CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029644	Corynebacterium diphtheriae strain BQ11 chromosome, complete genome	3 crisprs	cas1,cas2,DEDDh,csa3,cas3,WYL,cas4,DinG	0	7	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029644_1

39566-40368

orTypeII

Consensus_repeat	Method
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	PILER-CR

12 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP029644_1

>merge|NZ_CP029644|1|39566-40368|CRISPRCasFinder,CRT,PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACGTCACCATACATCGCCTACACCGCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTTCTGCTCGGGCGCCAGCACACGCTGCAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACCCGCATGCGGGTTTTCAGTACATCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTGGATCCGTTCGATGCAAAGCAACCAGTGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCATCCGCTTTCACGAACCCCACATCAAGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTGTCTATCCATTTACCGTCGCCGGTTGCGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACCCGCATGCGGGTTTTCAGTACATCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTCCGCTGTGGAGGAGTCACGTGCGGCTAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGGCAAGTAGTGGTTGAGCACTGGCGGGAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCTTCCCACAGCTCCCCTAGCCATTCCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTATCAAAAAGCTTCACCTTCTCGGTGAGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCGCACCAGCGGGGATGAACCGTAGGAGAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>NZ_CP029644|1|1|39566-40305|CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACGTCACCATACATCGCCTACACCGCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

>NZ_CP029644|1|1|39566-40368|CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACGTCACCATACATCGCCTACACCGCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCGCACCAGCGGGGATGAACCGTAGGA
GAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>NZ_CP029644|1|1|39630-40305|PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029644.1\|WP_003853358.1\|39185_39515_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP029644.1\|WP_070797867.1\|53052_53568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_081338957.1\|42655_44665_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029644.1\|WP_070794736.1\|35029_38284_+\|CRISPR-associated-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
NZ_CP029644.1\|WP_070795183.1\|44661_46191_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029644.1\|WP_044048936.1\|31064_31265_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|273754
NZ_CP029644.1\|WP_014316103.1\|50966_51833_-\|DUF3662-and-FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378850
NZ_CP029644.1\|WP_070794737.1\|33058_33913_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
NZ_CP029644.1\|WP_070797873.1\|27544_29344_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP029644.1\|WP_070794738.1\|32051_33062_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235528
NZ_CP029644.1\|WP_085688818.1\|29992_31081_+\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
NZ_CP029644.1\|WP_070797872.1\|29327_29996_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP029644.1\|WP_014307737.1\|50464_50953_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
NZ_CP029644.1\|WP_070794739.1\|31266_32052_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP029644.1\|WP_003849883.1\|42269_42539_-\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NZ_CP029644.1\|WP_014302674.1\|52346_52646_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_070795184.1\|46203_47664_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP029644.1\|WP_070797869.1\|49010_50465_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP029644.1\|WP_014301108.1\|47660_49010_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP029644.1\|WP_014301100.1\|38287_39202_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NZ_CP029644.1\|WP_003853358.1\|39185_39515_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.12332e-19
NZ_CP029644.1\|WP_081338957.1\|42655_44665_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.17005e-121
NZ_CP029644.1\|WP_070794736.1\|35029_38284_+\|CRISPR-associated-protein	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	2.33293e-122
NZ_CP029644.1\|WP_070795183.1\|44661_46191_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.50994e-107
NZ_CP029644.1\|WP_044048936.1\|31064_31265_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	6.72491e-21
NZ_CP029644.1\|WP_014316103.1\|50966_51833_-\|DUF3662-and-FHA-domain-containing-protein	gnl\|CDD\|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	1.10833e-41
NZ_CP029644.1\|WP_070794737.1\|33058_33913_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	8.07063e-111
NZ_CP029644.1\|WP_070797873.1\|27544_29344_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP029644.1\|WP_070794738.1\|32051_33062_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	0
NZ_CP029644.1\|WP_085688818.1\|29992_31081_+\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.73048e-127
NZ_CP029644.1\|WP_070797872.1\|29327_29996_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	5.55645e-62
NZ_CP029644.1\|WP_014307737.1\|50464_50953_-\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	4.98161e-18
NZ_CP029644.1\|WP_070794739.1\|31266_32052_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	2.10871e-148
NZ_CP029644.1\|WP_003849883.1\|42269_42539_-\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	2.52021e-46
NZ_CP029644.1\|WP_070795184.1\|46203_47664_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.74293e-80
NZ_CP029644.1\|WP_070797869.1\|49010_50465_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.80274e-73
NZ_CP029644.1\|WP_014301108.1\|47660_49010_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	2.78845e-82
NZ_CP029644.1\|WP_014301100.1\|38287_39202_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.16407e-115

>NZ_CP029644.1|WP_003853358.1|39185_39515_+|CRISPR-associated-endonuclease-Cas2
MPKKGSDPVWCVVMFDLPVKTKTQRKQATAFRQNLLDLGFCMAQLSVYVQYLPLAAKLSNLVKLIKEKLPPGGDVRILSVSDIQWSKMIRFSSSAEVSGEEKPDQLAIF
>NZ_CP029644.1|WP_014301100.1|38287_39202_+|type-II-CRISPR-associated-endonuclease-Cas1
MNPGWRVVDLIDFDGKVSYQRGQLAITSDSGELRATLPLAQIAVVLIGNKIIISGAVLVKLSEYDIAVLVCDWRRVPVAGSFSWNEHTRIAARQRAQASLSLPRQKSAWAQIIKAKILGQARTAAQLGFDATDLKNLARAVRSGDVDNREAMAAKRYWEIISTEDDFRRLPGLAATGWNGALDYAYTVLRGHGMRAICSAGLVGTLGVFHHGRGNQFALVDDLIEPFRPAIDYAVFSIVSNAQELDKETKRQLVAAVEEPFNSAGQSIPTVFTAFAQQYGRYVEGDVEKLVPPIWEGPFDAEER
>NZ_CP029644.1|WP_070794736.1|35029_38284_+|CRISPR-associated-protein
MKYHVGIDVGTFSVGLAAIEVDDAGMPIKTLSLVSHIHDSGLDPDKIKSAVTRLASSGIARRTRRLYRRKRRRLQQLDKFIQRQGWPVIELEDYSDPLYPWKVRAELAASYIADEKERGEKLSVALRHIARHRGWRNPYAKVSSLYLPDEPSDAFKAIREEIKRASGQPVPETATVGQMVTLCELGTLKLRGEGGVLSARLQQSDHAREIQEICRMQEIGQELYRKIIDVVFAAESPKGSASSRVGKDPLQPGKNRALKASDAFQRYRIAALIGNLRVRVDGEKRILSVEEKNLVFDHLVNLAPKKEPEWVTIAEILGIDRGQLIGTATMTDDGERAGARPPTHDTNRSIVNSRIAPLVDWWKTASALEQHAMVKALSNAEVDDFDSPEGAKVQAFFADLDDDVHAKLDSLHLPVGRAAYSEDTLVRLTRRMLADGVDLYTARLQEFGIEPSWTPPAPRIGEPVGNPAVDRVLKTVSRWLESATKTWGAPERVIIEHVREGFVTEKRAREMDGDMRRRAARNAKLFQEMQEKLNVQGKPSRADLWRYQSVQRQNCQCAYCGSPITFSNSEMDHIVPRAGQGSTNTRENLVAVCHRCNQSKGNTPFAIWAKNTSIEGVSVKEAVERTRHWVTDTGMRSTDFKKFTKAVVERFQRATMDEEIDARSMESVAWMANELRSRVAQHFASHGTTVRVYRGSLTAEARRASGISGKLEFLDGVGKSRLDRRHHAIDAAVIAFTSDYVAETLAVRSNLKQSQAHRQEAPQWREFTGKDAEHRAAWRVWCQKMEKLSALLTEDLRDDRVVVMSNVRLRLGNGSAHEETIGKLSKVKLGSQLSVSDIDKASSEALWCALTREPDFDPKDGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSIALRGGYAELGSSFHHARVYKITSGKKPAFAMLRVYTIDLLPYRNQDLFSVELKPQTMSMRQAEKKLRDVLATGNAEYLGWLVVDDELVVDTSKIATDQVKAVEAELGTIRRWRVDGFFGDTRLRLRPLQMSKEGIKKESAPELSKIIDRPGWLPAVNKLFSEGNVTVVRRDSLGRVRLESTAHLPVTWKVQ
>NZ_CP029644.1|WP_070794737.1|33058_33913_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTPHILTIAGSDPSGGAGIQADLKSIMAAGGYGMAAITALTAQNTCGVTAIHTPPTEFLSQQLRAISDDITIHAIKIGMIGSAEAATAIATWLDQLHHTPIVVLDPVMVATSGSVLGERHYFEPLLRHATVITPNLPELAVLTNNHDPEQTEHAAHSLAEQYDCAVLLKGGHRHGTNDLGNTWITASGPQFHAPSPRIHTTNTHGTGCSLSSALATRLAIEPPEPALHWATTWLNGAIAHGSDLNVGHGNGPVDHSYRLGEYSANCNTHPKNSRRATFNMAPQL
>NZ_CP029644.1|WP_070794738.1|32051_33062_+|ThiF-family-adenylyltransferase
MLDELERQRVARQLRLPGFGIEQQERLNKGRVLVIGAGGLGSPALQSLAAAGVGSIRLVDNDTVDVSNIQRQILFGVGDVGRSKVHVAAERLRALQPGIRIDARTERLTAHNAHELAEGCDVILDGSDTFATKFLCGDLAEITGIPLVWGSVLQFDGHMGVFTREVGLRDLFPEAPTQGLNCADAGVLGATTAVIANLMATETIKILAGIGTVQPGAVTTYNALTSTFRTYTVGRDPLRPAARTLHTWTLPNEYELIDVREPHEIEHTPSGAHITLPQSMWNDTTAIQHALDNITTDNVVVVCASGIRSAAFIEQFAHLNPHLTFHNVPSGINELP
>NZ_CP029644.1|WP_070794739.1|31266_32052_+|thiazole-synthase
MLTIADRSFQSHLIMGTGGASSFDTLEKSLIASGTELTTVAMRRHAAHTGAHGESVFELMQRLNITPLPNTAGCRTARDAILTAQLAREALDTSWIKVEVIADDTTLLPDVLELIDATETLTNDGFTVLAYTSDDPVVAQRLEDAGAAAVMPLGSPIGTGLGILNPHNIELICSRASVPVLLDAGIGTASDATLAMELGCSGVLLASAINRCINPIAMATAMKHAVEAGRLAREAGRIPRREHAVASSSFEGLASWADEVL
>NZ_CP029644.1|WP_044048936.1|31064_31265_+|sulfur-carrier-protein-ThiS
MNIYINDTPTAIESPQLTDIISNHCNGIRPGIAVAINQRVIPRSQWDTTTVTAGDHLDILTAVQGG
>NZ_CP029644.1|WP_085688818.1|29992_31081_+|glycine-oxidase-ThiO
MKIAVVGGGIVGLSTAFELSTRGYNVHVFDPNPASGASHFAGGMLAPAAEVQFQQDPLFPLMKRAGKLWLDMVRRVAQHTNLPTGYRTEGTLVVAADRADAEHLKQLRATQEAAGMDVRPITTRQARGLEPALGPRLSAAVHIPNDTQVAPRVFLTALLDALDDCGVEVIKEKITDLEPLYQQFEVVVLAAGLGAQHLSPIPLALRPVRGDILRVQTEPGAVNMVVRGWVNDRPIYIIPRANGEIAIGATSREDERDLPSVEGIYDLLRDAIRVVPGIVDSSLIEANVGVRPGTPDDLPYLGWASDRLIISTGYFRHGILLSALGAHVTACLIDGTDPGIDLTACAPDRHHNERGTTHEHLH
>NZ_CP029644.1|WP_070797872.1|29327_29996_+|thiamine-phosphate-synthase
MLPTPRWGRDFDPRCYFVTGTGSVDHIVDVTRQAARAGAGLIQVRSKPIAARDLYILGREVARAVAEVNPGTRVLIDDRVDVALALMNNGEHIHGVHVGQDDLPVRHVRALLGDNAIIGLTTGTLELVRASRQVAEVIDYIGAGPFRPTPTKDSGRVPVGLVGYPPLVAESLVPVVAIGDVRPEDAADLAATGVAGVAIVRALMNSQGVAADVKLVLKGFTE
>NZ_CP029644.1|WP_070797873.1|27544_29344_+|phosphomethylpyrimidine-synthase-ThiC
MSAASANSVTNPSAWENSEIHPKHSYSPIVSGDLEVPETEIQLDDSPTGPNDPVRIYRTRGPECDPTVGLKPLRAQWIDNREDTEEYAGRERNLADDGRSAQRRGAASLEWKGVKPTPRRAKQGKRVTQIHYARQGIITKEMEFVALREHMDPEFVRSEIARGRAIIPNNINHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLRWATRWGADTVMDLSTGDDIHTTREWIIRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTVIEQCEQGVDYMTIHAGVLLAYIPLTTKRVTGIVSRGGSIMAGWCLAHHKESFLYEHFDELCEIFAQYDVAFSLGDGLRPGSVADANDAAQFAELKTIGELARRAWEYDVQVMIEGPGHVPLNMVQENNELEQKWAHDAPFYTLGPLVTDIAPGYDHITSAIGAAHIAMGGTAMLCYVTPKEHLGLPNRDDVKTGVITYKLAAHAADVAKGHPGARAWDDAMSKARFEFRWHDQFALSLDPDTAIAYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRDMFADKIADLGIPQVGGDAEAGMAAKSEEFVAQGSQLYSEVRDNAAHA
>NZ_CP029644.1|WP_003849883.1|42269_42539_-|cell-division-protein-CrgA
MPKSKINHSSTAYTAGSTANRTPVKINSTGTPLWYKIIMFGLILAGLLWLIVNYLAGQDISFMTELGPWNYGIGFGLFIIGLLMTMGWR
>NZ_CP029644.1|WP_081338957.1|42655_44665_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MTDIVLADRYRLGDVIGTGGMSEVYEATDVLLGRKVAVKMLRADLARDVNFRERFRREAQNSGKLNHPAIVAVYDTGETPRAGLNTPYIVMELVNGRTLRDIVREDGPLTPSQAAHTLIPVCHALQVSHDAGIIHRDIKPANVMITNTGAVKIMDFGIARALDDATSAMTQTSAVIGTAQYLSPEQARGKLADARSDVYALGCVLYETLTGKPPFEGETPFAVAYQHVQEDPVKPSEYIADLSPTAAINVDAVVLTAMSKHPGDRYQTAQEMCADLERLERNAVTDAARHYVTPTSFATQDPASTTVVPVTQVTELDHAEAGAGVVPAGAVAGSAAVAGAGGAHAAPRSSNRGLRILAAILAVLVLAVGAGFAIDHFGGGPFSQRSTVTIPKLQNSTQQDAVNQLEKLGLQVNVIEEPNPDIPRGKVIRTNPTDGSNVQRNSTVRLTISSGKEITEVPDLSGKNTADAVKILEAAGLLLDPTVREDSSDTVPKGEIIEVSPAAGSQVSRGSKVSITVSTGVETVRVPVITGMKWDQAEGNLTSLGFKPEVVRVDSVEPAGTVVAVPDEGAEVPKGSRVTVQISNGAMFTVPEITRQTIGDAVRILHDAGWNGNASRLIQAAKVPTVAVTDQNLIASQLPTPGTALRKDAPIEIRLYEFNLAALVPPAQH
>NZ_CP029644.1|WP_070795183.1|44661_46191_-|serine/threonine-protein-kinase
MTQSQSPDPALQALVGSDYALQWVVGNGGMSTVWLADDLRNQREVAIKVLRPEFSDNEEFLSRFRNEALASEHIDSDNVVRTYDYREVTDDMGRTLCFIVMEYVRGESLADMLARKGRLEEDLALDVLEQAAHGLSIIHRMGMVHRDIKPGNLLITQNGQVKITDFGIAKAAAAVPLTRTGMVVGTAQYVSPEQAQGRDVTAATDVYSLGVVGYEMLVGQRPFTGDSSVSVAIAHINQAPPAMPTSVSAPARELIGIALRKDPAHRYADGNELALAVSATRMGQRPPQPKSAPLQHIAPQPAPTESTYALGATAQPTTVIPATGQVPAAPAAAPAAAAAYPASTVIPAGTPRQEPEKQSSGWGAGIVVGALAALLLGTAAWAASQGMFDDLFDKTSQSSESSVPPPPVTATVTETPTPQITTVVPEPLPTSSPEPTPSETKRTPDESHPSSDHQLPSVRPSHNGRPSSQAPHAPHAPTQDADQPAESPAPDTLDSLIENLNKLNQGGAQ
>NZ_CP029644.1|WP_070795184.1|46203_47664_-|penicillin-binding-protein-2
MNRSIRFTSVFALLLILILLVNLTIIQGFSQEKYAHNALNRRGFIELKSQARGQISTGGQVLAESYQDEEGFYQRRYVTNPAIYGPIEGYLSDIYGASGMESNLNGVLSGTDSSVSVRRWTDELLGRKHSGANVELTLLPQVQEVAYNQMANAGYEGAVVAIKPSTGEILAIASTPSYDPSAIVNPDTAEQTWAALNADPGNPLLNHATQETLPPGSTFKVITTAAGLNAGYGPGSMLTGQDRITLPDGITTLENYAGQTCAGSQNVTLATAFQYSCNTAFVQMGIDVGQKKFDEAAHAFGVNDRYDLGVDMAPGTIGDVSDPSARGQSSIGQRDVAMSVLHNAVVAATVANGGKRMEPHLVSRIVGQDLKVIKETKPHQINEAVTPEVAATLTDLMRLSERHTAGYTGADIASKTGTAEHGEDSRNSNPHAWYIAFGPSANADVAVAVVVKNGGDAGQAATGGSVAAPIGRAVIAAAQAALAARG
>NZ_CP029644.1|WP_014301108.1|47660_49010_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MTFLRRITARPVEFGLLVMATLLIAVTLINLNMAQGLSVTSETLWVIGGFIGVFTIAHLALCFTAPHADQVMLPVASVLNGLGLVMVYRIDLARDTALASRQVIWTLVGILLMIAVLVFIRDHRMLSRYSYVLGLLGLILLALPMVWPTKMNADANIWISIGPFSVQPGEFSKILLLIFFAQLLVNKRALFNVAGYRFLGLEFPRLRDLGPILGVWAFAILVMAGENDFGPALLLFSTVLGMLYLATNRVSWLIIGAALVAVGGTALYQISSKIQSRVTNFINPLDNFNGTGYQLSQSLFGLSSGGVAGAGLGLGHPELIPVAESDFILAAVGEELGFIGLAAVLVLFAIFITRGLRTALRARDSYGKLMAAGLSLTLAIQVFVVTAGITALMPMTGLTTPFMSQGGSSLMANYILLGLILRISHSTQAAANDVVSMDEQAARGQEAHR
>NZ_CP029644.1|WP_070797869.1|49010_50465_-|serine/threonine-protein-phosphatase
MLRLNYAAASDRGLVRGNNEDSAYAGPHLIALADGMGGHAAGEVASQLMINHLMRLDADADDNDMLALLASVADDANRAIAQGVRDVPETDGMGTTLTALMFNGADLAMCHVGDSRGYRLRDGALEQITVDDTYVQSLVDKGQLAPEDVSTHPQRSMILKAYTGRPVEPTLKMIDIRPGDRFLLCSDGLSDPVTHSTIETTLQQGTPQEAARRLVDLALRSGGPDNVTVVVADVVEADGSDKSAAAASLPVTPLTVGALNSGMPEDPRPDTAAGRAAMAIAQRQPQVILPDPEPVKEATPSPRRRMVAVISALVVLAVLISAGWWGSSMVKNNYYVTTADSDSAQGALVIENGIDVSLLGKSLHSTYQFACLSPEGDLTFVDSADAEKSCHRFRLSDLKESARGQVSTLPDGSYDEVQQQLQRLAEQTLPACITRQAAHPKDKDKKKPAAPSSAAPTTTKAASPSSTGSPDDLSTPGETCREVK
>NZ_CP029644.1|WP_014307737.1|50464_50953_-|FHA-domain-containing-protein
MESVIVFLLRIALLVLLWLLILLALYIQRKDAKSAAQTTVAPQAVTGLGVSSASSPLKKVSRRGGAPQQIVVVEGPLTGSSMQLDSLTEITLGRSKDCDFVVGDDYASARHARLIKRGSEWFAEDLDSRNGTYVGGYRIDQPEKVSAGSDIKIGRTTVRLVA
>NZ_CP029644.1|WP_014316103.1|50966_51833_-|DUF3662-and-FHA-domain-containing-protein
MSIMGKVAKLDSAMQRGLDNSFAFVFGGKLVPAEIEELLKQEVQDNIVRAYEGGVESPNVFRVRVSRKDAQNLAQRYPSLADDFADRLSRYTRNQGWSTEGPVVVTIAADSGLRTGQLHASSVFDPAPQEYSRFIGVEDDVAAAAPTNDESNYESESGMNSYDADPRTEYMTAQAPDAIYTEVPVPEPKATPTVSLLLQDGSSRTYLVEEGSNIIGRSNEAHFRLPDTGVSRQHAEITWNGRDAILTDLKSTNGTTVNDTPVENWLLEDGDVITVGHSHIEVRIVEPN
>NZ_CP029644.1|WP_014302674.1|52346_52646_-|hypothetical-protein
MKEKKLSSLVFGNVILESQILGTTIRIYADDMRSYSFRPSPYASLSVPLNELKGQLQPDHAEALAKKVFDSVAEELNKNYPGGCERAEKELKAWLMHTN
>NZ_CP029644.1|WP_070797867.1|53052_53568_-|hypothetical-protein
MTSQIKERFYDFAISNGNPHSRWRNPRSTRLLITGYFTSLTLALIFELLMFAWIHFIWLFIACMFIAMTCWTVLRSTIDLKDMAPEDRLDDYEKAVINQWRQRSLSTALSLLFIGGLAAIIASASFIATDSPLSPNLLAIFAGLYMIYTYIFASSLPAVGYALTFNRNPEE

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Crispr_ID: NZ_CP029644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029644_2

697850-697927

Orphan

Consensus_repeat	Method
GGTAAGAGTGTCAAAATGACACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029644_2

>merge|NZ_CP029644|2|697850-697927|CRISPRCasFinder
GGTAAGAGTGTCAAAATGACACCCTTACCCGACAAAACCAAAACCGCAGGTCAGGCTAAGAGTGTCAAAATGACACCC

>NZ_CP029644|2|2|697850-697927|CRISPRCasFinder
GGTAAGAGTGTCAAAATGACACCC	TTACCCGACAAAACCAAAACCGCAGGTCAG
GCTAAGAGTGTCAAAATGACACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029644.1\|WP_014317683.1\|692898_693402_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_162565065.1\|700662_701445_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_110217514.1\|699433_700657_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP029644.1\|WP_014308092.1\|689613_691005_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|378392
NZ_CP029644.1\|WP_110217518.1\|704854_705469_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_162565064.1\|697125_697332_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP029644.1\|WP_014308091.1\|689095_689617_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_CP029644.1\|WP_110217820.1\|696711_697044_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|285830
NZ_CP029644.1\|WP_110217819.1\|691097_692138_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_CP029644.1\|WP_110217511.1\|693574_696538_+\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|234609
NZ_CP029644.1\|WP_101688088.1\|704165_704465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_014308090.1\|686170_688222_+\|ATP-dependent-DNA-helicase-UvrD2	unknown	unknown	gnl\|CDD\|223288
NZ_CP029644.1\|WP_083310573.1\|704553_704739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_070644237.1\|698830_699214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376791
NZ_CP029644.1\|WP_110217519.1\|705475_706396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_110217509.1\|688166_689060_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274832
NZ_CP029644.1\|WP_110217520.1\|706395_708249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP029644.1\|WP_110217510.1\|692149_692848_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_110217517.1\|703504_704140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029644.1\|WP_162565066.1\|701480_703499_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|380149

Protein	Function_ID	Function_description	E-value
NZ_CP029644.1\|WP_110217514.1\|699433_700657_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	6.5878e-08
NZ_CP029644.1\|WP_014308092.1\|689613_691005_-\|zinc-dependent-metalloprotease	gnl\|CDD\|378392	pfam10103, Zincin_2, Zincin-like metallopeptidase. This family of proteins has a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold. The structure of this family has similarity to Peptidase_M1 (pfam01433, Structure 3CMN).	1.17132e-147
NZ_CP029644.1\|WP_162565064.1\|697125_697332_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.17125e-08
NZ_CP029644.1\|WP_014308091.1\|689095_689617_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	5.31216e-18
NZ_CP029644.1\|WP_110217820.1\|696711_697044_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|285830	pfam08667, BetR, BetR domain. This family includes an N-terminal helix-turn-helix domain.	2.41218e-06
NZ_CP029644.1\|WP_110217819.1\|691097_692138_+\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	9.80128e-87
NZ_CP029644.1\|WP_110217511.1\|693574_696538_+\|UPF0182-family-protein	gnl\|CDD\|234609	PRK00068, PRK00068, hypothetical protein; Validated.	0
NZ_CP029644.1\|WP_014308090.1\|686170_688222_+\|ATP-dependent-DNA-helicase-UvrD2	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.57722e-122
NZ_CP029644.1\|WP_070644237.1\|698830_699214_+\|hypothetical-protein	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	0.000161843
NZ_CP029644.1\|WP_110217509.1\|688166_689060_-\|hypothetical-protein	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	0.00875072
NZ_CP029644.1\|WP_110217520.1\|706395_708249_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	3.16489e-11
NZ_CP029644.1\|WP_162565066.1\|701480_703499_+\|cutinase-family-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	6.28303e-08

>NZ_CP029644.1|WP_162565064.1|697125_697332_+|helix-turn-helix-domain-containing-protein
MNERDTHKMDEPEWLSSGEASALLPSVTRRTVQAWASKGQFPNAIQLPSGQWRIPRKDVEAILGDAAQ
>NZ_CP029644.1|WP_110217820.1|696711_697044_-|helix-turn-helix-domain-containing-protein
MTAKSIQTSYTADEAIGITVNQLMFTHRVTRKMLGDALGISGQTLGRKVRGQISWSLAEIFAIAAYFNIEVADLLPRRVAQTQETPGSLSRTEGSNLVAGAGFEPTTSGL
>NZ_CP029644.1|WP_110217511.1|693574_696538_+|UPF0182-family-protein
MATGFTRPAAAPKRPQRRLTWLIPLLMILGALVPTVVGLYTDWLWFGEVDFRGVFNKVIATRIGLFVGFGLLAGIVTFLAGWFTYRGRPDELEFFDPDSPVVQYRAAVEKGVHRFLVVLPVVIGIAAGFLGQQAWQTVQLFFNRQDFGVSDQQFGMDYGFYAFTLPALRLVVSTFSVLLVIAFLIALVGHYLLGGIRAGNQAAGVKGSITNYAKVQLAVTGGLYLLVRMASYWLDRYSLLNNSHETFTGGSYTDINAVLPAKIVLLVISAVVAISFFSVIVTKDLRIPAISTVLMIVSSLAIGNAWPIMMERFSVSPNRAEKESEYISRNIEATRYAYGITDDAVTYKDNWGAKGASSEKVASDSATVSNIRLLDPEIISPTFTQQQQLRNFYGFPKSLAMDRYVIDGELRDFVVAARELDPNALKENQRDWINRHTVYTHGNGIVAAQANQVDEVARDVGSARGGYPVYTVSDLQTTDKEAQELGIVVKEPRIYYGPVIASATDGADYAVVGSENDSSVEYDTDSSTYIYQGKGGVNIGNVINRAAFAMRYQELNLILSDRVNGNSKILYDRDPRERVHNVAPWLTTDSTTYPAVIDGRVKWIVDGYTTLTSLPYAERTSLSEATNDTTAQVGNSAQRLVTDNVGYIRNSVKAVVDSYDGSVDLYEFDENDPVLKAWKGVFPGTVKAKSEISEELMNHLRYPEDMFKVQRKMLARYHVDDARDFFTNDRFWSVPSDPSATEGQKDVAQPAYYVVAADPDTGKPSFQLITPFRGLQREYLAAHMSVSSDPDNYGKITVRVLPTDTLTQGPKQAQDTMMSSDQIASDRTLWKDTNDLFNGNLLTLPVGDGDILYVEPLYSQRKNQASAFPKLLRVLVSYQGKVGYAPTIAEALSQVGIDPKEAQDLGEAKGLKPESQNRDKPEDKEGKAPSTPSAPASGSGTTGEAIGKINDALNKLQSAKNGSNEEYGRALDELDKAVEEYRKVAGQ
>NZ_CP029644.1|WP_014317683.1|692898_693402_-|hypothetical-protein
MSGMQYPPQALNKAMLEAVDFIHAEGWNAPPTLFALVPAELIGQALPDDDDSPLALVVQDNLPEHIRPGSEELGDYVSRISWPEQVVGAVLAQEIMFRDSSADSDEARPARLFSGVLRGDADLTLLQIRPTEEELTERGPFAEDDIELRGGPSVAPGVIAALRATLD
>NZ_CP029644.1|WP_110217510.1|692149_692848_-|hypothetical-protein
MSFVPFGFAAVQRSSVVRCFSACVVVVAISGVSACSRDTPEAPQSTSATSSAAPSTTSASTTAPSSASASSITQTSKVSSQAEAPTSVPPMLDSKHKNVQRAFEQFGALAPESLFAQFDTCDANGVQNSMACSGHDVGQFQFFKSDAKAASTTQLLTELRSSRVIEDTGRRVVGWSTLGGTAVITVVDNDNGLVMQQMVSTDEVDPAEHIYELGLAQAPKKESAAEPTPSSK
>NZ_CP029644.1|WP_110217819.1|691097_692138_+|PDZ-domain-containing-protein
MNTLVLGAIPVVALASLVTLDHIPGTDIDLTVPYAAEGPGPTVNTLGDVDGKPVVNVSGAEIHKTTGNLNMTTVSVRTHLTLGQALGRWLIAHDTLVPIEQIFPQGKTPEEVDEVNKAAFSTSEASATIAAMNQLHKPVDTVVAHISPEAPAAKVMAEGDVITQVAGAKATGPSQVRDSVRAKKPGETISIGFLRDGKQLTREVTLGTHPEDDKVAFLGVSMTARPADGITVDYNLEDIGGPSAGLIFSLAVVDKLSPDEINGGKFVAGTGTIDDDGTVGPIGGIRHKVRAARDAGAEVFLSPEKNCSEALKGKPGDMVVISVDSLSDAIHQLDNFKAGKEVKTCS
>NZ_CP029644.1|WP_014308092.1|689613_691005_-|zinc-dependent-metalloprotease
MNSNGFGFSFNFGGRGDDDDNSRDSNPFGSGGLGDMLNQFGQMLSGMGSSMNSPEGQGAVNYALAERIARQQIESAKAPAATEADTKAVTEAVNLVELWLDDATILPTASNKVEAWSANDWLTNTLPMWKRMVTPVAEHMAQAQLDSLPEEAREMVGPMMQMMNQMSGMNFGMQLGHALGDLATQTLSGTDFGVPIAPAGVTALMINNVRKETQGLKIEQREVLVYLAAREAARQRLLRHVPWLAEQIVASVEEYAAGLVIDTSHIEEAMREMNLESGDPAAIHEAMERMQNLDMSPRITSRNANAVSRLETLLALIEGWVEHVVTEAMGSRVPSTAALNEAWRRRRATGGSAEKAFAQVVGIEFGAPKVAEAQELWRRVDVAVGMEKRDHVWDHPDFLPVAEDLDNSAEFIDGLLDTASADEFDPIAEITKLEEMLSQQSEEQQKEQRENPSDPDEDSPKND
>NZ_CP029644.1|WP_014308091.1|689095_689617_+|M48-family-metallopeptidase
MSKRTTPTYPVEVIRSDRRTRTVSARLVGGKILIRIPASMSKKDEKKFVAEMVNKVRTKTQSSAPTDEALLHRAQHLNRTVLENRATIGSIRWVTNQTRRWGSCSQTTNDIRISHRLQGVPDYVLDAVIIHEMVHTFIEGGHSPEFWQWADKAPKAERAKGYLEAWQRMGDVG
>NZ_CP029644.1|WP_110217509.1|688166_689060_-|hypothetical-protein
MNQGGLISLSPHAQVLLRAEGIQFGLDSANAGIFAAPESLIVAIVQVLRGFWQPIAKTTAIEQLTEAGLQPVAARGLIDDLLHHRVLSIVERNLTVAVGGFGPLVAPIKAVLGCAGISVVQAHTIQRCMTLESLLSREVPLIWINSTPSFSHIAQELVEVKTMIPVGLMDNHAIIGPVRIDGRGPCGLCTDLYRSDADPQWPALLKNATAPLTAPAALTYATAARVTRLVEQLSEPRQRVTVTAGLVIRVSPDGELSSEIMSPHSRCPLCWSSRWDCDPLTGTEQAFLADLGQNVLL
>NZ_CP029644.1|WP_014308090.1|686170_688222_+|ATP-dependent-DNA-helicase-UvrD2
MINLDDLDDDQRAAAEAPRGPVAILAGAGTGKTRTITYRIAHLIDRGMASPHRVLAVTFTRRAAGEMRHRLGLMGVGGVQAQTFHSAALRQLRYFWPQVAGNLPWRIVDNKFSLVGRATRSVGVESSTENVRDLLSEIEWAKAALITPDNYVERLNGRKTPVAAEKVAEVYRRYEQSKTTPEGMLLDFDDLLLHTAGAIENSAAIAEEFRQQYRTFVVDEYQDVTPLQQRVLDAWLGERDDLTVVGDANQTIYSFTGASPDYLLGFSRKYPHATVVKLQRDYRSTPQITDLANRVIDQAVGRIAGTRLELEGMRTAGPQPEFQEFSDEPAEAHAVALKIKQLLTQGVPASEIAILYRINAQSATFEQALDDAGIVYQVRGGEEFFQRSEIKQAMSEIIRATQRDDLPDARGVDLERIVRAILAPLGLSKHEPEGARARERWQSLEALAELSLEIGQATPDLNLQGLLAALNQRASAKHPPTMQGVTLASLHAAKGLEWDAVFLVGLVDGTLPISHAMKAGDHAIEEERRLFYVGVTRAREILYCSWAKARQEGGRATRKRTRFLDSIVPELDVSSVPPRTKRRQRCRVCGTTLNSPAERIVGRCDQCPSGVDGEVFETLRKWRAETARELNVPAYIVFTDATLHAIAENLPQSAEELMQISGIGQVKVERFGPGLLETLAQFQ
>NZ_CP029644.1|WP_070644237.1|698830_699214_+|hypothetical-protein
MDLRVTPGELEELRLIRAVHAALADGLCATGDASPHLWDAAVAGEPRKAVERRYAQAIAICEQCPVRQLCHGLAEALPETSGVWGGEVYEDPTKRAYQSRKTVDGKQRKARLRLKVLVRQRVACDVT
>NZ_CP029644.1|WP_110217514.1|699433_700657_+|hypothetical-protein
MKFGIRVGGLAAGIAAGALLGAPLAMAAPTADDAPVQPGTATAAPAAPKPGTEDAAAEPSSQPGTETEAPVEQTQPGTATETADSESEDAETTTNEPQTQPGTETPTAEEESQASATETEGDQQSQPGTVTESATQQEVPVEQTQPGTATEAPDSEPEAAAATTDEPAEATPPAAPTATSQASNETPSVPASTDSTPVEQPTVEQANTASSQKETPATTPAAENEQSEQPSATAQEAPAGTPAPQATNEKVRKTDTLTGKLTVDAPEHKSEFDATVDRQWNLQKASLTTTDNTITVDIPAGHAAVSTPKVAVEVSTNGNIAETGQQAVAKHVERGQAAIDKVTPQPVKDAQAAVAKAQQQVNDTVTQVREEAFDAAAEQAPASAQVTVEDTTVTGSYDADTSDSPEV
>NZ_CP029644.1|WP_162565065.1|700662_701445_+|hypothetical-protein
MGSQSWFDQAAARRQEREAKEEAADTVDSANDVDAEATSLHSVQSESSAQSRALPPTPQKPDLRTRLLAKPKTGAATAGTKNTSASSKTMVTLMICAVMLGIGLVGAATALVLMTKDDEPAPVAVPAETPVAPPAPVGYAGQCEDASGKTPIAGGTKDLRSAVVAFEKAYYGQDTDALMETVAQDSGLAETDWETVLPEAAPEGTTWCVTIQPTKPQAKSVDIDLTVTDPNGEETMYRQRVSGKTVPGTQQWRLTKIESR
>NZ_CP029644.1|WP_162565066.1|701480_703499_+|cutinase-family-protein
MKRRIPPIVAGLSATVLVTTALPPVALADPEVTVSKNNVAQADKCPAMQLVIINSSFDSVGDENTDTGFFSDVSNKVMDANGGKVEDPSAGFADSDSTATEPTTDDSSDSLWGNPEDSSASSASAADSSSDDLWGDPSSETSSQTSDASDDEPSSESSSPAELDNEPESTGESDSETSTQSEESSDSSESSSESSASSSSTMESVADNPQKVGRIYINFDEQGEGYIPGVNGEEKKEYSEAVSAAVDKVNETLGEIQSSCPDTRVMLLGYSEGAQVANIVSKQIGSGQSNFPSDKVSGVALFSDPSRGESQPMVGNGAQAPAAAPETSGENTTKLADTLTTNDTNVAPEGAGVATLTDAAGGQGATGESTDSATGTTSGSSTGGFGALSDRVMSFCIEGDSTCAIPEGSPLRKIIASGAQSIDLNDPQKSLMAIADTLGPAVVLGGVESLADDLSFGPQGFQLARAENTDDTMIAKIADEADRPHDIGEMGQRLIQSGLKLGGMGLAAGITFAKDVVTPANLAQIAAAGAADPFAAIPVVATKLASAALNIVTPATATGVALRVFDEIKAAGLGDEQIADVATQAATWKSMGAGAYQTTPVTEDGRSATDLTADWARAAVGDASGTSMPTLSEAVSGIGETAGALTGLAGGTGGIPAFDPGAIGNALQLIGG
>NZ_CP029644.1|WP_110217517.1|703504_704140_+|hypothetical-protein
MGAVAITSGADDFRQVFLREDSMLPIDVQVSGDDNGDQPAPAVWLVGAHGGAGVSTLSHILAPMGDAGQAWPAGVENPYCVLVCRSTKVGLERAHQAALQARAGQAGDVMLLGIAIVADAPGKMPKALARKIGVIEQHFRIWRIPYLDAIRVTDMDELAVWEPGYELPERKKRSRRKTPPITDVPAVEVITVAEAIFDSALEAHELAESAT
>NZ_CP029644.1|WP_101688088.1|704165_704465_+|hypothetical-protein
MIDHVGALYDASTVLLAQMPGQNLSPQAPGDFGAKFDRGLNFAQYIGIGVAIIGVIVAGASMALSRREGTSEEATGMALRIGIGATLIGGASSLIAAFL
>NZ_CP029644.1|WP_083310573.1|704553_704739_+|hypothetical-protein
MTLYVTLAGAVVAVIIFGAMLALDRNRGEPVSATSPTVRAFRIALGVMVMTSALTLAQWFT
>NZ_CP029644.1|WP_110217518.1|704854_705469_+|hypothetical-protein
MKKMTSLLLAATAAAGALVGCSNDEEATAGHEQWDTTVAPKNVSWSDAQTRGIKVPSSKDDGPKNTDPVPHGWAPSPQGAVLAAINGQVYMSTAGEEVWPEVSKWMLAPGQGRDQWAQARSLMDIDGDVKNPPQFKGFKFSEFSNDKAVVVIVAEYPHHGRLGYPVQLDRSSGDWRIVVPPQGQEPDLVGVKDAEFESFVKFEG
>NZ_CP029644.1|WP_110217519.1|705475_706396_+|hypothetical-protein
MSKSTKTLAVLVSITIALVAIVVGGYMALTGTNDTQSAESPTSPSSKEKSTRNNPNDKQFPDGNTPGASVDGNQRSWPDVLDGDIDAQFATPGQYATEPVSSRRVFTPRNPLGDLPAASALVDQPDACENTDLAGKTQLQYVKARFLAVNTEAGPSRMERAVPRGYAHSPQGAVMAAINQLGYGLPAQGDEVGEEIDKALWADSAQVAQERAEKNLDTEGPSRLARASTMPGATGYKIISCGGDLMVVDVVYGEPTPGRPETAMAARMSLRWTNNDWVVDLSGSNDAAISRPAPESLDGYTLVDYQ
>NZ_CP029644.1|WP_110217520.1|706395_708249_+|hypothetical-protein
MSLRKFSEVLLVVVLALLAGAGNAAAADDEKSTGDEAYEECISRSYDEAATRQLVKDGTVDLEKYVEDGQKFNAQANPDVIEKIKKDHPEEYRRLAEHYEKDQSLGSKGGRTVNSAACNMKKPLDTAVKAAGEYWEDPVGKFVQALIEGNAEVLQLTMTFWFDFSTAQTRNVDANIQGVKNIVAGLAAMALICSFIIGGYRIAASRRMGLQDGVEETAGVVVKYIVFSFGVVAAVPGALIATDVLANKIMENFGVTDPNQVVDLAALDESMGGPVILMILAIVSLLGGLMQILALVVRTLILPIVVGLTPLAAASSFSETGRNMLNNLVAYMIAAVAYKPLAALLYAVVMWNASQPAEGDVLTAAVNVLMIALAGFCAPALVRVIAPMTAQAGGGGAAPLAQAAGAGVAGALGAGAMLASGGSSALAASAAKGAAGASAAGGSPAPSAAGAPVSSTGRAPKAGSSGGSGAAPARDTTPSGSTGSSRASSVASGGSRSAPTASGGSASPAGSGQSSVGGGQPTAAAATSSGQSGAAARTQTNRGFGQRMGAFAAGTSRAATRAATVTERIGAAGLSGTASAMKVGAAAARGAAQGASHTQRVLDDSIGVSGFAGGRHQ

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Crispr_ID: NZ_CP029644_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029644_3

1572002-1572114

Orphan

Consensus_repeat	Method
GCTGGTTTAGGAGCCGCAGGCTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029644_3

>merge|NZ_CP029644|3|1572002-1572114|CRISPRCasFinder
GCTGGCTTTGGAACCGGCTTCTTTTCTGCTGCTGGCTTAGGCGCAGCTGGTTTAGGAGCCGCAGGCTTAGCCGGTTGTTGCGGAGTTGCTGCTGGCTTAGGCGCTGCAGGTTT

>NZ_CP029644|3|3|1572002-1572114|CRISPRCasFinder
GCTGGCTTTGGAACCGGCTTCTT	TTCTGCTGCTGGCTTAGGCGCA
GCTGGTTTAGGAGCCGCAGGCTT	AGCCGGTTGTTGCGGAGTTGCT
GCTGGCTTAGGCGCTGCAGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029644.1\|WP_110217711.1\|1562256_1563216_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NZ_CP029644.1\|WP_014303549.1\|1579004_1580351_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234583
NZ_CP029644.1\|WP_010935090.1\|1565146_1565839_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP029644.1\|WP_014302048.1\|1559356_1561624_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_CP029644.1\|WP_014303544.1\|1572449_1572782_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP029644.1\|WP_014302055.1\|1568876_1569320_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP029644.1\|WP_014303547.1\|1575626_1577384_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP029644.1\|WP_041740521.1\|1581498_1582008_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|376440
NZ_CP029644.1\|WP_014303550.1\|1578181_1579006_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP029644.1\|WP_110217712.1\|1566688_1568008_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP029644.1\|WP_014303551.1\|1580354_1581479_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP029644.1\|WP_081337343.1\|1563253_1564225_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP029644.1\|WP_014303546.1\|1574639_1575548_+\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_CP029644.1\|WP_070794665.1\|1558430_1559177_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP029644.1\|WP_014317952.1\|1564247_1565150_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP029644.1\|WP_014302052.1\|1565835_1566642_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_CP029644.1\|WP_003851911.1\|1561815_1562085_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP029644.1\|WP_014303548.1\|1577415_1578162_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP029644.1\|WP_014303545.1\|1573038_1574037_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP029644.1\|WP_010935095.1\|1574033_1574588_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627

Protein	Function_ID	Function_description	E-value
NZ_CP029644.1\|WP_110217711.1\|1562256_1563216_-\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	1.62088e-130
NZ_CP029644.1\|WP_014303549.1\|1579004_1580351_+\|hypothetical-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	7.92914e-151
NZ_CP029644.1\|WP_010935090.1\|1565146_1565839_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	2.47862e-55
NZ_CP029644.1\|WP_014302048.1\|1559356_1561624_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP029644.1\|WP_014303544.1\|1572449_1572782_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	5.85509e-20
NZ_CP029644.1\|WP_014302055.1\|1568876_1569320_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	3.00142e-41
NZ_CP029644.1\|WP_014303547.1\|1575626_1577384_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP029644.1\|WP_041740521.1\|1581498_1582008_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|376440	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain. This domain is a 3 helical bundle.	3.92582e-35
NZ_CP029644.1\|WP_014303550.1\|1578181_1579006_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	6.89915e-104
NZ_CP029644.1\|WP_110217712.1\|1566688_1568008_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.47241e-95
NZ_CP029644.1\|WP_014303551.1\|1580354_1581479_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	7.95084e-103
NZ_CP029644.1\|WP_081337343.1\|1563253_1564225_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.13342e-141
NZ_CP029644.1\|WP_014303546.1\|1574639_1575548_+\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	8.4578e-08
NZ_CP029644.1\|WP_070794665.1\|1558430_1559177_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.47183e-94
NZ_CP029644.1\|WP_014317952.1\|1564247_1565150_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.27507e-178
NZ_CP029644.1\|WP_014302052.1\|1565835_1566642_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	4.25108e-19
NZ_CP029644.1\|WP_003851911.1\|1561815_1562085_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.46579e-51
NZ_CP029644.1\|WP_014303548.1\|1577415_1578162_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	5.74425e-78
NZ_CP029644.1\|WP_014303545.1\|1573038_1574037_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	5.47998e-171
NZ_CP029644.1\|WP_010935095.1\|1574033_1574588_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	3.05092e-39

>NZ_CP029644.1|WP_014302055.1|1568876_1569320_-|30S-ribosome-binding-factor-RbfA
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTIDDQPDLKAAAEALQRARGQLRKIVGDQLSVRFTPTLSFELDTVPEASAHMEDLLARARARDLELAELKKNAQPAGDAHPYKDDDAMND
>NZ_CP029644.1|WP_110217712.1|1566688_1568008_-|MATE-family-efflux-transporter
MNTSLNDTADRSAHITAVTVLALALPSLGVLAATPLYLLLDTAVVGGLGTIALAALGAGTVIYSQVTTQLTFLSYGTTARSARLYGAGKQGEAVYEGVQATWIALLVGAVLATILFFGAPTFAWWLTGNREVANNAGHWLRITAFGVPMILAIMAGNGWLRGIQNTRAPLVFTLAGVIPGACAVPFFVHWWGLVGSAWANLMGTSITAVLFVGCLARYHRGSWRPQWRIMKTQLVLGRDLILRSFSFQVSFLSAAAVAGRFGAESLAAHQVLMQLWGFLTLVLDSLAIAGQTLTGAALGAGSAAVARAVGEKSIRYSTFFGVVLAAVFAVGWSVIPQVFTRDTNVLNVMAGPWWQLVALIALGGVVFALDGILLGASDAAFLRTVSIASVVCGFLPGVWLALIFDAGLVGVWWGLIAFLCIRLGTCWWRFRSMKWARVS
>NZ_CP029644.1|WP_014302052.1|1565835_1566642_-|metallophosphoesterase
MVQTLWAVADLHAAVRANGGRIDTIQPHDPSDWLIVAGDVAERTSVVIDVLHELRQRFATVIWVPGNHELFCRSSDRFQGRAKYDELVRRCRQIDVLTPEDPYPVFHGVTVVPLFTLYDYSFRPEGLTIEAALQSAHDKQLVLTDQFAIAPFVDIRAWCWDRLAYSVHRLSRERGPKILINHWPLVQEPVSELPIPEIGLWCGTRHTRSWPVRYSATTVVYGHLHVPNERIIDGVRHVEVSLGYPHQWSQNIADRLWPFPVMTSEVAA
>NZ_CP029644.1|WP_010935090.1|1565146_1565839_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MIAGNNSEYALDSRLFPQSARSTALLVPRHTPDLSNFNRLHVLEKAQVKNAVAVRRAEFGDARWCAHQSLRKLGLYDHPAILRGERGMPLWPVGIAGSLTHTEGLRAAVVAPTTEVASMGIDAEIAEELPGGILGSIARPNEIAMLDDLRARGLLFADRLLFCAKEATYKAWFPITQRWLDFDQAEIDIRADGTFISYLLIRPTPFPFIEGKWAIHDGYVVATTVIPAMG
>NZ_CP029644.1|WP_014317952.1|1564247_1565150_+|tRNA-pseudouridine(55)-synthase-TruB
MNDALANSGLVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVASTKSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSLARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEENPHVSLTLDQALAASYPVLSVSEKEASDLAMGKWLTPRGLKGIHAAVDPHGRAIALVKEQGKRLATIFVARPSTL
>NZ_CP029644.1|WP_081337343.1|1563253_1564225_-|bifunctional-riboflavin-kinase/FAD-synthetase
MDQVDIWHRLEDIPADLKASVITIGVFDGVHRGHRTLVAAATDRAQALGVPSVLVTFNPHPLSVLRPDKMPPLLGTVNQRADLAESLGVDHMFAMNFTAELSHLSPEEFFCSVIKDKLNAQAVVVGKNFTFGYKAAGTTDTLKALGEKYGVEIYVLDLLTENGDVVSSTAIRSDLLEGDIRRANWGLGREFSVHGDVVRGAGRGGKELGFPTANLYFPDSIALPEDGVYAGWLTVTSSAPIDGDMVRGVRYPAAISVGHNPTFGDKRRSVESFVLDRHADLYGHSIVVEFVDRIRPMVKFDGIDELLVAIENDVTQTRAILHI
>NZ_CP029644.1|WP_110217711.1|1562256_1563216_-|nucleoside-hydrolase
MKKIILDLDTGIDDALALAYTLGSPELDLIGVTATYGNVLVETGVRNDLALLELFGRSDVPVFAGEPHALAKDGFEVLEISAFIHGKNGIGEAEVAEPVGVVQELSAVDFLIESVERYGDELIIVPTGAMTNIAAAMKKSETFARDAQIVFMGGALTAPGNVSQWAEANVNQDPEAADIMVRNAGNITMVGLDVTLQTLLTYAETATWRALGTPAGNFLADATDYYIKAYDTTAPHLGGCGLHDPLAVGVAIDPSLVTLLPINLKVDTEGPTRGRTIGDEVRLNDPQKNCKVAVGVDVDRFLKEFMERITRVAQGSNAR
>NZ_CP029644.1|WP_003851911.1|1561815_1562085_-|30S-ribosomal-protein-S15
MALSTEQKKSILAEYGLHETDTGSPEAQVALLSARINQLTEHLKFHKHDHHSRRGLLLLVGRRKGLLKYLADNNVDRYRDLIARLGLRR
>NZ_CP029644.1|WP_014302048.1|1559356_1561624_-|polyribonucleotide-nucleotidyltransferase
MSTKPSNVVFNIDEEFGITEAIATIDNGDFGKRTIRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMYDVVAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVAGRIVSKKQGKKTVDDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIEVLCRAQAGLAERAAKETQEFPLFPPYTDVVYDAVEKKVSKKLRSLLTIKSKQDRDEATNAYMEEIEADLIAQLGSDDEAAASKAIRAAYNAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRQFITALQLDTKLDGIPSEVLAQALSQANDARNTILDTMAEVIETPDEMSDYAPRITAITVPVNKIGEVIGPKGKTINSITEETGASISIEEDGTVYVSAASGAAAEAAIEKINAIANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGGGKRIEKVEDVVNVGDKLEVEILDIDNRGKISLAPVKNED
>NZ_CP029644.1|WP_070794665.1|1558430_1559177_-|4-hydroxy-tetrahydrodipicolinate-reductase
MAIKVGVLGAQGRVGQAIVAGVTAADDLELVAEVDRGDSLDVLVQSGAEVIVDFTTPDSVMDNLEFCISHGIHCVVGTTGFTPERLEILKKWAEEKGNTGVLIAPNFAISAVLTMAFARQAARFFDSAEVVEYHHPNKLDAPSGTAIHTAEGIAQARREAGMPTQPDATEQSLDGARGADVGGVKVHAVRMSGMVAHEEVIFGGLGQSLTIRQDSYDRTSFVPGVLVGVRNVAQHLGLTVGLEHYLDI
>NZ_CP029644.1|WP_014303544.1|1572449_1572782_-|YlxR-family-protein
MPSDSNQRSQQRIRTCIARRRPLPEASLLRVVALKDPDESTAVRVIPDPQRKMGGRGAWISPTLEALELAEKRRAFNRALRVSAVVDTGHVREYLAGLTARPNIVRKTEH
>NZ_CP029644.1|WP_014303545.1|1573038_1574037_-|transcription-termination/antitermination-protein-NusA
MNIDVQALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSVIVSELDEDGVVTTEYDDTPENFGRVGAQAVRDAIVRRLREAETLKAYDAYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKHGDRVKAYVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSKVAVKATVKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVHVEVTDAEAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDAS
>NZ_CP029644.1|WP_010935095.1|1574033_1574588_-|ribosome-maturation-factor-RimP
MAFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDAGEAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIGALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALEFDQALDRGEENK
>NZ_CP029644.1|WP_014303546.1|1574639_1575548_+|DUF4439-domain-containing-protein
MREVIFLQRSTTSAISAICLLGCVVACDISPSPEPNATLIDLAAIAHNDAAVLQSKNSALARQRHADSEELISEIQRLCGTNSEGKLPESCSNEIVQGAVDKQAVSLKETATESDAATRSAQAIVSAIDSAPSESLGLLGQQLVDLVRAGAAAPQSGIAQLDPRNEINKGTSKNDLIHDGESLKKALDWEYSAIYGLGVALAHSPTGTRTAVSDTITAHRDRVELLESSFAESFPNETIPRPEAAYEFSGYPEPHDAQSSRAFIDSLEADSAAWWLHALSESHSATWRALCASLAAQSAARR
>NZ_CP029644.1|WP_014303547.1|1575626_1577384_-|proline--tRNA-ligase
MITRLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYTWLPLGLRTLRKVETVVREEMDAIGAQELLFPALLPREPYEQTHRWTEYGDSLFRLKDRKGGDYLLGPTHEEMFASAVKDMYSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMSDAGLEESYQRHREAYQRILDRLGVEYVICAATSGAMGGSASEEFLAVSDNGEDTFVRATEGTYAANVEAVVTQPGVERPLEQAPEAVEYETPHAETIEALVQWAQSAGVTVEDRPVAAADTLKCLLVKITQPGAEEAELAGILLPGDREVDMKRLEASVEPAEVELACEEDFKNNPFLVKGYVGPRALNAHGVKVLADPRVVSGTSWIAGADAVEHHVVGLTMGRDFTVDGYIEAAEIREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDESGKRAIPTMGSYGIGVSRLMAVLAEQRHDETGLNWPLEVAPYQVHVVVANKDKEAIEAGDALVAALDSHGIEVLFDDRPKVSPGVKFKDAELLGMPFVVVLGRAFKDGNIELRERGQETVLVSADEIVDTVVAKLNR
>NZ_CP029644.1|WP_014303548.1|1577415_1578162_+|peroxide-stress-protein-YaaA
MLIVLPPSETKAVGGKNPAIDFDSLHFPTLNPIRKEIAHDLARLDIYQAQEILKLSQKLLPEAQRNIELFQSPTMPAVLRYTGVLYDALDATSLPSSTWEHLAIGSALFGVVMANDNIPHYRLSGTTKLPCADASVPTLKRRWGNAISTALSDTNEVILDLRSGTYQQIGKVKHAITVRVESEDSDGNRSVISHFNKHYKGQLARALLLHDVTPDPDHAIEDLIGMTQECGFAVEHSKPHELTVVIAQ
>NZ_CP029644.1|WP_014303550.1|1578181_1579006_-|uroporphyrinogen-III-C-methyltransferase
MVYRIMKKFTEISSRNRKLFKLAGMFSSSDSWIAPVSLIGGGPGAWDLITVRGMHRLQQADVILADHLGPASELAQLCDVSTKDIIDVSKLPYGKQVAQSKINELLIEHAQAGKKVARLKGGDPYIFGRGFEELQACAKHGIACEVVPGVTSAVSVPALAGIPITQRGVVHSFTVISGHVPPQHPQSLNDWEALARTGGTLSVIMGVKNAGAIAQALIDAGRGADTPVAVVQEGSTENQKSFKTTLAQLGQAMKDNDIKPPAVYVIGEVAGLQA
>NZ_CP029644.1|WP_014303549.1|1579004_1580351_+|hypothetical-protein
MPLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSTITQQGHAQAYSGHQFGRFNPLLGDGRALVLGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPMLREYLISEAFHGLGIPTTRSLAVITTGIDVQRERMLPGAVVVRVAQNHLRVGSVQCAAMRDDDSLAALVRYALSSHEDGVSDSEAAGLLLRHVSTSQAKLVAQWMRFGFVHGVMNTDNVTLSGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLIPIDEARNIIHEFPDMYRRSWLDEMADAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDGTTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDALEHAMNADMSAFSLLVEAGKNPYLRETRFEKLENPAPETWQDYMTYCGT
>NZ_CP029644.1|WP_014303551.1|1580354_1581479_-|GTP-binding-protein
MSHSTPVTVLSGFLGSGKTTLLNQMLSNRESKKIAVIVNDFSEINIDAALIAGEGHLERGEDKFVELTNGCICCTLRDDLVQSVGALASSGDYDHIVIESTGISEPMPVAATFEWVWDDGTRLADIAPIDTMATLVDASQFLTYMGKKTYLTDRDLGATEDDERTIADLLVDQVEFADKIYITKSDLVDDERYHATEALVRRMNPRASIDKLVDGRVITASGENRNAINDLLGAMCYDEETARTYQGYVAELDNPHTPETEEYGISSFVFKGDRPFDRQRLIAALRSTRGIVRSKGHCWISDRIDMVQVWHQAGPDLRIAPAGYWQSAGITPSNEIVVIGVNFDHAQAQQLLNDAMLSDSEVQQLLSTADAAKS
>NZ_CP029644.1|WP_041740521.1|1581498_1582008_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MHAEYGFVSTPDGQFCVVTDSMTHKILASGWTENVSELVGLIHRDLRPLSMREADVSLSIQNVISAYYDGRFARILTVPLLQQATDFRMSVWSALRRIPSGSPVSYATLARMSGHEGAVRAAASACANNPVALFVPCHRVIRSDGSYGGFRYGLAVKRSLLTREVAHNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029644_1	1.4\|39794\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007714	Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence	7232-7259	4	0.857
NZ_CP029644_1	1.4\|39794\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NZ_LN854559	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence	7225-7252	4	0.857
NZ_CP029644_1	1.4\|39794\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NZ_LN854559	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence	18387-18414	4	0.857
NZ_CP029644_1	1.4\|39794\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007184	Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis	10408-10435	4	0.857
NZ_CP029644_1	1.4\|39794\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007185	Sodalis glossinidius pSG2 plasmid from Glossina austini	10408-10435	4	0.857
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124188-124214	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124066-124092	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124212-124238	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124090-124116	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124196-124222	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124074-124100	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170385-170411	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	171117-171143	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124568-124594	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124446-124472	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124180-124206	4	0.852
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124058-124084	4	0.852
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1487524-1487551	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	334100-334127	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1738155-1738182	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	38206-38233	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	2003852-2003879	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1493843-1493870	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1490574-1490601	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1451976-1452003	5	0.821
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1490096-1490123	5	0.821
NZ_CP029644_1	1.11\|40242\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	40242-40269	28	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	22887-22914	5	0.821
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123517-123543	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123541-123567	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NZ_CP009803	Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence	80081-80107	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123525-123551	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	88022-88048	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246793-246819	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170263-170289	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123897-123923	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123509-123535	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	MK977714	Corynebacterium phage Bran, complete genome	22540-22566	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_048780	Corynebacterium phage StAB, complete genome	22546-22572	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	MK977706	Corynebacterium phage Dina, complete genome	22371-22397	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	MH926061	Corynebacterium phage Troy, complete genome	22111-22137	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_048789	Corynebacterium phage Stiles, complete genome	22038-22064	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_048069	Corynebacterium phage SamW, complete genome	22111-22137	5	0.815
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_048790	Corynebacterium phage Lederberg, complete genome	22496-22522	5	0.815
NZ_CP029644_1	1.1\|39602\|28\|NZ_CP029644\|CRISPRCasFinder,CRT	39602-39629	28	MK415402	Phage apr34_1792, complete genome	20132-20159	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	112045-112072	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	164109-164136	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	68248-68275	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	1926-1953	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	449842-449869	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	41685-41712	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	226537-226564	6	0.786
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	51552-51579	6	0.786
NZ_CP029644_1	1.11\|40242\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	40242-40269	28	MK448408	Streptococcus satellite phage Javan296, complete genome	4452-4479	6	0.786
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123395-123421	6	0.778
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123419-123445	6	0.778
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123403-123429	6	0.778
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246732-246758	6	0.778
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123775-123801	6	0.778
NZ_CP029644_1	1.12\|40306\|27\|NZ_CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123387-123413	6	0.778
NZ_CP029644_2	2.1\|697874\|30\|NZ_CP029644\|CRISPRCasFinder	697874-697903	30	CP016641	Mycobacterium sp. djl-10 plasmid djl-10_1, complete sequence	56059-56088	6	0.8
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1030852-1030879	7	0.75
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	632582-632609	7	0.75
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	289838-289865	7	0.75
NZ_CP029644_1	1.2\|39666\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NC_048144	Microbacterium phage Schubert, complete genome	20371-20398	7	0.75
NZ_CP029644_1	1.8\|40050\|28\|NZ_CP029644\|CRISPRCasFinder,CRT,PILER-CR	40050-40077	28	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	52060-52087	7	0.75

1. spacer 1.4|39794|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007714 (Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

2. spacer 1.4|39794|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN854559 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

3. spacer 1.4|39794|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN854559 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

4. spacer 1.4|39794|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007184 (Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

5. spacer 1.4|39794|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007185 (Sodalis glossinidius pSG2 plasmid from Glossina austini) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

6. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

7. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

8. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

9. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

10. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

11. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

12. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

13. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

14. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

15. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

16. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

17. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

18. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

19. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

20. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

21. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ttctgctcgggcgacagcaaacgcgcga	Protospacer
************* ***** ****   *

22. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

23. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

24. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

25. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

26. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

27. spacer 1.11|40242|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tatcaaaaagcttcaccttctcggtgag	CRISPR spacer
tcaccgaaagcttcaccttctcggtgaa	Protospacer
*  * .*********************.

28. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

29. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

30. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NZ_CP009803 (Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcaccagcggggatgctccgtacct	Protospacer
*****************  *****

31. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

32. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtatcc	Protospacer
******  ****************

33. spacer 1.12|40306|27|NZ_CP029644|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgttgtc	Protospacer
****.***********.****** *

34. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttaaa	Protospacer
******  *************** ..*

35. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

36. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

37. spacer 1.12|40306|27|NZ_CP029644|CRT matches to MK977714 (Corynebacterium phage Bran, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

38. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_048780 (Corynebacterium phage StAB, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

39. spacer 1.12|40306|27|NZ_CP029644|CRT matches to MK977706 (Corynebacterium phage Dina, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

40. spacer 1.12|40306|27|NZ_CP029644|CRT matches to MH926061 (Corynebacterium phage Troy, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

41. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_048789 (Corynebacterium phage Stiles, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgt	Protospacer
****.*************.****  *

42. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_048069 (Corynebacterium phage SamW, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

43. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_048790 (Corynebacterium phage Lederberg, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

44. spacer 1.1|39602|28|NZ_CP029644|CRISPRCasFinder,CRT matches to MK415402 (Phage apr34_1792, complete genome) position: , mismatch: 6, identity: 0.786

cacgtcaccatacatcgcctacaccgcg	CRISPR spacer
gctgtcaccatacaacgcctacaccgac	Protospacer
  .*********** ***********

45. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

46. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

47. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

48. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

49. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

50. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

51. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ccgcgctcgggcgcctgcacccgctgca	Protospacer
.. .*********** **** *******

52. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
aactgctcggccgccagcacactctccg	Protospacer
  ******** *********** ** *.

53. spacer 1.11|40242|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to MK448408 (Streptococcus satellite phage Javan296, complete genome) position: , mismatch: 6, identity: 0.786

tatcaaaaagcttcaccttctcggtgag	CRISPR spacer
actcaaaaagctccacgttctcggtcgg	Protospacer
  **********.*** ******** .*

54. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

55. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

56. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

57. spacer 1.12|40306|27|NZ_CP029644|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgtgttg	Protospacer
****.***********.******.  .

58. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

59. spacer 1.12|40306|27|NZ_CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

60. spacer 2.1|697874|30|NZ_CP029644|CRISPRCasFinder matches to CP016641 (Mycobacterium sp. djl-10 plasmid djl-10_1, complete sequence) position: , mismatch: 6, identity: 0.8

ttacccgacaaaaccaaaaccg-caggtcag	CRISPR spacer
ctacccggcaaaaccaaaaccgacccggca-	Protospacer
.******.************** *  * **

61. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

62. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

63. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

64. spacer 1.2|39666|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_048144 (Microbacterium phage Schubert, complete genome) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ttctgcttgggcgacagcacacgtgctc	Protospacer
*******.***** *********.  .

65. spacer 1.8|40050|28|NZ_CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 7, identity: 0.75

tccgctgtggaggagtcacgtgcggcta	CRISPR spacer
gttcctgtggaggagtcgcgtgtggctg	Protospacer
 .. *************.****.****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

136025 : 188719

Corynebacterium_phage(55.56%)

terminase,transposase,tail,integrase,holin,portal

attL 174323:174341|attR 195612:195630

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014316177.1\|136025_137252_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	2.1e-228	95.3
WP_110217813.1\|137421_138033_-	hypothetical protein	NA	NA	NA	NA
WP_044055057.1\|138041_138440_-	hypothetical protein	A0A1W6JQ88	Corynebacterium_phage	3.4e-42	64.4
WP_014316180.1\|138486_138996_-	hypothetical protein	A0A220NQS0	Corynebacterium_phage	3.7e-33	46.3
WP_014316181.1\|139131_139350_+	hypothetical protein	NA	NA	NA	NA
WP_014316182.1\|139548_139818_-	hypothetical protein	NA	NA	NA	NA
WP_044055149.1\|140133_140514_-	hypothetical protein	NA	NA	NA	NA
WP_014316184.1\|140596_141415_+	phage antirepressor Ant	A0A1W6JRI1	Corynebacterium_phage	4.4e-137	89.0
WP_014316185.1\|141434_141635_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014316186.1\|141631_141874_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	1.4e-19	59.0
WP_003850206.1\|141885_142110_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	4.9e-06	44.4
WP_044055058.1\|142242_142530_+	hypothetical protein	NA	NA	NA	NA
WP_014316188.1\|142668_143370_+	hypothetical protein	NA	NA	NA	NA
WP_014316190.1\|143805_145014_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	2.8e-132	67.3
WP_044055059.1\|145006_145594_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	4.5e-59	59.5
WP_044055061.1\|146214_146688_+	hypothetical protein	A0A1C9EHY3	Gordonia_phage	4.5e-25	49.6
WP_014316192.1\|146671_147739_+	hypothetical protein	A0A1C9EHW4	Gordonia_phage	2.4e-119	57.4
WP_014316193.1\|147713_148325_+\|terminase	terminase	A0A1C9EHV3	Gordonia_phage	2.1e-59	58.4
WP_110217814.1\|148324_149650_+\|portal	phage portal protein	A0A222YZB0	Rhodococcus_phage	1.6e-56	34.1
WP_044055150.1\|149786_151373_+	hypothetical protein	A0A1C9EHV4	Gordonia_phage	6.3e-39	37.2
WP_134859927.1\|151369_151681_+	hypothetical protein	NA	NA	NA	NA
WP_014316197.1\|151757_152378_+	hypothetical protein	NA	NA	NA	NA
WP_014316198.1\|152389_153379_+	hypothetical protein	G9FH86	Rhodococcus_phage	8.3e-106	59.8
WP_071570634.1\|153387_153687_+	hypothetical protein	NA	NA	NA	NA
WP_071570632.1\|153697_154108_+	hypothetical protein	NA	NA	NA	NA
WP_071570630.1\|154101_154473_+	hypothetical protein	NA	NA	NA	NA
WP_014316201.1\|154469_154784_+	hypothetical protein	A0A1C9EHV8	Gordonia_phage	3.6e-15	42.7
WP_110217815.1\|154792_155236_+	hypothetical protein	A0A1C9EI09	Gordonia_phage	4.5e-11	28.9
WP_014316203.1\|155245_156088_+	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	8.3e-14	51.2
WP_014316204.1\|157626_157980_+	hypothetical protein	NA	NA	NA	NA
WP_014316205.1\|158087_158423_+	hypothetical protein	A0A1C9EHV2	Gordonia_phage	1.7e-07	43.5
WP_110217442.1\|158439_164613_+\|tail	phage tail tape measure protein	A0A166XZ24	Gordonia_phage	1.7e-87	56.7
WP_014316207.1\|164630_165413_+	hypothetical protein	NA	NA	NA	NA
WP_014316208.1\|165413_166310_+	hypothetical protein	Q37921	Corynephage	1.6e-52	40.4
WP_044055064.1\|166302_167544_+	hypothetical protein	A0A1P8D5M2	Corynebacterium_phage	2.3e-36	44.9
WP_071570626.1\|167559_168744_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	3.1e-67	61.1
WP_016830418.1\|169464_170202_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JRK9	Corynebacterium_phage	1.6e-138	92.7
WP_110217443.1\|170201_170438_+\|holin	holin	A0A1W6JRG0	Corynebacterium_phage	9.6e-29	87.2
WP_071569944.1\|170443_170908_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	7.4e-57	72.2
WP_014316213.1\|170904_171243_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	7.1e-49	89.3
WP_003850266.1\|171592_173275_+	diphtheria toxin	A7UH54	Corynephage	0.0e+00	98.0
174323:174341	attL	NA	NA	NA	NA
WP_070797828.1\|174410_175817_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_070797827.1\|175804_177178_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_014301231.1\|177259_178162_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_070797826.1\|178155_178713_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_070797825.1\|178709_179660_-	class C sortase	NA	NA	NA	NA
WP_110217444.1\|180473_182159_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_088774836.1\|182279_183248_+	class C sortase	NA	NA	NA	NA
WP_070795274.1\|183247_184075_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_110217816.1\|184148_187655_+	cell surface protein	NA	NA	NA	NA
WP_070795276.1\|188437_188719_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
195612:195630	attR	NA	NA	NA	NA

DBSCAN-SWA_2

270289 : 312260

uncultured_Mediterranean_phage(15.38%)

holin,protease,integrase,transposase

attL 299831:299845|attR 317703:317717

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110217461.1\|270289_271474_+\|protease	MarP family serine protease	NA	NA	NA	NA
WP_110217462.1\|271470_272409_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003850430.1\|272496_272997_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_110217463.1\|273124_273778_+	hypothetical protein	NA	NA	NA	NA
WP_014309912.1\|273715_274573_-	HAD family hydrolase	NA	NA	NA	NA
WP_070795101.1\|275045_276083_+	hypothetical protein	NA	NA	NA	NA
WP_070795103.1\|276075_277173_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_014301308.1\|277169_277916_+	hypothetical protein	NA	NA	NA	NA
WP_014307879.1\|277915_278494_+	type II secretion system F family protein	NA	NA	NA	NA
WP_044026456.1\|278517_278715_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_014307880.1\|278711_278987_+	hypothetical protein	NA	NA	NA	NA
WP_014307881.1\|278983_279310_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_070798240.1\|279299_281636_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	3.8e-08	27.9
WP_003850453.1\|281904_282108_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.1e-15	62.3
WP_003850456.1\|282281_282899_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.0e-09	32.4
WP_070798241.1\|282895_283603_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-14	29.2
WP_016830091.1\|283599_284847_+	MFS transporter	NA	NA	NA	NA
WP_070798242.1\|284843_286331_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_110217464.1\|286331_288092_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_110217465.1\|288069_289563_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_110217466.1\|289702_292597_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	2.9e-98	36.1
WP_110217467.1\|292516_293179_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_021335438.1\|293940_295917_-	oligopeptide transporter, OPT family	NA	NA	NA	NA
WP_110217468.1\|296177_297077_+	DUF4862 family protein	NA	NA	NA	NA
WP_047938681.1\|297093_298620_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.1e-19	31.7
WP_014301324.1\|298618_299884_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	3.5e-08	28.4
299831:299845	attL	NA	NA	NA	NA
WP_080564334.1\|300336_300741_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_003850484.1\|300780_301188_+	hypothetical protein	NA	NA	NA	NA
WP_110217469.1\|301191_301956_-\|integrase	tyrosine-type recombinase/integrase	A0A1W6JRD7	Corynebacterium_phage	6.9e-76	60.3
WP_110217470.1\|302181_302391_-	hypothetical protein	A0A1W6JRD7	Corynebacterium_phage	1.4e-18	66.7
WP_014316305.1\|302575_303136_-	DNA-binding protein	NA	NA	NA	NA
WP_014302837.1\|303035_303281_-	hypothetical protein	NA	NA	NA	NA
WP_014302838.1\|303545_304070_+	hypothetical protein	NA	NA	NA	NA
WP_003850495.1\|304076_304403_+	hypothetical protein	NA	NA	NA	NA
WP_014319011.1\|304496_305846_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
WP_014317510.1\|306045_306204_+	hypothetical protein	NA	NA	NA	NA
WP_070795378.1\|306356_307343_-	Fic family protein	D7RWK9	Brochothrix_phage	3.7e-13	35.1
WP_014316316.1\|307381_308080_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	NA	NA	NA
WP_014316317.1\|308137_308944_-	S1 family peptidase	NA	NA	NA	NA
WP_014302843.1\|309550_310060_-	hypothetical protein	NA	NA	NA	NA
WP_085689425.1\|310542_310743_-\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.0e-07	46.0
WP_110217817.1\|310856_312260_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-28	34.4
317703:317717	attR	NA	NA	NA	NA

DBSCAN-SWA_3

712341 : 767802

Sulfolobus_islandicus_filamentous_virus(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110217524.1\|712341_712617_+\|transposase	transposase	NA	NA	NA	NA
WP_110217525.1\|712621_714712_+	peptidoglycan DD-metalloendopeptidase family protein	Q9ZX60	Mycobacterium_phage	5.6e-35	40.2
WP_110217526.1\|714716_715289_+	hypothetical protein	NA	NA	NA	NA
WP_110217527.1\|715375_716044_+	hypothetical protein	NA	NA	NA	NA
WP_110217528.1\|716043_717783_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_110217529.1\|717810_718338_+	DUF4913 domain-containing protein	NA	NA	NA	NA
WP_110217530.1\|718341_719034_+	hypothetical protein	NA	NA	NA	NA
WP_162565068.1\|719239_726067_-	hypothetical protein	A0A248SL14	Klebsiella_phage	1.4e-172	29.3
WP_110217532.1\|726835_730480_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_162565069.1\|730827_731238_+	hypothetical protein	NA	NA	NA	NA
WP_110217534.1\|731209_731701_+	hypothetical protein	NA	NA	NA	NA
WP_110217535.1\|731741_732128_-	recombinase family protein	M9Q1K0	Clostridium_phage	6.2e-09	31.4
WP_016421370.1\|732507_733479_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012360808.1\|733475_734306_+	serine hydrolase	NA	NA	NA	NA
WP_049151672.1\|734419_736201_+	penicillin-binding protein	NA	NA	NA	NA
WP_011018353.1\|736267_737452_-\|transposase	IS256-like element IS3503 family transposase	NA	NA	NA	NA
WP_016421371.1\|737605_739186_-	DEAD/DEAH box helicase family protein	A0A1D8BJ75	Sulfolobus_islandicus_filamentous_virus	1.5e-08	30.0
WP_016421370.1\|739189_740161_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012360808.1\|740157_740988_+	serine hydrolase	NA	NA	NA	NA
WP_049151672.1\|741101_742883_+	penicillin-binding protein	NA	NA	NA	NA
WP_011018353.1\|742949_744134_-\|transposase	IS256-like element IS3503 family transposase	NA	NA	NA	NA
WP_016421371.1\|744287_745868_-	DEAD/DEAH box helicase family protein	A0A1D8BJ75	Sulfolobus_islandicus_filamentous_virus	1.5e-08	30.0
WP_016421370.1\|745871_746843_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012360808.1\|746839_747670_+	serine hydrolase	NA	NA	NA	NA
WP_049151672.1\|747783_749565_+	penicillin-binding protein	NA	NA	NA	NA
WP_011018353.1\|749631_750816_-\|transposase	IS256-like element IS3503 family transposase	NA	NA	NA	NA
WP_110217537.1\|751399_752332_+	Abi family protein	A3QSC6	Clostridium_virus	3.0e-25	33.1
WP_110217538.1\|752467_752779_-	hypothetical protein	NA	NA	NA	NA
WP_101687430.1\|753168_754428_-	hypothetical protein	NA	NA	NA	NA
WP_162565070.1\|754424_754598_-	hypothetical protein	NA	NA	NA	NA
WP_110217539.1\|754684_755059_-	hypothetical protein	NA	NA	NA	NA
WP_070642168.1\|755196_755655_-	hypothetical protein	NA	NA	NA	NA
WP_110217540.1\|755774_755990_-	hypothetical protein	NA	NA	NA	NA
WP_083310474.1\|756041_757514_-	AAA family ATPase	A0A1B3B212	Gordonia_phage	1.8e-43	38.3
WP_110217542.1\|758262_759762_+	hypothetical protein	NA	NA	NA	NA
WP_004567165.1\|759788_760649_+	hypothetical protein	NA	NA	NA	NA
WP_157761928.1\|761882_762032_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157761929.1\|762125_762281_-	hypothetical protein	NA	NA	NA	NA
WP_004567169.1\|762490_763087_-	GcrC	NA	NA	NA	NA
WP_088261805.1\|763845_764079_+	hypothetical protein	NA	NA	NA	NA
WP_110217543.1\|764456_765665_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_003850535.1\|766731_767802_-\|protease	trypsin-like serine protease	NA	NA	NA	NA

DBSCAN-SWA_4

779194 : 788730

Corynebacterium_phage(30.0%)

integrase

attL 770675:770687|attR 786742:786754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
770675:770687	attL	NA	NA	NA	NA
WP_003850596.1\|779194_779884_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.2e-26	37.7
WP_003850598.1\|779900_780803_+	ABC transporter permease	NA	NA	NA	NA
WP_003850600.1\|780909_781401_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-36	52.2
WP_110217548.1\|782048_783302_+\|integrase	site-specific integrase	G1JV00	Mycobacterium_phage	1.7e-26	27.3
WP_045143474.1\|783317_783545_-	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	7.6e-23	64.8
WP_016830394.1\|783544_783697_-	hypothetical protein	NA	NA	NA	NA
WP_110217822.1\|783974_784265_-	ImmA/IrrE family metallo-endopeptidase	A0A1W6JQ88	Corynebacterium_phage	3.1e-21	52.7
WP_110217823.1\|784338_785358_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	8.3e-69	44.0
WP_110217549.1\|785606_786707_-	restriction endonuclease	A0A1S5SAB0	Streptococcus_phage	2.7e-49	34.7
WP_110217550.1\|786703_787081_-	ImmA/IrrE family metallo-endopeptidase	A0A1P8D5N3	Corynebacterium_phage	6.1e-33	52.9
786742:786754	attR	NA	NA	NA	NA
WP_162565071.1\|787093_787585_-	hypothetical protein	A0A0K0N6E3	Gordonia_phage	2.4e-13	37.3
WP_110217552.1\|787724_787952_+	hypothetical protein	NA	NA	NA	NA
WP_110217553.1\|787980_788730_+	phage antirepressor Ant	A0A139ZPI9	Marinitoga_camini_virus	4.9e-34	37.6

DBSCAN-SWA_5

792465 : 826710

Gordonia_phage(32.0%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110217557.1\|792465_793350_+	hypothetical protein	A0A160DCV3	Gordonia_phage	1.9e-53	43.0
WP_110217558.1\|793360_794212_+	hypothetical protein	A0A2D1GGG2	Gordonia_phage	4.3e-42	48.0
WP_110217559.1\|794208_794694_+	single-stranded DNA-binding protein	A0A2I2MPH3	Mycobacterium_phage	1.6e-17	46.0
WP_162565073.1\|794786_795758_+	hypothetical protein	A0A0U4IRC6	Gordonia_phage	1.6e-16	51.1
WP_110217561.1\|795754_796174_+	RusA family crossover junction endodeoxyribonuclease	D6PG23	uncultured_phage	6.5e-12	38.2
WP_110217562.1\|796170_796662_+	hypothetical protein	NA	NA	NA	NA
WP_110217563.1\|796654_797251_+	pentapeptide repeat-containing protein	A0A2H4P8Q0	Corynebacterium_phage	3.3e-17	53.3
WP_070803301.1\|797237_797990_+	site-specific DNA-methyltransferase	A0A0K0N5W3	Gordonia_phage	2.3e-108	72.8
WP_070803302.1\|797999_798635_+	hypothetical protein	NA	NA	NA	NA
WP_070803303.1\|798631_798997_+	hypothetical protein	NA	NA	NA	NA
WP_014319025.1\|798997_799666_+	hypothetical protein	NA	NA	NA	NA
WP_162565074.1\|799662_799821_+	hypothetical protein	NA	NA	NA	NA
WP_014319023.1\|799817_799955_+	hypothetical protein	NA	NA	NA	NA
WP_110217564.1\|799951_800143_+	hypothetical protein	NA	NA	NA	NA
WP_110217565.1\|800148_800418_+	hypothetical protein	NA	NA	NA	NA
WP_110217566.1\|800522_801191_+	site-specific DNA-methyltransferase	Q855N6	Mycobacterium_virus	1.3e-38	43.8
WP_082261191.1\|801261_801447_+	hypothetical protein	NA	NA	NA	NA
WP_110217568.1\|801519_802083_+	hypothetical protein	NA	NA	NA	NA
WP_071570578.1\|802208_802496_+	HNH endonuclease	A0A097EWJ7	Mycobacterium_phage	4.8e-06	38.2
WP_110217569.1\|803304_803721_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.9e-28	48.9
WP_082262677.1\|803698_805474_+\|terminase	terminase	A0A159B6M5	Tsukamurella_phage	6.5e-186	58.8
WP_082262679.1\|805470_806922_+\|portal	phage portal protein	G1BNA4	Mycobacterium_phage	5.0e-75	37.8
WP_082262680.1\|807609_808083_+	hypothetical protein	NA	NA	NA	NA
WP_085054390.1\|808072_808324_+	hypothetical protein	NA	NA	NA	NA
WP_082262682.1\|808547_809108_+	DUF4355 domain-containing protein	A0A2D1G9N8	Mycobacterium_phage	4.1e-09	51.9
WP_082262685.1\|809524_810550_+	hypothetical protein	A0A166XYQ6	Gordonia_phage	2.6e-78	46.2
WP_082262686.1\|810566_810791_+	hypothetical protein	NA	NA	NA	NA
WP_082262688.1\|810771_811146_+	hypothetical protein	A0A1J0MDW8	Mycobacterium_phage	2.3e-08	39.5
WP_082262690.1\|811150_811510_+	hypothetical protein	NA	NA	NA	NA
WP_162565075.1\|811513_811690_+	hypothetical protein	NA	NA	NA	NA
WP_110217570.1\|811695_811935_+	hypothetical protein	NA	NA	NA	NA
WP_082262693.1\|811931_812294_+	hypothetical protein	A0A2D1G9Q5	Mycobacterium_phage	2.7e-06	31.2
WP_082262695.1\|812329_813226_+	hypothetical protein	A0A2H4PEW8	Gordonia_phage	3.6e-23	38.6
WP_110217571.1\|813318_813597_+	hypothetical protein	NA	NA	NA	NA
WP_134866681.1\|813653_814208_+	hypothetical protein	A0A2H4PEX5	Gordonia_phage	5.4e-06	32.6
WP_110217572.1\|814226_819074_+	tape measure protein	A0A222ZGU3	Arthrobacter_phage	1.5e-70	60.1
WP_082262701.1\|819099_819891_+	hypothetical protein	NA	NA	NA	NA
WP_110217573.1\|819881_820778_+	hypothetical protein	A0A1P8D5L4	Corynebacterium_phage	2.4e-27	31.6
WP_110217574.1\|820777_821947_+	hypothetical protein	Q37922	Corynephage	5.4e-80	57.4
WP_110217575.1\|821946_823374_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	3.7e-46	51.9
WP_110217576.1\|823373_824051_+	hypothetical protein	NA	NA	NA	NA
WP_110217824.1\|824798_825575_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JY73	Gordonia_phage	1.3e-69	54.1
WP_110217577.1\|825577_825901_+	hypothetical protein	NA	NA	NA	NA
WP_110217578.1\|825907_826375_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	6.7e-58	75.8
WP_110217579.1\|826371_826710_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	1.6e-05	48.1

DBSCAN-SWA_6

1892548 : 1951932

Agrobacterium_phage(18.18%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070797751.1\|1892548_1895257_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	9.4e-136	37.4
WP_070794623.1\|1895351_1896332_-	malate dehydrogenase	NA	NA	NA	NA
WP_014303750.1\|1896814_1897567_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014310722.1\|1897603_1898896_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	54.2
WP_070794624.1\|1899042_1901568_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	2.1e-65	30.4
WP_003852475.1\|1901662_1902292_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-38	44.0
WP_003852476.1\|1902309_1902909_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-41	46.7
WP_162565080.1\|1903074_1904421_-	trigger factor	NA	NA	NA	NA
WP_003852480.1\|1905248_1905485_+	hypothetical protein	NA	NA	NA	NA
WP_003852481.1\|1905631_1906414_+	hypothetical protein	NA	NA	NA	NA
WP_003852484.1\|1906490_1906964_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_014303756.1\|1906995_1907616_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_085688766.1\|1907737_1910356_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.8e-43	27.5
WP_014318078.1\|1910332_1910539_-	hypothetical protein	NA	NA	NA	NA
WP_003852488.1\|1910737_1911754_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_010935343.1\|1911765_1912158_+	globin	NA	NA	NA	NA
WP_072564893.1\|1912154_1912775_-	hypothetical protein	NA	NA	NA	NA
WP_010935345.1\|1912784_1913228_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_070794630.1\|1913354_1915025_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	2.3e-47	29.3
WP_003852496.1\|1915122_1915611_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_014320369.1\|1915794_1917831_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_110217733.1\|1918057_1920343_+	carbon starvation protein A	NA	NA	NA	NA
WP_070794631.1\|1920363_1920564_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_014302244.1\|1920595_1921801_-	MFS transporter	NA	NA	NA	NA
WP_081337342.1\|1922206_1923238_+	oxidoreductase	NA	NA	NA	NA
WP_070794640.1\|1923297_1924098_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003852526.1\|1924116_1924749_+	oligoribonuclease	M4M9I5	Vibrio_phage	5.6e-23	38.6
WP_070794633.1\|1924926_1925757_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_082260718.1\|1925757_1927011_-	L,D-transpeptidase	NA	NA	NA	NA
WP_010935366.1\|1927594_1927774_-	hypothetical protein	NA	NA	NA	NA
WP_003852589.1\|1927967_1928417_+	isochorismatase family protein	NA	NA	NA	NA
WP_003852590.1\|1928420_1928726_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003852591.1\|1928738_1929014_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_014307203.1\|1929102_1929576_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_003852595.1\|1929576_1930221_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_110217734.1\|1930217_1930601_-	holo-ACP synthase	NA	NA	NA	NA
WP_110217735.1\|1930635_1939572_-	DUF1729 domain-containing protein	NA	NA	NA	NA
WP_014307205.1\|1939750_1940128_-	hypothetical protein	NA	NA	NA	NA
WP_014303769.1\|1940433_1940805_+	hypothetical protein	NA	NA	NA	NA
WP_003852603.1\|1940832_1941189_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_014303770.1\|1941185_1941809_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	Q66YC8	Euphorbia_ringspot_virus	2.5e-07	41.8
WP_003852605.1\|1941805_1942531_-	ribonuclease PH	NA	NA	NA	NA
WP_010935376.1\|1942541_1943360_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003852607.1\|1943361_1944159_-	glutamate racemase	NA	NA	NA	NA
WP_014307209.1\|1944155_1944728_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_110217736.1\|1944724_1945657_-	P1 family peptidase	NA	NA	NA	NA
WP_110217737.1\|1945656_1946193_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_010935380.1\|1946209_1946551_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010935381.1\|1946612_1947926_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_003852617.1\|1947957_1949925_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.8e-67	29.8
WP_003852618.1\|1949926_1950454_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|1951167_1951932_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_7

2131075 : 2208332

Bacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110217753.1\|2131075_2132425_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
WP_070798336.1\|2133069_2134443_+	dipeptidase	NA	NA	NA	NA
WP_070798348.1\|2134630_2135791_+	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_070798337.1\|2135733_2136813_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_070798338.1\|2136809_2137358_-	LytR C-terminal domain-containing protein	NA	NA	NA	NA
WP_070798339.1\|2137360_2137564_-	DUF3263 domain-containing protein	NA	NA	NA	NA
WP_110217754.1\|2137562_2138126_+	peptide deformylase	A0A2I7R224	Vibrio_phage	1.4e-12	38.2
WP_014318216.1\|2138142_2139030_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_070798340.1\|2139034_2139742_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_070798341.1\|2139738_2141172_+	cardiolipin synthase	NA	NA	NA	NA
WP_003852994.1\|2141885_2142623_-	multidrug ABC transporter permease	NA	NA	NA	NA
WP_077393420.1\|2142606_2143536_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.1e-30	37.7
WP_070798343.1\|2143537_2144794_+	phenol hydroxylase	NA	NA	NA	NA
WP_070798344.1\|2144790_2145738_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_014310879.1\|2145734_2147897_+	serine/threonine protein kinase	A0A1V0SBL0	Catovirus	3.5e-08	24.5
WP_110217755.1\|2147916_2149116_-	acetate kinase	NA	NA	NA	NA
WP_014310880.1\|2149116_2150484_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_082258498.1\|2150746_2152105_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014302401.1\|2152116_2153013_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_003853372.1\|2153044_2153545_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_070798312.1\|2153576_2154464_+	hypothetical protein	NA	NA	NA	NA
WP_070798313.1\|2154460_2155891_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_003853381.1\|2156273_2157563_-	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	1.5e-67	35.4
WP_155403263.1\|2157696_2157864_-	hypothetical protein	NA	NA	NA	NA
WP_014320488.1\|2158305_2159037_+	hypothetical protein	NA	NA	NA	NA
WP_070798314.1\|2159033_2160161_-	hypothetical protein	NA	NA	NA	NA
WP_070798315.1\|2160274_2161408_+	hypothetical protein	NA	NA	NA	NA
WP_014307372.1\|2161499_2162624_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_070798316.1\|2163092_2164004_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_070798317.1\|2164292_2165348_+	hypothetical protein	NA	NA	NA	NA
WP_094078774.1\|2165677_2166121_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_110217756.1\|2167450_2168113_+	hypothetical protein	NA	NA	NA	NA
WP_081338994.1\|2168323_2170606_-	GcrY protein	Q6NE04	Leptospira_phage	4.4e-134	38.8
WP_047939373.1\|2172694_2173366_-	hypothetical protein	NA	NA	NA	NA
WP_014307384.1\|2174788_2174986_+	hypothetical protein	NA	NA	NA	NA
WP_047939377.1\|2174985_2175324_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_077393419.1\|2175310_2175865_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.9e-23	37.1
WP_014307386.1\|2176378_2177461_+	DtxR family transcriptional regulator	NA	NA	NA	NA
WP_014307387.1\|2177503_2178649_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_110217757.1\|2178630_2184165_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	7.1e-37	27.9
WP_014303369.1\|2184157_2184766_+	glyoxalase	NA	NA	NA	NA
WP_014307389.1\|2184762_2186394_+	AMP-binding protein	NA	NA	NA	NA
WP_110217758.1\|2186406_2193978_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.4e-32	29.3
WP_014307391.1\|2194069_2194696_+	MptD family putative ECF transporter S component	NA	NA	NA	NA
WP_014303365.1\|2194695_2195442_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_014303364.1\|2195438_2196917_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.7e-15	29.9
WP_047939386.1\|2196920_2198645_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-28	26.5
WP_014307393.1\|2198644_2200411_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-31	26.1
WP_014303361.1\|2200438_2201188_-	thioesterase	NA	NA	NA	NA
WP_014303360.1\|2201220_2202399_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_014303359.1\|2202445_2203075_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_014303358.1\|2203486_2204551_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	4.1e-18	33.3
WP_014303357.1\|2204547_2205309_+	ABC transporter permease	NA	NA	NA	NA
WP_014303356.1\|2205301_2206123_+	ABC transporter permease	NA	NA	NA	NA
WP_014307395.1\|2206624_2206948_-\|transposase	transposase	Q6H9S3	Enterobacteria_phage	9.8e-24	55.3
WP_044026267.1\|2206928_2208332_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-28	34.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection