CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	11 crisprs	csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL	5	13	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029681_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_1

427446-427577

Orphan

Consensus_repeat	Method
CAGGTTGGCGGGGCCCCAACAAAGAGAA	PILER-CR
CAGGTTGGCGGGGCCCCAACACAGA	CRISPRCasFinder

2 spacers

DEDDh

The CRISPR arrays of NZ_CP029681_1

>merge|NZ_CP029681|1|427446-427577|PILER-CR,CRISPRCasFinder
CGGGGCCCCAACAAAGAGAATTTCAAAAAAGAAATTCTACAGGCAATACAGGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACATAGAGAA

>NZ_CP029681|1|1|427446-427577|PILER-CR
CGGGGCCCCAACAAAGAGAATTTCAAAA	AAGAAATTCTACAGGCAATACAGGTTGG
CGGGGCCCCAACACAGAAGCTGACGAAA	AGTCAGCTTACGATAATGTGCAGGTTGGCGG
GGCCCCAACATAGAGAA

>NZ_CP029681|1|1|427494-427574|CRISPRCasFinder
CAGGTTGGCGGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACGATAATGTG
CAGGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_001017131.1\|429826_430870_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP029681.1\|WP_025173836.1\|425394_425808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_110179783.1\|422157_422250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000180460.1\|433988_434189_+\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_CP029681.1\|WP_000228666.1\|433377_433842_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP029681.1\|WP_110179784.1\|423123_424437_+\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP029681.1\|WP_000153530.1\|430859_431489_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP029681.1\|WP_001789555.1\|434191_435448_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_CP029681.1\|WP_000149064.1\|429128_429830_+\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_CP029681.1\|WP_001790257.1\|425255_425366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000548781.1\|419473_420004_+\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP029681.1\|WP_000140181.1\|420250_421321_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP029681.1\|WP_000037079.1\|431600_432818_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP029681.1\|WP_000949467.1\|422331_422832_-\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP029681.1\|WP_000613738.1\|421387_421942_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP029681.1\|WP_000544965.1\|424438_425170_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP029681.1\|WP_000999714.1\|426238_427225_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP029681.1\|WP_000428172.1\|433095_433371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001110179.1\|428727_429114_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000636142.1\|427752_428511_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_001017131.1\|429826_430870_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NZ_CP029681.1\|WP_000149064.1\|429128_429830_+\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NZ_CP029681.1\|WP_000613738.1\|421387_421942_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP029681.1\|WP_000180460.1\|433988_434189_+\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NZ_CP029681.1\|WP_000228666.1\|433377_433842_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
NZ_CP029681.1\|WP_110179784.1\|423123_424437_+\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.73279e-99
NZ_CP029681.1\|WP_000153530.1\|430859_431489_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.91794e-79
NZ_CP029681.1\|WP_001789555.1\|434191_435448_+\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_CP029681.1\|WP_000548781.1\|419473_420004_+\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
NZ_CP029681.1\|WP_000140181.1\|420250_421321_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP029681.1\|WP_000037079.1\|431600_432818_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	3.59491e-85
NZ_CP029681.1\|WP_000949467.1\|422331_422832_-\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
NZ_CP029681.1\|WP_000544965.1\|424438_425170_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	2.14444e-120
NZ_CP029681.1\|WP_000999714.1\|426238_427225_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	5.31001e-76
NZ_CP029681.1\|WP_000636142.1\|427752_428511_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126

>NZ_CP029681.1|WP_000999714.1|426238_427225_-|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHLLYEVLMIYRLLDSRYA
>NZ_CP029681.1|WP_025173836.1|425394_425808_+|hypothetical-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLY
>NZ_CP029681.1|WP_001790257.1|425255_425366_+|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_CP029681.1|WP_000544965.1|424438_425170_+|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIIIESDTFGTIVGFENHGGRTFHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>NZ_CP029681.1|WP_110179784.1|423123_424437_+|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKEQKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP029681.1|WP_000949467.1|422331_422832_-|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>NZ_CP029681.1|WP_110179783.1|422157_422250_+|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLGKAK
>NZ_CP029681.1|WP_000613738.1|421387_421942_-|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP029681.1|WP_000140181.1|420250_421321_+|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVYSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP029681.1|WP_000548781.1|419473_420004_+|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>NZ_CP029681.1|WP_000636142.1|427752_428511_+|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NZ_CP029681.1|WP_001110179.1|428727_429114_+|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NZ_CP029681.1|WP_000149064.1|429128_429830_+|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NZ_CP029681.1|WP_001017131.1|429826_430870_+|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NZ_CP029681.1|WP_000153530.1|430859_431489_+|response-regulator-transcription-factor
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_CP029681.1|WP_000037079.1|431600_432818_-|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NZ_CP029681.1|WP_000428172.1|433095_433371_-|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NZ_CP029681.1|WP_000228666.1|433377_433842_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_CP029681.1|WP_000180460.1|433988_434189_+|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NZ_CP029681.1|WP_001789555.1|434191_435448_+|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF

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Crispr_ID: NZ_CP029681_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_2

1275845-1275930

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_2

>merge|NZ_CP029681|2|1275845-1275930|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>NZ_CP029681|2|2|1275845-1275930|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_020978131.1\|1278549_1278783_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_072399251.1\|1269177_1270668_-\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP029681.1\|WP_001239286.1\|1267391_1268339_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP029681.1\|WP_000669537.1\|1280129_1280480_-\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NZ_CP029681.1\|WP_000584398.1\|1281389_1281896_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001802045.1\|1276113_1276338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000857488.1\|1277113_1278073_+\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP029681.1\|WP_001032814.1\|1279404_1279590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000398672.1\|1263938_1264073_-\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP029681.1\|WP_031775077.1\|1282944_1283016_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000793607.1\|1271860_1272862_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP029681.1\|WP_000739541.1\|1273299_1274025_+\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP029681.1\|WP_000335234.1\|1274952_1275669_+\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP029681.1\|WP_000765708.1\|1276294_1276441_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000739572.1\|1282568_1282964_+\|formyl-peptide-receptor	unknown	unknown	gnl\|CDD\|171849
NZ_CP029681.1\|WP_110179751.1\|1270905_1271838_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP029681.1\|WP_001245802.1\|1266954_1267143_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP029681.1\|WP_000791580.1\|1280633_1281131_-\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NZ_CP029681.1\|WP_001063558.1\|1274119_1274845_+\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP029681.1\|WP_000149423.1\|1268643_1268871_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_001063558.1\|1274119_1274845_+\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	2.07034e-148
NZ_CP029681.1\|WP_072399251.1\|1269177_1270668_-\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP029681.1\|WP_001239286.1\|1267391_1268339_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.21166e-84
NZ_CP029681.1\|WP_000857488.1\|1277113_1278073_+\|beta-channel-forming-cytolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.66722e-141
NZ_CP029681.1\|WP_000739572.1\|1282568_1282964_+\|formyl-peptide-receptor	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	1.17946e-62
NZ_CP029681.1\|WP_000398672.1\|1263938_1264073_-\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
NZ_CP029681.1\|WP_000739541.1\|1273299_1274025_+\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.59495e-161
NZ_CP029681.1\|WP_000335234.1\|1274952_1275669_+\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	5.01863e-153
NZ_CP029681.1\|WP_110179751.1\|1270905_1271838_-\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NZ_CP029681.1\|WP_001245802.1\|1266954_1267143_-\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NZ_CP029681.1\|WP_000791580.1\|1280633_1281131_-\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.38388e-27
NZ_CP029681.1\|WP_000669537.1\|1280129_1280480_-\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NZ_CP029681.1\|WP_000793607.1\|1271860_1272862_-\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0

>NZ_CP029681.1|WP_000335234.1|1274952_1275669_+|superantigen-like-protein-SSL12
MCKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP029681.1|WP_001063558.1|1274119_1274845_+|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDHETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP029681.1|WP_000739541.1|1273299_1274025_+|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHLSLSNKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN
>NZ_CP029681.1|WP_000793607.1|1271860_1272862_-|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP029681.1|WP_110179751.1|1270905_1271838_-|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTFVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP029681.1|WP_072399251.1|1269177_1270668_-|YfcC-family-protein
MILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKKDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGLLITQVLIYS
>NZ_CP029681.1|WP_000149423.1|1268643_1268871_-|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NZ_CP029681.1|WP_001239286.1|1267391_1268339_+|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ
>NZ_CP029681.1|WP_001245802.1|1266954_1267143_-|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NZ_CP029681.1|WP_000398672.1|1263938_1264073_-|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
>NZ_CP029681.1|WP_001802045.1|1276113_1276338_-|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP029681.1|WP_000765708.1|1276294_1276441_-|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP029681.1|WP_000857488.1|1277113_1278073_+|beta-channel-forming-cytolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>NZ_CP029681.1|WP_020978131.1|1278549_1278783_+|hypothetical-protein
MVFNDWEINVVYSGEHEVVANEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIKNPNVDEH
>NZ_CP029681.1|WP_001032814.1|1279404_1279590_+|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP029681.1|WP_000669537.1|1280129_1280480_-|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NZ_CP029681.1|WP_000791580.1|1280633_1281131_-|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NZ_CP029681.1|WP_000584398.1|1281389_1281896_-|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP029681.1|WP_000739572.1|1282568_1282964_+|formyl-peptide-receptor
MKKNITKVIIASTVIATGLLTHSNDAKAFFSYEWKGLEIAKKLADDEKKDEERADRLIKDAEKERTYTGKTVEDLYVIAKKLGKGNTIAVVRIIDGGKNGYYTFDITRPLEEHRKNIKVVAKGEIDSITWY
>NZ_CP029681.1|WP_031775077.1|1282944_1283016_+|hypothetical-protein
MRLLGIKKHTELNSCTPNVRKQC

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Crispr_ID: NZ_CP029681_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_3

1298676-1298767

Orphan

Consensus_repeat	Method
CCTCTTTGATTTTTAATCATTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_3

>merge|NZ_CP029681|3|1298676-1298767|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTGATGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGATTTTTAATCATTATG

>NZ_CP029681|3|3|1298676-1298767|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGA	GGCTTTTATGCAGTGATGCGAAGCATCATCTGTATTCCGCTGTT
CCTCTTTGATTTTTAATCATTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000046704.1\|1297109_1297376_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|172616
NZ_CP029681.1\|WP_000234068.1\|1296587_1297109_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP029681.1\|WP_000390524.1\|1289852_1291634_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP029681.1\|WP_000003566.1\|1301520_1302579_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP029681.1\|WP_001246696.1\|1307073_1308150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001018928.1\|1291957_1292272_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP029681.1\|WP_001249293.1\|1292444_1294793_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP029681.1\|WP_000139712.1\|1286281_1287097_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181515
NZ_CP029681.1\|WP_000161940.1\|1294802_1296515_-\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
NZ_CP029681.1\|WP_001788617.1\|1303938_1304046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001242420.1\|1304424_1305159_-\|class-B-sortase	unknown	unknown	gnl\|CDD\|226898
NZ_CP029681.1\|WP_000818276.1\|1287096_1288863_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
NZ_CP029681.1\|WP_001788625.1\|1291799_1291895_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000789821.1\|1308149_1308833_-\|heme-uptake-protein-IsdC	unknown	unknown	gnl\|CDD\|274705
NZ_CP029681.1\|WP_000670950.1\|1304082_1304406_-\|staphylobilin-forming-heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|139480
NZ_CP029681.1\|WP_001792655.1\|1305220_1306189_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP029681.1\|WP_000908978.1\|1299118_1301521_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP029681.1\|WP_001220199.1\|1306198_1307077_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	unknown	unknown	gnl\|CDD\|274706
NZ_CP029681.1\|WP_000435372.1\|1302958_1303699_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP029681.1\|WP_000079317.1\|1288914_1289529_-\|succinate-dehydrogenase-cytochrome-B558	unknown	unknown	gnl\|CDD\|239577

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000046704.1\|1297109_1297376_-\|cell-division-protein-ZapA	gnl\|CDD\|172616	PRK14126, PRK14126, cell division protein ZapA; Provisional.	1.04877e-21
NZ_CP029681.1\|WP_000234068.1\|1296587_1297109_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	4.13485e-29
NZ_CP029681.1\|WP_000390524.1\|1289852_1291634_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP029681.1\|WP_000003566.1\|1301520_1302579_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP029681.1\|WP_001018928.1\|1291957_1292272_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.26685e-48
NZ_CP029681.1\|WP_001249293.1\|1292444_1294793_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP029681.1\|WP_000139712.1\|1286281_1287097_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0
NZ_CP029681.1\|WP_000161940.1\|1294802_1296515_-\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
NZ_CP029681.1\|WP_001792655.1\|1305220_1306189_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.25627e-60
NZ_CP029681.1\|WP_001242420.1\|1304424_1305159_-\|class-B-sortase	gnl\|CDD\|226898	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown].	2.78558e-128
NZ_CP029681.1\|WP_000818276.1\|1287096_1288863_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP029681.1\|WP_000789821.1\|1308149_1308833_-\|heme-uptake-protein-IsdC	gnl\|CDD\|274705	TIGR03656, IsdC, heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain, which confers the ability to bind heme, and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.	2.0626e-97
NZ_CP029681.1\|WP_000670950.1\|1304082_1304406_-\|staphylobilin-forming-heme-oxygenase-IsdG	gnl\|CDD\|139480	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG.	3.35893e-67
NZ_CP029681.1\|WP_000908978.1\|1299118_1301521_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP029681.1\|WP_001220199.1\|1306198_1307077_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	gnl\|CDD\|274706	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.	9.77537e-156
NZ_CP029681.1\|WP_000435372.1\|1302958_1303699_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.00285e-77
NZ_CP029681.1\|WP_000079317.1\|1288914_1289529_-\|succinate-dehydrogenase-cytochrome-B558	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.37018e-87

>NZ_CP029681.1|WP_000046704.1|1297109_1297376_-|cell-division-protein-ZapA
MAQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGYKAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ
>NZ_CP029681.1|WP_000234068.1|1296587_1297109_-|CvpA-family-protein
MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFYKSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTFDKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLIFHIPYLSAFTINL
>NZ_CP029681.1|WP_000161940.1|1294802_1296515_-|DNA-polymerase/3'-5'-exonuclease-PolX
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNIKLKK
>NZ_CP029681.1|WP_001249293.1|1292444_1294793_-|endonuclease-MutS2
MRQKTLDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEERTVYLPKAYHPLLNRETVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSKQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK
>NZ_CP029681.1|WP_001018928.1|1291957_1292272_-|thioredoxin
MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
>NZ_CP029681.1|WP_001788625.1|1291799_1291895_+|hypothetical-protein
MLDYHLTFIDLLIPPFSSRKQYDDLSFNFLY
>NZ_CP029681.1|WP_000390524.1|1289852_1291634_-|excinuclease-ABC-subunit-UvrC
MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLPDLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNIGIPENVAKNLHEQLHK
>NZ_CP029681.1|WP_000079317.1|1288914_1289529_-|succinate-dehydrogenase-cytochrome-B558
MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM
>NZ_CP029681.1|WP_000818276.1|1287096_1288863_-|succinate-dehydrogenase-flavoprotein-subunit
MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAFEVDGLVTKYEGWEFLGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDDVDVSLIPPRKRDYTSKSKGGKK
>NZ_CP029681.1|WP_000139712.1|1286281_1287097_-|succinate-dehydrogenase-iron-sulfur-subunit
MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
>NZ_CP029681.1|WP_000908978.1|1299118_1301521_-|phenylalanine--tRNA-ligase-subunit-beta
MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSEAQVPGTDALQALYLDDQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPDTTSNELELSANNELTVTIENEDKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDAIGSQQIVVRQANEGEKMTTLDGTERELLTSDIVITNGQTPIALAGVMGGDFSEVKEQTSNIVIEGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYANGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDVITVQVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFEKVTSGQLTDRQYKTRMVKEVLEGAGLDQAITYSLVSKEDATAFSMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAASYNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQGKKETVDFYLAKGIVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPTLAADNDLKRTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGNILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEHGAVIR
>NZ_CP029681.1|WP_000003566.1|1301520_1302579_-|phenylalanine--tRNA-ligase-subunit-alpha
MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGLMKLMKDLPNEEKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGRHIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDSFYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGDM
>NZ_CP029681.1|WP_000435372.1|1302958_1303699_-|RNA-methyltransferase
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMIQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG
>NZ_CP029681.1|WP_001788617.1|1303938_1304046_-|hypothetical-protein
MVLLAFVTTIHDTDDGRFFNEHKHANNKLLKHSLI
>NZ_CP029681.1|WP_000670950.1|1304082_1304406_-|staphylobilin-forming-heme-oxygenase-IsdG
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIGYSYMK
>NZ_CP029681.1|WP_001242420.1|1304424_1305159_-|class-B-sortase
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
>NZ_CP029681.1|WP_001792655.1|1305220_1306189_-|iron-ABC-transporter-permease
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLICLICQSQRNRI
>NZ_CP029681.1|WP_001220199.1|1306198_1307077_-|heme-ABC-transporter-substrate-binding-protein-IsdE
MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKAMTQLYDLFYKDKK
>NZ_CP029681.1|WP_001246696.1|1307073_1308150_-|hypothetical-protein
MRNVKQIATKSIIAIISLGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQKLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTIKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYILFAAGIVLATILLISAHLYSRKRGNQV
>NZ_CP029681.1|WP_000789821.1|1308149_1308833_-|heme-uptake-protein-IsdC
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE

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Crispr_ID: NZ_CP029681_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_4

