-II
MIAVIVLIIDQLWKSAIVKWMEIGQTIPLWEGVFHITSLRNKGAAFGILQGQRWFFIIVTLIVVLGIIYYLQTEGRNNRQISFALSLLLGGALGNFFDRLIRGEVIDSLDFRLIDYPIFNLADVFIVSGVALMILEVLLQSKKYS

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Crispr_ID: NZ_CP029653_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_2

70892-71139

TypeIII

Consensus_repeat	Method
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG	CRISPRCasFinder
ATTCGATAACTACCNCCGTAGAAGAGGGGACGAG	CRT

3 spacers

cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,csa3

The CRISPR arrays of NZ_CP029653_2

>merge|NZ_CP029653|2|70892-71139|CRISPRCasFinder,CRT
ATTCGATAACTACCCCGTAGAAGAGGGGACGAGAACTCTTCTAAGACGCGATATGATTCTAATTGGTCTTCATTCGATAACTACCCCCGTAGAAGAGGGGACGAGAACTGATATACTCCTTTACCATGTATTAATTCTGGACCACTATTCGATAACTACCCCGTAGAAGAGGGGACGAGAACTCATATTCGATCGTGTATATCAAAACTTTATGCATTCGATAACTACCCCGTAGAAGAGGGGACGAG

>NZ_CP029653|2|2|70892-71139|CRISPRCasFinder
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG	AACTCTTCTAAGACGCGATATGATTCTAATTGGTCTTCA
TTCGATAACTACCCCCGTAGAAGAGGGGACGAG	AACTGATATACTCCTTTACCATGTATTAATTCTGGACCACT
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG	AACTCATATTCGATCGTGTATATCAAAACTTTATGC
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG

>NZ_CP029653|2|2|70892-71139|CRT
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG	AACTCTTCTAAGACGCGATATGATTCTAATTGGTCTTC
ATTCGATAACTACCCCCGTAGAAGAGGGGACGA	GAACTGATATACTCCTTTACCATGTATTAATTCTGGACCACT
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG	AACTCATATTCGATCGTGTATATCAAAACTTTATGC
ATTCGATAACTACCCCGTAGAAGAGGGGACGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000281076.1\|63147_63453_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NZ_CP029653.1\|WP_000608705.1\|70022_70757_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP029653.1\|WP_110183795.1\|72611_73049_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP029653.1\|WP_162564164.1\|80730_82152_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP029653.1\|WP_000359017.1\|63466_65740_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP029653.1\|WP_000153149.1\|67735_68758_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP029653.1\|WP_057504658.1\|73876_74644_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP029653.1\|WP_000655859.1\|62242_63148_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP029653.1\|WP_110183799.1\|83550_84225_-\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP029653.1\|WP_072093071.1\|60550_60862_-\|DUF3387-domain-containing-protein	unknown	unknown	gnl\|CDD\|378743
NZ_CP029653.1\|WP_000286998.1\|66169_66814_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP029653.1\|WP_110183796.1\|74900_77075_+\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319845
NZ_CP029653.1\|WP_049374230.1\|82379_83042_+\|CadD-family-cadmium-resistance-transporter	unknown	unknown	gnl\|CDD\|129861
NZ_CP029653.1\|WP_000208937.1\|66824_67733_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP029653.1\|WP_000599362.1\|65742_66168_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
NZ_CP029653.1\|WP_000163428.1\|84507_85854_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP029653.1\|WP_002503923.1\|78630_80310_-\|IS1182-like-element-ISSep1-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP029653.1\|WP_000865879.1\|68757_70026_+\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
NZ_CP029653.1\|WP_110183797.1\|77355_78534_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP029653.1\|WP_057504659.1\|73221_73623_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|236654

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000281076.1\|63147_63453_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	4.06918e-22
NZ_CP029653.1\|WP_000608705.1\|70022_70757_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.10684e-15
NZ_CP029653.1\|WP_110183795.1\|72611_73049_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.98542e-46
NZ_CP029653.1\|WP_162564164.1\|80730_82152_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP029653.1\|WP_000359017.1\|63466_65740_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP029653.1\|WP_000153149.1\|67735_68758_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.06095e-17
NZ_CP029653.1\|WP_057504658.1\|73876_74644_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	4.26029e-19
NZ_CP029653.1\|WP_000655859.1\|62242_63148_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.00185e-113
NZ_CP029653.1\|WP_110183799.1\|83550_84225_-\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.98851e-84
NZ_CP029653.1\|WP_072093071.1\|60550_60862_-\|DUF3387-domain-containing-protein	gnl\|CDD\|378743	pfam11867, DUF3387, Domain of unknown function (DUF3387). This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.	4.08117e-39
NZ_CP029653.1\|WP_000286998.1\|66169_66814_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.36094e-106
NZ_CP029653.1\|WP_110183796.1\|74900_77075_+\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319845	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase. CadA from gram-positive Staphylococcus aureus plasmid pI258 is required for full Cd(2+) and Zn(2+) resistance. This subfamily also includes CadA, from the gram-negative bacilli, Stenotrophomonas maltophilia D457R, which is a cadmium efflux pump acquired as part of a cluster of antibiotic and heavy metal resistance genes from gram-positive bacteria. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP029653.1\|WP_049374230.1\|82379_83042_+\|CadD-family-cadmium-resistance-transporter	gnl\|CDD\|129861	TIGR00779, quaternary_amine_transporter, cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, ). [Transport and binding proteins, Amino acids, peptides and amines].	4.16115e-72
NZ_CP029653.1\|WP_000208937.1\|66824_67733_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	3.0078e-40
NZ_CP029653.1\|WP_000599362.1\|65742_66168_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	7.59929e-21
NZ_CP029653.1\|WP_000163428.1\|84507_85854_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.03518e-134
NZ_CP029653.1\|WP_002503923.1\|78630_80310_-\|IS1182-like-element-ISSep1-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.37762e-34
NZ_CP029653.1\|WP_000865879.1\|68757_70026_+\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	1.16357e-132
NZ_CP029653.1\|WP_110183797.1\|77355_78534_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.27216e-20
NZ_CP029653.1\|WP_057504659.1\|73221_73623_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|236654	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional.	4.54809e-17

>NZ_CP029653.1|WP_000608705.1|70022_70757_+|CRISPR-associated-endoribonuclease-Cas6
MINKITVELDLPDSIRFQYLGSILHGVLMDYLPNDIADQLHHEFAYSPLKQRIYHKNKKVIWEIVCMSDRLFNEIAELFTSKNRLFLKYYQVYIEIYSFNIEKVNVQNIMNQLLETEELNRYVRINIQTPMSFKYQSNYMIFPEVKRFFRSIMIQFDAFFEEYKMYDKETLDFLEKNINIVDYKLKSTRFNLEKVKIPSFTGEIVFKIKGPLPFLQLTHFLLKFGEFSGSGMKTSLGMGKYSII
>NZ_CP029653.1|WP_000865879.1|68757_70026_+|type-III-A-CRISPR-associated-protein-Csm6
MKVLFSPIGNSDPWSNDRDGAMLHIVRHYKPDVVVLFFTESIWNGNRNIPGRKNFDWENIVSKVSSRTKVDIKVDSIKYENDFDSYKDIFHFYINEIRTKYSDAEILLNVTSGTPQMESTLCLEYISNPHNMKCIQVSTPAPIEGPKRSFAKLETVTEDLNKVNANEKMASNRSKSINIISFREVMVRSQIKSLVNNYDYEGALNLVSDQKSFRNGKLLRKRLLELTNQIKTHEVFPEINDKYRSVALKKSLFHYLLLNMRYNRLDVAETLIRVKSIAEFILKTYIVGHWPTLIIEKDDKPYLNAEDNLSFIYKYKLLLEKRRQNLDVSRILGLPAFIDILTVLEPNSKLLKEVNAVNDINGLRNSIAHNLETLDLDKNKNYKKIMLSVEAIKNMLHISFPEIEEKDYNYFERKNKEFRELL
>NZ_CP029653.1|WP_000153149.1|67735_68758_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTIKNYEVVIKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNILDTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWKAFVSYSEKVNQGKKYGNIRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTALVSKYNNEKNTDVYSKIKVSDSEPIDERHLAIYQKIDINKSEKPMPLYRECVDVDTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGMPDVLNQNILFLGAGAGFVSKTTHYQLKSREQAKRDSFDILTKKFRRTYGKMKEMPSNVPVALKGTTNQSLHVSYQQGMCKISFQELNNEVL
>NZ_CP029653.1|WP_000208937.1|66824_67733_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MTTKVFKLSFKTPVHFGKKRLSDGEMTITSDTLFSALFIEALQLGIETDWLLNDLIISDTFPYENEIYYLPKPLIKIESKEEGNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFSIGHFSLQTKVSLSAQEIDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDQLKDIMTSLQYSGLGGKRNAGYGQFEYEIINNQQLFKLLNQNGEHSILLSTAMAKEDEIKSALKEARYILNKRSGFIQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDVFNVGHNGKHPVYRYAKPLWLEV
>NZ_CP029653.1|WP_000286998.1|66169_66814_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAKHFGLKMKQENHNQDDESVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVENDFENIEKAIHLLENDYLGGGGTRGNGRIQFNDITIETVVGEYDSTNLKIK
>NZ_CP029653.1|WP_000599362.1|65742_66168_+|type-III-A-CRISPR-associated-protein-Csm2
MILAKTKSGKKIDLTFAHEVVKSNVKTVKDKRGKENQVLFNGLTTSKLRNLMEQVNRLYTIAFNSTEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIQKESKKFFLDYCKYFEALVAYAKYYQKED
>NZ_CP029653.1|WP_000359017.1|63466_65740_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDKKTTLMYGSLLHDIGKIIYRSNDHAFARGTHSKLGYNFLSQFSEFKDNEVLDSIAYHHYKELAKANLANDNTAYITYIADNIASGIDRRDVIEEGDEEYEKQAFNFDKYTPLYSVFNIVNSEKLKQISGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSYDLEHKLSIKEDTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFTKYENTKEFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLEIMLEVIVDQLLEKLELTRANLLYTGGGHAYLLVSNTDKGKEKINQFNTELKNWFMSEFTTDLSLSIAFEKCSGNDLMNTSGNYRNIWRNVSSKLSDIKAHKYSSEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFDKFISVIDYEEAERLAQNNNHIRIYSKNKPYIGVGISTNLWMCDYDYASQNKDMREKGIGSYVEREEGIKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEVSVYINEKFKDFTLGKLTMSAGVGMFSGKYPISKMAFETGLLEEAAKTDEKNQIALWVQEKVYNWDEFKKYILEEKLLVLQHGFSQTDEHGKAFIYKMLALLRNNETINIARLAYLLARSKMTEEFTSKIFNWAQNDKDKNQLITALEYYVYQIREVD
>NZ_CP029653.1|WP_000281076.1|63147_63453_+|CRISPR-associated-endonuclease-Cas2
MYLLVSFDLPRDTKFERRVASKYRTRLLELGFSMKQFSLYERYVSDVQKKDKILEILQQEIPDTGSITLYVLPDEVNNSQITILGKEVKVVVRKEPKLIFL
>NZ_CP029653.1|WP_000655859.1|62242_63148_+|type-II-CRISPR-associated-endonuclease-Cas1
MKDVIYVENHYFVTVKENSIKFRNVIDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIFCDKKHSPLTQLISSYGMTHRLQRIQSQFQLSGRTRDRIWKKIVVNKIINQSKCLENNLHNENVKLLVNLAKDVSSGDKSNKEAQAARIYFKDLYGKQFKRGRYNDIINSGLNYGYSILRSFIKKELALHGFEMSLGINHRSKENPFNLADDIIEVFRPFVDNIVYEIVFKKNINTFDVNEKKLLLNVLYEKCIIDKKVVRLLDSVKIVIQSLIRCYEENTPTYLLLPKMIEVGN
>NZ_CP029653.1|WP_072093071.1|60550_60862_-|DUF3387-domain-containing-protein
MLSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLRNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFLRCFSFT
>NZ_CP029653.1|WP_110183795.1|72611_73049_-|signal-peptidase-II
MIAVIVLIIDQLWKSAIVKWMEIGQTIPLWEGVFHITSLRNKGAAFGILQGQRWFFIIVTLIVVLGIIYYLQTEGRNNRQISFALSLLLGGALGNFFDRLIRGEVIDSLDFRLIDYPIFNLADVFIVSGVALMILEVLLQSKKYS
>NZ_CP029653.1|WP_057504659.1|73221_73623_+|winged-helix-turn-helix-transcriptional-regulator
MSITSINKKEHDLDGIKSRGKDACETFIFDPEKVERRQQEVGQTDGLSQLFKVFADDTRLKIVYALTQEDEMCVCDVATIIGSTNATASHHLRMLRNMGFAEYRKKGKIVFYRLVSNHVHHLMQEALQLKEKK
>NZ_CP029653.1|WP_057504658.1|73876_74644_+|ZIP-family-metal-transporter
MFSWTVVSLVLLTSIANLVGGLIVVRKEWSPKALTYLMAFSAGFLLSIGILDLMPEGLENSPENGIYILIGFLVLFSFQRILTTHFHFGYETHEDKLSKKTGGLGAFIGMTIHSFFDGVSIVAGFEVSSELGFLVFVAVLLHKIPDGLTISSIVLVVFNDRKKAFIASAVLALATIFGGALVWLLSDTEFAAEVLGDSFARIALSFSAGVFLYVAATDLLPVVNQSENRKTGLYVLLGVAVFYIASWIIGVVGLE
>NZ_CP029653.1|WP_110183796.1|74900_77075_+|cadmium-translocating-P-type-ATPase
MSEATKPLEEKYVYRVDGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATIEELEKAGAFENLKVASEKPVRQATQEINQEKEDEKEEKVPFYKKHSTLLYSTLLIVFGYLSVFVNGDENIVTTLLFVASMLIGGLSVFKVGFQNLLRFEFDMKTLMTVAVIGGAIIGEWAEVSVVVILFAISEALERFSMDKARQSIRSIMDIAPKEALVRRKGQEMMVHVDDIAVGDIMIVKPGQKIAMDGMVVSGYSAVNQAAITGESVPVEKAVDDEVFAGTLNEEGLLEVEITKLVEDTTISKIIHLVEEAQGERAPSQAFVEKFAKYYTPIIMIIAALVAVVPPLFFGASWETWVYQGLAVLVVGCPCALVISTPISIVSAIGNAAKKGVLIKGGVYLEEMGALKAIAFDKTGTLTKGVPVVTDFNVLNKQVDENEMLSIITALEYRSQHPLASAIMKRAEEANISYSDVVVDDFSSITGKGIKGTVDGTTYYIGSPKLFKELSNSSFDKNLEKKVATLQNQGKTAMVVGTDKEILAIIAVADEVRESSKEVIQKLHQLGIKNTIMLTGDNKGTANAIGSHVGVKEVQAELMPQDKLDYIKQLKSEYNNVAMIGDGVNDAPALAASTVGIAMGGAGTDTALETADVALMGDDLRKLPFTVKLSRKALNIIKANITFAIAIKFIALLLVIPGWLTLWIAILSDMGATLLVALNSLRLMRVKE
>NZ_CP029653.1|WP_110183797.1|77355_78534_+|IS110-family-transposase
MSKRSSVVAHYKNEKFQKEFFIQNNKNGYNYSLKYLNDLDHPQLIFESTGIYSRSMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTDNLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
>NZ_CP029653.1|WP_002503923.1|78630_80310_-|IS1182-like-element-ISSep1-family-transposase
MYKDYNMTQLTLPMETSVLIPTNDISRHVNDIVETIPETEFDEFRHHRGATSYHPKMMLKVVLYAYTQSVFSGRKIEKLLNDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLFIQFHSQCLKQNLIDDQAIFIDGTKVEANANRYTFVWKKSIQNHESRMNENSKALYHELVINKIIPEIKKDHDNDLTKEEIDLIGSHLDKEIEDLNQHIDNEKCTKIRKQIRLKRTKIKKYKKQINDYSQRKHKYEVQKSILKDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLFYNVYQNPTDTRTMIPFLNTIQETYGHLPEYIVADAGYGSEANYMAIIDNFNRTPLITYGMFIKDKTKKYKSDIFNTQNWDYDEINDEFICPNNKRLGFKRYAYRHDKYGFKRDFKLYECDDCSECPLKQQCMNFNSKTNKKIMKNYNWEYFKAQINKKLSEPKTKTIYSQRKIDVEPVFGFMKAILGFTRMSVRGIDKAKRELGFVLMALNIRKVTAQRAENNQKNNKKDNFYIISIEIVFFYLSWDFMSHTLSYD
>NZ_CP029653.1|WP_162564164.1|80730_82152_+|dihydrolipoyl-dehydrogenase
MTGEVKKDVDLLVIGAGSGGYVAAIRAAQLGKKVVLVDKAELGGVCLNRGCIPSKALISASERVKHIKHANTMGLKVSGEVQVDMPEVVKWKDGIVNKLTDGIRTLLKGNGVEVISGEAYLTEAHIAKIKIEDEEQIFSYKDLILAIGSLPVELKSMPFDQKRIISSTEALQLQEVPNHLVVVGGGYIGLELGTAYAKFGAKVTILEGSDTILSGTDPILTKTVKRHLKEIGITVITDALVQGGENTGDEVNVHVQVDGKEEIIQCDYCLVSIGRKPNTGKIGLENIGVVLDDQGFIKINNKCQTNIEHVYAIGDCAGGDLLAHKASYEAKIAAEVISGQNNVIDFQAMPFVIFSDPEVAYTGLTEKEAKEKGYETVSSRFPFQANARALSVSDADGFVQVVAEKNTKRVLGVQMVGPEVSSLIAEAVFAIEAGANAEDLSLTIHAHPTLPEPLMEAAEGVMGHATHMLNKKQ
>NZ_CP029653.1|WP_049374230.1|82379_83042_+|CadD-family-cadmium-resistance-transporter
MNLILTILSALGSFIVTNVDDIFVLMLLFSQARSQAKTGNSGIVSMESKGNRIYPRDIVIGQYLGFALLVLISLLATFGVTLIPDQWVGLLGLIPIYLGVKLFIKGEDEDEGNILSSLNKFNKFYLSVAFITFANGGDNIGIYVPFFSTLNNNQLIITVVTFFIMVAVWCLIGYRLARFRYVSETLEKYGRWIIPIVFIGLGIYIMVENETFRAILSLVN
>NZ_CP029653.1|WP_110183799.1|83550_84225_-|IS6-family-transposase
MNYFRYKQFNKDVITVAVGYYLRYALSYHDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEIRIMLAS
>NZ_CP029653.1|WP_000163428.1|84507_85854_+|NAD(P)/FAD-dependent-oxidoreductase
MTKKYDLIVIGTGSAGSITAAKCNKAGWNVAMVDDRPFGGTCALRGCDPKKVLHGAAELIDWNKRMVKNGVPSEVSINWKDLMNFKRTFTDDVPEKKEEALNKQGIDTYHGNASFVSEDKLEVNKEVLEGSHFLIASGAKPTPLPIKGEEHLTYSDEFLELDELPQRIVFVGGGYISFEFAHIAARAGSEVHIIHRGQRPLENFDIDLVDILLEKSKEIGIQVHLQHSVESIEKEQGKFHVYARKKEDITRFEADIVIHGAGRVPALDMNLEKGNIERKKHGVHVNEYLQSVSNPNVYAAGDAAATDGLPLTPVASADSHVVASNLLKGNSKKIEYPVIPSAVFTVPKMASVGMSEEEAKNSGRNIKVKQKNISDWFTYKRTNEDFAAFKVLIDEDSDQVVGAHLISNEADELINHFATAIRFGISTKELKQMIFAYPTAASDIAHML

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Crispr_ID: NZ_CP029653_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_3

690151-690243

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_3

>merge|NZ_CP029653|3|690151-690243|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGGTGAAGAGGAACGCAGTTGGATGCTA

>NZ_CP029653|3|3|690151-690243|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CCGCACAACTGCATAAATCCCTCTAATCG
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000169038.1\|699098_699323_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP029653.1\|WP_001826700.1\|690441_691269_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP029653.1\|WP_000365352.1\|692423_693143_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP029653.1\|WP_000808894.1\|680959_681898_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP029653.1\|WP_000901760.1\|689366_690002_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP029653.1\|WP_001222137.1\|694730_695447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000633782.1\|682107_682644_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP029653.1\|WP_001819741.1\|686990_687374_+\|DUF1934-family-protein	unknown	unknown	gnl\|CDD\|226896
NZ_CP029653.1\|WP_000180233.1\|683328_684624_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_CP029653.1\|WP_000362975.1\|693126_693927_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP029653.1\|WP_001788287.1\|684651_685173_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
NZ_CP029653.1\|WP_000735554.1\|694062_694569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001820041.1\|691418_692369_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP029653.1\|WP_000477504.1\|682812_683289_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029653.1\|WP_001200748.1\|685671_686682_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
NZ_CP029653.1\|WP_000882189.1\|679877_680507_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NZ_CP029653.1\|WP_001574632.1\|697976_698906_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
NZ_CP029653.1\|WP_001021140.1\|687370_689032_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP029653.1\|WP_001018677.1\|696653_697028_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP029653.1\|WP_001045416.1\|695615_696404_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000169038.1\|699098_699323_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	3.83351e-14
NZ_CP029653.1\|WP_001826700.1\|690441_691269_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	5.13582e-73
NZ_CP029653.1\|WP_000365352.1\|692423_693143_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	5.71997e-38
NZ_CP029653.1\|WP_000808894.1\|680959_681898_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.14602e-168
NZ_CP029653.1\|WP_000901760.1\|689366_690002_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	2.8784e-92
NZ_CP029653.1\|WP_001018677.1\|696653_697028_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
NZ_CP029653.1\|WP_000633782.1\|682107_682644_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
NZ_CP029653.1\|WP_001819741.1\|686990_687374_+\|DUF1934-family-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
NZ_CP029653.1\|WP_000180233.1\|683328_684624_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.99954e-151
NZ_CP029653.1\|WP_000362975.1\|693126_693927_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.88188e-26
NZ_CP029653.1\|WP_001788287.1\|684651_685173_+\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
NZ_CP029653.1\|WP_001820041.1\|691418_692369_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.07219e-47
NZ_CP029653.1\|WP_000477504.1\|682812_683289_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
NZ_CP029653.1\|WP_001200748.1\|685671_686682_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
NZ_CP029653.1\|WP_000882189.1\|679877_680507_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	2.66874e-44
NZ_CP029653.1\|WP_001574632.1\|697976_698906_-\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	9.03596e-35
NZ_CP029653.1\|WP_001021140.1\|687370_689032_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP029653.1\|WP_001045416.1\|695615_696404_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.25578e-35

>NZ_CP029653.1|WP_000901760.1|689366_690002_+|endonuclease-III-domain-containing-protein
MLGTDELYKLLYRHMGPQNWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIRPSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGELRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYNKLGYENTKSYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNCDFLEPYFKK
>NZ_CP029653.1|WP_001021140.1|687370_689032_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVAAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>NZ_CP029653.1|WP_001819741.1|686990_687374_+|DUF1934-family-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>NZ_CP029653.1|WP_001200748.1|685671_686682_+|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>NZ_CP029653.1|WP_001788287.1|684651_685173_+|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>NZ_CP029653.1|WP_000180233.1|683328_684624_+|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGKIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>NZ_CP029653.1|WP_000477504.1|682812_683289_+|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>NZ_CP029653.1|WP_000633782.1|682107_682644_+|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>NZ_CP029653.1|WP_000808894.1|680959_681898_+|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDDNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVIENIKAADIVLSDDEIQYIDELFPIED
>NZ_CP029653.1|WP_000882189.1|679877_680507_+|DUF443-family-protein
MLCEVIAIYKNPKYRIIKYNDEYLMVNIINNWLVLFIPLLNWLTPKRYIKISQEELENLNTFKPAKNNAFWPALGSSVLFSVTFRKYMPLFNVRLEKTIVIAIFFVVFLGILFFYLNLNRRLALSVFTMNKEKSQKMILLPNLKHFFFIIFAYLYFGGFSFFTLYALITIDVQNIIIFICWGAVTMFFFFINIVPIGIKKAHVILLKKS
>NZ_CP029653.1|WP_001826700.1|690441_691269_+|ABC-transporter-substrate-binding-protein
MKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHEKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>NZ_CP029653.1|WP_001820041.1|691418_692369_+|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQIITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>NZ_CP029653.1|WP_000365352.1|692423_693143_+|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKIDNKGENYGSIY
>NZ_CP029653.1|WP_000362975.1|693126_693927_+|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSEDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTASFINKHHDEKHV
>NZ_CP029653.1|WP_000735554.1|694062_694569_+|hypothetical-protein
MKKLLTASIIACSVVMGVGIANTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>NZ_CP029653.1|WP_001222137.1|694730_695447_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMVMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQTFSLIIWILLVVLVIYFTIRLSSRTRL
>NZ_CP029653.1|WP_001045416.1|695615_696404_+|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVITYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFLSYYLNFLKSVS
>NZ_CP029653.1|WP_001018677.1|696653_697028_-|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>NZ_CP029653.1|WP_001574632.1|697976_698906_-|DMT-family-transporter
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIVLNIFINPDVFSLHFFSNQTFNYTWFVGGLLGVGYLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIIGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSLLASHTHSPAFASLVSFTIGSITLLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTSNIILMPHLGAALTTLIGMFGQILMGILIDHFALFGSPKIAMTSRKTIGLLCILTGIIFLRLF
>NZ_CP029653.1|WP_000169038.1|699098_699323_-|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNIVTEQVARDSMNALVDLNILKSNSGAITKVHSAQIIDKTTTVLFEAKK

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Crispr_ID: NZ_CP029653_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_4

754881-754980

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_4

>merge|NZ_CP029653|4|754881-754980|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACTAAAGGAATACAGTTGATTGCTAATGCACCAACAGCAAAAGAGCCCCTAATTAATAAATTAAAAGGGG

>NZ_CP029653|4|4|754881-754980|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACTAAAGGAATACAGTTGATTGCTAATGCACCAACAGCAA
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_031788497.1\|752818_752935_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000820892.1\|761594_762161_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP029653.1\|WP_001574617.1\|748692_750843_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP029653.1\|WP_000638614.1\|760957_761500_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP029653.1\|WP_001259673.1\|759541_759985_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029653.1\|WP_000687413.1\|753841_754708_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP029653.1\|WP_000367064.1\|754997_756218_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
NZ_CP029653.1\|WP_000731642.1\|746208_747006_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029653.1\|WP_000733427.1\|760051_760441_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000158021.1\|756214_756682_+\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
NZ_CP029653.1\|WP_000532966.1\|751537_752254_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP029653.1\|WP_000842865.1\|758725_759415_-\|DUF1129-family-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001090984.1\|750988_751348_+\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
NZ_CP029653.1\|WP_110183817.1\|756924_758571_+\|IS1182-like-element-ISSau3-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP029653.1\|WP_000081597.1\|747366_748011_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223742
NZ_CP029653.1\|WP_000120368.1\|744614_745622_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP029653.1\|WP_000545116.1\|760578_760878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000865619.1\|753079_753724_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
NZ_CP029653.1\|WP_001574614.1\|752253_752727_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226072
NZ_CP029653.1\|WP_000148821.1\|762162_762621_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000158021.1\|756214_756682_+\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	8.41098e-45
NZ_CP029653.1\|WP_001574617.1\|748692_750843_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.37726e-19
NZ_CP029653.1\|WP_000638614.1\|760957_761500_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.895e-28
NZ_CP029653.1\|WP_001259673.1\|759541_759985_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.28382e-13
NZ_CP029653.1\|WP_000687413.1\|753841_754708_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.18267e-39
NZ_CP029653.1\|WP_000367064.1\|754997_756218_+\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.37741e-101
NZ_CP029653.1\|WP_000731642.1\|746208_747006_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.45836e-40
NZ_CP029653.1\|WP_000820892.1\|761594_762161_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
NZ_CP029653.1\|WP_000532966.1\|751537_752254_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
NZ_CP029653.1\|WP_000148821.1\|762162_762621_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	4.39168e-77
NZ_CP029653.1\|WP_001090984.1\|750988_751348_+\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	8.17439e-23
NZ_CP029653.1\|WP_110183817.1\|756924_758571_+\|IS1182-like-element-ISSau3-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.60304e-37
NZ_CP029653.1\|WP_000081597.1\|747366_748011_+\|hypothetical-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	2.53359e-32
NZ_CP029653.1\|WP_000120368.1\|744614_745622_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
NZ_CP029653.1\|WP_000865619.1\|753079_753724_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	6.78593e-91
NZ_CP029653.1\|WP_001574614.1\|752253_752727_+\|hypothetical-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	1.29027e-72

>NZ_CP029653.1|WP_000687413.1|753841_754708_+|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMTSFVEEPKA
>NZ_CP029653.1|WP_000865619.1|753079_753724_+|DUF402-domain-containing-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKIHQKPQNKTNFEKSKQIKPKQYNQTKNHQQQKKN
>NZ_CP029653.1|WP_031788497.1|752818_752935_+|hypothetical-protein
MLQLILMKIALNDFEKDKSVLFIFLKNHFYEEMCVLSN
>NZ_CP029653.1|WP_001574614.1|752253_752727_+|hypothetical-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYAVLKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>NZ_CP029653.1|WP_000532966.1|751537_752254_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>NZ_CP029653.1|WP_001090984.1|750988_751348_+|HTH-type-transcriptional-regulator-SarX
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>NZ_CP029653.1|WP_001574617.1|748692_750843_+|helix-turn-helix-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADVRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSAADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKFNKSIMLNPEPLVGGMAQEVKEVILNYIDHYKNHLTDVIHIDEDKFEIPKLFQTVIQINTYTEMKLVFLEGLFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESNLKIAFNINDIETTYYVEEAFMNVIRQLSPNEINHHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFDKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFHGFGLNIFDNHQTFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNILNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNNSLNINVTFNALYIIKIGKK
>NZ_CP029653.1|WP_000081597.1|747366_748011_+|hypothetical-protein
MSQNTNHSYYHQNQHAQAISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>NZ_CP029653.1|WP_000731642.1|746208_747006_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIANRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>NZ_CP029653.1|WP_000120368.1|744614_745622_+|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>NZ_CP029653.1|WP_000367064.1|754997_756218_+|MFS-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>NZ_CP029653.1|WP_000158021.1|756214_756682_+|DUF456-domain-containing-protein
MTIVLWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQASLGHKSLKKQQ
>NZ_CP029653.1|WP_110183817.1|756924_758571_+|IS1182-like-element-ISSau3-family-transposase
MYKNYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQNQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDDSSIFIDGTKVEANANRYTFVWKKSIRNHESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRIGFKRYAYRNNRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA
>NZ_CP029653.1|WP_000842865.1|758725_759415_-|DUF1129-family-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>NZ_CP029653.1|WP_001259673.1|759541_759985_+|GNAT-family-N-acetyltransferase
MRTLNKDEHNYIKQIANIHETLLSQAESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>NZ_CP029653.1|WP_000733427.1|760051_760441_+|hypothetical-protein
MKKLIISIMAIMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDQTKSSDKDNHKKPTSTDKDQKANDKHQS
>NZ_CP029653.1|WP_000545116.1|760578_760878_+|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>NZ_CP029653.1|WP_000638614.1|760957_761500_+|GNAT-family-N-acetyltransferase
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>NZ_CP029653.1|WP_000820892.1|761594_762161_-|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>NZ_CP029653.1|WP_000148821.1|762162_762621_-|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEKSLLRVIHRIKELD

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Crispr_ID: NZ_CP029653_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_5

844526-844610

Unclear

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP029653_5

>merge|NZ_CP029653|5|844526-844610|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>NZ_CP029653|5|5|844526-844610|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000686342.1\|834455_835322_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP029653.1\|WP_000958224.1\|852733_853666_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP029653.1\|WP_000258151.1\|832451_833507_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP029653.1\|WP_000617735.1\|837495_838068_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP029653.1\|WP_001574591.1\|840393_842925_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP029653.1\|WP_000134963.1\|856520_857456_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP029653.1\|WP_110183821.1\|838075_839746_-\|IS1182-like-element-ISSep1-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP029653.1\|WP_000192947.1\|833670_834312_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP029653.1\|WP_001791369.1\|842966_843065_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000749385.1\|845118_845958_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029653.1\|WP_098827697.1\|843239_844350_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP029653.1\|WP_000538141.1\|846131_846782_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_CP029653.1\|WP_000229253.1\|847283_849269_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP029653.1\|WP_000662687.1\|849276_852123_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP029653.1\|WP_000508984.1\|853671_854514_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP029653.1\|WP_001224791.1\|854521_855007_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP029653.1\|WP_000057557.1\|855014_856454_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
NZ_CP029653.1\|WP_000638419.1\|846778_847015_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP029653.1\|WP_000370984.1\|835685_836768_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
NZ_CP029653.1\|WP_001057973.1\|836760_837435_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000686342.1\|834455_835322_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17692e-120
NZ_CP029653.1\|WP_000958224.1\|852733_853666_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP029653.1\|WP_000258151.1\|832451_833507_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	2.69988e-87
NZ_CP029653.1\|WP_000617735.1\|837495_838068_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
NZ_CP029653.1\|WP_001574591.1\|840393_842925_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP029653.1\|WP_000134963.1\|856520_857456_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP029653.1\|WP_110183821.1\|838075_839746_-\|IS1182-like-element-ISSep1-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.46139e-34
NZ_CP029653.1\|WP_000192947.1\|833670_834312_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	7.46066e-72
NZ_CP029653.1\|WP_000508984.1\|853671_854514_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.12313e-120
NZ_CP029653.1\|WP_000749385.1\|845118_845958_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	3.29354e-42
NZ_CP029653.1\|WP_098827697.1\|843239_844350_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP029653.1\|WP_000538141.1\|846131_846782_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NZ_CP029653.1\|WP_000229253.1\|847283_849269_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP029653.1\|WP_000662687.1\|849276_852123_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP029653.1\|WP_001224791.1\|854521_855007_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	7.57447e-30
NZ_CP029653.1\|WP_000057557.1\|855014_856454_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	7.77476e-06
NZ_CP029653.1\|WP_000638419.1\|846778_847015_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP029653.1\|WP_000370984.1\|835685_836768_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.30855e-179
NZ_CP029653.1\|WP_001057973.1\|836760_837435_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.20522e-50

>NZ_CP029653.1|WP_098827697.1|843239_844350_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NZ_CP029653.1|WP_001791369.1|842966_843065_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSLKK
>NZ_CP029653.1|WP_001574591.1|840393_842925_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKSVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMIVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NZ_CP029653.1|WP_110183821.1|838075_839746_-|IS1182-like-element-ISSep1-family-transposase
MYKDYNMTQLTLPMETSVLIPTNDISRHVNDIVETIPETEFDEFRHHRGATSYHPKMMLKVVLYAYTQSVFSGRKIEKLLNDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLFIQFHSQCLKQNLIDDQAIFIDGTKVEANANRYTFVWKKSIQNHESRMNENSKALYHELVINKIIPEIKKDHDNDLTKEEIDLIGSHLDKEIEDLNQHIDNEKCTKIRKQIRLKRTKIKKYKKQINDYSQRKHKYEVQKSILKDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLFYNVYQNPTDTRTMIPFLNTIQETYGHLPEYIVADAGYGSEANYMAIIDNFNRTPLITYGMFIKDKTKKYKSDIFNTQNWDYDEINDEFICPNNKRLGFKRYAYRHDKYGFKRDFKLYECDDCSECPLKQQCMNFNSKTNKKIMKNYNWEYFKAQINKKLSEPKTKTIYSQRKIDVEPVFGFMKAILGFTRMSVRGIDKAKRELGFVLMALNIRKVTAQRAENNQKNNKKDNFYIISIEIVFFYLSWDFMSHTL
>NZ_CP029653.1|WP_000617735.1|837495_838068_+|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>NZ_CP029653.1|WP_001057973.1|836760_837435_+|ComF-family-protein
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKYLDQNEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFSKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>NZ_CP029653.1|WP_000370984.1|835685_836768_+|DEAD/DEAH-box-helicase
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE
>NZ_CP029653.1|WP_000686342.1|834455_835322_+|DegV-family-protein
MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYLIVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALYKKLQDDCPSAYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT
>NZ_CP029653.1|WP_000192947.1|833670_834312_-|YigZ-family-protein
MTQNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPEMNIQKANDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLIRAYSGAVRDVIYDIGRVELREAVPCIVTLNYDQTGKFEYELASTHFMLRNQTYTDKVSYYIDVVKSDYEAFINFLNQMTAGNFDLTEETPKQLPFDIPTE
>NZ_CP029653.1|WP_000258151.1|832451_833507_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPISVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQIAAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGVSAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNNYRPILNLISRKSSHKEE
>NZ_CP029653.1|WP_000749385.1|845118_845958_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKKVVQQPVQQASKKVVVKQAPKQTVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP029653.1|WP_000538141.1|846131_846782_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_CP029653.1|WP_000638419.1|846778_847015_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP029653.1|WP_000229253.1|847283_849269_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP029653.1|WP_000662687.1|849276_852123_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_CP029653.1|WP_000958224.1|852733_853666_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP029653.1|WP_000508984.1|853671_854514_+|prolipoprotein-diacylglyceryl-transferase
MGGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTRKVK
>NZ_CP029653.1|WP_001224791.1|854521_855007_+|acetyltransferase
MRKFLSKEYHRTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQILNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP029653.1|WP_000057557.1|855014_856454_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLKEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP029653.1|WP_000134963.1|856520_857456_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA

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Crispr_ID: NZ_CP029653_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_6

974636-974721

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_6

>merge|NZ_CP029653|6|974636-974721|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAGCTTACAATAATGTGCAAGTTGG

>NZ_CP029653|6|6|974636-974721|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGTGG
AAAGCCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000167322.1\|971941_973132_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP029653.1\|WP_110183824.1\|965776_968182_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP029653.1\|WP_000711897.1\|981752_982328_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP029653.1\|WP_000781162.1\|968312_968696_-\|kinase	unknown	unknown	gnl\|CDD\|378054
NZ_CP029653.1\|WP_011443624.1\|965014_965344_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP029653.1\|WP_000573086.1\|963525_965022_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP029653.1\|WP_001081626.1\|965355_965784_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP029653.1\|WP_000007960.1\|980632_981208_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP029653.1\|WP_001067294.1\|969767_970145_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_CP029653.1\|WP_000758217.1\|981212_981737_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP029653.1\|WP_110183825.1\|978975_980307_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP029653.1\|WP_000185311.1\|974879_975809_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP029653.1\|WP_000066056.1\|976050_977430_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP029653.1\|WP_000154949.1\|985964_989618_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP029653.1\|WP_000138487.1\|973240_974485_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP029653.1\|WP_000172367.1\|982487_985964_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP029653.1\|WP_000670755.1\|989783_990686_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP029653.1\|WP_000660054.1\|977419_978625_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP029653.1\|WP_000838046.1\|970506_971634_+\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP029653.1\|WP_000035058.1\|968759_969353_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000167322.1\|971941_973132_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP029653.1\|WP_110183824.1\|965776_968182_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP029653.1\|WP_000711897.1\|981752_982328_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.63465e-53
NZ_CP029653.1\|WP_000781162.1\|968312_968696_-\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
NZ_CP029653.1\|WP_011443624.1\|965014_965344_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61
NZ_CP029653.1\|WP_000573086.1\|963525_965022_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP029653.1\|WP_001081626.1\|965355_965784_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP029653.1\|WP_000007960.1\|980632_981208_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.0006e-40
NZ_CP029653.1\|WP_001067294.1\|969767_970145_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_CP029653.1\|WP_000758217.1\|981212_981737_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.75286e-49
NZ_CP029653.1\|WP_110183825.1\|978975_980307_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP029653.1\|WP_000185311.1\|974879_975809_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	8.83368e-151
NZ_CP029653.1\|WP_000066056.1\|976050_977430_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP029653.1\|WP_000154949.1\|985964_989618_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029653.1\|WP_000138487.1\|973240_974485_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP029653.1\|WP_000172367.1\|982487_985964_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029653.1\|WP_000670755.1\|989783_990686_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.74159e-87
NZ_CP029653.1\|WP_000660054.1\|977419_978625_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP029653.1\|WP_000838046.1\|970506_971634_+\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP029653.1\|WP_000035058.1\|968759_969353_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65

>NZ_CP029653.1|WP_000138487.1|973240_974485_+|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP029653.1|WP_000167322.1|971941_973132_+|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINKNTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP029653.1|WP_000838046.1|970506_971634_+|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVVLPNGVELRNRFVLAPLTHISSNDDGTISDIELPYIEKRSQDVGITSNAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPIAVIEEVLKAKEVYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATAREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADDALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP029653.1|WP_001067294.1|969767_970145_+|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP029653.1|WP_000035058.1|968759_969353_+|peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP029653.1|WP_000781162.1|968312_968696_-|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP029653.1|WP_110183824.1|965776_968182_-|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWIWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASKANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTVFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKCSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP029653.1|WP_001081626.1|965355_965784_-|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP029653.1|WP_011443624.1|965014_965344_-|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_CP029653.1|WP_000573086.1|963525_965022_-|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPLRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>NZ_CP029653.1|WP_000185311.1|974879_975809_-|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNHIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDENVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNKNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP029653.1|WP_000066056.1|976050_977430_-|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLSTYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP029653.1|WP_000660054.1|977419_978625_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMRAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_CP029653.1|WP_110183825.1|978975_980307_+|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGGAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP029653.1|WP_000007960.1|980632_981208_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVDTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLIVFWIVGKKLEQHFMGSKKE
>NZ_CP029653.1|WP_000758217.1|981212_981737_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKKLDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_CP029653.1|WP_000711897.1|981752_982328_+|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKYNFNPENTKN
>NZ_CP029653.1|WP_000172367.1|982487_985964_+|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEISNELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_CP029653.1|WP_000154949.1|985964_989618_+|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTLDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVFDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_CP029653.1|WP_000670755.1|989783_990686_+|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVERLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK

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Crispr_ID: NZ_CP029653_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_7

2083245-2083372

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_7

>merge|NZ_CP029653|7|2083245-2083372|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>NZ_CP029653|7|7|2083245-2083372|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_001793998.1\|2077810_2078953_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP029653.1\|WP_000669380.1\|2072546_2073368_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP029653.1\|WP_000379091.1\|2100356_2101334_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP029653.1\|WP_000939529.1\|2092893_2093349_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP029653.1\|WP_000284755.1\|2099167_2100205_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP029653.1\|WP_000063551.1\|2081519_2082581_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP029653.1\|WP_001236371.1\|2095011_2096106_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP029653.1\|WP_000251252.1\|2098322_2098865_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP029653.1\|WP_000181394.1\|2077335_2077806_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP029653.1\|WP_001011603.1\|2093429_2094719_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_CP029653.1\|WP_000031108.1\|2076400_2076553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000886472.1\|2101594_2102431_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224596
NZ_CP029653.1\|WP_000649898.1\|2079803_2081261_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP029653.1\|WP_000901019.1\|2075404_2075800_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000110011.1\|2091394_2091841_-\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_CP029653.1\|WP_001573829.1\|2073823_2075209_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP029653.1\|WP_000535849.1\|2102439_2103957_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_CP029653.1\|WP_001144055.1\|2079088_2079817_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP029653.1\|WP_001251219.1\|2076577_2077177_-\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440
NZ_CP029653.1\|WP_000869463.1\|2091937_2092888_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_001793998.1\|2077810_2078953_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.304e-179
NZ_CP029653.1\|WP_000669380.1\|2072546_2073368_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.57209e-78
NZ_CP029653.1\|WP_000379091.1\|2100356_2101334_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.21408e-39
NZ_CP029653.1\|WP_000939529.1\|2092893_2093349_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.18155e-68
NZ_CP029653.1\|WP_000284755.1\|2099167_2100205_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.67816e-157
NZ_CP029653.1\|WP_000063551.1\|2081519_2082581_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.65132e-122
NZ_CP029653.1\|WP_001236371.1\|2095011_2096106_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.5476e-86
NZ_CP029653.1\|WP_000251252.1\|2098322_2098865_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.0244e-125
NZ_CP029653.1\|WP_000181394.1\|2077335_2077806_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
NZ_CP029653.1\|WP_001011603.1\|2093429_2094719_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_CP029653.1\|WP_000886472.1\|2101594_2102431_-\|hypothetical-protein	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000164936
NZ_CP029653.1\|WP_000649898.1\|2079803_2081261_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.55367e-98
NZ_CP029653.1\|WP_000535849.1\|2102439_2103957_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	9.18973e-90
NZ_CP029653.1\|WP_000110011.1\|2091394_2091841_-\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
NZ_CP029653.1\|WP_001573829.1\|2073823_2075209_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP029653.1\|WP_001144055.1\|2079088_2079817_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
NZ_CP029653.1\|WP_001251219.1\|2076577_2077177_-\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	9.77274e-11
NZ_CP029653.1\|WP_000869463.1\|2091937_2092888_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	8.45391e-136

>NZ_CP029653.1|WP_000063551.1|2081519_2082581_-|PTS-transporter-subunit-IIC
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>NZ_CP029653.1|WP_000649898.1|2079803_2081261_-|ABC-transporter-permease-subunit
MKCLIRFILVLGLLISSAMVYINPAAYAEQDQKWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNDYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGVVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>NZ_CP029653.1|WP_001144055.1|2079088_2079817_-|amino-acid-ABC-transporter-ATP-binding-protein
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>NZ_CP029653.1|WP_001793998.1|2077810_2078953_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MGGIRLDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>NZ_CP029653.1|WP_000181394.1|2077335_2077806_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>NZ_CP029653.1|WP_001251219.1|2076577_2077177_-|glucosamine-6-phosphate-isomerase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNIEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>NZ_CP029653.1|WP_000031108.1|2076400_2076553_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>NZ_CP029653.1|WP_000901019.1|2075404_2075800_-|hypothetical-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPIIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>NZ_CP029653.1|WP_001573829.1|2073823_2075209_-|class-II-fumarate-hydratase
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPVEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHHSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAQYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>NZ_CP029653.1|WP_000669380.1|2072546_2073368_+|RluA-family-pseudouridine-synthase
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>NZ_CP029653.1|WP_000110011.1|2091394_2091841_-|peroxide-responsive-transcriptional-repressor-PerR
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>NZ_CP029653.1|WP_000869463.1|2091937_2092888_-|2-hydroxyacid-dehydrogenase
MKVVGLNRMREVETELQQRFSDVDFKFYKKASEIPESDLANLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIVINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEALLIEVLKSRVIRHAYLDVFENEPLKPNHELYELDNVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>NZ_CP029653.1|WP_000939529.1|2092893_2093349_-|thioredoxin-dependent-thiol-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIVYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>NZ_CP029653.1|WP_001011603.1|2093429_2094719_+|glutamate-1-semialdehyde-2,1-aminomutase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHSNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>NZ_CP029653.1|WP_001236371.1|2095011_2096106_+|aromatic-acid-exporter-family-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>NZ_CP029653.1|WP_000251252.1|2098322_2098865_-|DUF402-domain-containing-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKDRYKKIRQY
>NZ_CP029653.1|WP_000284755.1|2099167_2100205_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFKSEHARREMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGTINIERLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>NZ_CP029653.1|WP_000379091.1|2100356_2101334_+|metal-dependent-hydrolase
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTHPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVVGLHPLAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQKLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTKDNVIDHSYIGWVFTEDKLQRKLYAK
>NZ_CP029653.1|WP_000886472.1|2101594_2102431_-|hypothetical-protein
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRLIALIVFAVLMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGICVLCFLVLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSKDSTDEADTSS
>NZ_CP029653.1|WP_000535849.1|2102439_2103957_-|ABC-transporter-ATP-binding-protein
MGSSIVLKLLKVTHYYRNKQNKKWYLPFGYDAQDIDLNNISLHIYQGEALGIIGEPESSKAMVGQLLAGAIKPDKGKVVCTEDLFYGYIEDQSLIHQTVEAYTAQLVQLFPYEINNHKAEQIIQYAHLGDYKTKPVNHISKAAYAQLLLSIARSSKSNIIILNHVIDYLTPQFMERAIELTNDYIENNLTIVSIGDDIDKISQVSNYIAWFSHGQLRMEGSLKQVIPSFKEHERDRLSLNSKEEIENFDLDWKKNRTRIPEMTYNFKRVERYNHAKPPKFLVRFWTLASGTILGLALMMLLIFNNIGIISITDFTNRATMQNENKDPYGEKLAYGIAFNGSVDLQGDKQVTIPKYSVVTITGENSKNYRVTADNKTYYVSKDKLEYFNPAGLYQTHSFKKLAPFMKSNYSNYYAYFNSQLHKKHSSVIKTLVPDDDNRFVASVTQQPIQLLFNDNNQLYGFVYPIVDKKELKDKFNINNNIWITKVGNGYCIANLKEDKWIYIEL

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Crispr_ID: NZ_CP029653_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_8

2117480-2117564

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCTACACCCCAAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP029653_8

>merge|NZ_CP029653|8|2117480-2117564|CRISPRCasFinder
TCTGTGTTGGGGCCTACACCCCAACCTGCATTGCCTGTAGAATTTCTTTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAAC

>NZ_CP029653|8|8|2117480-2117564|CRISPRCasFinder
TCTGTGTTGGGGCCTACACCCCAAC	CTGCATTGCCTGTAGAATTTCTTTTTTCGAAATTC
TCTGTGTTGGGGCCCACACCCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000228670.1\|2111159_2111624_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP029653.1\|WP_000153535.1\|2113513_2114143_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP029653.1\|WP_000037081.1\|2112183_2113401_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP029653.1\|WP_001790679.1\|2122682_2122775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001790257.1\|2119566_2119677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001014423.1\|2117949_2118936_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP029653.1\|WP_000613738.1\|2122991_2123546_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP029653.1\|WP_001793983.1\|2109553_2110810_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_CP029653.1\|WP_001017131.1\|2114132_2115176_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP029653.1\|WP_000180460.1\|2110812_2111013_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_CP029653.1\|WP_000636142.1\|2116491_2117250_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP029653.1\|WP_001250339.1\|2120495_2121809_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP029653.1\|WP_000949466.1\|2122100_2122601_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP029653.1\|WP_001573815.1\|2119124_2119538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000548777.1\|2124929_2125460_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP029653.1\|WP_000428172.1\|2111630_2111906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000544973.1\|2119762_2120494_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP029653.1\|WP_001110178.1\|2115888_2116275_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000149064.1\|2115172_2115874_-\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_CP029653.1\|WP_000140179.1\|2123612_2124683_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000228670.1\|2111159_2111624_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	5.12846e-65
NZ_CP029653.1\|WP_000153535.1\|2113513_2114143_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
NZ_CP029653.1\|WP_000037081.1\|2112183_2113401_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.99224e-85
NZ_CP029653.1\|WP_001014423.1\|2117949_2118936_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	9.69605e-76
NZ_CP029653.1\|WP_000613738.1\|2122991_2123546_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP029653.1\|WP_001793983.1\|2109553_2110810_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_CP029653.1\|WP_001017131.1\|2114132_2115176_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NZ_CP029653.1\|WP_000180460.1\|2110812_2111013_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NZ_CP029653.1\|WP_000636142.1\|2116491_2117250_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
NZ_CP029653.1\|WP_001250339.1\|2120495_2121809_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.60835e-98
NZ_CP029653.1\|WP_000949466.1\|2122100_2122601_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.15329e-74
NZ_CP029653.1\|WP_000548777.1\|2124929_2125460_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.54005e-11
NZ_CP029653.1\|WP_000544973.1\|2119762_2120494_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.79354e-120
NZ_CP029653.1\|WP_000149064.1\|2115172_2115874_-\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NZ_CP029653.1\|WP_000140179.1\|2123612_2124683_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0

>NZ_CP029653.1|WP_000636142.1|2116491_2117250_-|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NZ_CP029653.1|WP_001110178.1|2115888_2116275_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMHYLITKKEQLSKLIDSLMLTLENKYIDIVEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NZ_CP029653.1|WP_000149064.1|2115172_2115874_-|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NZ_CP029653.1|WP_001017131.1|2114132_2115176_-|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NZ_CP029653.1|WP_000153535.1|2113513_2114143_-|response-regulator-transcription-factor
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_CP029653.1|WP_000037081.1|2112183_2113401_+|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDTNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NZ_CP029653.1|WP_000428172.1|2111630_2111906_+|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NZ_CP029653.1|WP_000228670.1|2111159_2111624_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIQDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_CP029653.1|WP_000180460.1|2110812_2111013_-|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NZ_CP029653.1|WP_001793983.1|2109553_2110810_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYRCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>NZ_CP029653.1|WP_001014423.1|2117949_2118936_+|aromatic-acid-exporter-family-protein
MNGQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEIILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>NZ_CP029653.1|WP_001573815.1|2119124_2119538_-|hypothetical-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSVTFEDQEIKFEFALFDSDMDNLKYIEYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMVTESGVSLRINVTKSGFTKFINELVSLH
>NZ_CP029653.1|WP_001790257.1|2119566_2119677_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_CP029653.1|WP_000544973.1|2119762_2120494_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>NZ_CP029653.1|WP_001250339.1|2120495_2121809_-|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNGDDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISRFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP029653.1|WP_000949466.1|2122100_2122601_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEEAMFETHINYLTRIGDDSNALYLYEKELGTRTFDEE
>NZ_CP029653.1|WP_001790679.1|2122682_2122775_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_CP029653.1|WP_000613738.1|2122991_2123546_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP029653.1|WP_000140179.1|2123612_2124683_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP029653.1|WP_000548777.1|2124929_2125460_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSAGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029653_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_9

2128162-2128465

Orphan

Consensus_repeat	Method
NTCTNTGTTNGGGNCCCNNC	CRT

5 spacers

DEDDh

The CRISPR arrays of NZ_CP029653_9

>merge|NZ_CP029653|9|2128162-2128465|CRT
TCTATGTTTGGGGCCCCACCCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCTTTTCAAAATTCTCTATGTTTGGGGCCCCACCCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTTTGTTGGGGCCCCACCCTAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCTTCTTTGTTGGGGCCCCAC

>NZ_CP029653|9|3|2128162-2128465|CRT
TCTATGTTTGGGGCCCCAC	CCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGCT
TCTATGTTGGGGCCCCGCC	AACTTGCATTGTCTGTAGAATTTCTTTTCAAAATTC
TCTATGTTTGGGGCCCCAC	CCCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGC
TTCTATGTTGGGGCCCCGC	CAACTTGCATTGTCTGTAGAATTTCCTTTCGAAATT
CTCTTTGTTGGGGCCCCAC	CCTAACTTGCACATTATTGTAAGCTGACAGAAAGTCAGC
TTCTTTGTTGGGGCCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_001147874.1\|2125629_2126991_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP029653.1\|WP_001573809.1\|2128955_2130383_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP029653.1\|WP_001250339.1\|2120495_2121809_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP029653.1\|WP_000831695.1\|2134150_2135350_-\|CamS-family-sex-pheromone-protein	unknown	unknown	gnl\|CDD\|227188
NZ_CP029653.1\|WP_001165363.1\|2140433_2140736_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226893
NZ_CP029653.1\|WP_000027924.1\|2130395_2131853_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP029653.1\|WP_000613738.1\|2122991_2123546_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP029653.1\|WP_000544973.1\|2119762_2120494_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP029653.1\|WP_000774552.1\|2135362_2137366_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP029653.1\|WP_000957023.1\|2132523_2134062_+\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP029653.1\|WP_000949466.1\|2122100_2122601_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP029653.1\|WP_001790679.1\|2122682_2122775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000548777.1\|2124929_2125460_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP029653.1\|WP_000992924.1\|2137369_2139562_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP029653.1\|WP_001790257.1\|2119566_2119677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001791535.1\|2128770_2128917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000170162.1\|2131854_2132157_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP029653.1\|WP_000272063.1\|2139558_2140251_-\|heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|224560
NZ_CP029653.1\|WP_000140179.1\|2123612_2124683_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP029653.1\|WP_001231458.1\|2127071_2128019_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_001147874.1\|2125629_2126991_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
NZ_CP029653.1\|WP_001573809.1\|2128955_2130383_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP029653.1\|WP_001250339.1\|2120495_2121809_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.60835e-98
NZ_CP029653.1\|WP_000831695.1\|2134150_2135350_-\|CamS-family-sex-pheromone-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	0
NZ_CP029653.1\|WP_001165363.1\|2140433_2140736_-\|hypothetical-protein	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	1.66593e-59
NZ_CP029653.1\|WP_000027924.1\|2130395_2131853_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP029653.1\|WP_000613738.1\|2122991_2123546_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP029653.1\|WP_000544973.1\|2119762_2120494_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.79354e-120
NZ_CP029653.1\|WP_000949466.1\|2122100_2122601_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.15329e-74
NZ_CP029653.1\|WP_000774552.1\|2135362_2137366_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP029653.1\|WP_000548777.1\|2124929_2125460_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.54005e-11
NZ_CP029653.1\|WP_000992924.1\|2137369_2139562_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029653.1\|WP_000957023.1\|2132523_2134062_+\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP029653.1\|WP_000170162.1\|2131854_2132157_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.296e-34
NZ_CP029653.1\|WP_000272063.1\|2139558_2140251_-\|heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|224560	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only].	2.53994e-99
NZ_CP029653.1\|WP_000140179.1\|2123612_2124683_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP029653.1\|WP_001231458.1\|2127071_2128019_-\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0

>NZ_CP029653.1|WP_001231458.1|2127071_2128019_-|diacylglycerol-kinase
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>NZ_CP029653.1|WP_001147874.1|2125629_2126991_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMVIFVTNGKNWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>NZ_CP029653.1|WP_000548777.1|2124929_2125460_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSAGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>NZ_CP029653.1|WP_000140179.1|2123612_2124683_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP029653.1|WP_000613738.1|2122991_2123546_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP029653.1|WP_001790679.1|2122682_2122775_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_CP029653.1|WP_000949466.1|2122100_2122601_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEEAMFETHINYLTRIGDDSNALYLYEKELGTRTFDEE
>NZ_CP029653.1|WP_001250339.1|2120495_2121809_-|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNGDDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISRFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP029653.1|WP_000544973.1|2119762_2120494_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>NZ_CP029653.1|WP_001790257.1|2119566_2119677_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_CP029653.1|WP_001791535.1|2128770_2128917_-|hypothetical-protein
MVADLDAIEGLFISIEVILLLTLFIVHVNGKNINFINALALIILRQTV
>NZ_CP029653.1|WP_001573809.1|2128955_2130383_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGEIKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR
>NZ_CP029653.1|WP_000027924.1|2130395_2131853_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADANDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL
>NZ_CP029653.1|WP_000170162.1|2131854_2132157_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA
>NZ_CP029653.1|WP_000957023.1|2132523_2134062_+|sodium/proline-symporter-PutP
MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLVRGEEKAKTHQKEFVMVGRLSVLAVAIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
>NZ_CP029653.1|WP_000831695.1|2134150_2135350_-|CamS-family-sex-pheromone-protein
MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN
>NZ_CP029653.1|WP_000774552.1|2135362_2137366_-|NAD-dependent-DNA-ligase-LigA
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS
>NZ_CP029653.1|WP_000992924.1|2137369_2139562_-|DNA-helicase-PcrA
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKRLLAQFAPIEKKED
>NZ_CP029653.1|WP_000272063.1|2139558_2140251_-|heptaprenylglyceryl-phosphate-synthase
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHLYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
>NZ_CP029653.1|WP_001165363.1|2140433_2140736_-|hypothetical-protein
MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE

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Crispr_ID: NZ_CP029653_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_10

2360741-2360830

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP029653_10

>merge|NZ_CP029653|10|2360741-2360830|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGCAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>NZ_CP029653|10|9|2360741-2360830|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGCAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000370937.1\|2362766_2363624_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP029653.1\|WP_000927367.1\|2368764_2370897_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP029653.1\|WP_001573504.1\|2351230_2351941_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP029653.1\|WP_000648736.1\|2371342_2372449_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP029653.1\|WP_001792784.1\|2361949_2362108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000334466.1\|2364705_2366511_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP029653.1\|WP_001573505.1\|2358386_2359367_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP029653.1\|WP_000083795.1\|2367191_2368730_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP029653.1\|WP_000521495.1\|2380444_2381800_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP029653.1\|WP_000003759.1\|2358064_2358385_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP029653.1\|WP_001123310.1\|2352704_2353118_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP029653.1\|WP_000908186.1\|2363691_2364474_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP029653.1\|WP_110183862.1\|2370908_2371343_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP029653.1\|WP_000123402.1\|2353566_2354940_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP029653.1\|WP_073392962.1\|2361165_2361270_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000808817.1\|2355612_2355843_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001024099.1\|2357247_2357913_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP029653.1\|WP_000495684.1\|2359632_2360724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001127959.1\|2355873_2356812_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP029653.1\|WP_000070866.1\|2352061_2352505_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000370937.1\|2362766_2363624_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.15818e-59
NZ_CP029653.1\|WP_000927367.1\|2368764_2370897_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.39374e-67
NZ_CP029653.1\|WP_001573504.1\|2351230_2351941_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	5.58822e-156
NZ_CP029653.1\|WP_000648736.1\|2371342_2372449_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP029653.1\|WP_001024099.1\|2357247_2357913_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.27205e-48
NZ_CP029653.1\|WP_000334466.1\|2364705_2366511_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP029653.1\|WP_110183862.1\|2370908_2371343_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	3.63374e-61
NZ_CP029653.1\|WP_000083795.1\|2367191_2368730_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP029653.1\|WP_000521495.1\|2380444_2381800_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP029653.1\|WP_000003759.1\|2358064_2358385_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP029653.1\|WP_001123310.1\|2352704_2353118_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	4.7919e-46
NZ_CP029653.1\|WP_000123402.1\|2353566_2354940_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP029653.1\|WP_000908186.1\|2363691_2364474_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.75723e-107
NZ_CP029653.1\|WP_001573505.1\|2358386_2359367_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.23697e-107
NZ_CP029653.1\|WP_001127959.1\|2355873_2356812_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.00589e-128
NZ_CP029653.1\|WP_000070866.1\|2352061_2352505_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67

>NZ_CP029653.1|WP_000495684.1|2359632_2360724_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLVGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITIILFVVIHAVILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP029653.1|WP_001573505.1|2358386_2359367_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVIATIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTIKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHSHHAHHHAHVH
>NZ_CP029653.1|WP_000003759.1|2358064_2358385_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP029653.1|WP_001024099.1|2357247_2357913_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>NZ_CP029653.1|WP_001127959.1|2355873_2356812_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAFEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNGRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP029653.1|WP_000808817.1|2355612_2355843_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP029653.1|WP_000123402.1|2353566_2354940_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP029653.1|WP_001123310.1|2352704_2353118_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFTTLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFADNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP029653.1|WP_000070866.1|2352061_2352505_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP029653.1|WP_001573504.1|2351230_2351941_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNIFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_CP029653.1|WP_073392962.1|2361165_2361270_-|hypothetical-protein
MLLLERTSMSDFEMLMIVLTIIGLVLISTQDHKK
>NZ_CP029653.1|WP_001792784.1|2361949_2362108_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_CP029653.1|WP_000370937.1|2362766_2363624_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPEDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQKETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP029653.1|WP_000908186.1|2363691_2364474_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINEGDKWILYGLNGAGKTTLLNILNAYEPATTGYVNLFGKMPGKVGYSTETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP029653.1|WP_000334466.1|2364705_2366511_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVTLQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP029653.1|WP_000083795.1|2367191_2368730_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWFPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLATLVSFVVAALIMKFTKEPKQDLEAATAQMETTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSLDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP029653.1|WP_000927367.1|2368764_2370897_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRITGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNLAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETRDKSSNMIDKDDVHIETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLISDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP029653.1|WP_110183862.1|2370908_2371343_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVYSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEGNVDRIVQAKSAEEIKQVFEEADA
>NZ_CP029653.1|WP_000648736.1|2371342_2372449_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALATGHQYDVILADESKTTTRVNNVAAINSMQPSEELKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLAYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP029653.1|WP_000521495.1|2380444_2381800_-|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK

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Crispr_ID: NZ_CP029653_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_11

2438286-2438411

Orphan

Consensus_repeat	Method
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_11

>merge|NZ_CP029653|11|2438286-2438411|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCACTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTTCCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

>NZ_CP029653|11|10|2438286-2438411|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	CTGGTTTCTCATGATTTTTTAATGTTTTTATTTTGAGTTACTCGAAAATTTT
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_000389651.1\|2443803_2444613_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_CP029653.1\|WP_000542274.1\|2446808_2447177_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP029653.1\|WP_001791582.1\|2428692_2428860_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_001221836.1\|2441351_2442146_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP029653.1\|WP_000850000.1\|2428033_2428450_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP029653.1\|WP_000586768.1\|2442946_2443807_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NZ_CP029653.1\|WP_000204276.1\|2438468_2439905_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP029653.1\|WP_001044451.1\|2431342_2432197_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP029653.1\|WP_000222271.1\|2428856_2431283_+\|polysaccharide-lyase-8-family-protein	unknown	unknown	gnl\|CDD\|238517
NZ_CP029653.1\|WP_000791607.1\|2442150_2442957_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP029653.1\|WP_001250038.1\|2440665_2441103_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP029653.1\|WP_000170975.1\|2440253_2440652_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP029653.1\|WP_000769709.1\|2433517_2433943_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NZ_CP029653.1\|WP_094409958.1\|2445014_2446582_-\|IS3-like-element-ISSau2-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP029653.1\|WP_001791584.1\|2437208_2437391_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000136272.1\|2438040_2438220_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236623
NZ_CP029653.1\|WP_000130145.1\|2435074_2436739_-\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP029653.1\|WP_000179061.1\|2434333_2435038_-\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NZ_CP029653.1\|WP_000044369.1\|2432407_2433223_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792
NZ_CP029653.1\|WP_000569649.1\|2447193_2448138_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_000389651.1\|2443803_2444613_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP029653.1\|WP_000542274.1\|2446808_2447177_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NZ_CP029653.1\|WP_001221836.1\|2441351_2442146_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.21958e-120
NZ_CP029653.1\|WP_000850000.1\|2428033_2428450_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.51415e-41
NZ_CP029653.1\|WP_000586768.1\|2442946_2443807_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
NZ_CP029653.1\|WP_000204276.1\|2438468_2439905_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.62674e-63
NZ_CP029653.1\|WP_001044451.1\|2431342_2432197_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.20929e-22
NZ_CP029653.1\|WP_000222271.1\|2428856_2431283_+\|polysaccharide-lyase-8-family-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
NZ_CP029653.1\|WP_000791607.1\|2442150_2442957_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.81787e-49
NZ_CP029653.1\|WP_001250038.1\|2440665_2441103_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
NZ_CP029653.1\|WP_000170975.1\|2440253_2440652_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NZ_CP029653.1\|WP_000769709.1\|2433517_2433943_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	8.17372e-34
NZ_CP029653.1\|WP_094409958.1\|2445014_2446582_-\|IS3-like-element-ISSau2-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.59839e-44
NZ_CP029653.1\|WP_000136272.1\|2438040_2438220_-\|hypothetical-protein	gnl\|CDD\|236623	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ.	0.0004492
NZ_CP029653.1\|WP_000130145.1\|2435074_2436739_-\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP029653.1\|WP_000179061.1\|2434333_2435038_-\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.39507e-119
NZ_CP029653.1\|WP_000044369.1\|2432407_2433223_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.06188e-100
NZ_CP029653.1\|WP_000569649.1\|2447193_2448138_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175

>NZ_CP029653.1|WP_000136272.1|2438040_2438220_-|hypothetical-protein
MTEIVEFLSDGKLASRLEIQETMGLQKSYTSELIAELKKLEIIGSEGRGPGTRYYLIRD
>NZ_CP029653.1|WP_001791584.1|2437208_2437391_-|hypothetical-protein
MIDSVFWKKAFIPVYFIVAMLVFLLFRFYIKTNNFSIYLMIIFLMCLGTASIIYNYKNNR
>NZ_CP029653.1|WP_000130145.1|2435074_2436739_-|acetolactate-synthase-AlsS
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NZ_CP029653.1|WP_000179061.1|2434333_2435038_-|acetolactate-decarboxylase
MASVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGAVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDEDFINANIDYKDIADEIREAE
>NZ_CP029653.1|WP_000769709.1|2433517_2433943_+|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNQLASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>NZ_CP029653.1|WP_000044369.1|2432407_2433223_-|HAD-IIB-family-hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVITVVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILHHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDRRILEVLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NZ_CP029653.1|WP_001044451.1|2431342_2432197_-|M23-family-metallopeptidase
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTWQSDVHELKVCTQNDGTIEQIWIDKANQFGVAVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNLGKVNADYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTKESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGDVVCGLQGE
>NZ_CP029653.1|WP_000222271.1|2428856_2431283_+|polysaccharide-lyase-8-family-protein
MTYRMKKWQKLSTITLLMAGVITLNGGEFRSIDKHQIAVADTNVQTTDYEKLRNIWLDVNYGYDKYDENNPDMKKKFEATENEAEKLLKEMKTESDRKYLWESSKDLDTKSADMTRTYRNIEKISEAMKHKNTKLKTDENKTKVKDALEWLHKNAYGKEPDKKVADLTSNFKNKTSRNTNLNWWDYEIGTPRALTNTLILLQEDFTDEEKKKYTAPIKTFAPDSDKILSSVGKSEPAKGGNLVDISKVKLLESIIEEDKDMMKKSIDSFNTVFTYAQNSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDSNQNDTTLKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASATVMKSLLRLSDTMDKSTKAKYKKIVKTSVESDSSYKQTDYLSSYSDISKMKSLMEDSTISTNGLTQQLKIYNDMDRVTYHNKGLDFAFGLSMTSKNVARYESINGENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKSTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANDYKLYKDDTQTTNSDNQETNSLFLESTNSTQNNIGYHFLNESKITVKKESHTGKWSDINKSQKDIQKTDEYYEVTQKHSNTDSKYAYVLYPGLSKDVFKSKASKVTVVKQEDDFHVVKDNESVWAGINYSDSAKTFEINNTKVEVKAKGMFILTKKDDNTYECSFYNPESTNSVSDIESKISMTGYSIINKNTSTSNESGVRFELTK
>NZ_CP029653.1|WP_001791582.1|2428692_2428860_+|hypothetical-protein
MLKIWVIDCLYASTFFVDCLTVDSQLYTLTNFEKLNHYLIIIFIAHAQHKKETCQ
>NZ_CP029653.1|WP_000850000.1|2428033_2428450_-|MerR-family-transcriptional-regulator
MKTKEVVALMNISQDTLRYYEKVGVIPPVNRDENGYRIYNDNDLNWIYLVKNLRNAGVSIESLIEFCRLAQLPKNENIQAQQKQILNKQLEELNENLKTIHDARDLLQYKIDNYDNHIAKINASDNHDDNVERLWERK
>NZ_CP029653.1|WP_000204276.1|2438468_2439905_-|MarR-family-transcriptional-regulator
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILIFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKQYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>NZ_CP029653.1|WP_000170975.1|2440253_2440652_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NZ_CP029653.1|WP_001250038.1|2440665_2441103_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_CP029653.1|WP_001221836.1|2441351_2442146_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQYFHFDTDLNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSL
>NZ_CP029653.1|WP_000791607.1|2442150_2442957_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWMFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>NZ_CP029653.1|WP_000586768.1|2442946_2443807_-|energy-coupling-factor-transporter-ATPase
MIIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NZ_CP029653.1|WP_000389651.1|2443803_2444613_-|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTATEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVDQL
>NZ_CP029653.1|WP_094409958.1|2445014_2446582_-|IS3-like-element-ISSau2-family-transposase
MKTLKGALFMSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDIAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVHKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVFKKVSSIGKRDDSKRKQITAYKTIEALKHQYPIQRLCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGAKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>NZ_CP029653.1|WP_000542274.1|2446808_2447177_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NZ_CP029653.1|WP_000569649.1|2447193_2448138_-|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED

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Crispr_ID: NZ_CP029653_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029653_12

2956952-2957035

Orphan

Consensus_repeat	Method
TTTCGAAATTCTCTGTGTTGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029653_12

>merge|NZ_CP029653|12|2956952-2957035|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCCACACCCTAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC

>NZ_CP029653|12|11|2956952-2957035|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCC	ACACCCTAACTCGCATTGCCTGTAGAATTTCT
TTTCGAAATTCTCTGTGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029653.1\|WP_001054111.1\|2955062_2955632_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP029653.1\|WP_001789343.1\|2962321_2962675_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
NZ_CP029653.1\|WP_000240855.1\|2962795_2962933_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP029653.1\|WP_001573642.1\|2955884_2956280_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_CP029653.1\|WP_000742840.1\|2957253_2958093_-\|nucleoid-occlusion-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP029653.1\|WP_110183879.1\|2952680_2953430_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373922
NZ_CP029653.1\|WP_000672024.1\|2950903_2951095_+\|peptide-resistance-ABC-transporter-activity-modulator-VraH	unknown	unknown	unknown
NZ_CP029653.1\|WP_000154162.1\|2948183_2948942_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	unknown	unknown	gnl\|CDD\|224059
NZ_CP029653.1\|WP_000586234.1\|2952181_2952679_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029653.1\|WP_000491382.1\|2956347_2956701_-\|DUF3147-family-protein	unknown	unknown	gnl\|CDD\|288237
NZ_CP029653.1\|WP_001059079.1\|2954735_2954936_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP029653.1\|WP_000362509.1\|2960798_2962178_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP029653.1\|WP_000089284.1\|2953448_2954252_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NZ_CP029653.1\|WP_000215590.1\|2958135_2958855_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP029653.1\|WP_001573644.1\|2948931_2950812_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	unknown	unknown	gnl\|CDD\|376899
NZ_CP029653.1\|WP_000249657.1\|2958854_2960732_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362

Protein	Function_ID	Function_description	E-value
NZ_CP029653.1\|WP_001054111.1\|2955062_2955632_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.78153e-16
NZ_CP029653.1\|WP_001789343.1\|2962321_2962675_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	3.11548e-51
NZ_CP029653.1\|WP_000240855.1\|2962795_2962933_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
NZ_CP029653.1\|WP_001573642.1\|2955884_2956280_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.03254e-38
NZ_CP029653.1\|WP_000742840.1\|2957253_2958093_-\|nucleoid-occlusion-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.78633e-112
NZ_CP029653.1\|WP_110183879.1\|2952680_2953430_-\|hypothetical-protein	gnl\|CDD\|373922	pfam15526, Ntox21, Novel toxin 21. Bacterial genomes and plasmids encode a variety of peptide and protein toxins that mediate inter-bacterial competition. Bacteriocins are diffusible proteins that parasitize cell-envelope proteins to enter and kill bacteria. Contact-dependent growth inhibition (CDI) is one mechanism of inter-bacterial competition. Novel Toxin 21 (alternatively 16S rRNA endonuclease CdiA) belongs to a family of prokaryotic polymorphic toxin systems implicated in intra-specific conflicts. This RNase toxin found in bacterial polymorphic toxin systems, is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, with two conserved lysine residues and [DS]xDxxxH, RxG[ST] and RxxD motifs. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 4, type 5 or type 7 secretion systems. This is also referred to as the E. cloacae CdiAC. The CdiAC proteins carry a variety of sequence-diverse C-terminal domains, which represent a collection of distinct toxins. Many CdiA-CT toxins have nuclease activities. In accord with the structural homology, CdiA-CT cleaves 16S rRNA at the same site as colicin E3 and this nuclease activity is responsible for growth inhibition.	4.66273e-23
NZ_CP029653.1\|WP_000249657.1\|2958854_2960732_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP029653.1\|WP_000154162.1\|2948183_2948942_+\|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.13228e-111
NZ_CP029653.1\|WP_000491382.1\|2956347_2956701_-\|DUF3147-family-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.35852e-38
NZ_CP029653.1\|WP_001059079.1\|2954735_2954936_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.4289e-30
NZ_CP029653.1\|WP_000362509.1\|2960798_2962178_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP029653.1\|WP_000089284.1\|2953448_2954252_-\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.02571e-48
NZ_CP029653.1\|WP_000215590.1\|2958135_2958855_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.53317e-96
NZ_CP029653.1\|WP_001573644.1\|2948931_2950812_+\|peptide-resistance-ABC-transporter-permease-subunit-VraE	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	3.80447e-06

>NZ_CP029653.1|WP_000491382.1|2956347_2956701_-|DUF3147-family-protein
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL
>NZ_CP029653.1|WP_001573642.1|2955884_2956280_-|DUF3147-family-protein
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVNRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
>NZ_CP029653.1|WP_001054111.1|2955062_2955632_-|helix-turn-helix-transcriptional-regulator
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDDLVKGTIPFAPDIKAQRSLNLWTYVMLIFMTLAAILTGPLVVYWNWAWGITVIVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTGVLSFIAFVGAIILIALISMHLANKFL
>NZ_CP029653.1|WP_001059079.1|2954735_2954936_+|cold-shock-protein
MNNGTVKWFNAEKGFGFIEQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRGDQAVNVQTV
>NZ_CP029653.1|WP_000089284.1|2953448_2954252_-|S8-family-serine-peptidase
MSRNLIHLSIGVAIFIISFSFYLLNQPNNWAWSSLNICINDSKPSNVKVAILDTGINNTRINNNFVTKRYNAINNHNQITTDSNHATQVASIITYGEHKEKLIGISKSVSIYDVKVLDDNLKGDIDNIIKGITWSIKNDVNIIHMSFGFQRYNKELHDAIKNAKNKGIILVAAAGNNMDDYSDYPARFNEVYSITAIDKNNKPFIYAPTKKIDFKAPGVDVYTKGSKDELLTVNGTSFAAAYFTAYLTNNLEFRNDLPHILKEYPIK
>NZ_CP029653.1|WP_110183879.1|2952680_2953430_-|hypothetical-protein
MKNKIIILFLAIIITFTYGNFAEASVVIKEANINNSNSKINTNKINENIYSKNNRNYIDNNFKSKDLNIESSLGHDLNTDKITVDASLKDNYNNKLDKTYDVKFLRIVNENDFKAEFTDQDTGEKIIYDTNEVKASIAPVVAVLVGFIAKQGLKKAIQKYGKTVVTSMIRTSPQVAAQAAKKLGYSATKHVSHGKKVFKKNSKGRPQYISVDKDGHRGGAWKGASSIKNLGSKKTRSGTYDANLKRIGD
>NZ_CP029653.1|WP_000586234.1|2952181_2952679_-|hypothetical-protein
MIINLETQQIHFDLEHEIPYFQSPEKNRIRLDIDVLNKKQISNIINVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSADEKYVIATIKNIKNKDLIDYSLYIKKGLVEPFIVFYNQENIFYISNAVIDIISVSKDTLGYIKSEFNDHCASPY
>NZ_CP029653.1|WP_000672024.1|2950903_2951095_+|peptide-resistance-ABC-transporter-activity-modulator-VraH
MKFRELVKQSYEDLKNLTVTWYNVIALAIIVIVLSTVTTPIIGIPAGLLGGAYYLKRREEKGK
>NZ_CP029653.1|WP_001573644.1|2948931_2950812_+|peptide-resistance-ABC-transporter-permease-subunit-VraE
MTFNHIVLKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRCTREFALFQLIGLTRQNILKMLALEQMIVFIITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTILMLIIAYILILFQSSLFLKRRSILSMMKDSVKTDVTTAKVTVIEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNDFNVVASQDAQQFESKLSQQHITFSKNYYETITVDNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNVINIHLNNDLVVKGTKNETFRVTQEDKDKVYPLNLSFNSPVIEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKKKAQAIAKQFGDKIITYDDMKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI
>NZ_CP029653.1|WP_000154162.1|2948183_2948942_+|peptide-resistance-ABC-transporter-ATP-binding-subunit-VraD
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
>NZ_CP029653.1|WP_000742840.1|2957253_2958093_-|nucleoid-occlusion-protein
MKKPFSKLFGLKNKDDIIGHIEENRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFEQDVTQARDEVGKSIQAIQQTGLHVEHKDKDHEDYYEIKIRIYKR
>NZ_CP029653.1|WP_000215590.1|2958135_2958855_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNYLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>NZ_CP029653.1|WP_000249657.1|2958854_2960732_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>NZ_CP029653.1|WP_000362509.1|2960798_2962178_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>NZ_CP029653.1|WP_001789343.1|2962321_2962675_-|ribonuclease-P-protein-component
MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>NZ_CP029653.1|WP_000240855.1|2962795_2962933_-|50S-ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029653_5	5.1\|844552\|33\|NZ_CP029653\|CRISPRCasFinder	844552-844584	33	NZ_CP029653.1	1101812-1101844	1	0.97
NZ_CP029653_5	5.1\|844552\|33\|NZ_CP029653\|CRISPRCasFinder	844552-844584	33	NZ_CP029653.1	2316230-2316262	1	0.97
NZ_CP029653_5	5.1\|844552\|33\|NZ_CP029653\|CRISPRCasFinder	844552-844584	33	NZ_CP029653.1	2513730-2513762	1	0.97
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	2128126-2128161	1	0.972
NZ_CP029653_12	12.1\|2956978\|32\|NZ_CP029653\|CRISPRCasFinder	2956978-2957009	32	NZ_CP029653.1	2513699-2513730	1	0.969
NZ_CP029653_6	6.1\|974666\|26\|NZ_CP029653\|CRISPRCasFinder	974666-974691	26	NZ_CP029653.1	2255928-2255953	2	0.923
NZ_CP029653_6	6.1\|974666\|26\|NZ_CP029653\|CRISPRCasFinder	974666-974691	26	NZ_CP029653.1	2316008-2316033	2	0.923
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	323494-323529	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	404141-404176	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	553354-553389	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	809473-809508	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	844591-844626	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	1911756-1911791	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	2478301-2478336	2	0.944
NZ_CP029653_9	9.2\|2128240\|36\|NZ_CP029653\|CRT	2128240-2128275	36	NZ_CP029653.1	2619561-2619596	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	323495-323530	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	404142-404177	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	553355-553390	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	809474-809509	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	844590-844625	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	1911757-1911792	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	2478300-2478335	2	0.944
NZ_CP029653_9	9.4\|2128353\|36\|NZ_CP029653\|CRT	2128353-2128388	36	NZ_CP029653.1	2619562-2619597	2	0.944
NZ_CP029653_12	12.1\|2956978\|32\|NZ_CP029653\|CRISPRCasFinder	2956978-2957009	32	NZ_CP029653.1	844584-844615	2	0.938
NZ_CP029653_12	12.1\|2956978\|32\|NZ_CP029653\|CRISPRCasFinder	2956978-2957009	32	NZ_CP029653.1	1101902-1101933	2	0.938
NZ_CP029653_12	12.1\|2956978\|32\|NZ_CP029653\|CRISPRCasFinder	2956978-2957009	32	NZ_CP029653.1	2002142-2002173	2	0.938

1. spacer 5.1|844552|33|NZ_CP029653|CRISPRCasFinder matches to position: 1101812-1101844, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctgtgttggggccca	Protospacer
******************** ************

2. spacer 5.1|844552|33|NZ_CP029653|CRISPRCasFinder matches to position: 2316230-2316262, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatacaatttctctttgttggggccca	Protospacer
********* ***********************

3. spacer 5.1|844552|33|NZ_CP029653|CRISPRCasFinder matches to position: 2513730-2513762, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttgggaccca	Protospacer
****************************.****

4. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 2128126-2128161, mismatch: 1, identity: 0.972

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttacattgtctgtagaatttcttttcaaaattc	Protospacer
*****.******************************

5. spacer 12.1|2956978|32|NZ_CP029653|CRISPRCasFinder matches to position: 2513699-2513730, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

6. spacer 6.1|974666|26|NZ_CP029653|CRISPRCasFinder matches to position: 2255928-2255953, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cgcggccccaacacagaagctggcgg	Protospacer
** ********************.**

7. spacer 6.1|974666|26|NZ_CP029653|CRISPRCasFinder matches to position: 2316008-2316033, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
***************.*******.**

8. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 323494-323529, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

9. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 404141-404176, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaattc	Protospacer
************.****************.******

10. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 553354-553389, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

11. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 809473-809508, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtttgtagaatttcttttcgaaattc	Protospacer
************.****************.******

12. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 844591-844626, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgcctgtagaatttcttttcgaaattc	Protospacer
***********.*****************.******

13. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 1911756-1911791, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

14. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 2478301-2478336, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

15. spacer 9.2|2128240|36|NZ_CP029653|CRT matches to position: 2619561-2619596, mismatch: 2, identity: 0.944

aacttgcattgtctgtagaatttcttttcaaaattc	CRISPR spacer
aacttgcattgtctgtagaatttctttttgaaattc	Protospacer
****************************..******

16. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 323495-323530, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

17. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 404142-404177, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtttgtagaatttcttttcgaaatt	Protospacer
*************.***********.**********

18. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 553355-553390, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

19. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 809474-809509, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtttgtagaatttcttttcgaaatt	Protospacer
*************.***********.**********

20. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 844590-844625, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgcctgtagaatttcttttcgaaatt	Protospacer
************.************.**********

21. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 1911757-1911792, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

22. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 2478300-2478335, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

23. spacer 9.4|2128353|36|NZ_CP029653|CRT matches to position: 2619562-2619597, mismatch: 2, identity: 0.944

caacttgcattgtctgtagaatttcctttcgaaatt	CRISPR spacer
caacttgcattgtctgtagaatttctttttgaaatt	Protospacer
*************************.***.******

24. spacer 12.1|2956978|32|NZ_CP029653|CRISPRCasFinder matches to position: 844584-844615, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

25. spacer 12.1|2956978|32|NZ_CP029653|CRISPRCasFinder matches to position: 1101902-1101933, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacttgcattgcctgtagaatttct	Protospacer
******.****.********************

26. spacer 12.1|2956978|32|NZ_CP029653|CRISPRCasFinder matches to position: 2002142-2002173, mismatch: 2, identity: 0.938

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacgcgcattgcctgtagaatttct	Protospacer
******.*** *********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029653_1	1.11\|62029\|34\|NZ_CP029653\|PILER-CR	62029-62062	34	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	26794-26827	2	0.941
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	MK936475	Staphylococcus phage SA03-CTH2, complete genome	14281-14314	2	0.941
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	2846-2879	2	0.941
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	MK922548	Staphylococcus phage SA46-CTH4, complete genome	3204-3237	2	0.941
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	MK922547	Staphylococcus phage SA30-CTH2, complete genome	3197-3230	2	0.941
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	KJ210330	Staphylococcus phage GRCS, complete genome	3491-3524	2	0.941
NZ_CP029653_1	1.22\|62031\|32\|NZ_CP029653\|CRISPRCasFinder	62031-62062	32	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	26794-26825	2	0.938
NZ_CP029653_1	1.33\|61959\|35\|NZ_CP029653\|CRT	61959-61993	35	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	2846-2880	2	0.943
NZ_CP029653_1	1.33\|61959\|35\|NZ_CP029653\|CRT	61959-61993	35	MK922548	Staphylococcus phage SA46-CTH4, complete genome	3204-3238	2	0.943
NZ_CP029653_1	1.33\|61959\|35\|NZ_CP029653\|CRT	61959-61993	35	MK922547	Staphylococcus phage SA30-CTH2, complete genome	3197-3231	2	0.943
NZ_CP029653_1	1.33\|61959\|35\|NZ_CP029653\|CRT	61959-61993	35	KJ210330	Staphylococcus phage GRCS, complete genome	3491-3525	2	0.943
NZ_CP029653_1	1.33\|61959\|35\|NZ_CP029653\|CRT	61959-61993	35	MK936475	Staphylococcus phage SA03-CTH2, complete genome	14280-14314	2	0.943
NZ_CP029653_1	1.34\|62030\|33\|NZ_CP029653\|CRT	62030-62062	33	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	26794-26826	2	0.939
NZ_CP029653_1	1.10\|61958\|36\|NZ_CP029653\|PILER-CR	61958-61993	36	MK936475	Staphylococcus phage SA03-CTH2, complete genome	14279-14314	3	0.917
NZ_CP029653_1	1.10\|61958\|36\|NZ_CP029653\|PILER-CR	61958-61993	36	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	2846-2881	3	0.917
NZ_CP029653_1	1.10\|61958\|36\|NZ_CP029653\|PILER-CR	61958-61993	36	MK922548	Staphylococcus phage SA46-CTH4, complete genome	3204-3239	3	0.917
NZ_CP029653_1	1.10\|61958\|36\|NZ_CP029653\|PILER-CR	61958-61993	36	MK922547	Staphylococcus phage SA30-CTH2, complete genome	3197-3232	3	0.917
NZ_CP029653_1	1.10\|61958\|36\|NZ_CP029653\|PILER-CR	61958-61993	36	KJ210330	Staphylococcus phage GRCS, complete genome	3491-3526	3	0.917
NZ_CP029653_1	1.23\|62100\|34\|NZ_CP029653\|CRISPRCasFinder	62100-62133	34	NZ_CP043848	Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence	50879-50912	6	0.824
NZ_CP029653_1	1.35\|62099\|35\|NZ_CP029653\|CRT	62099-62133	35	NZ_CP043848	Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence	50879-50913	6	0.829
NZ_CP029653_2	2.2\|70997\|41\|NZ_CP029653\|CRISPRCasFinder	70997-71037	41	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	31442-31482	6	0.854
NZ_CP029653_2	2.2\|70997\|41\|NZ_CP029653\|CRISPRCasFinder	70997-71037	41	KY653129	Staphylococcus phage IME1365_01, complete genome	11951-11991	6	0.854
NZ_CP029653_2	2.5\|70996\|42\|NZ_CP029653\|CRT	70996-71037	42	KY653129	Staphylococcus phage IME1365_01, complete genome	11951-11992	7	0.833
NZ_CP029653_2	2.5\|70996\|42\|NZ_CP029653\|CRT	70996-71037	42	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	31441-31482	7	0.833
NZ_CP029653_8	8.1\|2117505\|35\|NZ_CP029653\|CRISPRCasFinder	2117505-2117539	35	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	270871-270905	7	0.8
NZ_CP029653_1	1.21\|61960\|34\|NZ_CP029653\|CRISPRCasFinder	61960-61993	34	KR131711	Fusobacterium phage Funu2 supercont1.1, partial genome	26442-26475	8	0.765
NZ_CP029653_3	3.1\|690183\|29\|NZ_CP029653\|CRISPRCasFinder	690183-690211	29	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	142439-142467	8	0.724
NZ_CP029653_1	1.19\|61816\|35\|NZ_CP029653\|CRISPRCasFinder	61816-61850	35	AP014336	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, * SEQUENCING IN PROGRESS *	7580-7614	9	0.743
NZ_CP029653_1	1.19\|61816\|35\|NZ_CP029653\|CRISPRCasFinder	61816-61850	35	AP013668	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C107A-MedDCM-OCT-S23-C39, * SEQUENCING IN PROGRESS *	12965-12999	9	0.743
NZ_CP029653_1	1.19\|61816\|35\|NZ_CP029653\|CRISPRCasFinder	61816-61850	35	AP013410	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C107A-MedDCM-OCT-S27-C42	17610-17644	9	0.743

1. spacer 1.11|62029|34|NZ_CP029653|PILER-CR matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.941

ctcatctttcatgtcactgattaattcatttgta	CRISPR spacer
ctcatctttcatatcattgattaattcatttgta	Protospacer
************.***.*****************

2. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

3. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataaaaatatttttgg	Protospacer
*******.*********************** **

4. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

5. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

6. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataaaaatatttttgg	Protospacer
*******.*********************** **

7. spacer 1.22|62031|32|NZ_CP029653|CRISPRCasFinder matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.938

catctttcatgtcactgattaattcatttgta	CRISPR spacer
catctttcatatcattgattaattcatttgta	Protospacer
**********.***.*****************

8. spacer 1.33|61959|35|NZ_CP029653|CRT matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 2, identity: 0.943

aagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aagttaacagcattacctaataaaaatatttttgg	Protospacer
********.*********************** **

9. spacer 1.33|61959|35|NZ_CP029653|CRT matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 2, identity: 0.943

aagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aagttaacagcattacctaataagaatattttagg	Protospacer
********.**************.***********

10. spacer 1.33|61959|35|NZ_CP029653|CRT matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 2, identity: 0.943

aagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aagttaacagcattacctaataagaatattttagg	Protospacer
********.**************.***********

11. spacer 1.33|61959|35|NZ_CP029653|CRT matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 2, identity: 0.943

aagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aagttaacagcattacctaataaaaatatttttgg	Protospacer
********.*********************** **

12. spacer 1.33|61959|35|NZ_CP029653|CRT matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 2, identity: 0.943

aagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aagttaacagcattacctaataagaatattttagg	Protospacer
********.**************.***********

13. spacer 1.34|62030|33|NZ_CP029653|CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.939

tcatctttcatgtcactgattaattcatttgta	CRISPR spacer
tcatctttcatatcattgattaattcatttgta	Protospacer
***********.***.*****************

14. spacer 1.10|61958|36|NZ_CP029653|PILER-CR matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

15. spacer 1.10|61958|36|NZ_CP029653|PILER-CR matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataaaaatatttttgg	Protospacer
 ********.*********************** **

16. spacer 1.10|61958|36|NZ_CP029653|PILER-CR matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

17. spacer 1.10|61958|36|NZ_CP029653|PILER-CR matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

18. spacer 1.10|61958|36|NZ_CP029653|PILER-CR matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataaaaatatttttgg	Protospacer
 ********.*********************** **

19. spacer 1.23|62100|34|NZ_CP029653|CRISPRCasFinder matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

gtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
ggaatagttgctcgataggtaataaaacgtttac	Protospacer
* ***********.****************. ..

20. spacer 1.35|62099|35|NZ_CP029653|CRT matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.829

ggtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
gggaatagttgctcgataggtaataaaacgtttac	Protospacer
** ***********.****************. ..

21. spacer 2.2|70997|41|NZ_CP029653|CRISPRCasFinder matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcatatactcccttgccatgtattaattctggaccacg	Protospacer
 *.* *********.**.**********************

22. spacer 2.2|70997|41|NZ_CP029653|CRISPRCasFinder matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcataaactcctttgccatgtattaattctggaccacg	Protospacer
 *.* *** ********.**********************

23. spacer 2.5|70996|42|NZ_CP029653|CRT matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcataaactcctttgccatgtattaattctggaccacg	Protospacer
. *.* *** ********.**********************

24. spacer 2.5|70996|42|NZ_CP029653|CRT matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcatatactcccttgccatgtattaattctggaccacg	Protospacer
. *.* *********.**.**********************

25. spacer 8.1|2117505|35|NZ_CP029653|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 7, identity: 0.8

ctgcattgcctgtagaatttcttttttcgaaattc	CRISPR spacer
ctgcattacctgtagcatttcttttttcaactacc	Protospacer
*******.******* ************.*   .*

26. spacer 1.21|61960|34|NZ_CP029653|CRISPRCasFinder matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 8, identity: 0.765

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
aattaactgcattatctaataaaaatggttactg	Protospacer
*.***** ******.***********. **   *

27. spacer 3.1|690183|29|NZ_CP029653|CRISPRCasFinder matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 8, identity: 0.724

ccgcacaactgcataaatccctctaatcg	CRISPR spacer
attcacaactatataaatccctctaaatt	Protospacer
 . *******..************** .

28. spacer 1.19|61816|35|NZ_CP029653|CRISPRCasFinder matches to AP014336 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
agtatcggggatctttcatcatttgtcttacatca	Protospacer
 .  *. *  ************** **********

29. spacer 1.19|61816|35|NZ_CP029653|CRISPRCasFinder matches to AP013668 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C107A-MedDCM-OCT-S23-C39, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
aatatcttttatcattcatcatttcttttacatca	Protospacer
 *  *.. *.*** ************.********

30. spacer 1.19|61816|35|NZ_CP029653|CRISPRCasFinder matches to AP013410 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C107A-MedDCM-OCT-S27-C42) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
aatatcttttatcattcatcatttcttttacatca	Protospacer
 *  *.. *.*** ************.********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

787856 : 795676

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244416.1\|787856_788912_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|788911_789598_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|789572_790046_-	DoxX family protein	NA	NA	NA	NA
WP_001093552.1\|790387_790828_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637686.1\|791107_791692_-	hypothetical protein	NA	NA	NA	NA
WP_001062968.1\|791790_792504_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|792507_792927_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|792928_793597_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604508.1\|793947_794541_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
WP_001217804.1\|794524_795676_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_2

807648 : 821786

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663016.1\|807648_808707_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-20	26.5
WP_000197262.1\|808865_809408_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429002.1\|809959_810877_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	8.2e-07	22.0
WP_031788440.1\|810967_811069_+	hypothetical protein	NA	NA	NA	NA
WP_000193750.1\|811146_812652_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930016.1\|812991_813492_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	66.2
WP_001068491.1\|813511_814378_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|815179_815578_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001574690.1\|815540_817646_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
WP_000562498.1\|817765_818737_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000876311.1\|819113_820085_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
WP_001574687.1\|820071_821028_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	60.0
WP_110183820.1\|821024_821786_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1

DBSCAN-SWA_3

838075 : 902522

Staphylococcus_phage(42.42%)

integrase,coat,terminase,transposase

attL 839926:839942|attR 895205:895221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110183821.1\|838075_839746_-\|transposase	IS1182-like element ISSep1 family transposase	A0ZS58	Staphylococcus_virus	5.5e-243	77.4
839926:839942	attL	NA	NA	NA	NA
WP_001574591.1\|840393_842925_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_001791369.1\|842966_843065_+	hypothetical protein	NA	NA	NA	NA
WP_098827697.1\|843239_844349_+	peptide chain release factor 2	NA	NA	NA	NA
WP_000749385.1\|845118_845958_+	CHAP domain-containing protein	A0A2H4J675	uncultured_Caudovirales_phage	3.5e-12	42.2
WP_000538141.1\|846131_846782_+	HD domain-containing protein	NA	NA	NA	NA
WP_000638419.1\|846778_847015_+	CsbA family protein	NA	NA	NA	NA
WP_000229253.1\|847283_849269_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_000662687.1\|849276_852123_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.2
WP_000958224.1\|852733_853666_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_000508984.1\|853671_854514_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_001224791.1\|854521_855007_+	acetyltransferase	NA	NA	NA	NA
WP_000057557.1\|855014_856454_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_000134963.1\|856520_857456_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-84	49.2
WP_000369719.1\|858107_859019_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	36.1
WP_001248939.1\|859015_860011_+	YvcK family protein	A1IMD5	Streptococcus_phage	4.8e-53	41.9
WP_001574586.1\|860119_861064_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.4e-54	40.6
WP_000121211.1\|861122_862070_-\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_001049165.1\|862706_863294_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.2e-53	55.3
WP_000675909.1\|863475_865110_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_000816311.1\|865316_866219_-	TIGR01777 family protein	NA	NA	NA	NA
WP_000070826.1\|866921_867551_+	DUF4887 domain-containing protein	NA	NA	NA	NA
WP_000654027.1\|868044_869058_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_000279414.1\|869110_870121_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001074749.1\|870259_871450_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_001260089.1\|871571_872333_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_001085498.1\|872335_873853_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_001121760.1\|873982_875287_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	6.7e-196	80.7
WP_000785248.1\|875623_876082_+	hypothetical protein	NA	NA	NA	NA
WP_000556760.1\|876148_876382_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_001165967.1\|876510_877251_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_001050041.1\|877284_879657_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.9e-92	38.8
WP_001085185.1\|879678_880143_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
WP_025174610.1\|880705_881815_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	5.3e-77	44.9
WP_000272128.1\|881804_882734_-	helix-turn-helix transcriptional regulator	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
WP_000163542.1\|882921_883140_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000850930.1\|883291_883702_+	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.4e-59	85.8
WP_001103953.1\|883702_883996_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
WP_001574576.1\|884083_884953_+	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	2.7e-161	96.2
WP_001574574.1\|884969_886427_+	hypothetical protein	A0A1W6JQD6	Staphylococcus_phage	1.0e-277	96.3
WP_001039168.1\|886727_887090_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
WP_000998182.1\|887091_887376_+	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
WP_001019780.1\|887372_888014_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	5.9e-113	94.4
WP_001574572.1\|888530_888872_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	9.3e-57	97.3
WP_001574571.1\|888883_889462_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	2.4e-28	38.4
WP_000853281.1\|889479_889698_+	hypothetical protein	NA	NA	NA	NA
WP_001574570.1\|889748_890276_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	6.4e-81	90.9
WP_072326620.1\|890407_890620_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	5.1e-29	88.6
WP_001574567.1\|890616_891186_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	4.3e-99	96.3
WP_070879998.1\|891326_892319_+	Abi family protein	A0A0S2MYH0	Enterococcus_phage	2.6e-27	29.5
WP_001574563.1\|892372_893161_+	hypothetical protein	NA	NA	NA	NA
WP_110183817.1\|893376_895023_-\|transposase	IS1182-like element ISSau3 family transposase	Q9MBP7	Staphylococcus_prophage	3.0e-294	99.6
WP_001574562.1\|895312_895867_-	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	1.8e-94	98.9
895205:895221	attR	NA	NA	NA	NA
WP_000278088.1\|896655_897456_+	staphylococcal enterotoxin type C3	A0A097PAT7	Streptococcus_pyogenes_phage	6.1e-51	47.5
WP_001574561.1\|897622_898345_-	exotoxin	A0A1X9H080	Staphylococcus_phage	1.2e-26	34.9
WP_000999096.1\|899184_899799_+	stage II sporulation protein M	NA	NA	NA	NA
WP_001574560.1\|900086_900815_-	DUF5067 domain-containing protein	H9A0X8	Staphylococcus_phage	4.8e-18	36.8
WP_000277741.1\|900875_902522_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0

DBSCAN-SWA_4

991777 : 1059714

Planktothrix_phage(18.75%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277726.1\|991777_993424_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	6.9e-291	99.1
WP_001124494.1\|993495_994812_-	CoA-disulfide reductase	NA	NA	NA	NA
WP_001182437.1\|994863_995688_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_000390575.1\|995801_996110_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_001574532.1\|996689_998504_+	acetyltransferase	B5WZU0	Pseudomonas_phage	3.0e-37	33.9
WP_000353950.1\|998706_1001316_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	5.5e-117	34.3
WP_001047061.1\|1001374_1002244_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000619360.1\|1002353_1003499_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.5e-05	26.0
WP_000404423.1\|1003482_1004124_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_001037449.1\|1004116_1005235_+	membrane protein	NA	NA	NA	NA
WP_000769795.1\|1005218_1005734_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000769690.1\|1006044_1006479_+	MAP domain-containing protein	NA	NA	NA	NA
WP_000682089.1\|1006735_1006921_-	YjzD family protein	NA	NA	NA	NA
WP_001100526.1\|1007215_1008157_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_000081181.1\|1008168_1009413_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_000915161.1\|1009467_1009839_-	DUF3899 domain-containing protein	NA	NA	NA	NA
WP_000521533.1\|1010081_1011008_+	ABC transporter permease	NA	NA	NA	NA
WP_000829637.1\|1011007_1012078_+	ABC transporter permease	NA	NA	NA	NA
WP_000140043.1\|1012093_1013176_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-18	30.1
WP_000786746.1\|1013165_1014107_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-22	34.1
WP_000197096.1\|1014125_1015781_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000517177.1\|1015992_1016259_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000121211.1\|1016250_1017198_-\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_073392975.1\|1017312_1018782_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067041.1\|1018832_1019819_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-15	30.0
WP_000427776.1\|1019821_1020802_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-16	31.6
WP_001574526.1\|1020794_1021445_+	ABC transporter permease	NA	NA	NA	NA
WP_001574524.1\|1021456_1022338_+	ABC transporter permease	NA	NA	NA	NA
WP_094409958.1\|1022426_1023994_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_000277726.1\|1024289_1025936_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	6.9e-291	99.1
WP_000448933.1\|1025962_1026952_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_000258003.1\|1027246_1027642_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_001217728.1\|1028012_1028732_+	adaptor protein MecA	NA	NA	NA	NA
WP_000959276.1\|1028852_1029839_+	competence protein CoiA	NA	NA	NA	NA
WP_000082722.1\|1029886_1031695_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	9.3e-47	24.5
WP_000896691.1\|1032154_1032961_-	DsbA family protein	NA	NA	NA	NA
WP_000214067.1\|1032983_1033349_-	hypothetical protein	NA	NA	NA	NA
WP_000224620.1\|1033452_1034046_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_001242102.1\|1034231_1034579_+	hypothetical protein	NA	NA	NA	NA
WP_001077683.1\|1034595_1035231_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_001270834.1\|1035247_1036057_+	NAD kinase	NA	NA	NA	NA
WP_000669938.1\|1036053_1036908_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000062404.1\|1036928_1038314_+	magnesium transporter	NA	NA	NA	NA
WP_000395156.1\|1038323_1040168_+	sodium:proton antiporter	NA	NA	NA	NA
WP_000933195.1\|1040445_1041216_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_094409958.1\|1041336_1042903_+\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_000933105.1\|1043074_1044160_-	AI-2E family transporter	NA	NA	NA	NA
WP_110183826.1\|1046136_1046895_+	esterase family protein	NA	NA	NA	NA
WP_001060544.1\|1047060_1047786_+	hypothetical protein	NA	NA	NA	NA
WP_000355329.1\|1047787_1048639_+	hypothetical protein	NA	NA	NA	NA
WP_000600387.1\|1049381_1049891_+	hypothetical protein	NA	NA	NA	NA
WP_001794241.1\|1050003_1051212_-	MFS transporter	NA	NA	NA	NA
WP_000258649.1\|1051171_1052347_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_000340133.1\|1052778_1054263_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_001794242.1\|1054243_1054504_+	hypothetical protein	NA	NA	NA	NA
WP_001049957.1\|1054503_1056066_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
WP_000928413.1\|1056367_1057171_+	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_110183827.1\|1057389_1059714_+\|protease	serine protease	W5SAB9	Pithovirus	1.4e-10	27.1

DBSCAN-SWA_5

1103282 : 1111755

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861570.1\|1103282_1103765_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
WP_001010391.1\|1103751_1104876_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174050.1\|1104879_1105584_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	41.6
WP_000848351.1\|1105583_1105847_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666808.1\|1105848_1106520_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032734.1\|1106512_1108702_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.1e-140	39.2
WP_000483708.1\|1108680_1110165_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.7
WP_000030814.1\|1110157_1111186_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	41.4
WP_001574484.1\|1111188_1111755_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.7e-29	40.1

DBSCAN-SWA_6

1163505 : 1247848

103

Staphylococcus_phage(67.65%)

tail,portal,holin,tRNA,plate,transposase,terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001574467.1\|1163505_1163988_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.7e-28	45.6
WP_001574465.1\|1164049_1165189_-	nucleotidyltransferase	NA	NA	NA	NA
WP_000872158.1\|1165315_1165873_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_000290472.1\|1165952_1166126_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_000861313.1\|1166242_1167628_-	recombinase family protein	I1W625	Staphylococcus_phage	2.5e-265	100.0
WP_110183829.1\|1167834_1168515_-	hypothetical protein	A0A2H4PQQ5	Staphylococcus_phage	1.9e-122	99.6
WP_001208485.1\|1168550_1169321_-	helix-turn-helix domain-containing protein	A0A1X9H0P5	Staphylococcus_phage	1.2e-136	96.5
WP_000338187.1\|1169480_1169702_+	DUF739 family protein	A0A1X9H090	Staphylococcus_phage	7.6e-36	100.0
WP_000435356.1\|1169725_1170169_+	hypothetical protein	A0A0H3U2S6	Staphylococcus_phage	8.9e-76	100.0
WP_000939502.1\|1170183_1170327_+	hypothetical protein	Q4ZAL7	Staphylococcus_virus	1.9e-16	100.0
WP_000642493.1\|1170316_1170526_-	hypothetical protein	W5R9J5	Staphylococcus_phage	5.9e-30	98.6
WP_001148594.1\|1170582_1171326_+	oxidoreductase	S4SW96	Staphylococcus_phage	2.3e-137	100.0
WP_000395455.1\|1171501_1171732_-	hypothetical protein	C8CGY3	Staphylococcus_phage	2.3e-35	100.0
WP_000066027.1\|1171911_1172073_+	DUF1270 family protein	D2JGJ6	Staphylococcus_phage	2.1e-19	96.2
WP_000291076.1\|1172166_1172427_+	DUF1108 family protein	Q4ZDR5	Staphylococcus_virus	5.8e-43	98.8
WP_000815403.1\|1172436_1172658_+	DUF2483 domain-containing protein	A0A1X9H047	Staphylococcus_phage	1.2e-33	100.0
WP_000134097.1\|1172650_1173439_+	ATP-binding protein	Q4ZBM5	Staphylococcus_phage	2.6e-142	100.0
WP_000704705.1\|1173467_1174019_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
WP_001199445.1\|1174031_1174703_+	hypothetical protein	W5R8I8	Staphylococcus_phage	5.2e-128	100.0
WP_000371252.1\|1174809_1175658_-	DUF4393 domain-containing protein	W5R9J9	Staphylococcus_phage	3.8e-160	100.0
WP_000190225.1\|1175722_1176493_+	hypothetical protein	W5R8N2	Staphylococcus_phage	6.9e-116	99.2
WP_000803070.1\|1176503_1177283_+	ATP-binding protein	A0A1X9H042	Staphylococcus_phage	1.4e-145	100.0
WP_000256593.1\|1177276_1177435_+	hypothetical protein	Q4ZBL5	Staphylococcus_phage	9.9e-22	96.2
WP_001123674.1\|1177447_1177669_+	DUF3269 family protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
WP_000049804.1\|1177679_1178084_+	DUF1064 domain-containing protein	A0A1W6JPX0	Staphylococcus_phage	3.6e-68	100.0
WP_001187235.1\|1178088_1178274_+	DUF3113 family protein	Q4ZAY3	Staphylococcus_virus	1.4e-27	100.0
WP_001140277.1\|1178274_1178646_+	hypothetical protein	Q4ZAY2	Staphylococcus_virus	2.2e-56	99.2
WP_001126829.1\|1178646_1178895_+	hypothetical protein	Q4ZAY1	Staphylococcus_virus	1.4e-41	100.0
WP_001065108.1\|1178908_1179154_+	DUF1024 family protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
WP_000185690.1\|1179150_1179687_+	hypothetical protein	Q9MBR0	Staphylococcus_prophage	4.6e-95	99.4
WP_001209218.1\|1179723_1179897_+	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	1.1e-24	98.2
WP_110183830.1\|1179913_1180159_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	1.4e-35	98.8
WP_110183831.1\|1180155_1180362_+	DUF1381 domain-containing protein	A0A2I6PEA2	Staphylococcus_phage	3.0e-18	95.6
WP_031929309.1\|1180358_1180532_+	transcriptional regulator	A0A0H3U4U1	Staphylococcus_phage	1.4e-21	98.2
WP_009560343.1\|1180532_1180679_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	3.7e-15	97.9
WP_000162696.1\|1180702_1181125_+	RinA family phage transcriptional activator	S4V7K2	Staphylococcus_phage	1.6e-74	100.0
WP_001003271.1\|1181311_1181752_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	4.8e-74	100.0
WP_000169946.1\|1181738_1183016_+\|terminase	PBSX family phage terminase large subunit	A0EWS5	Staphylococcus_virus	3.0e-249	100.0
WP_000921875.1\|1183026_1184565_+\|portal	phage portal protein	S4V6D8	Staphylococcus_phage	1.9e-290	99.0
WP_001824752.1\|1185649_1185823_+	hypothetical protein	NA	NA	NA	NA
WP_000354305.1\|1185954_1186569_+	DUF4355 domain-containing protein	I1W646	Staphylococcus_phage	2.9e-40	100.0
WP_110183832.1\|1186582_1187557_+\|capsid	phage major capsid protein	Q8SDU5	Staphylococcus_phage	1.1e-182	99.4
WP_001114085.1\|1187578_1187866_+	hypothetical protein	S4V6D9	Staphylococcus_phage	4.7e-46	100.0
WP_000208959.1\|1187874_1188207_+\|head,tail	phage head-tail connector protein	E0Y3L2	Staphylococcus_virus	7.1e-54	100.0
WP_001268304.1\|1188203_1188506_+	hypothetical protein	E0Y3L3	Staphylococcus_virus	2.8e-49	96.0
WP_001017811.1\|1188505_1188853_+	HK97 gp10 family phage protein	I1W643	Staphylococcus_phage	5.3e-60	100.0
WP_000188652.1\|1188864_1189248_+	hypothetical protein	E0Y3L5	Staphylococcus_virus	2.6e-68	100.0
WP_000002583.1\|1189266_1189848_+\|tail	phage major tail protein, TP901-1 family	Q8SDU0	Staphylococcus_phage	4.9e-106	100.0
WP_001100161.1\|1189910_1190276_+	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
WP_000105584.1\|1190305_1190650_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
WP_038803998.1\|1190666_1194131_+	membrane protein	Q4ZDU6	Staphylococcus_virus	6.0e-268	95.1
WP_001557971.1\|1194143_1195091_+\|tail	phage tail family protein	Q8SDT6	Staphylococcus_phage	6.1e-183	99.7
WP_031906367.1\|1195099_1197001_+	peptidase	I1W634	Staphylococcus_phage	0.0e+00	99.7
WP_110183833.1\|1197015_1198926_+	hypothetical protein	Q4ZDD6	Staphylococcus_virus	0.0e+00	97.3
WP_110183834.1\|1198925_1200749_+\|plate	BppU family phage baseplate upper protein	W5R8J5	Staphylococcus_phage	1.3e-293	99.0
WP_000705907.1\|1200748_1201126_+	DUF2977 domain-containing protein	Q4ZDT8	Staphylococcus_virus	8.1e-54	99.2
WP_001800921.1\|1201129_1201303_+	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
WP_110183835.1\|1201343_1201643_+	DUF2951 domain-containing protein	A0A0F6N3M6	Staphylococcus_phage	5.3e-40	87.9
WP_110183836.1\|1201779_1203678_+	CHAP domain-containing protein	S4V9N2	Staphylococcus_phage	0.0e+00	98.6
WP_110183837.1\|1203690_1204863_+\|plate	BppU family phage baseplate upper protein	A0EWN2	Staphylococcus_virus	2.7e-196	99.2
WP_000398860.1\|1204868_1205264_+	hypothetical protein	Q8SDS9	Staphylococcus_phage	1.6e-68	100.0
WP_001573893.1\|1205319_1205757_+\|holin	phage holin	B2ZZ05	Staphylococcus_phage	5.9e-72	98.6
WP_001573894.1\|1205737_1207183_+	CHAP domain-containing protein	Q4ZB16	Staphylococcus_virus	5.0e-293	99.2
WP_001573895.1\|1207475_1208201_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_001574463.1\|1208610_1210539_-	heme uptake protein IsdB	NA	NA	NA	NA
WP_000160848.1\|1210740_1211805_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA
WP_000789812.1\|1212013_1212697_+	heme uptake protein IsdC	NA	NA	NA	NA
WP_001246693.1\|1212696_1213773_+	hypothetical protein	NA	NA	NA	NA
WP_001220199.1\|1213769_1214648_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
WP_001548422.1\|1214657_1215626_+	iron ABC transporter permease	NA	NA	NA	NA
WP_001242414.1\|1215687_1216422_+	class B sortase	NA	NA	NA	NA
WP_000670950.1\|1216440_1216764_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA
WP_010956599.1\|1216800_1216908_+	hypothetical protein	NA	NA	NA	NA
WP_000435380.1\|1217147_1217888_+	RNA methyltransferase	NA	NA	NA	NA
WP_000003566.1\|1218268_1219327_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5
WP_000908974.1\|1219326_1221729_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_001284266.1\|1222030_1222969_-	ribonuclease HIII	NA	NA	NA	NA
WP_000046704.1\|1223344_1223611_+	cell division protein ZapA	NA	NA	NA	NA
WP_000582582.1\|1223611_1224133_+	CvpA family protein	NA	NA	NA	NA
WP_001574457.1\|1224205_1225918_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.8e-15	24.3
WP_001249267.1\|1225927_1228276_+	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	7.2e-15	25.1
WP_001018928.1\|1228448_1228763_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.6e-25	46.6
WP_001791491.1\|1228825_1228921_-	hypothetical protein	NA	NA	NA	NA
WP_001574455.1\|1229086_1230868_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_000079317.1\|1231191_1231806_+	succinate dehydrogenase cytochrome B558	NA	NA	NA	NA
WP_000818278.1\|1231857_1233624_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_000139709.1\|1233623_1234439_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_001574452.1\|1234677_1235478_+	glutamate racemase	NA	NA	NA	NA
WP_000659309.1\|1235489_1236077_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000049496.1\|1236069_1236573_+	metallophosphoesterase	NA	NA	NA	NA
WP_000822906.1\|1236702_1236870_+	hypothetical protein	NA	NA	NA	NA
WP_000739205.1\|1237063_1237381_+	fibrinogen-binding protein	NA	NA	NA	NA
WP_031788461.1\|1237679_1237763_-	hypothetical protein	NA	NA	NA	NA
WP_000739578.1\|1237728_1238115_-	formyl peptide receptor-like 1 inhibitory protein	NA	NA	NA	NA
WP_094409958.1\|1239241_1240809_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_001574449.1\|1241212_1241710_+	complement convertase inhibitor Efb	NA	NA	NA	NA
WP_001574448.1\|1241861_1242212_+	complement inhibitor SCIN-C	A7TWS0	Staphylococcus_phage	4.2e-20	50.0
WP_001032820.1\|1242460_1242646_-	hypothetical protein	NA	NA	NA	NA
WP_000231331.1\|1243255_1243489_-	hypothetical protein	NA	NA	NA	NA
WP_000857479.1\|1243942_1244902_-	beta-channel forming cytolysin	A0A2H4PQH7	Staphylococcus_phage	1.9e-35	30.6
WP_000765703.1\|1245569_1245716_+	hypothetical protein	NA	NA	NA	NA
WP_001801391.1\|1245672_1245900_+	hypothetical protein	Q4ZBW5	Staphylococcus_virus	1.9e-18	67.7
WP_110183838.1\|1246201_1247848_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	1.8e-294	99.6

DBSCAN-SWA_7

1416341 : 1423847

Staphylococcus_phage(71.43%)

capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001659797.1\|1416341_1416539_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
WP_001071312.1\|1417240_1417453_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.6e-19	72.5
WP_001002343.1\|1417749_1417956_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.9e-12	56.7
WP_031788482.1\|1418657_1418768_+	hypothetical protein	NA	NA	NA	NA
WP_000006110.1\|1419160_1419346_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_000121213.1\|1419557_1420505_-\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.6e-183	99.7
WP_000477487.1\|1420931_1421348_+	hypothetical protein	NA	NA	NA	NA
WP_001791412.1\|1421779_1421986_-\|transposase	transposase	A0A059NT77	Lactococcus_phage	4.5e-14	58.1
WP_000585095.1\|1422869_1423121_+	hypothetical protein	NA	NA	NA	NA
WP_077670290.1\|1423181_1423847_+\|capsid	minor capsid protein	A0A1J0MF61	Staphylococcus_phage	4.6e-60	53.0

DBSCAN-SWA_8

1641750 : 1647131

Streptococcus_phage(100.0%)

integrase,transposase

attL 1638758:1638771|attR 1643853:1643866

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1638758:1638771	attL	NA	NA	NA	NA
WP_001291561.1\|1641750_1642968_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|1643049_1643253_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|1643713_1643944_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
1643853:1643866	attR	NA	NA	NA	NA
WP_000804885.1\|1643940_1644363_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_001227347.1\|1644867_1645221_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|1645280_1645448_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001573639.1\|1645880_1647131_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	2.0e-109	59.4

DBSCAN-SWA_9

1652018 : 1665726

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001574275.1\|1652018_1653938_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	95.0
WP_001791010.1\|1653953_1654070_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224319.1\|1654314_1655247_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
WP_001574272.1\|1655243_1656245_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.5e-190	99.7
WP_110183846.1\|1656241_1658419_-	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	5.3e-307	85.4
WP_000331160.1\|1658421_1660869_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|1660852_1661359_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|1661333_1661831_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|1661947_1662169_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|1662211_1663417_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_000813488.1\|1663595_1664981_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|1665009_1665396_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|1665411_1665726_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0

DBSCAN-SWA_10

1743608 : 1751920

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1743608_1744394_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924211.1\|1744519_1745410_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062173.1\|1745419_1746766_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	1.4e-55	34.0
WP_000683921.1\|1746879_1747980_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
WP_000624581.1\|1747982_1748660_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1748790_1749897_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217253.1\|1750120_1751920_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0

DBSCAN-SWA_11

1797577 : 1857450

uncultured_Mediterranean_phage(15.79%)

integrase,transposase,protease,tRNA

attL 1849820:1849836|attR 1862015:1862031

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000746372.1\|1797577_1798081_+\|transposase	transposase	NA	NA	NA	NA
WP_077442703.1\|1798061_1798598_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	9.9e-29	43.6
WP_000542304.1\|1800243_1801464_-	Fic family protein	Q9AZ49	Lactococcus_phage	1.1e-51	33.1
WP_000533224.1\|1801753_1802986_-	divalent metal cation transporter	NA	NA	NA	NA
WP_001261800.1\|1802997_1803750_-	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_000942731.1\|1803749_1805111_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_001019343.1\|1805124_1805574_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_000023330.1\|1805575_1806586_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_000383173.1\|1806575_1807310_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_000431312.1\|1807635_1808112_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_000848305.1\|1808762_1810031_-	U32 family peptidase	Q6DW11	Phage_TP	4.0e-36	31.7
WP_000137775.1\|1810042_1810966_-	U32 family peptidase	NA	NA	NA	NA
WP_000342261.1\|1810968_1811607_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
WP_000134779.1\|1811891_1812200_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_000939059.1\|1812214_1812643_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000426912.1\|1812646_1812907_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_025175594.1\|1812969_1815600_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
WP_110183851.1\|1815942_1818420_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	3.2e-66	28.9
WP_000567025.1\|1818421_1819090_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_000066097.1\|1819603_1820722_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000409167.1\|1820722_1821865_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.3e-33	29.3
WP_000985898.1\|1822174_1823188_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_000008061.1\|1823424_1823571_-	hypothetical protein	NA	NA	NA	NA
WP_000752909.1\|1823610_1823793_-	CsbD family protein	NA	NA	NA	NA
WP_000704122.1\|1823892_1824315_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_000102741.1\|1824399_1825674_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	6.3e-106	50.9
WP_000682640.1\|1825834_1826608_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_001791215.1\|1826607_1826736_-	hypothetical protein	NA	NA	NA	NA
WP_000044796.1\|1827068_1828835_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
WP_000590826.1\|1828850_1830113_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_000717800.1\|1830573_1831449_-	SH3 domain-containing protein	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
WP_000869979.1\|1831445_1831898_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001058583.1\|1831909_1834099_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
WP_000364542.1\|1834526_1835045_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000595001.1\|1835066_1837340_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.2e-64	29.3
WP_000749802.1\|1837542_1839822_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1840096_1840357_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1840375_1841515_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019178.1\|1841537_1842563_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001574093.1\|1842552_1843569_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_000271546.1\|1843600_1844203_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000368902.1\|1844216_1844672_-	ACT domain-containing protein	NA	NA	NA	NA
WP_000496098.1\|1844684_1845977_-	GTPase ObgE	NA	NA	NA	NA
WP_000916187.1\|1846463_1846748_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_000633692.1\|1846759_1847080_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_000457386.1\|1847085_1847394_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_001259929.1\|1847686_1848217_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_000911041.1\|1848216_1849059_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000840603.1\|1849258_1849378_-	hypothetical protein	NA	NA	NA	NA
WP_001236733.1\|1849451_1849925_-	DUF4930 family protein	NA	NA	NA	NA
1849820:1849836	attL	NA	NA	NA	NA
WP_000025835.1\|1850084_1850282_+	hypothetical protein	NA	NA	NA	NA
WP_000171861.1\|1850397_1850682_-	hypothetical protein	NA	NA	NA	NA
WP_001092058.1\|1851130_1851793_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_001072201.1\|1852301_1853033_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
WP_000067268.1\|1853158_1853941_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA
WP_000361059.1\|1854091_1854469_-\|transposase	transposase	NA	NA	NA	NA
WP_050963116.1\|1854475_1856368_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000868132.1\|1856364_1857450_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
1862015:1862031	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1973433 : 2042361

Staphylococcus_phage(93.18%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110183855.1\|1973433_1980003_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	6.4e-295	88.6
WP_000836472.1\|1980326_1980638_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-50	96.1
WP_001108722.1\|1980659_1983074_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.8
WP_001025064.1\|1983365_1984547_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
WP_000526541.1\|1984656_1985610_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
WP_000764425.1\|1985606_1986170_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.1e-99	95.7
WP_000757543.1\|1986288_1986690_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|1987262_1988090_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014937042.1\|1988092_1988212_-	hypothetical protein	NA	NA	NA	NA
WP_001196351.1\|1988323_1989325_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.0e-183	99.1
WP_001008553.1\|1989446_1989911_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-69	98.1
WP_001159032.1\|1989923_1991105_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_000493891.1\|1991115_1991748_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-112	99.0
WP_001819953.1\|1991754_1992786_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.8e-195	98.3
WP_001261683.1\|1993278_1994781_-	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
WP_000221190.1\|1995423_1995738_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
WP_110183856.1\|1995737_1997030_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.9e-215	94.7
WP_001032833.1\|1997116_1997971_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1998246_1998471_-	hypothetical protein	NA	NA	NA	NA
WP_000671059.1\|1998669_1999140_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	7.7e-70	85.8
WP_001152695.1\|1999252_1999696_+	competence protein ComK	NA	NA	NA	NA
WP_001030476.1\|1999682_2000126_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-49	77.4
WP_001168914.1\|2000423_2001059_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000492901.1\|2001225_2001846_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001096494.1\|2002303_2003017_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091444.1\|2003275_2003578_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|2003832_2004198_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623481.1\|2004194_2004548_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	97.4
WP_001573990.1\|2004797_2005631_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
WP_000366165.1\|2005842_2006751_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000933819.1\|2006875_2008069_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
WP_000109909.1\|2008440_2010033_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_001801476.1\|2010325_2011072_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-139	97.2
WP_000672010.1\|2011076_2011550_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	9.5e-84	98.1
WP_000718107.1\|2011615_2011873_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778539.1\|2011869_2012871_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.5e-183	96.7
WP_000348372.1\|2012875_2014354_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-282	97.2
WP_016186903.1\|2014512_2014968_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.5e-75	94.5
WP_001794016.1\|2015270_2015921_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.0e-51	88.4
WP_001573983.1\|2016001_2017018_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	6.6e-74	97.2
WP_000669038.1\|2017093_2017720_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.5e-81	84.1
WP_000627550.1\|2017760_2018105_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	94.7
WP_000414222.1\|2018202_2018775_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_001093574.1\|2018923_2020291_-	FRG domain-containing protein	NA	NA	NA	NA
WP_000125075.1\|2020290_2020860_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.2e-39	54.8
WP_000747804.1\|2021052_2021499_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_001801861.1\|2021948_2022044_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_001791232.1\|2022166_2022268_+	hypothetical protein	NA	NA	NA	NA
WP_001037039.1\|2022442_2022886_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000731421.1\|2022885_2023329_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_033844720.1\|2024295_2026716_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_001819963.1\|2026841_2027201_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000619920.1\|2027428_2027878_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_001053714.1\|2027920_2029531_+	hypothetical protein	NA	NA	NA	NA
WP_000095390.1\|2029545_2029845_+	secretion protein	NA	NA	NA	NA
WP_000413389.1\|2030106_2031924_-	hypothetical protein	NA	NA	NA	NA
WP_000072622.1\|2031960_2033115_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.8e-39	36.3
WP_001794363.1\|2033107_2034847_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-286	98.6
WP_001038742.1\|2035026_2035746_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.0e-129	98.3
WP_001038734.1\|2035915_2036632_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	6.6e-129	97.1
WP_001038730.1\|2036795_2037512_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	2.4e-86	64.7
WP_001038766.1\|2037678_2038395_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	5.5e-83	62.6
WP_001039022.1\|2038518_2039238_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	6.4e-124	93.7
WP_000595635.1\|2040252_2040768_+	membrane protein	NA	NA	NA	NA
WP_000711497.1\|2041014_2042361_+	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	6.7e-66	51.3

DBSCAN-SWA_13

2128955 : 2228659

114

Staphylococcus_phage(85.53%)

tail,protease,tRNA,portal,transposase,integrase,terminase,capsid,head,holin

attL 2128238:2128259|attR 2239107:2239128

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2128238:2128259	attL	NA	NA	NA	NA
WP_001573809.1\|2128955_2130383_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_000027924.1\|2130395_2131853_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_000170162.1\|2131854_2132157_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957023.1\|2132523_2134062_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831695.1\|2134150_2135350_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774552.1\|2135362_2137366_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	9.8e-114	36.1
WP_000992924.1\|2137369_2139562_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272063.1\|2139558_2140251_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|2140433_2140736_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|2140844_2142140_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827736.1\|2142990_2144157_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434532.1\|2144187_2144511_+	staphostatin A	NA	NA	NA	NA
WP_000669861.1\|2144804_2144978_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|2144958_2145561_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040861.1\|2145830_2146652_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
WP_000284434.1\|2146644_2148114_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	8.5e-107	44.5
WP_001573806.1\|2148297_2149374_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_031788442.1\|2150260_2150368_+	hypothetical protein	NA	NA	NA	NA
WP_000323171.1\|2150378_2151941_-	SLC13 family permease	NA	NA	NA	NA
WP_000275719.1\|2152145_2153243_-	pectate lyase	U5PWM6	Bacillus_phage	8.7e-48	34.6
WP_000149686.1\|2153615_2154176_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2154228_2155158_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001790680.1\|2155350_2155524_-	hypothetical protein	NA	NA	NA	NA
WP_001021224.1\|2155575_2156955_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_110183858.1\|2157074_2158103_-	lactonase family protein	NA	NA	NA	NA
WP_001284659.1\|2158562_2158943_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096371.1\|2158932_2160690_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_000733621.1\|2160796_2161642_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
WP_052997696.1\|2161692_2163372_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.8e-238	77.1
WP_000612780.1\|2163860_2164271_+	YolD-like family protein	U3PG23	Staphylococcus_phage	1.4e-30	54.2
WP_000514485.1\|2164299_2164665_-	hypothetical protein	NA	NA	NA	NA
WP_000026855.1\|2164673_2166737_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_110183859.1\|2166739_2167852_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	9.6e-10	30.5
WP_000267034.1\|2168398_2168572_-	hypothetical protein	NA	NA	NA	NA
WP_001188074.1\|2169022_2170063_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713064.1\|2170119_2170962_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033968.1\|2170958_2171516_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|2171575_2172100_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|2172220_2172784_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221650.1\|2172847_2173588_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|2173587_2174460_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645732.1\|2174456_2175137_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991315.1\|2175137_2176034_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|2176030_2176411_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681966.1\|2176668_2176845_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2177086_2177185_-	hypothetical protein	NA	NA	NA	NA
WP_001068528.1\|2177384_2178671_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001573801.1\|2178941_2180681_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669789.1\|2181638_2181818_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001791826.1\|2182128_2182389_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702262.1\|2182441_2182792_-	complement inhibitor SCIN-A	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
WP_000727645.1\|2183474_2183924_+	chemotaxis-inhibiting protein CHIPS	A0A075LZI2	Staphylococcus_phage	8.7e-79	100.0
WP_000920042.1\|2185003_2185495_-	staphylokinase	A0A075LYD3	Staphylococcus_phage	8.0e-86	100.0
WP_000861026.1\|2185685_2186441_-	CHAP domain-containing protein	A0A075LZV3	Staphylococcus_phage	1.2e-152	100.0
WP_000611512.1\|2186452_2186707_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_031762631.1\|2186758_2186866_+	hypothetical protein	NA	NA	NA	NA
WP_011447039.1\|2186918_2187095_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_000034846.1\|2187297_2188080_-	staphylococcal enterotoxin type P	A0A075M4C7	Staphylococcus_phage	1.6e-149	99.6
WP_000340977.1\|2188491_2188866_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_001262621.1\|2188921_2189209_-	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
WP_001000058.1\|2189254_2189407_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
WP_001573797.1\|2189399_2193182_-	phage minor structural protein	A0A068A201	Staphylococcus_phage	0.0e+00	99.8
WP_000567408.1\|2193197_2194682_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_001573795.1\|2194678_2199208_-\|tail	phage tail tape measure protein	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.3
WP_001096355.1\|2199452_2199803_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_071621395.1\|2199852_2200077_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_000268740.1\|2200118_2200763_-\|tail	phage tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
WP_000565498.1\|2200763_2201171_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114226.1\|2201167_2201572_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
WP_000755150.1\|2201568_2201931_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000150936.1\|2201914_2202199_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238236.1\|2202188_2202473_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
WP_001573791.1\|2202492_2203638_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	3.6e-214	99.7
WP_000642728.1\|2203661_2204399_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
WP_000025274.1\|2204382_2205570_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000625088.1\|2205585_2207247_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000402904.1\|2207243_2207588_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988332.1\|2207717_2208017_-	HNH endonuclease	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
WP_000590122.1\|2208248_2208665_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_001557462.1\|2208692_2208893_-	DUF1514 family protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
WP_000595265.1\|2208892_2209042_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000195784.1\|2209038_2209245_-	DUF1381 domain-containing protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
WP_001282077.1\|2209241_2209487_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	2.5e-35	98.8
WP_000185693.1\|2209523_2210060_-	hypothetical protein	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
WP_001065108.1\|2210056_2210302_-	DUF1024 family protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
WP_000178986.1\|2210316_2210565_-	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
WP_000111491.1\|2210561_2210819_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
WP_000101279.1\|2210818_2211190_-	hypothetical protein	A0A2I6PDG3	Staphylococcus_phage	1.4e-50	91.1
WP_000401969.1\|2211202_2211607_-	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
WP_001573784.1\|2211615_2211834_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	8.9e-37	98.6
WP_000934759.1\|2212752_2213223_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
WP_064135358.1\|2213223_2213841_-	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
WP_000180600.1\|2213921_2214842_-	recombinase RecT	A0A1P8L6F6	Staphylococcus_phage	5.1e-166	100.0
WP_001573779.1\|2214843_2216787_-	AAA family ATPase	A0A1P8L6F1	Staphylococcus_phage	0.0e+00	99.7
WP_001205732.1\|2216795_2217059_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291510.1\|2217067_2217328_-	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
WP_000165371.1\|2217332_2217635_-	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
WP_000048129.1\|2217729_2217891_-	DUF1270 family protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
WP_001120201.1\|2217887_2218211_-	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
WP_000762521.1\|2218265_2218646_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
WP_001148856.1\|2218632_2218830_-	hypothetical protein	O80075	Staphylococcus_phage	2.5e-30	100.0
WP_001148605.1\|2218845_2219598_-	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
WP_000128909.1\|2219648_2219978_+	hypothetical protein	M9NS98	Staphylococcus_phage	5.1e-52	98.2
WP_001025404.1\|2219966_2220182_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
WP_000854072.1\|2220197_2220461_-	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001031454.1\|2220594_2221308_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000759682.1\|2221323_2222256_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_000591749.1\|2222261_2222603_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000694772.1\|2222806_2222989_+	hypothetical protein	A0A2I6PDF8	Staphylococcus_phage	6.9e-27	100.0
WP_001558608.1\|2223088_2224072_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_000427213.1\|2224082_2224325_+	hypothetical protein	NA	NA	NA	NA
WP_001573776.1\|2224387_2225425_+\|integrase	site-specific integrase	Q38086	Staphylococcus_phage	6.7e-175	98.3
WP_000595617.1\|2226562_2227582_-	beta-channel forming cytolysin	A0A2I6PEU3	Staphylococcus_phage	3.4e-54	39.6
WP_000791398.1\|2227603_2228659_-	succinyl-diaminopimelate desuccinylase	A0A2I6PER8	Staphylococcus_phage	7.9e-38	34.6
2239107:2239128	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP029653.1|WP_000384171.1|1998246_1998471_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP029653.1|WP_000384171.1|1998246_1998471_-|hypothetical-protein

1998246_1998471_-

74 aa aa

1973433-2042361

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP029653_12	Orphan	12.1\|2956978\|32\|NZ_CP029653\|CRISPRCasFinder	2956978-2957009	32	2002173-2002142	2

1. spacer 12.1|2956978|32|NZ_CP029653|CRISPRCasFinder matches to NZ_CP029653 position: 2002173-2002142, mismatch: 2

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaacgcgcattgcctgtagaatttct	Protospacer
******.*** *********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029653

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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