1496043-1496121

Orphan

Consensus_repeat	Method
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_4

>merge|NZ_CP029681|4|1496043-1496121|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>NZ_CP029681|4|4|1496043-1496121|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000781162.1\|1502034_1502418_+\|kinase	unknown	unknown	gnl\|CDD\|378054
NZ_CP029681.1\|WP_110179755.1\|1505708_1507205_+\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP029681.1\|WP_001081626.1\|1504946_1505375_+\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP029681.1\|WP_000054608.1\|1502548_1504954_+\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP029681.1\|WP_011443624.1\|1505386_1505716_+\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP029681.1\|WP_000066053.1\|1493244_1494624_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP029681.1\|WP_000185319.1\|1494865_1495795_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP029681.1\|WP_001067294.1\|1500585_1500963_-\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_CP029681.1\|WP_000007967.1\|1489468_1490044_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP029681.1\|WP_000711893.1\|1488348_1488924_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP029681.1\|WP_000167314.1\|1497598_1498789_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP029681.1\|WP_000838035.1\|1499096_1500224_-\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP029681.1\|WP_000154922.1\|1481058_1484712_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP029681.1\|WP_000758204.1\|1488939_1489464_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP029681.1\|WP_000172378.1\|1484712_1488189_-\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP029681.1\|WP_000148852.1\|1490368_1491700_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP029681.1\|WP_000138487.1\|1496245_1497490_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP029681.1\|WP_000035058.1\|1501377_1501971_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_CP029681.1\|WP_000660040.1\|1492049_1493255_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP029681.1\|WP_000670755.1\|1479990_1480893_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000781162.1\|1502034_1502418_+\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
NZ_CP029681.1\|WP_110179755.1\|1505708_1507205_+\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP029681.1\|WP_001081626.1\|1504946_1505375_+\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP029681.1\|WP_000054608.1\|1502548_1504954_+\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP029681.1\|WP_011443624.1\|1505386_1505716_+\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61
NZ_CP029681.1\|WP_000066053.1\|1493244_1494624_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP029681.1\|WP_000185319.1\|1494865_1495795_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.11302e-151
NZ_CP029681.1\|WP_001067294.1\|1500585_1500963_-\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_CP029681.1\|WP_000007967.1\|1489468_1490044_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
NZ_CP029681.1\|WP_000711893.1\|1488348_1488924_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	3.65162e-54
NZ_CP029681.1\|WP_000167314.1\|1497598_1498789_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP029681.1\|WP_000838035.1\|1499096_1500224_-\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP029681.1\|WP_000154922.1\|1481058_1484712_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029681.1\|WP_000758204.1\|1488939_1489464_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	9.64837e-49
NZ_CP029681.1\|WP_000172378.1\|1484712_1488189_-\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029681.1\|WP_000148852.1\|1490368_1491700_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP029681.1\|WP_000138487.1\|1496245_1497490_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP029681.1\|WP_000035058.1\|1501377_1501971_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
NZ_CP029681.1\|WP_000660040.1\|1492049_1493255_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP029681.1\|WP_000670755.1\|1479990_1480893_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.74159e-87

>NZ_CP029681.1|WP_000185319.1|1494865_1495795_+|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP029681.1|WP_000066053.1|1493244_1494624_+|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP029681.1|WP_000660040.1|1492049_1493255_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDAADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_CP029681.1|WP_000148852.1|1490368_1491700_-|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEDNIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP029681.1|WP_000007967.1|1489468_1490044_-|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>NZ_CP029681.1|WP_000758204.1|1488939_1489464_-|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPSLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_CP029681.1|WP_000711893.1|1488348_1488924_-|signal-peptidase-I
MKKELLEWIISIAIALVIFAIIGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>NZ_CP029681.1|WP_000172378.1|1484712_1488189_-|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTETKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKIEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFKQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDETMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_CP029681.1|WP_000154922.1|1481058_1484712_-|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQAHNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_CP029681.1|WP_000670755.1|1479990_1480893_-|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVERLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>NZ_CP029681.1|WP_000138487.1|1496245_1497490_-|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP029681.1|WP_000167314.1|1497598_1498789_-|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP029681.1|WP_000838035.1|1499096_1500224_-|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPGGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWVNQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP029681.1|WP_001067294.1|1500585_1500963_-|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP029681.1|WP_000035058.1|1501377_1501971_-|peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP029681.1|WP_000781162.1|1502034_1502418_+|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP029681.1|WP_000054608.1|1502548_1504954_+|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFISTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP029681.1|WP_001081626.1|1504946_1505375_+|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP029681.1|WP_011443624.1|1505386_1505716_+|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_CP029681.1|WP_110179755.1|1505708_1507205_+|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYLLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

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Crispr_ID: NZ_CP029681_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_5

1592543-1592620

Unclear

Consensus_repeat	Method
TGGCGGGGCCCCAACATAAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_5

>merge|NZ_CP029681|5|1592543-1592620|CRISPRCasFinder
TGGCGGGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAA

>NZ_CP029681|5|5|1592543-1592620|CRISPRCasFinder
TGGCGGGGCCCCAACATAAAGAA	TTTCGAAAAGAAATTCTACAAACAATGCAAGT
TGGCGGGGCCCCAACATAAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000229238.1\|1595762_1597748_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP029681.1\|WP_000513313.1\|1590525_1591365_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP029681.1\|WP_000134961.1\|1587583_1588519_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP029681.1\|WP_000369722.1\|1585673_1586585_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP029681.1\|WP_001049165.1\|1582475_1583063_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP029681.1\|WP_000057543.1\|1588585_1590025_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
NZ_CP029681.1\|WP_000753321.1\|1599073_1599913_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP029681.1\|WP_000816300.1\|1581330_1582233_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP029681.1\|WP_000662681.1\|1592908_1595755_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP029681.1\|WP_000958224.1\|1591370_1592303_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP029681.1\|WP_000006551.1\|1583626_1584571_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP029681.1\|WP_001248939.1\|1584681_1585677_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP029681.1\|WP_010956549.1\|1600321_1601432_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP029681.1\|WP_000617735.1\|1604691_1605264_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP029681.1\|WP_000506531.1\|1601746_1604278_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP029681.1\|WP_072360986.1\|1600060_1600168_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001790092.1\|1601600_1601705_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000638419.1\|1598016_1598253_-\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP029681.1\|WP_001224795.1\|1590032_1590518_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP029681.1\|WP_000538141.1\|1598249_1598900_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000229238.1\|1595762_1597748_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP029681.1\|WP_000513313.1\|1590525_1591365_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.81145e-120
NZ_CP029681.1\|WP_000134961.1\|1587583_1588519_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	5.91243e-154
NZ_CP029681.1\|WP_000369722.1\|1585673_1586585_-\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
NZ_CP029681.1\|WP_001049165.1\|1582475_1583063_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP029681.1\|WP_000057543.1\|1588585_1590025_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
NZ_CP029681.1\|WP_000753321.1\|1599073_1599913_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.82721e-42
NZ_CP029681.1\|WP_000816300.1\|1581330_1582233_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.43426e-153
NZ_CP029681.1\|WP_000662681.1\|1592908_1595755_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP029681.1\|WP_000958224.1\|1591370_1592303_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP029681.1\|WP_000006551.1\|1583626_1584571_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NZ_CP029681.1\|WP_001248939.1\|1584681_1585677_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NZ_CP029681.1\|WP_010956549.1\|1600321_1601432_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP029681.1\|WP_000506531.1\|1601746_1604278_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP029681.1\|WP_000617735.1\|1604691_1605264_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
NZ_CP029681.1\|WP_000638419.1\|1598016_1598253_-\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP029681.1\|WP_001224795.1\|1590032_1590518_-\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	5.56005e-29
NZ_CP029681.1\|WP_000538141.1\|1598249_1598900_-\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58

>NZ_CP029681.1|WP_000958224.1|1591370_1592303_-|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP029681.1|WP_000513313.1|1590525_1591365_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>NZ_CP029681.1|WP_001224795.1|1590032_1590518_-|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLVGANSIILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP029681.1|WP_000057543.1|1588585_1590025_-|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP029681.1|WP_000134961.1|1587583_1588519_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLKDQA
>NZ_CP029681.1|WP_000369722.1|1585673_1586585_-|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP029681.1|WP_001248939.1|1584681_1585677_-|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP029681.1|WP_000006551.1|1583626_1584571_-|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP029681.1|WP_001049165.1|1582475_1583063_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP029681.1|WP_000816300.1|1581330_1582233_+|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>NZ_CP029681.1|WP_000662681.1|1592908_1595755_-|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_CP029681.1|WP_000229238.1|1595762_1597748_-|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYRTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP029681.1|WP_000638419.1|1598016_1598253_-|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP029681.1|WP_000538141.1|1598249_1598900_-|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_CP029681.1|WP_000753321.1|1599073_1599913_-|CHAP-domain-containing-protein
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP029681.1|WP_072360986.1|1600060_1600168_-|hypothetical-protein
MYLLKQHMQCAFSNITYGDFQGIELIVENVLNYMV
>NZ_CP029681.1|WP_010956549.1|1600321_1601432_-|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NZ_CP029681.1|WP_001790092.1|1601600_1601705_-|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>NZ_CP029681.1|WP_000506531.1|1601746_1604278_-|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NZ_CP029681.1|WP_000617735.1|1604691_1605264_-|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ

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Crispr_ID: NZ_CP029681_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_6

2009840-2009942

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_6

>merge|NZ_CP029681|6|2009840-2009942|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>NZ_CP029681|6|6|2009840-2009942|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000264071.1\|2003673_2005140_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP029681.1\|WP_001289311.1\|2012268_2013024_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP029681.1\|WP_001792089.1\|2010617_2010716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_064626855.1\|2017079_2017358_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000868264.1\|2018312_2018696_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000394698.1\|2008086_2008749_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000592973.1\|2000877_2002014_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP029681.1\|WP_000158377.1\|2018761_2019343_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP029681.1\|WP_000052781.1\|2013515_2014085_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP029681.1\|WP_000793020.1\|2005177_2006446_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP029681.1\|WP_020978012.1\|2008866_2009823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP029681.1\|WP_000466891.1\|1999817_2000015_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP029681.1\|WP_000746679.1\|2017430_2018057_+\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NZ_CP029681.1\|WP_000930514.1\|2014100_2015624_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_CP029681.1\|WP_000431539.1\|2000158_2000782_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP029681.1\|WP_000421410.1\|2006445_2007024_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP029681.1\|WP_000211678.1\|2019520_2019730_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000991021.1\|2010800_2012189_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP029681.1\|WP_000763767.1\|2007536_2007944_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP029681.1\|WP_000424963.1\|2002107_2003649_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000264071.1\|2003673_2005140_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP029681.1\|WP_001289311.1\|2012268_2013024_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
NZ_CP029681.1\|WP_000592973.1\|2000877_2002014_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.94703e-50
NZ_CP029681.1\|WP_000158377.1\|2018761_2019343_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.30018e-49
NZ_CP029681.1\|WP_000052781.1\|2013515_2014085_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
NZ_CP029681.1\|WP_000793020.1\|2005177_2006446_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.28569e-170
NZ_CP029681.1\|WP_020978012.1\|2008866_2009823_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00304381
NZ_CP029681.1\|WP_000466891.1\|1999817_2000015_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	0.000309287
NZ_CP029681.1\|WP_000746679.1\|2017430_2018057_+\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
NZ_CP029681.1\|WP_000431539.1\|2000158_2000782_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.00285e-14
NZ_CP029681.1\|WP_000991021.1\|2010800_2012189_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP029681.1\|WP_000421410.1\|2006445_2007024_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
NZ_CP029681.1\|WP_000930514.1\|2014100_2015624_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_CP029681.1\|WP_000763767.1\|2007536_2007944_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
NZ_CP029681.1\|WP_000424963.1\|2002107_2003649_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>NZ_CP029681.1|WP_020978012.1|2008866_2009823_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLFGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVTTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>NZ_CP029681.1|WP_000394698.1|2008086_2008749_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>NZ_CP029681.1|WP_000763767.1|2007536_2007944_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>NZ_CP029681.1|WP_000421410.1|2006445_2007024_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>NZ_CP029681.1|WP_000793020.1|2005177_2006446_-|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLIICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>NZ_CP029681.1|WP_000264071.1|2003673_2005140_-|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>NZ_CP029681.1|WP_000424963.1|2002107_2003649_-|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>NZ_CP029681.1|WP_000592973.1|2000877_2002014_+|site-specific-integrase
MIKKYKKKDGTTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEISRNGFLNNDITTFKEVYELWLEQYQNTVRESTYQRVLTLFDTAILEHFKDVPIKKITVPYCQKVINKWNEKYSDIKAIRIYTSNVFKYAVNLKIIADNPFTHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGANYKMVIQEPKTKSSHRTISIDDKTANVLKSWRTHQRVESLKYGHNTSDKYQYVFTTVRDNKQLYPEHCNKALNLICEKHNFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQRDQVADKFAKYINF
>NZ_CP029681.1|WP_000431539.1|2000158_2000782_+|helix-turn-helix-transcriptional-regulator
MENRIAELRKENNMTLKQLAKELNIRDNTLSQYETGKRNPQMGLLQEIANFFGVSMEYILKATNKRDYPIADSKSAIELLERMENEKGFNYLHISKNTALNLSLWIINNMDYIKEKHPNLLYTASFLVKNTVSENKILQHYSETRIKELQIVDEIDDILLEREFYGASAEQVLEFIHQSERIGHQQTEALMNYIRDLPTEEYDDEDI
>NZ_CP029681.1|WP_000466891.1|1999817_2000015_-|helix-turn-helix-transcriptional-regulator
MFGIDENLSSKLREIRARKNITLQQASKEIGISSKTLSLIENEMLVKVKRTTYEKVTKWIINEVK
>NZ_CP029681.1|WP_001792089.1|2010617_2010716_-|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNLVEKGEKG
>NZ_CP029681.1|WP_000991021.1|2010800_2012189_+|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKSAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLVILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>NZ_CP029681.1|WP_001289311.1|2012268_2013024_-|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>NZ_CP029681.1|WP_000052781.1|2013515_2014085_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>NZ_CP029681.1|WP_000930514.1|2014100_2015624_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>NZ_CP029681.1|WP_064626855.1|2017079_2017358_+|hypothetical-protein
MKSDQAIKEFTSYLRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLIQPIMQLFIDNAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>NZ_CP029681.1|WP_000746679.1|2017430_2018057_+|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>NZ_CP029681.1|WP_000868264.1|2018312_2018696_+|hypothetical-protein
MKVRITFIILSILSTIVCLFLAAMHPTGPSTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVDKNDSH
>NZ_CP029681.1|WP_000158377.1|2018761_2019343_-|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQQDDIVIVAHQVVIRCLMVYFNNVSREEAVDLKVENCKPYIIE
>NZ_CP029681.1|WP_000211678.1|2019520_2019730_+|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPTSPHVNLLLFNPILPTFLNIIIHIDHFHANKKDDN

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Crispr_ID: NZ_CP029681_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_7

2150280-2150370

Orphan

Consensus_repeat	Method
TTCTACAGACAATGCAAGTTGGGGTGTGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_7

>merge|NZ_CP029681|7|2150280-2150370|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGTGGGCCC

>NZ_CP029681|7|7|2150280-2150370|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGTGGGCCC	CAACAAAGAGAATTTCGAAAAGAAA
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000167984.1\|2150908_2152603_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP029681.1\|WP_000975365.1\|2143214_2144936_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|376098
NZ_CP029681.1\|WP_000646203.1\|2156101_2157157_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176219
NZ_CP029681.1\|WP_000240920.1\|2144968_2146657_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP029681.1\|WP_000610207.1\|2146678_2147704_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_CP029681.1\|WP_000645456.1\|2139655_2140396_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_CP029681.1\|WP_000607067.1\|2138405_2139107_-\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_CP029681.1\|WP_001012739.1\|2159413_2161510_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP029681.1\|WP_000925394.1\|2140398_2142138_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP029681.1\|WP_000608831.1\|2142396_2143071_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940
NZ_CP029681.1\|WP_000815795.1\|2158660_2158939_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP029681.1\|WP_000645601.1\|2154886_2155930_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP029681.1\|WP_000872486.1\|2147696_2148413_-\|D-ribitol-5-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_CP029681.1\|WP_000230358.1\|2155953_2156100_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000610188.1\|2152624_2153650_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_CP029681.1\|WP_000531476.1\|2158961_2159429_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP029681.1\|WP_000598262.1\|2148688_2149858_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP029681.1\|WP_000638475.1\|2153642_2154359_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_CP029681.1\|WP_020977989.1\|2157174_2158434_-\|PTS-galactitol-IIC-component	unknown	unknown	gnl\|CDD\|226298
NZ_CP029681.1\|WP_001792906.1\|2139099_2139543_-\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000167984.1\|2150908_2152603_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.00668e-114
NZ_CP029681.1\|WP_000975365.1\|2143214_2144936_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	6.64158e-35
NZ_CP029681.1\|WP_000646203.1\|2156101_2157157_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176219	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.06411e-146
NZ_CP029681.1\|WP_000240920.1\|2144968_2146657_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
NZ_CP029681.1\|WP_000610207.1\|2146678_2147704_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_CP029681.1\|WP_000645456.1\|2139655_2140396_-\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	4.37999e-152
NZ_CP029681.1\|WP_000607067.1\|2138405_2139107_-\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NZ_CP029681.1\|WP_001012739.1\|2159413_2161510_-\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.95484e-84
NZ_CP029681.1\|WP_000925394.1\|2140398_2142138_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP029681.1\|WP_000608831.1\|2142396_2143071_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	7.18502e-154
NZ_CP029681.1\|WP_000815795.1\|2158660_2158939_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.43648e-34
NZ_CP029681.1\|WP_000645601.1\|2154886_2155930_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	9.45294e-176
NZ_CP029681.1\|WP_000872486.1\|2147696_2148413_-\|D-ribitol-5-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	2.28851e-105
NZ_CP029681.1\|WP_000610188.1\|2152624_2153650_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	8.17637e-179
NZ_CP029681.1\|WP_000531476.1\|2158961_2159429_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.27465e-37
NZ_CP029681.1\|WP_000598262.1\|2148688_2149858_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.25735e-161
NZ_CP029681.1\|WP_000638475.1\|2153642_2154359_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	3.70751e-127
NZ_CP029681.1\|WP_020977989.1\|2157174_2158434_-\|PTS-galactitol-IIC-component	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
NZ_CP029681.1\|WP_001792906.1\|2139099_2139543_-\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64

>NZ_CP029681.1|WP_000598262.1|2148688_2149858_-|CDP-glycerol-glycerophosphotransferase-family-protein
MIKTTIKKLIEHSIYTTFKLLSKLPNKNLIYFESFHGKQYSDNPKALYEYLTEHSDAQLIWGVKKGYEHIFQQHNVPYVTKFSMKWFLAMPRAKAWMINTRTPDWLYKSPRTTYLQTWHGTPLKKIGLDISNVKMLGTNTQNYQDGFKKESQRWDYLVSPNPYSTSIFQHAFHVSRDKILETGYPRNDKLSHKRNDTEYINGIKTRLNIPLDKKVIMYAPTWRDDEAIREGSYQFNVNFDIEALRQALDDDYVILLRMHYLVVTRIDEHDDFVKDVSDYEDISDLYLISDALVTDYSSVMFDFGVLKRPQIFYAYDLDKYGDELRGFYMDYKKELPGPIVENQTALIDALKQIDETTNEYIEARTVFYQKFCSLEDGHASQRICQTIFK
>NZ_CP029681.1|WP_000872486.1|2147696_2148413_-|D-ribitol-5-phosphate-cytidylyltransferase
MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
>NZ_CP029681.1|WP_000610207.1|2146678_2147704_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFEVTYNNVDIYSDYVIVRPLYMSICAADQRYYTGSRDENVLSQKLPMSLIHEGVGEVVFDSKGVFNKGTKVVMVPNTPTETDDVIAENYLKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKSISNKNTFGIWGDGNLGYITAILLRKLYPESKIYVFGKTDYKLSHFSFVDDVFFINKIPEGLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTRLVLEKGLTLIGSSRSGSKDFQDVVDLYIQYPDIVDKLALLKGQEFEIATINDLTEAFEADLSTSWGKTVLKWIM
>NZ_CP029681.1|WP_000240920.1|2144968_2146657_-|CDP-glycerol-glycerophosphotransferase-family-protein
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>NZ_CP029681.1|WP_000975365.1|2143214_2144936_-|glycosyltransferase-family-2-protein
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTTLLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISLKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>NZ_CP029681.1|WP_000608831.1|2142396_2143071_-|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NZ_CP029681.1|WP_000925394.1|2140398_2142138_-|sensor-histidine-kinase
MLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NZ_CP029681.1|WP_000645456.1|2139655_2140396_-|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPAYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NZ_CP029681.1|WP_001792906.1|2139099_2139543_-|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NZ_CP029681.1|WP_000607067.1|2138405_2139107_-|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>NZ_CP029681.1|WP_000167984.1|2150908_2152603_-|CDP-glycerol-glycerophosphotransferase-family-protein
MTKTKQAIHIDNIYWERVQLYIEGHSEGVDLTSGQFVLRNLTETKTLEANEMKIDGNTFICRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKVNYLLAYDAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIKTVFKANITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDETYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR
>NZ_CP029681.1|WP_000610188.1|2152624_2153650_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFDVTYNNVDIYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKGVFEKGTKVVMVPNTPTEQHHIIAENYLASSYFRSSGYDGFMQDYVVMAHDRIVPLPNDIDLSTISYTELVSVSYHAIQRFERKSIPLKTSFGIWGDGNLGYITAILLRKLYPEAKTYVFGKTDYKLSHFSFVDDIFTVNQIPDDLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNTRLVLEKGLTLIGSSRSGSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEKDLSTSWGKTVLKWTI
>NZ_CP029681.1|WP_000638475.1|2153642_2154359_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
>NZ_CP029681.1|WP_000645601.1|2154886_2155930_-|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGVEDLRYEDNEKPVIESANDVIIKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIACYQCGYCLKGEYARCEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY
>NZ_CP029681.1|WP_000230358.1|2155953_2156100_-|hypothetical-protein
MVESMLTFMLGPLRQITDFYMEHLLVSNSIVIAGYFATGIFKKKKVVN
>NZ_CP029681.1|WP_000646203.1|2156101_2157157_-|zinc-binding-dehydrogenase
MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYEGHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCKSKDYNLCNHRKGIGTQVDGAFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDILRKKGFYSQIGIFKDAEIPFDMEKVIQKEITVVGSRSQKPADWEPSLQLMADGLVNAEALVTKIYDISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN
>NZ_CP029681.1|WP_020977989.1|2157174_2158434_-|PTS-galactitol-IIC-component
MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLVKNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQVICLKVADWTAPMMSEFFDLPGVSIATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAVALGHPAVISTALILVPITVLLAVILPGNQVLPFDDLATIPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
>NZ_CP029681.1|WP_000815795.1|2158660_2158939_-|PTS-sugar-transporter-subunit-IIB
MKQVLVACGAGIATSTVVNNAIEEMAKEHNIKVDIKQIKITEVGPYEDTADLLVTTAMTKKEYKFPVINARNFLTGIGIEETKQQILTELQK
>NZ_CP029681.1|WP_000531476.1|2158961_2159429_-|PTS-sugar-transporter-subunit-IIA
MGQQLVHKENIMLNLSATDKESVLSQMSDVLFQNGFVKSTFKDAVIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVKIVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN
>NZ_CP029681.1|WP_001012739.1|2159413_2161510_-|transcription-antiterminator
MNGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQLEDHGLSLKYSRKHGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEVLKALNLTFEDIAYQKDKIKQVEQFLKSRFIDKSLSSLPYVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQATEIMTQHEPDLPEAEKLYLTLHLLSTSVQWTDLQESDSISNLTMAIAQMIHHFEQITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSLTEYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPEIIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKLFITKVALSENEQRKLRKEVMKYINKESADIDKEINKLMALIERTTTVNDITELRDGLEDFIANYNSISTINGSIVTQNKTLDLADLIPARHVKRIHHVENIDEAIAKASDVLVANHFIDIKYIHEMQQVFDDSYMVIMQNIAIPHAYSEKHVHKTAMSMLILQEPIYMSDGTAIHIIVPIAAVDKVTHLRALLQLRDVAQDNDAIKRIIQSRKNSDVNEILKNYSNKEARENGWDSN

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Crispr_ID: NZ_CP029681_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_8

2351269-2351520

TypeIII

Consensus_repeat	Method
AGTTCTCGTCCCCTCTTCTACGGGNGTAGTTATCGAAT	CRT
CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	CRISPRCasFinder
GAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	PILER-CR

3 spacers

cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

The CRISPR arrays of NZ_CP029681_8

>merge|NZ_CP029681|8|2351269-2351520|CRT,CRISPRCasFinder,PILER-CR
GATCCTCGTCCCCTCTTCTACGGGGTAGTTATCGAATGCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAATAGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCCTCTTCTACGGGGGTAGTTATCGAATGAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT

>NZ_CP029681|8|1|2351269-2351520|CRT
GATCCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	GCATAAAGTTTTGATATACACGATCGAATATG
AGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATC
AGTTCTCGTCCCCTCTTCTACGGGGGTAGTTATCGAA	TGAAGACCAATTAGAATCATATCGCGTCTTAGAAG
AGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT

>NZ_CP029681|8|8|2351273-2351520|CRISPRCasFinder
CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	GCATAAAGTTTTGATATACACGATCGAATATGAGTT
CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTT
CTCGTCCCCTCTTCTACGGGGGTAGTTATCGAA	TGAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTT
CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT

>NZ_CP029681|8|2|2351337-2351520|PILER-CR
GAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAATA	GTGGTCCAGAATTAATACATGGTAAAGGAGTATATC
AGTTCTCGTCCCCTCTTCTACGGGGGTAGTTATCGAATG	AAGACCAATTAGAATCATATCGCGTCTTAGAAG
AGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_020977952.1\|2342685_2343240_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274100
NZ_CP029681.1\|WP_001181358.1\|2341718_2342450_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NZ_CP029681.1\|WP_000608705.1\|2351654_2352389_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP029681.1\|WP_000153149.1\|2353653_2354676_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP029681.1\|WP_000865879.1\|2352385_2353654_-\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
NZ_CP029681.1\|WP_001822528.1\|2346346_2347279_+\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NZ_CP029681.1\|WP_000208937.1\|2354678_2355587_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP029681.1\|WP_000359017.1\|2356671_2358945_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP029681.1\|WP_000286998.1\|2355597_2356242_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP029681.1\|WP_000179888.1\|2345435_2345732_-\|TfoX/Sxy-family-protein	unknown	unknown	gnl\|CDD\|225612
NZ_CP029681.1\|WP_000251226.1\|2349191_2350127_-\|DUF4297-domain-containing-protein	unknown	unknown	gnl\|CDD\|372918
NZ_CP029681.1\|WP_000908959.1\|2344624_2345227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000281076.1\|2358958_2359264_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NZ_CP029681.1\|WP_000398680.1\|2345780_2345984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000410569.1\|2341080_2341563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000814441.1\|2343418_2344333_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP029681.1\|WP_064138164.1\|2347525_2349199_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NZ_CP029681.1\|WP_000599362.1\|2356243_2356669_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
NZ_CP029681.1\|WP_072093071.1\|2361546_2361858_+\|DUF3387-domain-containing-protein	unknown	unknown	gnl\|CDD\|378743
NZ_CP029681.1\|WP_000655859.1\|2359263_2360169_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_020977952.1\|2342685_2343240_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	1.01012e-12
NZ_CP029681.1\|WP_001181358.1\|2341718_2342450_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	1.69527e-28
NZ_CP029681.1\|WP_000608705.1\|2351654_2352389_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.10684e-15
NZ_CP029681.1\|WP_000153149.1\|2353653_2354676_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.06095e-17
NZ_CP029681.1\|WP_000655859.1\|2359263_2360169_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.00185e-113
NZ_CP029681.1\|WP_001822528.1\|2346346_2347279_+\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	6.56367e-91
NZ_CP029681.1\|WP_000208937.1\|2354678_2355587_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	3.0078e-40
NZ_CP029681.1\|WP_000359017.1\|2356671_2358945_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP029681.1\|WP_000286998.1\|2355597_2356242_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.36094e-106
NZ_CP029681.1\|WP_000179888.1\|2345435_2345732_-\|TfoX/Sxy-family-protein	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	7.78757e-21
NZ_CP029681.1\|WP_000251226.1\|2349191_2350127_-\|DUF4297-domain-containing-protein	gnl\|CDD\|372918	pfam14130, DUF4297, Domain of unknown function (DUF4297). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is typically between 207 and 221 amino acids in length.	0.00217205
NZ_CP029681.1\|WP_000281076.1\|2358958_2359264_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	4.06918e-22
NZ_CP029681.1\|WP_000865879.1\|2352385_2353654_-\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	1.16357e-132
NZ_CP029681.1\|WP_000599362.1\|2356243_2356669_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	7.59929e-21
NZ_CP029681.1\|WP_000814441.1\|2343418_2344333_+\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	2.42079e-31
NZ_CP029681.1\|WP_064138164.1\|2347525_2349199_-\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.2246e-06
NZ_CP029681.1\|WP_072093071.1\|2361546_2361858_+\|DUF3387-domain-containing-protein	gnl\|CDD\|378743	pfam11867, DUF3387, Domain of unknown function (DUF3387). This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.	4.08117e-39

>NZ_CP029681.1|WP_000251226.1|2349191_2350127_-|DUF4297-domain-containing-protein
MVRENGGANAQRGFNYQNCVISLVAIRNYKKPNFKIYVEADEDFEVNYGDDYHACIQVKGEKNLTFNKLLKGENGKLSIFEKNLSSGKSDSVYKIVVFSFSRKDMESMQEQTDEEELFSNSWLLSNDQKNKVNNDRVENFSLVKTAFDNDMKNARIYLKGELVQQNIVVEGRAEVILNELFQQILQKSEKKVQTEQDKELKKITSKELDLILQKITAKARFEKELKNLRFNSLKEEKIKKEEKKIILEYMAVKKAVIRFLKSDEEKLENNSISTLISETFNLSEMNCLSENTKYAIAISAYCDILEEIAYE
>NZ_CP029681.1|WP_064138164.1|2347525_2349199_-|hypothetical-protein
MNKLTIISLSILDNKEKKANKFEFSEKSNLIISERNGEGKSSLIKSIQYCLGSNLKAFPKGWDYKNYVFQLEIVIDKNKILIQRYNNIITVLDDGKIKKFGYLKDYSDWFQDKMEMNLKLVSKNKNTSSLASLEAILSPLYIDQDKSWDGILYKNSFEGLAQYKSQSFPKEVFEYYLGISNNIMNDKINKLNKYREKSKEKKVKIEQVDSVYKNYSSQKNISKTIPKEFEEFKKQVDFYIKETDRFSQMITQKTDKLSKEKMKLDILQQDREELRKLLTKTKKRLSEVSYECTYCHSVLTRGQSLTRMELDDNKIEILLRKDSINQEIIKIENNIQKKLIEIQNLENQFELYHERLSELKQLSNIDNYVNQKVLQELETLKIEEVIELKEIDQEIKSLRNEISKLKKSLKTDLENINQKFKKLKNKISLQMETTGLSEKKVLNFNKLNGSGTFLNKDLLTLYLVYMNLLDSMEDFGLPFAIDSFVKNETDSIALEKMFGAIDKYFLTLNNQTFFSIIKENLKFIENPVNEIKIERPLLKEKFFSDIEKELIQNLNIL
>NZ_CP029681.1|WP_001822528.1|2346346_2347279_+|tRNA-dihydrouridine-synthase
MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL
>NZ_CP029681.1|WP_000398680.1|2345780_2345984_-|hypothetical-protein
MEGLKHSLKSLGWWDLFFAIPMFLLFAYLPNYNFITIFLNIVIIIFFSIGLILTTHIIIDKIKSNTK
>NZ_CP029681.1|WP_000179888.1|2345435_2345732_-|TfoX/Sxy-family-protein
MATEKDINDLFLNHVNSNAVKTRKMMGEYIIYYDGVVIGGLYDNRLLVKATKSAQQKLQDNTLVSPYPGAKEMILIPDFTEATNLTDLFKTIKNDLKN
>NZ_CP029681.1|WP_000908959.1|2344624_2345227_-|hypothetical-protein
MLISLVTPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATTFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCFLPFYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNIMER
>NZ_CP029681.1|WP_000814441.1|2343418_2344333_+|alpha/beta-hydrolase
MKQSVNFKSKTNLLAANLYTPEQFDESKKYPAITVCHPGGGVKEQTAGMYAEKLAEFGYVTVVYDASHQGESEGSPRYLEDPFARTEDVRASVDYLTTLDFVDNDRIGALGVCAGGGYTVSAARTERRIKALATVSMVDIGALFRKGPGDVVSIDDQLAFMTQVADQRTAEANGADYGITGYVPEEIDDSMPENSTMVQGHDYYLTARGQHKNAPNKLLLRSFSEVLTFAPFTYIDELLTQPFLAIAGTEADTIEYSVDAVEKAAGDNNELYKIEGASHVDLYDIPEYVNQVLPKLESFYKETL
>NZ_CP029681.1|WP_020977952.1|2342685_2343240_-|TetR-family-transcriptional-regulator
MNVGDLRVVKTRASIKKAFITLLFEKDFDTISIKEITEFAQIGRKTFYLHYIDKYDLLDQIVSEKLTELEQISEAKKSLGIQEGTQLWFEFFENNRTFFMKIFNINNASNYKKKLLHFIEEEFKKKVPTRVATEKGLDYDLYINFISNGIIGLLDIYLNSSENTEEQEKITLQVSRLLSLYDLI
>NZ_CP029681.1|WP_001181358.1|2341718_2342450_-|methyltransferase-domain-containing-protein
MQNRNDFIEKLLDRAQIKDGMRVLDIGCATGEVTQLIAKRVGANGEVVGVDVNESLLKIANENNQYNNVSYQYSDIYQLPETMGHFDAIVGRRVLMYLPDAEKCLQILKSILKPEGILCFQESDAINTGVGADALPLHQSAIQWIWETVKQEGGNIHIGQNLYNLFNNNGMHVVDYFAEAVIQTSMDNDLAWLVDVMLPRMKAHGVINDDFSLDEFKSNLEQEAINNQCAFIRDMAFGIIGKA
>NZ_CP029681.1|WP_000410569.1|2341080_2341563_-|hypothetical-protein
MEKFNNWILNAISGSQTDKNETTKELKGSKFIILYAYSMLVLLALVVSNIFIHILEPKLSITTQIITVLILIEALIGLRFLKAYDVKRGKDKENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
>NZ_CP029681.1|WP_000608705.1|2351654_2352389_-|CRISPR-associated-endoribonuclease-Cas6
MINKITVELDLPDSIRFQYLGSILHGVLMDYLPNDIADQLHHEFAYSPLKQRIYHKNKKVIWEIVCMSDRLFNEIAELFTSKNRLFLKYYQVYIEIYSFNIEKVNVQNIMNQLLETEELNRYVRINIQTPMSFKYQSNYMIFPEVKRFFRSIMIQFDAFFEEYKMYDKETLDFLEKNINIVDYKLKSTRFNLEKVKIPSFTGEIVFKIKGPLPFLQLTHFLLKFGEFSGSGMKTSLGMGKYSII
>NZ_CP029681.1|WP_000865879.1|2352385_2353654_-|type-III-A-CRISPR-associated-protein-Csm6
MKVLFSPIGNSDPWSNDRDGAMLHIVRHYKPDVVVLFFTESIWNGNRNIPGRKNFDWENIVSKVSSRTKVDIKVDSIKYENDFDSYKDIFHFYINEIRTKYSDAEILLNVTSGTPQMESTLCLEYISNPHNMKCIQVSTPAPIEGPKRSFAKLETVTEDLNKVNANEKMASNRSKSINIISFREVMVRSQIKSLVNNYDYEGALNLVSDQKSFRNGKLLRKRLLELTNQIKTHEVFPEINDKYRSVALKKSLFHYLLLNMRYNRLDVAETLIRVKSIAEFILKTYIVGHWPTLIIEKDDKPYLNAEDNLSFIYKYKLLLEKRRQNLDVSRILGLPAFIDILTVLEPNSKLLKEVNAVNDINGLRNSIAHNLETLDLDKNKNYKKIMLSVEAIKNMLHISFPEIEEKDYNYFERKNKEFRELL
>NZ_CP029681.1|WP_000153149.1|2353653_2354676_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTIKNYEVVIKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNILDTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWKAFVSYSEKVNQGKKYGNIRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTALVSKYNNEKNTDVYSKIKVSDSEPIDERHLAIYQKIDINKSEKPMPLYRECVDVDTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGMPDVLNQNILFLGAGAGFVSKTTHYQLKSREQAKRDSFDILTKKFRRTYGKMKEMPSNVPVALKGTTNQSLHVSYQQGMCKISFQELNNEVL
>NZ_CP029681.1|WP_000208937.1|2354678_2355587_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MTTKVFKLSFKTPVHFGKKRLSDGEMTITSDTLFSALFIEALQLGIETDWLLNDLIISDTFPYENEIYYLPKPLIKIESKEEGNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFSIGHFSLQTKVSLSAQEIDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDQLKDIMTSLQYSGLGGKRNAGYGQFEYEIINNQQLFKLLNQNGEHSILLSTAMAKEDEIKSALKEARYILNKRSGFIQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDVFNVGHNGKHPVYRYAKPLWLEV
>NZ_CP029681.1|WP_000286998.1|2355597_2356242_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAKHFGLKMKQENHNQDDESVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVENDFENIEKAIHLLENDYLGGGGTRGNGRIQFNDITIETVVGEYDSTNLKIK
>NZ_CP029681.1|WP_000599362.1|2356243_2356669_-|type-III-A-CRISPR-associated-protein-Csm2
MILAKTKSGKKIDLTFAHEVVKSNVKTVKDKRGKENQVLFNGLTTSKLRNLMEQVNRLYTIAFNSTEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIQKESKKFFLDYCKYFEALVAYAKYYQKED
>NZ_CP029681.1|WP_000359017.1|2356671_2358945_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDKKTTLMYGSLLHDIGKIIYRSNDHAFARGTHSKLGYNFLSQFSEFKDNEVLDSIAYHHYKELAKANLANDNTAYITYIADNIASGIDRRDVIEEGDEEYEKQAFNFDKYTPLYSVFNIVNSEKLKQISGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSYDLEHKLSIKEDTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFTKYENTKEFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLEIMLEVIVDQLLEKLELTRANLLYTGGGHAYLLVSNTDKGKEKINQFNTELKNWFMSEFTTDLSLSIAFEKCSGNDLMNTSGNYRNIWRNVSSKLSDIKAHKYSSEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFDKFISVIDYEEAERLAQNNNHIRIYSKNKPYIGVGISTNLWMCDYDYASQNKDMREKGIGSYVEREEGIKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEVSVYINEKFKDFTLGKLTMSAGVGMFSGKYPISKMAFETGLLEEAAKTDEKNQIALWVQEKVYNWDEFKKYILEEKLLVLQHGFSQTDEHGKAFIYKMLALLRNNETINIARLAYLLARSKMTEEFTSKIFNWAQNDKDKNQLITALEYYVYQIREVD
>NZ_CP029681.1|WP_000281076.1|2358958_2359264_-|CRISPR-associated-endonuclease-Cas2
MYLLVSFDLPRDTKFERRVASKYRTRLLELGFSMKQFSLYERYVSDVQKKDKILEILQQEIPDTGSITLYVLPDEVNNSQITILGKEVKVVVRKEPKLIFL
>NZ_CP029681.1|WP_000655859.1|2359263_2360169_-|type-II-CRISPR-associated-endonuclease-Cas1
MKDVIYVENHYFVTVKENSIKFRNVIDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIFCDKKHSPLTQLISSYGMTHRLQRIQSQFQLSGRTRDRIWKKIVVNKIINQSKCLENNLHNENVKLLVNLAKDVSSGDKSNKEAQAARIYFKDLYGKQFKRGRYNDIINSGLNYGYSILRSFIKKELALHGFEMSLGINHRSKENPFNLADDIIEVFRPFVDNIVYEIVFKKNINTFDVNEKKLLLNVLYEKCIIDKKVVRLLDSVKIVIQSLIRCYEENTPTYLLLPKMIEVGN
>NZ_CP029681.1|WP_072093071.1|2361546_2361858_+|DUF3387-domain-containing-protein
MLSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLRNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFLRCFSFT

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Crispr_ID: NZ_CP029681_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_9

2360243-2361133

TypeIII

Consensus_repeat	Method
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CRISPRCasFinder
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CRT
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	PILER-CR

12 spacers

cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6

The CRISPR arrays of NZ_CP029681_9

>merge|NZ_CP029681|9|2360243-2361133|CRISPRCasFinder,CRT,PILER-CR
CACTCTGTCCCCTGTTATTCGGGATAGTTATCGATCACCGACGTTTTATTACCTATTGAGCAACTATTACCGTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCTACAAATGAATTAATCAGTGACATGAAAGATGAGTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCCCTAAAATATTTTTATTAGGTAATGCCGTTAACTTATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCTAGAAAAAAGGAGGGTGTTATTCATGGAAGAAATATATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCTGATGTAAGAGAAATGATGAAAGATGACGAAGTTGTATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCCAAGAATTTAAAGATAACGAATTGAACGGGTTTATATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCACAGGATTGTATCTTTTAATAGAGAACAACACTATTAATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCGTAGACAGACACATAAAAAATTATGTAAATAGTATAATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCATCGGAATTAATGAACTTATAGAATTAGAAAATTATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCCAAGATCATAGATGATCTGAAAGGGTGGAAAAAAATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCAGATAATCTAGGTATCGGAATTAATGAACTTATAGAATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATCCAAAGTAGAACAATTAGCAGAAATGGCGAGAGAAGTATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC

>NZ_CP029681|9|9|2360243-2361133|CRISPRCasFinder
CACTCTGTCCCCTGTTATTCGGGATAGTTATCGATC	ACCGACGTTTTATTACCTATTGAGCAACTATTACC
GTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TACAAATGAATTAATCAGTGACATGAAAGATGA
GTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CCTAAAATATTTTTATTAGGTAATGCCGTTAACTT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TAGAAAAAAGGAGGGTGTTATTCATGGAAGAAATAT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TGATGTAAGAGAAATGATGAAAGATGACGAAGTTGT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAGAATTTAAAGATAACGAATTGAACGGGTTTAT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	ACAGGATTGTATCTTTTAATAGAGAACAACACTATTA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	GTAGACAGACACATAAAAAATTATGTAAATAGTATA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	ATCGGAATTAATGAACTTATAGAATTAGAAAATT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAGATCATAGATGATCTGAAAGGGTGGAAAAAA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	AGATAATCTAGGTATCGGAATTAATGAACTTATAGA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAAGTAGAACAATTAGCAGAAATGGCGAGAGAAGT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC

>NZ_CP029681|9|2|2360243-2361133|CRT
CACTCTGTCCCCTGTTATTCGGGATAGTTATCGATC	ACCGACGTTTTATTACCTATTGAGCAACTATTACC
GTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TACAAATGAATTAATCAGTGACATGAAAGATGA
GTTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CCTAAAATATTTTTATTAGGTAATGCCGTTAACTT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TAGAAAAAAGGAGGGTGTTATTCATGGAAGAAATAT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TGATGTAAGAGAAATGATGAAAGATGACGAAGTTGT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAGAATTTAAAGATAACGAATTGAACGGGTTTAT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	ACAGGATTGTATCTTTTAATAGAGAACAACACTATTA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	GTAGACAGACACATAAAAAATTATGTAAATAGTATA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	ATCGGAATTAATGAACTTATAGAATTAGAAAATT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAGATCATAGATGATCTGAAAGGGTGGAAAAAA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	AGATAATCTAGGTATCGGAATTAATGAACTTATAGA
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAAGTAGAACAATTAGCAGAAATGGCGAGAGAAGT
ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC

>NZ_CP029681|9|3|2360315-2360777|PILER-CR
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TACAAATGAATTAATCAGTGACATGAAAGATGAG
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CCTAAAATATTTTTATTAGGTAATGCCGTTAACTTA
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TAGAAAAAAGGAGGGTGTTATTCATGGAAGAAATATA
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	TGATGTAAGAGAAATGATGAAAGATGACGAAGTTGTA
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	CAAGAATTTAAAGATAACGAATTGAACGGGTTTATA
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	ACAGGATTGTATCTTTTAATAGAGAACAACACTATTAA
TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000208937.1\|2354678_2355587_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP029681.1\|WP_000608705.1\|2351654_2352389_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP029681.1\|WP_000153149.1\|2353653_2354676_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP029681.1\|WP_000655859.1\|2359263_2360169_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP029681.1\|WP_001024805.1\|2362903_2363215_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368760
NZ_CP029681.1\|WP_000359017.1\|2356671_2358945_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP029681.1\|WP_000286998.1\|2355597_2356242_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP029681.1\|WP_001015193.1\|2362149_2362371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000175888.1\|2363308_2363647_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368749
NZ_CP029681.1\|WP_000676592.1\|2363735_2365415_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP029681.1\|WP_000251226.1\|2349191_2350127_-\|DUF4297-domain-containing-protein	unknown	unknown	gnl\|CDD\|372918
NZ_CP029681.1\|WP_000281076.1\|2358958_2359264_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NZ_CP029681.1\|WP_000865879.1\|2352385_2353654_-\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
NZ_CP029681.1\|WP_001092190.1\|2362385_2362889_-\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|226783
NZ_CP029681.1\|WP_000599362.1\|2356243_2356669_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
NZ_CP029681.1\|WP_001058155.1\|2367255_2367624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001038847.1\|2368920_2370909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000283873.1\|2367616_2368726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237876
NZ_CP029681.1\|WP_072093071.1\|2361546_2361858_+\|DUF3387-domain-containing-protein	unknown	unknown	gnl\|CDD\|378743
NZ_CP029681.1\|WP_001015575.1\|2365639_2367256_-\|primase	unknown	unknown	gnl\|CDD\|225913

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000208937.1\|2354678_2355587_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	3.0078e-40
NZ_CP029681.1\|WP_000608705.1\|2351654_2352389_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.10684e-15
NZ_CP029681.1\|WP_000153149.1\|2353653_2354676_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.06095e-17
NZ_CP029681.1\|WP_000655859.1\|2359263_2360169_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.00185e-113
NZ_CP029681.1\|WP_001024805.1\|2362903_2363215_-\|hypothetical-protein	gnl\|CDD\|368760	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960). This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.	6.74747e-26
NZ_CP029681.1\|WP_000359017.1\|2356671_2358945_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP029681.1\|WP_000286998.1\|2355597_2356242_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.36094e-106
NZ_CP029681.1\|WP_000175888.1\|2363308_2363647_-\|hypothetical-protein	gnl\|CDD\|368749	pfam06106, SAUGI, S. aureus uracil DNA glycosylase inhibitor. Uracil-DNA glycosylase inhibitors, are DNA mimic proteins that prevent the DNA binding sites of UDGs (Uracil DNA glycosylase) from interacting with their DNA substrate. SSP0047 (SAUGI; for Staphylococcus aureus uracil-DNA glycosylase inhibitor) acts as a uracil-DNA glycosylase inhibitor that breaks the uracil-removing activity of S. aureus uracil-DNA glycosylase (SAUDG) pfam03167. The SAUGI/SAUDG complex has been determined, and shows that SAUGI binds to the SAUDG DNA binding region via several strong interactions, by using a hydrophobic pocket to hold SAUDG's protruding residue (i.e. SAUDG Leu184, E. coli UDG Leu191 and B. subtilis UDG Phe191). By binding to SAUDG in this way, SAUGI thus prevents SAUDG from binding to its DNA substrate and performing DNA repair activity.	8.57061e-38
NZ_CP029681.1\|WP_000676592.1\|2363735_2365415_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	6.7072e-34
NZ_CP029681.1\|WP_000251226.1\|2349191_2350127_-\|DUF4297-domain-containing-protein	gnl\|CDD\|372918	pfam14130, DUF4297, Domain of unknown function (DUF4297). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is typically between 207 and 221 amino acids in length.	0.00217205
NZ_CP029681.1\|WP_000281076.1\|2358958_2359264_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	4.06918e-22
NZ_CP029681.1\|WP_000865879.1\|2352385_2353654_-\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	1.16357e-132
NZ_CP029681.1\|WP_001092190.1\|2362385_2362889_-\|DUF1643-domain-containing-protein	gnl\|CDD\|226783	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown].	1.3268e-79
NZ_CP029681.1\|WP_000599362.1\|2356243_2356669_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	7.59929e-21
NZ_CP029681.1\|WP_000283873.1\|2367616_2368726_-\|hypothetical-protein	gnl\|CDD\|237876	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional.	1.53397e-08
NZ_CP029681.1\|WP_072093071.1\|2361546_2361858_+\|DUF3387-domain-containing-protein	gnl\|CDD\|378743	pfam11867, DUF3387, Domain of unknown function (DUF3387). This domain is functionally uncharacterized. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with pfam04851, pfam04313.	4.08117e-39
NZ_CP029681.1\|WP_001015575.1\|2365639_2367256_-\|primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	3.31891e-21

>NZ_CP029681.1|WP_000655859.1|2359263_2360169_-|type-II-CRISPR-associated-endonuclease-Cas1
MKDVIYVENHYFVTVKENSIKFRNVIDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIFCDKKHSPLTQLISSYGMTHRLQRIQSQFQLSGRTRDRIWKKIVVNKIINQSKCLENNLHNENVKLLVNLAKDVSSGDKSNKEAQAARIYFKDLYGKQFKRGRYNDIINSGLNYGYSILRSFIKKELALHGFEMSLGINHRSKENPFNLADDIIEVFRPFVDNIVYEIVFKKNINTFDVNEKKLLLNVLYEKCIIDKKVVRLLDSVKIVIQSLIRCYEENTPTYLLLPKMIEVGN
>NZ_CP029681.1|WP_000281076.1|2358958_2359264_-|CRISPR-associated-endonuclease-Cas2
MYLLVSFDLPRDTKFERRVASKYRTRLLELGFSMKQFSLYERYVSDVQKKDKILEILQQEIPDTGSITLYVLPDEVNNSQITILGKEVKVVVRKEPKLIFL
>NZ_CP029681.1|WP_000359017.1|2356671_2358945_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDKKTTLMYGSLLHDIGKIIYRSNDHAFARGTHSKLGYNFLSQFSEFKDNEVLDSIAYHHYKELAKANLANDNTAYITYIADNIASGIDRRDVIEEGDEEYEKQAFNFDKYTPLYSVFNIVNSEKLKQISGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSYDLEHKLSIKEDTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFTKYENTKEFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLEIMLEVIVDQLLEKLELTRANLLYTGGGHAYLLVSNTDKGKEKINQFNTELKNWFMSEFTTDLSLSIAFEKCSGNDLMNTSGNYRNIWRNVSSKLSDIKAHKYSSEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFDKFISVIDYEEAERLAQNNNHIRIYSKNKPYIGVGISTNLWMCDYDYASQNKDMREKGIGSYVEREEGIKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEVSVYINEKFKDFTLGKLTMSAGVGMFSGKYPISKMAFETGLLEEAAKTDEKNQIALWVQEKVYNWDEFKKYILEEKLLVLQHGFSQTDEHGKAFIYKMLALLRNNETINIARLAYLLARSKMTEEFTSKIFNWAQNDKDKNQLITALEYYVYQIREVD
>NZ_CP029681.1|WP_000599362.1|2356243_2356669_-|type-III-A-CRISPR-associated-protein-Csm2
MILAKTKSGKKIDLTFAHEVVKSNVKTVKDKRGKENQVLFNGLTTSKLRNLMEQVNRLYTIAFNSTEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIQKESKKFFLDYCKYFEALVAYAKYYQKED
>NZ_CP029681.1|WP_000286998.1|2355597_2356242_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAKHFGLKMKQENHNQDDESVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVENDFENIEKAIHLLENDYLGGGGTRGNGRIQFNDITIETVVGEYDSTNLKIK
>NZ_CP029681.1|WP_000208937.1|2354678_2355587_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MTTKVFKLSFKTPVHFGKKRLSDGEMTITSDTLFSALFIEALQLGIETDWLLNDLIISDTFPYENEIYYLPKPLIKIESKEEGNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFSIGHFSLQTKVSLSAQEIDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDQLKDIMTSLQYSGLGGKRNAGYGQFEYEIINNQQLFKLLNQNGEHSILLSTAMAKEDEIKSALKEARYILNKRSGFIQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDVFNVGHNGKHPVYRYAKPLWLEV
>NZ_CP029681.1|WP_000153149.1|2353653_2354676_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTIKNYEVVIKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNILDTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWKAFVSYSEKVNQGKKYGNIRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTALVSKYNNEKNTDVYSKIKVSDSEPIDERHLAIYQKIDINKSEKPMPLYRECVDVDTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGMPDVLNQNILFLGAGAGFVSKTTHYQLKSREQAKRDSFDILTKKFRRTYGKMKEMPSNVPVALKGTTNQSLHVSYQQGMCKISFQELNNEVL
>NZ_CP029681.1|WP_000865879.1|2352385_2353654_-|type-III-A-CRISPR-associated-protein-Csm6
MKVLFSPIGNSDPWSNDRDGAMLHIVRHYKPDVVVLFFTESIWNGNRNIPGRKNFDWENIVSKVSSRTKVDIKVDSIKYENDFDSYKDIFHFYINEIRTKYSDAEILLNVTSGTPQMESTLCLEYISNPHNMKCIQVSTPAPIEGPKRSFAKLETVTEDLNKVNANEKMASNRSKSINIISFREVMVRSQIKSLVNNYDYEGALNLVSDQKSFRNGKLLRKRLLELTNQIKTHEVFPEINDKYRSVALKKSLFHYLLLNMRYNRLDVAETLIRVKSIAEFILKTYIVGHWPTLIIEKDDKPYLNAEDNLSFIYKYKLLLEKRRQNLDVSRILGLPAFIDILTVLEPNSKLLKEVNAVNDINGLRNSIAHNLETLDLDKNKNYKKIMLSVEAIKNMLHISFPEIEEKDYNYFERKNKEFRELL
>NZ_CP029681.1|WP_000608705.1|2351654_2352389_-|CRISPR-associated-endoribonuclease-Cas6
MINKITVELDLPDSIRFQYLGSILHGVLMDYLPNDIADQLHHEFAYSPLKQRIYHKNKKVIWEIVCMSDRLFNEIAELFTSKNRLFLKYYQVYIEIYSFNIEKVNVQNIMNQLLETEELNRYVRINIQTPMSFKYQSNYMIFPEVKRFFRSIMIQFDAFFEEYKMYDKETLDFLEKNINIVDYKLKSTRFNLEKVKIPSFTGEIVFKIKGPLPFLQLTHFLLKFGEFSGSGMKTSLGMGKYSII
>NZ_CP029681.1|WP_000251226.1|2349191_2350127_-|DUF4297-domain-containing-protein
MVRENGGANAQRGFNYQNCVISLVAIRNYKKPNFKIYVEADEDFEVNYGDDYHACIQVKGEKNLTFNKLLKGENGKLSIFEKNLSSGKSDSVYKIVVFSFSRKDMESMQEQTDEEELFSNSWLLSNDQKNKVNNDRVENFSLVKTAFDNDMKNARIYLKGELVQQNIVVEGRAEVILNELFQQILQKSEKKVQTEQDKELKKITSKELDLILQKITAKARFEKELKNLRFNSLKEEKIKKEEKKIILEYMAVKKAVIRFLKSDEEKLENNSISTLISETFNLSEMNCLSENTKYAIAISAYCDILEEIAYE
>NZ_CP029681.1|WP_072093071.1|2361546_2361858_+|DUF3387-domain-containing-protein
MLSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLRNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFLRCFSFT
>NZ_CP029681.1|WP_001015193.1|2362149_2362371_-|hypothetical-protein
MNHETTHSDWRTVANCLASQNYISIVKGLVHHFTAIEDEEILDKIYEDFMNNGSITTVLNNDLQDIINYYLSK
>NZ_CP029681.1|WP_001092190.1|2362385_2362889_-|DUF1643-domain-containing-protein
MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKPVCTVITMYPHLDGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAISESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNDIMHPLNPKARQKWILK
>NZ_CP029681.1|WP_001024805.1|2362903_2363215_-|hypothetical-protein
MNINRYITRGISEQLSLDLQILLWHMVEEKDNQPHTDYLHIFKLQEDDNMLSITHEQEQPAYKLEYHYINYEKNQNALPKKVYVIREDDVDVFYYVMLLPEEY
>NZ_CP029681.1|WP_000175888.1|2363308_2363647_-|hypothetical-protein
MTLSKQLKTYITERFKLNYQETWACETIDAVAEDVLPEKYIKNSPLEHKILNTFTYYNDELHEISIYPFLCYLDKELVAIGYLDNFDLDFIFLNDTHQIIIDERYLLQKGGE
>NZ_CP029681.1|WP_000676592.1|2363735_2365415_-|recombinase-family-protein
MKGKIALYSRVSTSEQSEHGYSEKEQEQLLIKEVMKNFPGYDYETYTDSGISGKNIEGRPAMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEHDVGYKSISENIDTSNASGEVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRVLGYKLSLNPLTQKNDLVIDENEAHIVREIFDLYLNHNKGFKAITTILNQKGYRTINQKPFSVFGVKYILNNPVYKGYVRFNNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEDVFDQVHEKLASKSFKPGRPIGGDFYLRGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYYICSLFNRSGSSACHSNAINAEVVERVINVHLNRILSQPNVIKQIASSVIEELKQKHSKQTEIKYDIDSLEKQKAKVKTQQERLLELFLDDEMDSEMLKAKQSEMNQQLEVLDQQIKEAKQANQSQDDIPNFDKLKARLILMITRFSVYLRKATPEAKNQLMKMLIDSIEITTDKQVKLVRYKIDESLIPQSLKKDWGSFFIPKFNFVINVTKKNRIENLSLLPLF
>NZ_CP029681.1|WP_001015575.1|2365639_2367256_-|primase
MNHILEMLIKLLKVGMEAIDRKGLIAILTSSIGNDEMDDSEQAVMVYNELIDKLQLNIPKDVDYRPNIYSYFGIQKKPNDTILVEMMICIFHIKRFDSELFVFKDKGWQKVSEDELQGLISKMIQVLLVDYKPSLSTLKNVVDGIQKSTDIEKLVEHRQYIGCGRNMFNLKTFKVVDNDLEIFPKTRLDLELDINDTITDKIPPNFKQYMLELANYDHDLQYFLFQHMAVLLTADTKLRRGLFLYGTAKNGKSVYIKLVKSFFYSNDIVSKTLNELGGRFDKESLIGKRIMASDEVGKANIDEATVNDFKKLLSVEPIHADRKGRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKLQDEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLNFGYEFVSSKSANIAHQKACINLLRKLIEIKPGSRIKVSRLNEVIRDEIKVSSQVINDLVQANFNVQSRLNNGYKYWVDLGWKETDKKDDMISFDKNENVTDDEFLYEDDLNLGWEDFDDE
>NZ_CP029681.1|WP_001058155.1|2367255_2367624_-|hypothetical-protein
MNNDRGKSLQIPQSTLLKEGSIYVATLHSVYEKNFSGDIKHQFTYEVELNQETHYVNRNITVKSMSHQLSIADWIKRHSNYNVNHINYDPYIDRKHLVLVGQYNGNYYIQDVAPLDEFGGVL
>NZ_CP029681.1|WP_000283873.1|2367616_2368726_-|hypothetical-protein
MYQANIRDLITKLPQSNKTEHFLMNKFSNQDKVQQLQRQISQQLDQQYNELLANEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLFDRLDQSLNGTNRLYTQLSLIGTRTHRITTKRFNVQGLPKLVQQMILPSQFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDALLRDLSLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKVIEFKEQVEKYKTMPTPYGIEHDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEKKTFKIIVPIHDAIMIECNDKGIAQNVAQLMKDTANQLFNGEFAHVTVEALGGIDNE
>NZ_CP029681.1|WP_001038847.1|2368920_2370909_-|hypothetical-protein
MNKNITALKSTENTTYMQYTVHIDDQIINNIKECTKKFKILPMEDKIPLSPLLQPEYAGEVQDFISTYEQFMINFGKVILDSQGIKIQFESESLSSIQRGIQEHCYLNERTNDIDVTKEWYLCKFSNQILEEDKNQLYNALKQLMNDSKNKKQAFQEVFKVHIDIYLYNKEKSEYKYQVSSYFNLVKENPKITYKKRHLQEKQGVKGTTFTNKLKLLNKMYGVDVAKYQPFYNSNNPEYERGQFGERYISQRSNYEFNRLQYQIIDMLSKILDKHPLPKSDNNYKHIPTIEKAILSGDSHSFYEYFEDIMKEIISMENSSLKEKLLTDFTYQSQCRWYSESEKLKLQLESFMHKVLESNYYEGNKLYRMLSHAIEETINEADEDKVHFNYFKDYFLTDGGVKNWEQISEKITEFNGKVINDIQNEYNKIQFNNANRNQKLNFNYLYHCFEFSNNLVKARVNGNRGYILYFVDKYKIKMPFLDQLLINYLNQEIGQESINYNMQTLFEKERYDRSSTIEKLVATSKFKYEKDDSDLFKQLFNDVENSIDRLGIYLLNNGINSNDENARYYRSFLKELSRIKSKLTPFSLEISKSSGREQHYPDDAIDDKDERRKNKEETYHAFDDKSDIDSKLKNKINVSIDNLLSVKIKSNLYDISPNTKKQ

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Crispr_ID: NZ_CP029681_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_10

2657036-2657169

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP029681_10

>merge|NZ_CP029681|10|2657036-2657169|PILER-CR
TATTGAAGAAGATACAAATAAAGATAAACCAAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGCGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>NZ_CP029681|10|4|2657036-2657169|PILER-CR
TATTGAAGAAGATACAA	ATAAAGATAAACCAAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGCGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000679366.1\|2654221_2654422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000386367.1\|2662365_2663109_-\|HTH-type-transcriptional-regulator-SarU	unknown	unknown	gnl\|CDD\|130944
NZ_CP029681.1\|WP_010956661.1\|2669765_2669999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_110184797.1\|2671107_2672916_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP029681.1\|WP_000586384.1\|2645971_2647795_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP029681.1\|WP_000217723.1\|2670105_2670414_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_001790696.1\|2654470_2654572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_110179771.1\|2664092_2668208_+\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|375909
NZ_CP029681.1\|WP_000481425.1\|2652729_2654088_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP029681.1\|WP_000678764.1\|2670557_2670824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000966101.1\|2668591_2669785_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP029681.1\|WP_000721337.1\|2661288_2662155_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP029681.1\|WP_000074005.1\|2649437_2650202_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP029681.1\|WP_000289134.1\|2648580_2649273_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP029681.1\|WP_000998872.1\|2663431_2663788_+\|HTH-type-transcriptional-regulator-SarT	unknown	unknown	gnl\|CDD\|130944
NZ_CP029681.1\|WP_000660709.1\|2643784_2645062_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP029681.1\|WP_000841432.1\|2658319_2661109_+\|fibronectin-binding-protein-FnbB	unknown	unknown	gnl\|CDD\|371043
NZ_CP029681.1\|WP_000876662.1\|2651059_2652613_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP029681.1\|WP_001117047.1\|2647933_2648350_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|227213
NZ_CP029681.1\|WP_000990133.1\|2650355_2651036_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000386367.1\|2662365_2663109_-\|HTH-type-transcriptional-regulator-SarU	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	9.70785e-26
NZ_CP029681.1\|WP_110184797.1\|2671107_2672916_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP029681.1\|WP_000586384.1\|2645971_2647795_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	3.71047e-89
NZ_CP029681.1\|WP_000990133.1\|2650355_2651036_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.91306e-44
NZ_CP029681.1\|WP_000660709.1\|2643784_2645062_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.24287e-91
NZ_CP029681.1\|WP_000481425.1\|2652729_2654088_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.53789e-168
NZ_CP029681.1\|WP_000966101.1\|2668591_2669785_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27522e-57
NZ_CP029681.1\|WP_000721337.1\|2661288_2662155_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.5142e-177
NZ_CP029681.1\|WP_000289134.1\|2648580_2649273_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	5.59791e-85
NZ_CP029681.1\|WP_000998872.1\|2663431_2663788_+\|HTH-type-transcriptional-regulator-SarT	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	4.06037e-28
NZ_CP029681.1\|WP_000841432.1\|2658319_2661109_+\|fibronectin-binding-protein-FnbB	gnl\|CDD\|371043	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin. This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). SdrG binds to its ligand with a dynamic "dock, lock, and latch" mechanism which represents a general mode of ligand-binding for structurally related cell wall-anchored proteins in most Gram-positive bacteria. The C-terminal part of SdrG(276-596) is integral to the folding of the immunoglobulin-like whole to create the docking grooves necessary for Fg binding. The domain is associated with families of Cna_B, pfam05738.	9.9461e-35
NZ_CP029681.1\|WP_110179771.1\|2664092_2668208_+\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|375909	pfam18483, Bact_lectin, Bacterial lectin. This entry primarily matches to legume-like lectin domains found in prokaryotes.	1.63043e-17
NZ_CP029681.1\|WP_000074005.1\|2649437_2650202_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.57514e-33
NZ_CP029681.1\|WP_000876662.1\|2651059_2652613_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP029681.1\|WP_001117047.1\|2647933_2648350_+\|DUF2188-domain-containing-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	9.39579e-63

>NZ_CP029681.1|WP_001790696.1|2654470_2654572_+|hypothetical-protein
MLLKTEQYRLAFIKFKKLMNFAFKGRYYSEKQS
>NZ_CP029681.1|WP_000679366.1|2654221_2654422_+|hypothetical-protein
MKGVLRHVFVRIVQAIIMKRLVYCFKLDNDEFNLKNKYKKYKSCVTRVSDDLNTIYRYISNNKIIN
>NZ_CP029681.1|WP_000481425.1|2652729_2654088_+|gluconate-permease
MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV
>NZ_CP029681.1|WP_000876662.1|2651059_2652613_+|gluconokinase
MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSEENPDELFDAVLMTIKYVMRESKVNKDDIKFVSFSAQMHSLIAMDQKHQRLTNNITWADNRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLVKIFWMKHEWQDVFQRTAKFADIKTYIFYHLFDTYIIDYSMASATGMFNLETLDWDVGALELLGISKEMLPELVPTTYVMKGMKERYATLMGLNEDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIAKRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHMIRAALEGVLYNLYTVYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGLKAVGDIEDFSIVSSMVGATNNHTPFEENVAVYQELVSIFINLSRSLTENYEQIADFQRQHMAENKTQ
>NZ_CP029681.1|WP_000990133.1|2650355_2651036_+|GntR-family-transcriptional-regulator
MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
>NZ_CP029681.1|WP_000074005.1|2649437_2650202_+|MerR-family-transcriptional-regulator
MSNYSTGELAKLCNVTTRTIQYYDRKGILKPQGFTEGKRRVYTEQQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLNKIKNVQYYVNEASTSPITHLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSIISAILMKNKWPFLIALPFMICYGIGVTFYYQQKVAYLCPNCQHIFSPSLWAVIKAKHTATTRRFECPNCHETHYCIEVPKAHMSTEQLEISRIQHNN
>NZ_CP029681.1|WP_000289134.1|2648580_2649273_+|GTP-pyrophosphokinase-family-protein
MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNKAETEKYRDLLKECATEITEVENKLQQIHSEITE
>NZ_CP029681.1|WP_001117047.1|2647933_2648350_+|DUF2188-domain-containing-protein
MPFTMKGYPEKWKDFEVIKRQKAIEIANAMLKEGYLEKDVVPIAAKKAKDWYRALSKEEIKALEEENFVQFHTATMEKTEVDSEYATTDNEEHIQEQSNQDKSYFDSESIGNQSGGVRQREPLMDGPHPKVVESFKDV
>NZ_CP029681.1|WP_000586384.1|2645971_2647795_+|FUSC-family-protein
MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKSAFLQVAKTAVDNFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSEENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
>NZ_CP029681.1|WP_000660709.1|2643784_2645062_+|MFS-transporter
MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK
>NZ_CP029681.1|WP_000841432.1|2658319_2661109_+|fibronectin-binding-protein-FnbB
MKSNLRYGIRKHKLGAASVFLGTMIVVGMGQEKEAAASEQNNTTVEESGSSATESKASETQTTTNNVNTIDETQSYSATSTEQPSQSTQVTTEEAPTTVQAPKVETSRVDLASEKVADKKTTGTQVDTAQPSNVSEIKPRMKRSTDVAEVAEKEVVEEAKATGTDVTSKVTVENGSEIVGHKQDTNVVNPHNAERVTLKYKWKFGEGIKAGDYFDFTLSDNVETHGISTLRKVPEIKSSTEDKVMANGQVIGERKIRYTFTDYIDNKKDLTAELTLNLFIDPTTVTKQGMEKVEVSLGQNKVSKEFDIKYLDGVKDRMGVTVNGRIDTLNKADGKFSHFAYVKPNNQSLSSVTVTGQVTSGYKQNVKNPTVKVYKHIGSDELAESIYAKLDDVSKFEDVTGELTLQYTSNGGYSLNFNNLDQSKNYVIKYEGDYDSNASTLEFQTHLFGYYNYYYYNTSNLTWKNGVAFYSNNAQGDGKDKPNDPIIEKSEPIDLDIKSEPPVEKHELTGTIEESNDSKPIDFEYHTAVEGAEGHAEGIIETEEDSIHVDFEESTHENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEDSTKGIVTGAVSDHTTVEDTKEYTTESNLIELVDELPEEHGQAQGPIEEITENYQHISHSGLGTENGHGNYGVIEEIEENSHVDIKSELGYEGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIQGQNNGDQSFEEDTEEDKPKYEQGGNIIDIDFDSVPHIHGFNKHTEIIEEDTNKDKPNYQFGGHSSVDFEEDTLPQVSGHNEGQQTIEEDTTPPIVPPTPPTPEVPSEPEVPTPPTSEIPSEPGKPVPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVAPTKKAQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA
>NZ_CP029681.1|WP_000721337.1|2661288_2662155_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKELGL
>NZ_CP029681.1|WP_000386367.1|2662365_2663109_-|HTH-type-transcriptional-regulator-SarU
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFINKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLDLSILYVISSRKNEILNLKDLFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKILKPRKFFF
>NZ_CP029681.1|WP_000998872.1|2663431_2663788_+|HTH-type-transcriptional-regulator-SarT
MNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDIISYIGIDQSRIVKSVKELSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
>NZ_CP029681.1|WP_110179771.1|2664092_2668208_+|YSIRK-type-signal-peptide-containing-protein
MRDKKGPVNKRVDFLSNKLNKYSIRKFTVGTASILIGSLMYLGTQQEAEAAENNIENPTTLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEPSVKAEDISKKEDTPKEVADVAEVQPKSSVTHNAETPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSVDIQSNPEDLKVSEVTRFNNKSIGKNELTGALQLKNKVSFKNDFEFNIRVANNHQSVTTGADGWGFLFSKGDGNEYLQKGGILGPKGMENSAGFKIDTGYNFKDPMDKEEKQAGQGFKGYGTFVKTGADGTTAKVGTNIPTRGKADNSFQYADNSIDTTDGKFHGQLLNNLKLAYNEKSGIMRAEYAGKVWEANISDLGLDKSEAYNFLITSSQRQGTSQGVYANGWMRTDLNNSTFKLTPNLVKKTEIKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPIDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKIVEFGGEKPKDPKGPENPEKPSRPTHPSGPVNPDNPGLSKDRAKPNEPVHSMDKNDKVKKSKIAKKSVANQEKKRAELPKTGAESTQKGLIFSSIIGIAGLMLLARRRKN
>NZ_CP029681.1|WP_000966101.1|2668591_2669785_+|MFS-transporter
MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFIIFGIFGGAYSDKHNKKKILYLSDLILSLIIIIIPLLAITSNLNYLTLLTISTAITIINCYTDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILLFLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKQSKEIPFIIIIQFACILINTGLWRVVLPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSIINVFPSVAILYIGATLLGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLGLISLIIPLLSLSNIFISGGAIISMLSLAGLKFVKKSM
>NZ_CP029681.1|WP_010956661.1|2669765_2669999_+|hypothetical-protein
MLRSLCKHNRILINAIKVGIEMKYKISLAYNLAIIIGSLIILCILISRGYDIYVILIPILTILASLINLFCDIKKHK
>NZ_CP029681.1|WP_000217723.1|2670105_2670414_-|hypothetical-protein
MTVNIVVSIVFCISMVILGIYVAITKDFTLISYINQTTIADKHKNQIAYIFALCISLSAVFLMSAILCFEYDFIALAFLFLTIALLLIALFYVCFYKITKYP
>NZ_CP029681.1|WP_000678764.1|2670557_2670824_-|hypothetical-protein
MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD
>NZ_CP029681.1|WP_110184797.1|2671107_2672916_-|phospho-sugar-mutase
MHFHTHLLYNTCEKYCLGAVFFYFWDVFLYNSLHKCKGFSFHVLLSLTEILKGCLATMDKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLSRYLNAQTNNPTIVIHYDIRHLSTEFAQIIANVLANHQITVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKDYNGIKVYGSDGAQLSTDASELASRYIEEVGDPLQIDIPSSKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPELLKSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELANKSHADLLISTDPDADRLGIAERDAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSELTKSLARYNNVEYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKIESIMTHFRSNPPQEIQGLKVKAIEDYLTSEVYHLDKDTTSQINSPKSNVIRVLFDEGFIALRPSGTESKIKLYVSLKCPNFDDVAQKINAMIFS

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Crispr_ID: NZ_CP029681_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029681_11

2753191-2753288

Orphan

Consensus_repeat	Method
GCCTTTCTAGCTCATAAAATTCGCAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029681_11

>merge|NZ_CP029681|11|2753191-2753288|CRISPRCasFinder
GCCTTTCTAGCTCATAAAATTCGCAGAAAATAAAGGAACGCATTAGATAGCTTCGCTACTAATGCATAAGCCTTTCTAGCTCATAAAATTCGCAGAAA

>NZ_CP029681|11|10|2753191-2753288|CRISPRCasFinder
GCCTTTCTAGCTCATAAAATTCGCAGAAA	ATAAAGGAACGCATTAGATAGCTTCGCTACTAATGCATAA
GCCTTTCTAGCTCATAAAATTCGCAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029681.1\|WP_000200946.1\|2746887_2747355_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP029681.1\|WP_001046645.1\|2744073_2745081_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP029681.1\|WP_001789935.1\|2752769_2752874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000825921.1\|2757298_2758078_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP029681.1\|WP_000162803.1\|2761488_2762088_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP029681.1\|WP_000792552.1\|2751364_2752675_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288473
NZ_CP029681.1\|WP_000479576.1\|2758058_2758778_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP029681.1\|WP_001125208.1\|2754620_2755307_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
NZ_CP029681.1\|WP_000038960.1\|2755738_2757178_+\|multidrug-efflux-MFS-transporter-MdeA	unknown	unknown	gnl\|CDD\|129794
NZ_CP029681.1\|WP_000783428.1\|2747406_2748384_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
NZ_CP029681.1\|WP_000594519.1\|2749900_2750830_-\|bi-component-gamma-hemolysin-HlgAB-subunit-A	unknown	unknown	gnl\|CDD\|369625
NZ_CP029681.1\|WP_000819843.1\|2761107_2761470_+\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP029681.1\|WP_000762708.1\|2755460_2755565_-\|putative-metal-homeostasis-protein	unknown	unknown	unknown
NZ_CP029681.1\|WP_000286879.1\|2746184_2746877_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP029681.1\|WP_000019127.1\|2753427_2754294_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP029681.1\|WP_000615461.1\|2758774_2759506_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP029681.1\|WP_001110069.1\|2742713_2744072_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP029681.1\|WP_001012228.1\|2759602_2760853_-\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
NZ_CP029681.1\|WP_000916704.1\|2748385_2749333_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625
NZ_CP029681.1\|WP_000971546.1\|2745058_2746174_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234

Protein	Function_ID	Function_description	E-value
NZ_CP029681.1\|WP_000200946.1\|2746887_2747355_+\|hypothetical-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00158559
NZ_CP029681.1\|WP_001046645.1\|2744073_2745081_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP029681.1\|WP_000825921.1\|2757298_2758078_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.11829e-100
NZ_CP029681.1\|WP_000162803.1\|2761488_2762088_+\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	2.24775e-30
NZ_CP029681.1\|WP_000792552.1\|2751364_2752675_-\|hypothetical-protein	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	1.70632e-25
NZ_CP029681.1\|WP_000479576.1\|2758058_2758778_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.98247e-78
NZ_CP029681.1\|WP_001125208.1\|2754620_2755307_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
NZ_CP029681.1\|WP_000038960.1\|2755738_2757178_+\|multidrug-efflux-MFS-transporter-MdeA	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.41176e-92
NZ_CP029681.1\|WP_000783428.1\|2747406_2748384_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
NZ_CP029681.1\|WP_000594519.1\|2749900_2750830_-\|bi-component-gamma-hemolysin-HlgAB-subunit-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.31899e-97
NZ_CP029681.1\|WP_000819843.1\|2761107_2761470_+\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.11961e-31
NZ_CP029681.1\|WP_000286879.1\|2746184_2746877_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	2.9803e-130
NZ_CP029681.1\|WP_000019127.1\|2753427_2754294_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.54055e-90
NZ_CP029681.1\|WP_000615461.1\|2758774_2759506_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.20826e-144
NZ_CP029681.1\|WP_001110069.1\|2742713_2744072_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP029681.1\|WP_001012228.1\|2759602_2760853_-\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP029681.1\|WP_000916704.1\|2748385_2749333_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93
NZ_CP029681.1\|WP_000971546.1\|2745058_2746174_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	1.99808e-138

>NZ_CP029681.1|WP_001789935.1|2752769_2752874_+|hypothetical-protein
MLTNRLTSVNYVKKRLIQNIQRILSKEVLYGEMQ
>NZ_CP029681.1|WP_000792552.1|2751364_2752675_-|hypothetical-protein
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDKSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAITKLQKNDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYTDKYFKYKGTIDKTVLSVFGNGYKSYIQPLKVEDQKNYVSKSYAQVRNYVTETLNTGKVLYAFYQNPKVVKAAITTAETASSIKNTLSNLLSFWK
>NZ_CP029681.1|WP_000594519.1|2749900_2750830_-|bi-component-gamma-hemolysin-HlgAB-subunit-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>NZ_CP029681.1|WP_000916704.1|2748385_2749333_-|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
>NZ_CP029681.1|WP_000783428.1|2747406_2748384_-|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>NZ_CP029681.1|WP_000200946.1|2746887_2747355_+|hypothetical-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTMRKRMAVLLR
>NZ_CP029681.1|WP_000286879.1|2746184_2746877_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDNRIDLNHYISFLESTPKQVVYETV
>NZ_CP029681.1|WP_000971546.1|2745058_2746174_+|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAEYPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>NZ_CP029681.1|WP_001046645.1|2744073_2745081_+|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>NZ_CP029681.1|WP_001110069.1|2742713_2744072_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIESTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>NZ_CP029681.1|WP_000019127.1|2753427_2754294_+|cation-transporter
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNAITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>NZ_CP029681.1|WP_001125208.1|2754620_2755307_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>NZ_CP029681.1|WP_000762708.1|2755460_2755565_-|putative-metal-homeostasis-protein
MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK
>NZ_CP029681.1|WP_000038960.1|2755738_2757178_+|multidrug-efflux-MFS-transporter-MdeA
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGVVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAGFLFALLITVVSFFCSFMLQGKKKEVDSRQ
>NZ_CP029681.1|WP_000825921.1|2757298_2758078_+|transporter-substrate-binding-domain-containing-protein
MKRLLFVMIAFVFILAACGNNSSKDKEANKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>NZ_CP029681.1|WP_000479576.1|2758058_2758778_+|amino-acid-ABC-transporter-permease
MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>NZ_CP029681.1|WP_000615461.1|2758774_2759506_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE
>NZ_CP029681.1|WP_001012228.1|2759602_2760853_-|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKHNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALKESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPMFYKIQQYLNHKRR
>NZ_CP029681.1|WP_000819843.1|2761107_2761470_+|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>NZ_CP029681.1|WP_000162803.1|2761488_2762088_+|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPFCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029681_2	2.1\|1275875\|26\|NZ_CP029681\|CRISPRCasFinder	1275875-1275900	26	NZ_CP029681.1	1065932-1065957	0	1.0
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	79770-79800	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	753689-753719	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	1066024-1066054	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	1275909-1275939	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	1758938-1758968	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	2049955-2049985	1	0.968
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	2626642-2626672	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	79770-79800	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	753689-753719	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	1066024-1066054	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	1275909-1275939	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	1758938-1758968	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	2049955-2049985	1	0.968
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	2626642-2626672	1	0.968
NZ_CP029681_2	2.1\|1275875\|26\|NZ_CP029681\|CRISPRCasFinder	1275875-1275900	26	NZ_CP029681.1	1544769-1544794	1	0.962
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	577694-577725	1	0.969
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	2049782-2049813	1	0.969
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	2049837-2049868	1	0.969
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	79820-79844	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	426112-426136	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	577713-577737	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	753622-753646	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	977451-977475	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	977509-977533	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1066097-1066121	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1376300-1376324	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1586887-1586911	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1586945-1586969	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1587003-1587027	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1587061-1587085	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1759011-1759035	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	2049801-2049825	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	2049856-2049880	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	2253986-2254010	1	0.96
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	2576141-2576165	1	0.96
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	68853-68883	2	0.935
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	1544673-1544703	2	0.935
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NZ_CP029681.1	1587128-1587158	2	0.935
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	68853-68883	2	0.935
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	1544673-1544703	2	0.935
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NZ_CP029681.1	1587128-1587158	2	0.935
NZ_CP029681_2	2.1\|1275875\|26\|NZ_CP029681\|CRISPRCasFinder	1275875-1275900	26	NZ_CP029681.1	1496040-1496065	2	0.923
NZ_CP029681_2	2.1\|1275875\|26\|NZ_CP029681\|CRISPRCasFinder	1275875-1275900	26	NZ_CP029681.1	2462532-2462557	2	0.923
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	68912-68943	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	416775-416806	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	1586899-1586930	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	1586957-1586988	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	1587015-1587046	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	1758992-1759023	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	2253967-2253998	2	0.938
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	NZ_CP029681.1	2576122-2576153	2	0.938
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	68900-68924	2	0.92
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1061607-1061631	2	0.92
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	NZ_CP029681.1	1579746-1579770	2	0.92

1. spacer 2.1|1275875|26|NZ_CP029681|CRISPRCasFinder matches to position: 1065932-1065957, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 79770-79800, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

3. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 753689-753719, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

4. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 1066024-1066054, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

5. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 1275909-1275939, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

6. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 1758938-1758968, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

7. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 2049955-2049985, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

8. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 2626642-2626672, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

9. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 79770-79800, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

10. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 753689-753719, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

11. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 1066024-1066054, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

12. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 1275909-1275939, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

13. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 1758938-1758968, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

14. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 2049955-2049985, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

15. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 2626642-2626672, mismatch: 1, identity: 0.968

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
**********************.********

16. spacer 2.1|1275875|26|NZ_CP029681|CRISPRCasFinder matches to position: 1544769-1544794, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

17. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 577694-577725, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacagacaatgcaagt	Protospacer
********************.***********

18. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 2049782-2049813, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaagcaatgcaagt	Protospacer
*********************.**********

19. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 2049837-2049868, mismatch: 1, identity: 0.969

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaagcaatgcaagt	Protospacer
*********************.**********

20. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 79820-79844, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

21. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 426112-426136, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

22. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 577713-577737, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

23. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 753622-753646, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

24. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 977451-977475, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

25. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 977509-977533, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

26. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1066097-1066121, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

27. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1376300-1376324, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

28. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1586887-1586911, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

29. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1586945-1586969, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

30. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1587003-1587027, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

31. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1587061-1587085, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

32. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1759011-1759035, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

33. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 2049801-2049825, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcgaaaagaaa	Protospacer
***** *******************

34. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 2049856-2049880, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcgaaaagaaa	Protospacer
***** *******************

35. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 2253986-2254010, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

36. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 2576141-2576165, mismatch: 1, identity: 0.96

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaaagaaa	Protospacer
***** *******************

37. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 68853-68883, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtg	Protospacer
****************** ***.********

38. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 1544673-1544703, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
********.*************.********

39. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to position: 1587128-1587158, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agcttacgaaaagtcagcttacaataatgtg	Protospacer
**** *****************.********

40. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 68853-68883, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtg	Protospacer
****************** ***.********

41. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 1544673-1544703, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
********.*************.********

42. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to position: 1587128-1587158, mismatch: 2, identity: 0.935

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
agcttacgaaaagtcagcttacaataatgtg	Protospacer
**** *****************.********

43. spacer 2.1|1275875|26|NZ_CP029681|CRISPRCasFinder matches to position: 1496040-1496065, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcctctgtgttggggccccg	Protospacer
********.***.*************

44. spacer 2.1|1275875|26|NZ_CP029681|CRISPRCasFinder matches to position: 2462532-2462557, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttatgttgggcccccg	Protospacer
**********.********* *****

45. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 68912-68943, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcaaaaagaaattctacagacaatgcaagt	Protospacer
****.***************.***********

46. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 416775-416806, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaggaaattctacagacaatgcaagt	Protospacer
********.***********.***********

47. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 1586899-1586930, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

48. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 1586957-1586988, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

49. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 1587015-1587046, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

50. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 1758992-1759023, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

51. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 2253967-2253998, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

52. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to position: 2576122-2576153, mismatch: 2, identity: 0.938

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
tttcgaaaagaaattctacaggcaatgcaagt	Protospacer
********************..**********

53. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 68900-68924, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacatagagaatttcaaaaagaaa	Protospacer
***** **********.********

54. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1061607-1061631, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgataagaaa	Protospacer
***** ************ ******

55. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to position: 1579746-1579770, mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacacagagaatttcgaaatgaaa	Protospacer
***** ************** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029681_7	7.1\|2150313\|25\|NZ_CP029681\|CRISPRCasFinder	2150313-2150337	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
NZ_CP029681_9	9.2\|2360350\|33\|NZ_CP029681\|CRISPRCasFinder,CRT	2360350-2360382	33	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	26794-26826	2	0.939
NZ_CP029681_9	9.3\|2360419\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360419-2360453	35	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	2846-2880	2	0.943
NZ_CP029681_9	9.3\|2360419\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360419-2360453	35	MK922548	Staphylococcus phage SA46-CTH4, complete genome	3204-3238	2	0.943
NZ_CP029681_9	9.3\|2360419\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360419-2360453	35	MK922547	Staphylococcus phage SA30-CTH2, complete genome	3197-3231	2	0.943
NZ_CP029681_9	9.3\|2360419\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360419-2360453	35	KJ210330	Staphylococcus phage GRCS, complete genome	3491-3525	2	0.943
NZ_CP029681_9	9.3\|2360419\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360419-2360453	35	MK936475	Staphylococcus phage SA03-CTH2, complete genome	14280-14314	2	0.943
NZ_CP029681_9	9.13\|2360350\|34\|NZ_CP029681\|PILER-CR	2360350-2360383	34	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	26794-26827	2	0.941
NZ_CP029681_8	8.7\|2351376\|36\|NZ_CP029681\|PILER-CR	2351376-2351411	36	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	31447-31482	3	0.917
NZ_CP029681_8	8.7\|2351376\|36\|NZ_CP029681\|PILER-CR	2351376-2351411	36	KY653129	Staphylococcus phage IME1365_01, complete genome	11951-11986	3	0.917
NZ_CP029681_9	9.14\|2360419\|36\|NZ_CP029681\|PILER-CR	2360419-2360454	36	MK936475	Staphylococcus phage SA03-CTH2, complete genome	14279-14314	3	0.917
NZ_CP029681_9	9.14\|2360419\|36\|NZ_CP029681\|PILER-CR	2360419-2360454	36	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	2846-2881	3	0.917
NZ_CP029681_9	9.14\|2360419\|36\|NZ_CP029681\|PILER-CR	2360419-2360454	36	MK922548	Staphylococcus phage SA46-CTH4, complete genome	3204-3239	3	0.917
NZ_CP029681_9	9.14\|2360419\|36\|NZ_CP029681\|PILER-CR	2360419-2360454	36	MK922547	Staphylococcus phage SA30-CTH2, complete genome	3197-3232	3	0.917
NZ_CP029681_9	9.14\|2360419\|36\|NZ_CP029681\|PILER-CR	2360419-2360454	36	KJ210330	Staphylococcus phage GRCS, complete genome	3491-3526	3	0.917
NZ_CP029681_8	8.2\|2351375\|37\|NZ_CP029681\|CRT	2351375-2351411	37	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	31446-31482	4	0.892
NZ_CP029681_8	8.2\|2351375\|37\|NZ_CP029681\|CRT	2351375-2351411	37	KY653129	Staphylococcus phage IME1365_01, complete genome	11951-11987	4	0.892
NZ_CP029681_8	8.5\|2351375\|41\|NZ_CP029681\|CRISPRCasFinder	2351375-2351415	41	MF417907	Uncultured Caudovirales phage clone 7F_7, partial genome	31442-31482	6	0.854
NZ_CP029681_8	8.5\|2351375\|41\|NZ_CP029681\|CRISPRCasFinder	2351375-2351415	41	KY653129	Staphylococcus phage IME1365_01, complete genome	11951-11991	6	0.854
NZ_CP029681_9	9.1\|2360279\|35\|NZ_CP029681\|CRISPRCasFinder,CRT	2360279-2360313	35	NZ_CP043848	Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence	50879-50913	6	0.829
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159749-159779	8	0.742
NZ_CP029681_1	1.2\|427530\|31\|NZ_CP029681\|PILER-CR	427530-427560	31	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	10622-10652	8	0.742
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159749-159779	8	0.742
NZ_CP029681_1	1.3\|427519\|31\|NZ_CP029681\|CRISPRCasFinder	427519-427549	31	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	10622-10652	8	0.742
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	MN694790	Marine virus AFVG_250M551, complete genome	33981-34014	8	0.765
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	55978-56011	8	0.765
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	45570-45603	8	0.765
NZ_CP029681_5	5.1\|1592566\|32\|NZ_CP029681\|CRISPRCasFinder	1592566-1592597	32	MN693281	Marine virus AFVG_25M371, complete genome	6448-6479	9	0.719
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	123527-123560	9	0.735
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP028886	Borrelia turcica IST7 plasmid lp32-A, complete sequence	1427-1460	11	0.676
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1264667-1264700	12	0.647
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1264689-1264722	12	0.647
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1264689-1264722	12	0.647
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1264689-1264722	12	0.647
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1264689-1264722	12	0.647
NZ_CP029681_9	9.9\|2360850\|34\|NZ_CP029681\|CRISPRCasFinder,CRT	2360850-2360883	34	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1264689-1264722	12	0.647

1. spacer 7.1|2150313|25|NZ_CP029681|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

caacaaagagaatttcgaaaagaaa	CRISPR spacer
caacaaaaagaatttcgtaaagaaa	Protospacer
*******.********* *******

2. spacer 9.2|2360350|33|NZ_CP029681|CRISPRCasFinder,CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.939

tacaaatgaattaatcagtgacatgaaagatga	CRISPR spacer
tacaaatgaattaatcaatgatatgaaagatga	Protospacer
*****************.***.***********

3. spacer 9.3|2360419|35|NZ_CP029681|CRISPRCasFinder,CRT matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 2, identity: 0.943

cctaaaatatttttattaggtaatgccgttaactt	CRISPR spacer
ccaaaaatatttttattaggtaatgctgttaactt	Protospacer
** ***********************.********

4. spacer 9.3|2360419|35|NZ_CP029681|CRISPRCasFinder,CRT matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 2, identity: 0.943

cctaaaatatttttattaggtaatgccgttaactt	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaactt	Protospacer
***********.**************.********

5. spacer 9.3|2360419|35|NZ_CP029681|CRISPRCasFinder,CRT matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 2, identity: 0.943

cctaaaatatttttattaggtaatgccgttaactt	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaactt	Protospacer
***********.**************.********

6. spacer 9.3|2360419|35|NZ_CP029681|CRISPRCasFinder,CRT matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 2, identity: 0.943

cctaaaatatttttattaggtaatgccgttaactt	CRISPR spacer
ccaaaaatatttttattaggtaatgctgttaactt	Protospacer
** ***********************.********

7. spacer 9.3|2360419|35|NZ_CP029681|CRISPRCasFinder,CRT matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 2, identity: 0.943

cctaaaatatttttattaggtaatgccgttaactt	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaactt	Protospacer
***********.**************.********

8. spacer 9.13|2360350|34|NZ_CP029681|PILER-CR matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.941

tacaaatgaattaatcagtgacatgaaagatgag	CRISPR spacer
tacaaatgaattaatcaatgatatgaaagatgag	Protospacer
*****************.***.************

9. spacer 8.7|2351376|36|NZ_CP029681|PILER-CR matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 3, identity: 0.917

agtggtccagaattaatacatggtaaaggagtatat	CRISPR spacer
cgtggtccagaattaatacatggcaagggagtatat	Protospacer
 **********************.**.*********

10. spacer 8.7|2351376|36|NZ_CP029681|PILER-CR matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 3, identity: 0.917

agtggtccagaattaatacatggtaaaggagtatat	CRISPR spacer
cgtggtccagaattaatacatggcaaaggagtttat	Protospacer
 **********************.******** ***

11. spacer 9.14|2360419|36|NZ_CP029681|PILER-CR matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

cctaaaatatttttattaggtaatgccgttaactta	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaacttt	Protospacer
***********.**************.********

12. spacer 9.14|2360419|36|NZ_CP029681|PILER-CR matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 3, identity: 0.917

cctaaaatatttttattaggtaatgccgttaactta	CRISPR spacer
ccaaaaatatttttattaggtaatgctgttaacttt	Protospacer
** ***********************.********

13. spacer 9.14|2360419|36|NZ_CP029681|PILER-CR matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 3, identity: 0.917

cctaaaatatttttattaggtaatgccgttaactta	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaacttt	Protospacer
***********.**************.********

14. spacer 9.14|2360419|36|NZ_CP029681|PILER-CR matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

cctaaaatatttttattaggtaatgccgttaactta	CRISPR spacer
cctaaaatattcttattaggtaatgctgttaacttt	Protospacer
***********.**************.********

15. spacer 9.14|2360419|36|NZ_CP029681|PILER-CR matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 3, identity: 0.917

cctaaaatatttttattaggtaatgccgttaactta	CRISPR spacer
ccaaaaatatttttattaggtaatgctgttaacttt	Protospacer
** ***********************.********

16. spacer 8.2|2351375|37|NZ_CP029681|CRT matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 4, identity: 0.892

agtggtccagaattaatacatggtaaaggagtatatc	CRISPR spacer
cgtggtccagaattaatacatggcaagggagtatatg	Protospacer
 **********************.**.*********

17. spacer 8.2|2351375|37|NZ_CP029681|CRT matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 4, identity: 0.892

agtggtccagaattaatacatggtaaaggagtatatc	CRISPR spacer
cgtggtccagaattaatacatggcaaaggagtttatg	Protospacer
 **********************.******** ***

18. spacer 8.5|2351375|41|NZ_CP029681|CRISPRCasFinder matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 6, identity: 0.854

agtggtccagaattaatacatggtaaaggagtatatcagtt	CRISPR spacer
cgtggtccagaattaatacatggcaagggagtatatgaata	Protospacer
 **********************.**.********* *.*

19. spacer 8.5|2351375|41|NZ_CP029681|CRISPRCasFinder matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 6, identity: 0.854

agtggtccagaattaatacatggtaaaggagtatatcagtt	CRISPR spacer
cgtggtccagaattaatacatggcaaaggagtttatgaata	Protospacer
 **********************.******** *** *.*

20. spacer 9.1|2360279|35|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.829

accgacgttttattacctattgagcaactattacc	CRISPR spacer
gtaaacgttttattacctatcgagcaactattccc	Protospacer
.. .****************.*********** **

21. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
gcttgacgaaaactcaccttacgataaaatt	Protospacer
. .********* *** ********** .*

22. spacer 1.2|427530|31|NZ_CP029681|PILER-CR matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
tgaagacgaaaaatcagattacgataaatta	Protospacer
 *  ********.**** *********  *.

23. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
gcttgacgaaaactcaccttacgataaaatt	Protospacer
. .********* *** ********** .*

24. spacer 1.3|427519|31|NZ_CP029681|CRISPRCasFinder matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 8, identity: 0.742

agctgacgaaaagtcagcttacgataatgtg	CRISPR spacer
tgaagacgaaaaatcagattacgataaatta	Protospacer
 *  ********.**** *********  *.

25. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to MN694790 (Marine virus AFVG_250M551, complete genome) position: , mismatch: 8, identity: 0.765

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
ctagagtgtaatgaaattatagaaatagaaaatt	Protospacer
 * *..  ******* ******** *********

26. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 8, identity: 0.765

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
accagaaacaatgaacttatagaattagctaaac	Protospacer
*.*.*** .*******************  ** .

27. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 8, identity: 0.765

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
accagaaacaatgaacttatagaattagctaaac	Protospacer
*.*.*** .*******************  ** .

28. spacer 5.1|1592566|32|NZ_CP029681|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 9, identity: 0.719

tttcgaaaagaaattctacaaacaatgcaagt	CRISPR spacer
cacttagaagaaatcctacaaacaatgcaaaa	Protospacer
. .. *.*******.***************.

29. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.735

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
aatagaataaatgaacttgtagaattagtcaaag	Protospacer
* ..**** *********.*********  **

30. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP028886 (Borrelia turcica IST7 plasmid lp32-A, complete sequence) position: , mismatch: 11, identity: 0.676

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
gaaaagaataataaacttaaagaattagaaaaga	Protospacer
.  ...* ****.****** ************

31. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

32. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

33. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

34. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

35. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

36. spacer 9.9|2360850|34|NZ_CP029681|CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 12, identity: 0.647

atcggaattaatgaacttatagaattagaaaatt	CRISPR spacer
tccggagttaatgaacttatagtattccgtctca	Protospacer
 .****.*************** ***  .   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

308799 : 383469

Staphylococcus_phage(94.37%)

head,capsid,protease,transposase,terminase,portal,integrase,tail,holin

attL 320766:320783|attR 390133:390150

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000197643.1\|308799_309543_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917289.1\|309719_310004_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000240642.1\|310079_311696_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_001045085.1\|312229_313537_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000825510.1\|313697_314609_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001792916.1\|314670_315471_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000206621.1\|315888_317112_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000791419.1\|317547_318600_+	bi-component leukocidin LukGH subunit H	A0A2I6PER8	Staphylococcus_phage	2.4e-34	31.8
WP_000595326.1\|318621_319638_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	5.1e-26	29.3
WP_000857198.1\|320756_321794_-\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
320766:320783	attL	NA	NA	NA	NA
WP_000391618.1\|321966_322506_-	type II toxin-antitoxin system PemK/MazF family toxin	U5U4R0	Staphylococcus_phage	9.0e-14	33.1
WP_031806878.1\|322645_322813_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	6.6e-24	100.0
WP_000591749.1\|323016_323358_-	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000759682.1\|323363_324296_-	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_001031454.1\|324311_325025_-	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_001801500.1\|324987_325161_+	hypothetical protein	NA	NA	NA	NA
WP_000854072.1\|325157_325421_+	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001148862.1\|325436_325634_+	hypothetical protein	O80075	Staphylococcus_phage	3.5e-24	87.7
WP_000762521.1\|325620_326001_-	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
WP_001120201.1\|326055_326379_+	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
WP_000048132.1\|326375_326537_+	DUF1270 family protein	A0A2H4PQQ1	Staphylococcus_phage	5.6e-20	98.1
WP_000165371.1\|326631_326934_+	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
WP_000291510.1\|326938_327199_+	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
WP_001205732.1\|327207_327471_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000700555.1\|327479_329423_+	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
WP_000138475.1\|329424_330345_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_071665632.1\|330425_331043_+	MBL fold metallo-hydrolase	A0A0H3U2T4	Staphylococcus_phage	4.1e-87	100.0
WP_000934760.1\|331043_331514_+	single-stranded DNA-binding protein	A0EWX3	Staphylococcus_phage	7.4e-81	99.4
WP_000148322.1\|331543_332437_+	DnaD domain-containing protein	A0A2I6PDG7	Staphylococcus_phage	2.1e-140	99.0
WP_000338530.1\|332443_332662_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
WP_000401960.1\|332670_333075_+	RusA family crossover junction endodeoxyribonuclease	A0EWX6	Staphylococcus_phage	1.9e-72	100.0
WP_000101288.1\|333087_333456_+	hypothetical protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
WP_000131389.1\|333459_333702_+	hypothetical protein	A0A2H4PQJ3	Staphylococcus_phage	6.6e-41	100.0
WP_000982711.1\|333766_334216_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	2.1e-80	99.3
WP_001105598.1\|334212_334722_+	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	3.2e-93	100.0
WP_000197968.1\|334718_335129_+	hypothetical protein	A0A1X9H0B8	Staphylococcus_phage	2.3e-70	100.0
WP_001066443.1\|335602_336139_+	hypothetical protein	A0A0H3U2Z8	Staphylococcus_phage	2.7e-95	99.4
WP_001282074.1\|336175_336421_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
WP_000195803.1\|336417_336624_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
WP_000592207.1\|336620_337007_+	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
WP_000595265.1\|337003_337153_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000265043.1\|337152_337353_+	DUF1514 family protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
WP_000590122.1\|337380_337797_+	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000988336.1\|338028_338328_+	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
WP_000402904.1\|338458_338803_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000625088.1\|338799_340461_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000025274.1\|340476_341664_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000861914.1\|341647_342385_+\|protease	Clp protease ClpP	C8CH20	Staphylococcus_phage	2.3e-129	100.0
WP_000154555.1\|342408_343554_+\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
WP_000238236.1\|343573_343858_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
WP_000150936.1\|343847_344132_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|344115_344478_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000114225.1\|344474_344879_+	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
WP_000565498.1\|344875_345283_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268741.1\|345283_345928_+\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
WP_072050172.1\|345969_346194_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
WP_001096355.1\|346243_346594_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_001795393.1\|346838_351368_+\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
WP_000567408.1\|351364_352849_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_031806961.1\|352864_356647_+	phage minor structural protein	A0A1V0E5H3	Staphylococcus_phage	0.0e+00	99.4
WP_001000058.1\|356639_356792_+	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
WP_001262620.1\|356837_357125_+	hypothetical protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
WP_000340977.1\|357180_357555_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_072353918.1\|357697_357874_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	5.5e-21	94.8
WP_001791821.1\|357926_358034_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|358085_358340_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|358351_359107_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000919350.1\|359297_359789_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
WP_020444758.1\|360315_360774_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
WP_000727651.1\|360868_361318_-	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	2.1e-77	99.3
WP_000702262.1\|361999_362350_+	complement inhibitor SCIN-A	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|362402_362663_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669789.1\|362973_363153_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001792928.1\|364110_365859_+	MAP domain-containing protein	NA	NA	NA	NA
WP_001068523.1\|366483_367770_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000990056.1\|367969_368068_+	hypothetical protein	NA	NA	NA	NA
WP_000681968.1\|368310_368487_+	hypothetical protein	NA	NA	NA	NA
WP_000691584.1\|368745_369126_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000991301.1\|369122_370019_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000645733.1\|370019_370700_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000763048.1\|370696_371569_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_001221651.1\|371568_372309_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000182842.1\|372374_372938_-	thioredoxin family protein	NA	NA	NA	NA
WP_000966288.1\|373058_373583_+	membrane protein	NA	NA	NA	NA
WP_001033971.1\|373642_374200_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000713072.1\|374196_375039_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001188043.1\|375095_376136_-	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000267034.1\|376586_376760_+	hypothetical protein	NA	NA	NA	NA
WP_000706211.1\|377307_378420_+\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	8.7e-11	31.0
WP_000026854.1\|378422_380486_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000514485.1\|380494_380860_+	hypothetical protein	NA	NA	NA	NA
WP_000612780.1\|380888_381299_-	YolD-like family protein	U3PG23	Staphylococcus_phage	1.4e-30	54.2
WP_049308183.1\|381789_383469_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.9e-243	77.4
390133:390150	attR	NA	NA	NA	NA

DBSCAN-SWA_2

466001 : 519650

Staphylococcus_phage(90.48%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020978252.1\|466001_467144_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_000181394.1\|467148_467619_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_001251229.1\|467776_468376_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_000031108.1\|468400_468553_+	hypothetical protein	NA	NA	NA	NA
WP_000901023.1\|469386_469782_+	hypothetical protein	NA	NA	NA	NA
WP_000116231.1\|469977_471363_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000669376.1\|471815_472637_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000437968.1\|472799_473912_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_001045133.1\|473933_474557_+	response regulator transcription factor	NA	NA	NA	NA
WP_000375864.1\|474912_475377_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000992523.1\|475555_476680_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_000290301.1\|476748_477093_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
WP_001802255.1\|477585_477684_+	hypothetical protein	NA	NA	NA	NA
WP_000238230.1\|477974_479171_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_000584638.1\|479160_482097_+	AAA family ATPase	NA	NA	NA	NA
WP_001244175.1\|482093_483035_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_000782127.1\|483155_484118_-	foldase	NA	NA	NA	NA
WP_000477959.1\|484322_484880_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_000648118.1\|485612_485978_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_000004981.1\|486119_486542_-	HIT family protein	NA	NA	NA	NA
WP_000216873.1\|486675_487416_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-24	29.8
WP_000551840.1\|487408_488632_+	ABC transporter permease	NA	NA	NA	NA
WP_000737976.1\|488755_489259_-	signal transduction protein TRAP	NA	NA	NA	NA
WP_001790154.1\|489421_489532_+	hypothetical protein	NA	NA	NA	NA
WP_000233526.1\|489521_490559_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000162881.1\|490616_491540_+	ferrochelatase	NA	NA	NA	NA
WP_000167545.1\|491563_492964_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_000132890.1\|493284_493839_+	serine hydrolase family protein	NA	NA	NA	NA
WP_129409671.1\|495189_495972_+	staphylococcal enterotoxin type O	A0A1X9H080	Staphylococcus_phage	1.4e-31	36.7
WP_000821658.1\|496252_496972_+	staphylococcal enterotoxin type M	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
WP_000713847.1\|497006_497735_+	staphylococcal enterotoxin type I	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
WP_000764689.1\|497888_498659_+	staphylococcal enterotoxin type C1/U	A0A097PAT7	Streptococcus_pyogenes_phage	1.4e-44	43.2
WP_001236364.1\|498697_499453_+	staphylococcal enterotoxin type N	A0A075M4C7	Staphylococcus_phage	1.0e-39	41.0
WP_000736710.1\|499735_500512_+	staphylococcal enterotoxin type G	NA	NA	NA	NA
WP_000848315.1\|501063_501840_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000617704.1\|501860_502097_-	hypothetical protein	NA	NA	NA	NA
WP_001253432.1\|502174_502669_-	hypothetical protein	NA	NA	NA	NA
WP_001792814.1\|503196_503325_-\|transposase	IS3 family transposase	A0A2H4PQU1	Staphylococcus_phage	6.6e-08	66.7
WP_000209099.1\|503502_504291_-	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	1.3e-138	95.0
WP_000473596.1\|505654_506590_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
WP_000782463.1\|506591_507575_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
WP_000543854.1\|507945_508737_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000550252.1\|508741_509215_-	hypothetical protein	NA	NA	NA	NA
WP_000469595.1\|509470_509689_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	1.4e-26	81.9
WP_001092759.1\|510162_510741_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	1.9e-49	59.6
WP_001039432.1\|511704_512412_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	1.6e-127	97.9
WP_001039444.1\|512536_513259_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
WP_001038867.1\|513316_514036_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
WP_001038706.1\|514156_514876_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
WP_011447030.1\|514824_514932_-	hypothetical protein	NA	NA	NA	NA
WP_001038757.1\|515033_515750_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	2.4e-131	99.2
WP_001038713.1\|515900_516620_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.0e-129	98.3
WP_001791797.1\|516684_516819_+	hypothetical protein	NA	NA	NA	NA
WP_001792822.1\|516799_518539_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.8e-287	99.0
WP_000072558.1\|518531_519650_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.6e-39	35.1

DBSCAN-SWA_3

524883 : 556850

Staphylococcus_phage(93.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864139.1\|524883_525441_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	3.1e-78	97.5
WP_000414206.1\|525638_526211_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.6e-24	93.1
WP_000627547.1\|526311_526653_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.9e-55	95.6
WP_000669021.1\|526693_527320_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	1.3e-88	91.3
WP_000070648.1\|527393_528389_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	9.6e-70	94.4
WP_001789021.1\|528469_529120_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	5.2e-56	98.6
WP_072460539.1\|529422_529878_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.0e-79	99.3
WP_000348363.1\|530036_531515_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.5e-284	98.2
WP_000778537.1\|531519_532521_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-188	98.8
WP_000718107.1\|532517_532775_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672015.1\|532840_533314_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.5e-84	99.4
WP_072384924.1\|533318_534065_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	4.4e-144	100.0
WP_000109906.1\|534317_535910_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_000933822.1\|536281_537475_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000366163.1\|537599_538508_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
WP_000453317.1\|538719_539553_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.6
WP_000623477.1\|541550_541904_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	94.9
WP_001200542.1\|541900_542266_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000091445.1\|542521_542824_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|543083_543797_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168907.1\|544236_544872_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001030469.1\|545167_545611_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001153742.1\|545597_546041_-	competence protein ComK	NA	NA	NA	NA
WP_000671052.1\|546153_546624_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
WP_000384171.1\|546822_547047_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|547322_548177_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000989121.1\|548263_549556_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
WP_000221177.1\|549555_549870_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
WP_001261668.1\|550392_551895_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
WP_000384185.1\|552387_553419_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
WP_000493892.1\|553425_554058_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
WP_001159022.1\|554068_555250_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_001008551.1\|555262_555727_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001196354.1\|555848_556850_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7

DBSCAN-SWA_4

697024 : 706064

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005767.1\|697024_698029_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_001019178.1\|698030_699056_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112049.1\|699078_700218_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.6e-84	44.7
WP_001160682.1\|700236_700497_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_000749795.1\|700771_703051_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_000595005.1\|703253_705524_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.4e-63	29.3
WP_000364542.1\|705545_706064_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_5

773844 : 782174

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217246.1\|773844_775662_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0
WP_001283055.1\|775885_776992_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624571.1\|777122_777800_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683933.1\|777802_778903_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_001062177.1\|779016_780363_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000924220.1\|780372_781263_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
WP_001213908.1\|781388_782174_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_6

838003 : 923441

102

Staphylococcus_phage(80.26%)

head,capsid,protease,terminase,portal,integrase,plate,tail,holin,tRNA

attL 838764:838781|attR 884829:884846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000987769.1\|838003_839755_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
838764:838781	attL	NA	NA	NA	NA
WP_001793476.1\|839999_840908_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_110179789.1\|841059_842946_+	hypothetical protein	B5WZK7	Staphylococcus_phage	2.3e-112	95.8
WP_000264750.1\|842988_844194_-\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	2.2e-222	99.8
WP_000191466.1\|844319_844934_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_001795334.1\|844930_845077_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
WP_000705240.1\|845112_845295_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_000511090.1\|845364_846096_-	helix-turn-helix transcriptional regulator	S4SVC5	Staphylococcus_phage	1.3e-132	99.2
WP_000213811.1\|846247_846460_+	helix-turn-helix transcriptional regulator	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
WP_000435357.1\|846507_846951_+	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
WP_110179735.1\|847155_847368_-	uracil-DNA glycosylase	D2JGJ1	Staphylococcus_phage	2.2e-32	98.6
WP_001148860.1\|847437_847635_+	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
WP_000773059.1\|847621_848002_-	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
WP_001025401.1\|848068_848314_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
WP_001128433.1\|848282_848648_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
WP_001097552.1\|848702_848918_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
WP_001124160.1\|848942_849206_+	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
WP_001285954.1\|849218_849380_+	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
WP_000174998.1\|849458_849782_+	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
WP_000985972.1\|849796_850159_+	hypothetical protein	B5WZM2	Staphylococcus_phage	8.3e-56	100.0
WP_110179736.1\|850155_851322_+	DUF2800 domain-containing protein	A0A2I6PEL9	Staphylococcus_phage	7.7e-220	99.0
WP_000645042.1\|851348_851906_+	DUF2815 family protein	A0A2I6PF05	Staphylococcus_phage	1.8e-97	100.0
WP_078064079.1\|851974_853927_+	DNA polymerase	Q4ZCP5	Staphylococcus_virus	0.0e+00	99.5
WP_001164629.1\|853939_854125_+	DUF3113 family protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
WP_031790715.1\|854525_854783_+	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	7.5e-43	98.8
WP_000235324.1\|854785_854986_+	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
WP_000132194.1\|855000_855243_+	hypothetical protein	A0A2I6PEV3	Staphylococcus_phage	1.5e-40	100.0
WP_001065040.1\|855257_855512_+	DUF1024 family protein	B5WZN0	Staphylococcus_phage	5.0e-39	98.8
WP_078064235.1\|855474_855669_+	hypothetical protein	M1SVE4	Staphylococcus_phage	8.2e-26	100.0
WP_001066455.1\|855661_856198_+	hypothetical protein	M1SNY5	Staphylococcus_phage	5.5e-96	100.0
WP_001209216.1\|856234_856408_+	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
WP_000195761.1\|856424_856661_+	DUF1381 domain-containing protein	M1T303	Staphylococcus_phage	9.6e-37	100.0
WP_000483477.1\|856685_856922_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
WP_000592202.1\|856914_857301_+	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
WP_000595269.1\|857297_857450_+	transcriptional activator RinB	A7TWI2	Staphylococcus_phage	1.3e-18	98.0
WP_000265258.1\|857517_857718_+	DUF1514 family protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_000884869.1\|857770_860218_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	0.0e+00	99.9
WP_015978074.1\|860320_860425_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
WP_000665205.1\|860558_860849_+	VRR-NUC domain-containing protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
WP_001795330.1\|860829_862197_+	DEAD/DEAH box helicase	Q4ZCF6	Staphylococcus_virus	4.6e-264	100.0
WP_000513704.1\|862209_862647_+	transcriptional regulator	A0A2K9VBV2	Staphylococcus_phage	6.1e-77	100.0
WP_000166884.1\|862803_863124_+	HNH endonuclease	A0A2K9VBV6	Staphylococcus_phage	1.1e-56	99.1
WP_000778935.1\|863248_863554_+\|terminase	P27 family phage terminase small subunit	U5U414	Staphylococcus_phage	2.9e-49	100.0
WP_000152858.1\|863543_865235_+\|terminase	terminase large subunit	A0A2K9VBQ1	Staphylococcus_phage	0.0e+00	100.0
WP_001100660.1\|865239_866478_+\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	2.0e-234	99.5
WP_000061872.1\|866461_867235_+\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	9.2e-137	100.0
WP_001142739.1\|867246_868410_+\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	9.4e-218	100.0
WP_000050973.1\|868478_868757_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
WP_000395501.1\|868768_869101_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
WP_000110020.1\|869097_869499_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
WP_001023802.1\|869499_869895_+	DUF3168 domain-containing protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
WP_000807536.1\|869929_870571_+\|tail	tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
WP_000169128.1\|870662_871118_+	Ig domain-containing protein	A0A2I6PF45	Staphylococcus_phage	1.3e-77	100.0
WP_000589165.1\|871175_871526_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
WP_000438833.1\|871567_871726_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_110179737.1\|871739_877940_+\|tail	phage tail tape measure protein	A0A2I6PF36	Staphylococcus_phage	0.0e+00	99.2
WP_110179738.1\|877939_878764_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	1.2e-158	99.6
WP_000384474.1\|878772_880356_+	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
WP_031844319.1\|880355_880646_+	hypothetical protein	U5U457	Staphylococcus_phage	2.7e-49	99.0
WP_000429558.1\|880661_882572_+	minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
WP_110179739.1\|882571_884038_+\|plate	BppU family phage baseplate upper protein	A0A2I6PE72	Staphylococcus_phage	6.4e-272	99.4
WP_001166599.1\|884037_884427_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
WP_000916020.1\|884419_884584_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_000466784.1\|884629_884929_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
884829:884846	attR	NA	NA	NA	NA
WP_000339141.1\|885064_885367_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
WP_000909205.1\|885377_886832_+	CHAP domain-containing protein	A0A2I6PF47	Staphylococcus_phage	2.8e-288	99.6
WP_000209712.1\|887553_887769_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0
WP_000476866.1\|887859_888765_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_000476881.1\|888822_889740_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001186912.1\|891120_891666_+	ECF transporter S component	NA	NA	NA	NA
WP_001151997.1\|891771_892020_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
WP_001163809.1\|892127_893081_+	hypothetical protein	NA	NA	NA	NA
WP_000902108.1\|893070_894450_+	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	4.9e-56	33.6
WP_000069294.1\|894602_896063_+	elastin-binding protein EbpS	NA	NA	NA	NA
WP_031824588.1\|896187_896304_+	hypothetical protein	NA	NA	NA	NA
WP_001174266.1\|896464_897451_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_000681752.1\|897565_898534_-	asparaginase	NA	NA	NA	NA
WP_000644387.1\|898610_899270_+	(d)CMP kinase	NA	NA	NA	NA
WP_001789945.1\|899300_899417_+	hypothetical protein	NA	NA	NA	NA
WP_001789944.1\|899533_899725_+	hypothetical protein	NA	NA	NA	NA
WP_000133954.1\|899981_901157_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_000165530.1\|901378_902689_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_000161738.1\|902705_903704_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001043863.1\|903874_904147_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.2e-28	73.3
WP_000450557.1\|904577_905150_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_000774684.1\|905152_905878_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_073392434.1\|905894_906839_+	heptaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	9.6e-11	24.4
WP_000442480.1\|906930_907380_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
WP_000789522.1\|907588_907789_+	hypothetical protein	NA	NA	NA	NA
WP_001269921.1\|908174_909341_+	chorismate synthase	A0A291AU41	Pandoravirus	5.8e-34	31.8
WP_000776310.1\|909366_910431_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000245899.1\|910440_911739_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_072353835.1\|911886_912990_+	hypothetical protein	NA	NA	NA	NA
WP_000005212.1\|913003_913579_+	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
WP_000154685.1\|913568_914156_+	DUF1405 domain-containing protein	NA	NA	NA	NA
WP_001827022.1\|914227_914908_+	zinc metallopeptidase	NA	NA	NA	NA
WP_000839926.1\|915244_915562_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_110179740.1\|915802_916945_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
WP_000361544.1\|916949_918152_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	3.2e-35	42.5
WP_000049919.1\|918138_919110_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_110179741.1\|919133_921827_+	ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	1.8e-46	34.7
WP_000858789.1\|922148_923441_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-54	30.0

DBSCAN-SWA_7

1366497 : 1374970

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238670.1\|1366497_1367064_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1
WP_000030811.1\|1367066_1368095_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_031871549.1\|1368087_1369572_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.2e-45	31.5
WP_000032727.1\|1369550_1371740_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
WP_000666794.1\|1371732_1372404_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000848350.1\|1372405_1372669_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174053.1\|1372668_1373373_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_001010412.1\|1373376_1374501_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861572.1\|1374487_1374970_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_8

1620972 : 1635326

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616840.1\|1620972_1621734_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6
WP_001245577.1\|1621730_1622687_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000876318.1\|1622673_1623645_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_000499195.1\|1623683_1623839_-	hypothetical protein	NA	NA	NA	NA
WP_000562498.1\|1624019_1624991_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000855505.1\|1625108_1627214_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692521.1\|1627176_1627575_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001068487.1\|1628388_1629255_+	DMT family transporter	NA	NA	NA	NA
WP_000930012.1\|1629274_1629775_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_000193751.1\|1630115_1631621_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_031760357.1\|1631698_1631800_-	hypothetical protein	NA	NA	NA	NA
WP_000429008.1\|1631889_1632807_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.8e-07	22.4
WP_000197271.1\|1633430_1633973_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000663030.1\|1634267_1635326_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_9

1647297 : 1655117

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217801.1\|1647297_1648449_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	7.8e-23	35.7
WP_000604514.1\|1648432_1649026_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_000446724.1\|1649376_1650045_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000941340.1\|1650046_1650466_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062972.1\|1650469_1651183_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637687.1\|1651281_1651866_+	hypothetical protein	NA	NA	NA	NA
WP_001093557.1\|1652145_1652586_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001037807.1\|1652927_1653401_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|1653375_1654062_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244415.1\|1654061_1655117_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_10

1989119 : 2005140

Staphylococcus_phage(75.0%)

terminase,integrase,coat

attL 1980147:1980163|attR 2002103:2002119

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1980147:1980163	attL	NA	NA	NA	NA
WP_001035624.1\|1989119_1989674_+	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	1.2e-58	66.7
WP_001670266.1\|1989884_1991024_-	FRG domain-containing protein	NA	NA	NA	NA
WP_031789455.1\|1991010_1991604_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_064140197.1\|1991781_1992351_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.1e-102	99.5
WP_000360838.1\|1992347_1992689_-	hypothetical protein	Q4ZE86	Staphylococcus_phage	7.6e-59	100.0
WP_000771361.1\|1992691_1993219_-\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	6.8e-91	100.0
WP_000214170.1\|1993271_1993925_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	7.6e-116	99.5
WP_001190614.1\|1993955_1994297_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
WP_064140196.1\|1994832_1995474_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	3.1e-114	96.2
WP_000356927.1\|1995470_1995851_-	hypothetical protein	Q4ZE71	Staphylococcus_phage	3.8e-67	96.8
WP_000447454.1\|1996181_1997891_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	0.0e+00	95.4
WP_001002701.1\|1997904_1998774_-	hypothetical protein	Q4ZE74	Staphylococcus_phage	1.0e-163	94.8
WP_001103933.1\|1998840_1999158_-	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.2e-18	48.1
WP_001058488.1\|1999160_1999370_-	hypothetical protein	Q4ZE76	Staphylococcus_phage	5.9e-30	94.2
WP_001147662.1\|1999555_1999816_-	hypothetical protein	NA	NA	NA	NA
WP_000466891.1\|1999817_2000015_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000431539.1\|2000158_2000782_+	helix-turn-helix transcriptional regulator	Q20DG0	Lactobacillus_phage	2.4e-10	42.3
WP_000592973.1\|2000877_2002014_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	9.3e-77	42.5
WP_000424963.1\|2002107_2003649_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
2002103:2002119	attR	NA	NA	NA	NA
WP_000264071.1\|2003673_2005140_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029681

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection