CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP029724	Klebsiella pneumoniae strain AR_0140 plasmid unnamed2, complete sequence	0 crisprs	RT,csa3	2
NZ_CP029722	Klebsiella pneumoniae strain AR_0140 chromosome, complete genome	2 crisprs	RT,cas3,DinG,WYL,DEDDh,csa3	8
NZ_CP029723	Klebsiella pneumoniae strain AR_0140 plasmid unnamed1, complete sequence	0 crisprs	RT,csa3	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39998 : 109061

uncultured_Caudovirales_phage(27.78%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085955172.1\|39998_41206_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|42634_43066_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|43316_44792_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|44784_45465_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|45654_47040_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|47068_47422_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004098959.1\|47535_48828_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|48838_51985_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|52071_52512_+	hypothetical protein	NA	NA	NA	NA
WP_023317528.1\|52638_55092_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	9.9e-84	35.5
WP_000843497.1\|55132_55330_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004182013.1\|55363_56101_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|56389_56839_-	copper resistance protein	NA	NA	NA	NA
WP_068814620.1\|57072_58890_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|58889_59786_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_009654298.1\|59825_60206_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|60210_61140_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|61194_61875_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|61871_63272_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_068814621.1\|63488_63923_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_024623170.1\|64154_64334_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004196769.1\|66076_66586_+	major intrinsic family protein	NA	NA	NA	NA
WP_004196778.1\|66635_67133_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|67464_67791_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004182006.1\|67787_68501_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|68509_69055_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|69130_69493_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|71389_71926_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|71958_72384_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|72396_73686_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|73733_75485_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|75502_75865_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|75914_76265_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|76622_76892_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|76879_77455_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|77485_77980_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|78023_78392_+	hypothetical protein	NA	NA	NA	NA
WP_068814622.1\|78425_78629_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|78677_78935_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|79010_79265_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|79440_79707_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|79694_80177_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_077253535.1\|80384_81731_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004143398.1\|81779_82175_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_009653207.1\|82363_83761_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004197671.1\|84000_84279_-	hypothetical protein	NA	NA	NA	NA
WP_004197678.1\|84613_85180_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_004197675.1\|85304_86948_-	alpha-D-glucose phosphate-specific phosphoglucomutase	A0A1X9I671	Streptococcus_phage	1.5e-22	25.0
WP_023157975.1\|87061_89509_-	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	6.1e-25	69.2
WP_009653212.1\|89527_90961_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_004099051.1\|91049_92333_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_004099052.1\|92462_94655_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
WP_013815099.1\|95027_95996_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_022631502.1\|96296_96497_+	hypothetical protein	NA	NA	NA	NA
WP_019706028.1\|100754_101306_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	1.0e-73	79.0
WP_019706029.1\|101321_103418_+	hypothetical protein	NA	NA	NA	NA
WP_019706030.1\|103809_104814_+	hypothetical protein	NA	NA	NA	NA
WP_068814598.1\|105024_108033_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	62.8
WP_001067855.1\|108356_109061_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

112155 : 128783

Escherichia_phage(50.0%)

transposase,integrase

attL 108294:108353|attR 124602:125422

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
108294:108353	attL	NA	NA	NA	NA
WP_001389365.1\|112155_112920_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000427614.1\|114291_115296_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000656305.1\|115606_115984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_068815675.1\|116184_116844_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	7.1e-130	99.5
WP_004189163.1\|117467_117908_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_004189161.1\|117904_118255_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004902302.1\|118285_119878_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_015059985.1\|120517_121774_-	EreA family erythromycin esterase	NA	NA	NA	NA
WP_000237816.1\|122019_122472_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA
WP_000845048.1\|122644_123658_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|123893_124598_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001445937.1\|124978_125935_+	hypothetical protein	NA	NA	NA	NA
124602:125422	attR	NA	NA	NA	NA
WP_011977825.1\|125961_126123_+	hypothetical protein	NA	NA	NA	NA
WP_000176305.1\|126119_126731_-	DUF2913 family protein	NA	NA	NA	NA
WP_001568067.1\|126784_127066_-	hypothetical protein	NA	NA	NA	NA
WP_011977766.1\|127238_127574_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_000019450.1\|127802_128783_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029722

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029722_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029722_1

1780378-1780517

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029722_1

>merge|NZ_CP029722|1|1780378-1780517|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP029722|1|1|1780378-1780517|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029722.1\|WP_002889795.1\|1771545_1772946_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP029722.1\|WP_002889733.1\|1775575_1776034_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP029722.1\|WP_032442397.1\|1770112_1771396_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP029722.1\|WP_016530034.1\|1776291_1777749_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP029722.1\|WP_002889699.1\|1787016_1787757_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP029722.1\|WP_004145825.1\|1788569_1789151_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP029722.1\|WP_004191866.1\|1772991_1773684_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP029722.1\|WP_004177336.1\|1783232_1784027_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP029722.1\|WP_004177335.1\|1781998_1782595_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP029722.1\|WP_002889720.1\|1780762_1781986_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP029722.1\|WP_068815387.1\|1779461_1780322_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP029722.1\|WP_002889726.1\|1778246_1779302_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP029722.1\|WP_016530033.1\|1777791_1778244_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP029722.1\|WP_004178678.1\|1780544_1780760_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP029722.1\|WP_002889742.1\|1774225_1775470_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP029722.1\|WP_004147186.1\|1784019_1785258_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP029722.1\|WP_002889716.1\|1782601_1783240_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP029722.1\|WP_023279835.1\|1787727_1788495_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP029722.1\|WP_004222799.1\|1773769_1774168_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP029722.1\|WP_002889702.1\|1785261_1786605_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426

Protein	Function_ID	Function_description	E-value
NZ_CP029722.1\|WP_002889795.1\|1771545_1772946_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP029722.1\|WP_002889733.1\|1775575_1776034_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP029722.1\|WP_032442397.1\|1770112_1771396_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP029722.1\|WP_016530034.1\|1776291_1777749_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP029722.1\|WP_002889699.1\|1787016_1787757_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP029722.1\|WP_004145825.1\|1788569_1789151_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP029722.1\|WP_004191866.1\|1772991_1773684_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	1.02696e-150
NZ_CP029722.1\|WP_004177336.1\|1783232_1784027_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP029722.1\|WP_004177335.1\|1781998_1782595_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP029722.1\|WP_002889720.1\|1780762_1781986_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP029722.1\|WP_068815387.1\|1779461_1780322_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	4.19581e-128
NZ_CP029722.1\|WP_002889726.1\|1778246_1779302_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP029722.1\|WP_016530033.1\|1777791_1778244_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	9.00839e-84
NZ_CP029722.1\|WP_004178678.1\|1780544_1780760_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
NZ_CP029722.1\|WP_002889742.1\|1774225_1775470_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP029722.1\|WP_004147186.1\|1784019_1785258_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP029722.1\|WP_002889716.1\|1782601_1783240_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP029722.1\|WP_023279835.1\|1787727_1788495_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.17083e-144
NZ_CP029722.1\|WP_004222799.1\|1773769_1774168_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.4715e-83
NZ_CP029722.1\|WP_002889702.1\|1785261_1786605_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0

>NZ_CP029722.1|WP_068815387.1|1779461_1780322_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSGLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPTTLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_CP029722.1|WP_002889726.1|1778246_1779302_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP029722.1|WP_016530033.1|1777791_1778244_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAMVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAAHGEWFINYRMEKRVALW
>NZ_CP029722.1|WP_016530034.1|1776291_1777749_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP029722.1|WP_002889733.1|1775575_1776034_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP029722.1|WP_002889742.1|1774225_1775470_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP029722.1|WP_004222799.1|1773769_1774168_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSERLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP029722.1|WP_004191866.1|1772991_1773684_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASERLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP029722.1|WP_002889795.1|1771545_1772946_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP029722.1|WP_032442397.1|1770112_1771396_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFPGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLNIIADCFSEAKQA
>NZ_CP029722.1|WP_004178678.1|1780544_1780760_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP029722.1|WP_002889720.1|1780762_1781986_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP029722.1|WP_004177335.1|1781998_1782595_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP029722.1|WP_002889716.1|1782601_1783240_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP029722.1|WP_004177336.1|1783232_1784027_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP029722.1|WP_004147186.1|1784019_1785258_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP029722.1|WP_002889702.1|1785261_1786605_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP029722.1|WP_002889699.1|1787016_1787757_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP029722.1|WP_023279835.1|1787727_1788495_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWELFCLGERVV
>NZ_CP029722.1|WP_004145825.1|1788569_1789151_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Crispr_ID: NZ_CP029722_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029722_2

1997542-1997636

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029722_2

>merge|NZ_CP029722|2|1997542-1997636|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP029722|2|2|1997542-1997636|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029722.1\|WP_004177424.1\|1986660_1988163_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP029722.1\|WP_004147026.1\|2001194_2003543_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP029722.1\|WP_032411667.1\|1991716_1994623_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP029722.1\|WP_004145972.1\|1983757_1984603_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP029722.1\|WP_002888347.1\|1995369_1995909_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP029722.1\|WP_023279864.1\|1984940_1986650_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP029722.1\|WP_002888323.1\|2006699_2007077_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP029722.1\|WP_004222649.1\|1989171_1991529_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP029722.1\|WP_004192048.1\|1997777_1999403_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP029722.1\|WP_004145980.1\|1994635_1995295_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP029722.1\|WP_002888345.1\|1996088_1997453_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP029722.1\|WP_023279867.1\|1999392_2000091_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP029722.1\|WP_004219851.1\|1984588_1984759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029722.1\|WP_002888329.1\|2003597_2004884_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP029722.1\|WP_002888327.1\|2004889_2005879_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP029722.1\|WP_023279868.1\|2007081_2007930_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP029722.1\|WP_002888332.1\|2000123_2000951_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP029722.1\|WP_002888320.1\|2008181_2008661_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP029722.1\|WP_002888324.1\|2005875_2006697_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP029722.1\|WP_002888353.1\|1988300_1988996_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NZ_CP029722.1\|WP_004177424.1\|1986660_1988163_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP029722.1\|WP_004147026.1\|2001194_2003543_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP029722.1\|WP_032411667.1\|1991716_1994623_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP029722.1\|WP_004145972.1\|1983757_1984603_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP029722.1\|WP_002888347.1\|1995369_1995909_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP029722.1\|WP_023279864.1\|1984940_1986650_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP029722.1\|WP_002888323.1\|2006699_2007077_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP029722.1\|WP_004222649.1\|1989171_1991529_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP029722.1\|WP_004192048.1\|1997777_1999403_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP029722.1\|WP_023279867.1\|1999392_2000091_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	8.0242e-66
NZ_CP029722.1\|WP_002888345.1\|1996088_1997453_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP029722.1\|WP_004145980.1\|1994635_1995295_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
NZ_CP029722.1\|WP_002888329.1\|2003597_2004884_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP029722.1\|WP_002888327.1\|2004889_2005879_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP029722.1\|WP_023279868.1\|2007081_2007930_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP029722.1\|WP_002888332.1\|2000123_2000951_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP029722.1\|WP_002888320.1\|2008181_2008661_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP029722.1\|WP_002888324.1\|2005875_2006697_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP029722.1\|WP_002888353.1\|1988300_1988996_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>NZ_CP029722.1|WP_002888345.1|1996088_1997453_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP029722.1|WP_002888347.1|1995369_1995909_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP029722.1|WP_004145980.1|1994635_1995295_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP029722.1|WP_032411667.1|1991716_1994623_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRLLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP029722.1|WP_004222649.1|1989171_1991529_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP029722.1|WP_002888353.1|1988300_1988996_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP029722.1|WP_004177424.1|1986660_1988163_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP029722.1|WP_023279864.1|1984940_1986650_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP029722.1|WP_004219851.1|1984588_1984759_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP029722.1|WP_004145972.1|1983757_1984603_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP029722.1|WP_004192048.1|1997777_1999403_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP029722.1|WP_023279867.1|1999392_2000091_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAVGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP029722.1|WP_002888332.1|2000123_2000951_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP029722.1|WP_004147026.1|2001194_2003543_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP029722.1|WP_002888329.1|2003597_2004884_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP029722.1|WP_002888327.1|2004889_2005879_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP029722.1|WP_002888324.1|2005875_2006697_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP029722.1|WP_002888323.1|2006699_2007077_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP029722.1|WP_023279868.1|2007081_2007930_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAAAS
>NZ_CP029722.1|WP_002888320.1|2008181_2008661_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

235407 : 244822

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|235407_236028_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004183946.1\|236020_237286_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002903955.1\|237297_238200_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|238461_239223_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023280043.1\|239243_240104_-	inhibitor-resistant class A broad-spectrum beta-lactamase SHV-26	A0A077SL40	Escherichia_phage	1.7e-155	99.3
WP_004176262.1\|240401_240662_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620097.1\|240748_241837_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176258.1\|241867_243133_-	MFS transporter	NA	NA	NA	NA
WP_161283558.1\|243187_244822_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	6.9e-182	55.7

DBSCAN-SWA_2

687777 : 743195

Enterobacteria_phage(52.94%)

tRNA,tail,plate,capsid,integrase,portal,head,terminase,transposase

attL 693005:693022|attR 729431:729448

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|687777_688278_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|688394_688841_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|688824_689619_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_162616948.1\|689726_690902_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|690933_691626_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|691771_692281_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|692285_692624_+	DUF488 family protein	NA	NA	NA	NA
WP_004190888.1\|692613_692853_-	DUF333 domain-containing protein	NA	NA	NA	NA
693005:693022	attL	NA	NA	NA	NA
WP_004213128.1\|693117_693369_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_068815128.1\|693412_694552_-	phage late control D family protein	B9A7A9	Serratia_phage	3.2e-146	71.3
WP_068815130.1\|694706_695879_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	3.2e-157	70.2
WP_032414481.1\|695878_696394_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.7e-57	61.2
WP_004131585.1\|696439_696757_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_032440702.1\|696756_696915_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_068815132.1\|696901_699877_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	9.5e-222	46.8
WP_032457467.1\|699891_700383_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	5.6e-55	62.7
WP_068815134.1\|700698_702186_+	hypothetical protein	NA	NA	NA	NA
WP_032457351.1\|702435_703533_-\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	1.3e-11	29.0
WP_009486478.1\|703532_703745_-	hypothetical protein	NA	NA	NA	NA
WP_068815136.1\|703741_706768_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	1.9e-23	40.0
WP_068815138.1\|706757_707681_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	2.2e-52	43.2
WP_004131573.1\|707682_708033_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	6.2e-24	59.3
WP_068815140.1\|708029_708617_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.9e-59	60.0
WP_068815142.1\|708613_709249_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.3e-56	51.4
WP_068815144.1\|709245_709713_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.7e-46	58.8
WP_159080880.1\|709713_710049_-	peptidase	B6SD31	Bacteriophage	1.2e-05	33.3
WP_023339943.1\|710235_710781_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|710777_711062_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|711052_711253_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_023339940.1\|711252_711768_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_068815146.1\|711880_712738_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	58.6
WP_004213107.1\|712787_713822_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.2e-96	50.0
WP_068815147.1\|713831_714671_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.5e-95	66.7
WP_068815148.1\|714827_716555_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.5e-235	68.6
WP_050597847.1\|716548_717610_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	4.5e-142	67.8
WP_068815150.1\|718209_719034_+	hypothetical protein	NA	NA	NA	NA
WP_068815152.1\|719403_719763_-	hypothetical protein	NA	NA	NA	NA
WP_071549017.1\|720012_721752_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_068815154.1\|724451_725468_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	1.5e-65	43.7
WP_068815155.1\|725741_726308_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	7.2e-14	33.2
WP_004213098.1\|726304_726529_-	hypothetical protein	NA	NA	NA	NA
WP_004213097.1\|726597_726870_-	hypothetical protein	NA	NA	NA	NA
WP_068815159.1\|726885_727263_-	hypothetical protein	NA	NA	NA	NA
WP_023328080.1\|727278_727497_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_020806130.1\|727517_727796_-	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_068815161.1\|727916_728216_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	7.1e-37	75.8
WP_068815163.1\|728331_729345_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	2.2e-154	79.4
WP_068815165.1\|729579_730593_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.5
729431:729448	attR	NA	NA	NA	NA
WP_004150782.1\|730650_730752_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|730751_730826_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|730943_731069_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|731128_731392_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|731522_732161_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|732250_733165_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|733825_734869_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|735171_736380_+	HD domain-containing protein	NA	NA	NA	NA
WP_023279889.1\|736453_738238_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_068815169.1\|738244_739135_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|739255_740764_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004140498.1\|740797_740962_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|741074_741761_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004099053.1\|742226_743195_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8

DBSCAN-SWA_3

994350 : 1003813

Bacillus_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023279659.1\|994350_996072_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.2e-14	22.6
WP_004141853.1\|996098_996818_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|997171_997390_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|997509_999789_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|999819_1000137_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|1000462_1000684_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|1000760_1002701_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|1002697_1003813_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_4

1453273 : 1528269

Enterobacteria_phage(19.57%)

tRNA,tail,plate,capsid,integrase,holin,portal,head,terminase,transposase

attL 1475014:1475060|attR 1520641:1520687

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002892491.1\|1453273_1454791_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	9.5e-85	36.3
WP_004151795.1\|1455122_1456598_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	6.9e-48	29.0
WP_002892486.1\|1456657_1458805_-	lysine decarboxylase CadA	NA	NA	NA	NA
WP_002892484.1\|1458887_1460222_-	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_004147422.1\|1460587_1462156_-	CadC family transcriptional regulator	NA	NA	NA	NA
WP_002892402.1\|1462448_1462721_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002892400.1\|1462821_1463742_-	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	A0A1W6JP29	Morganella_phage	5.4e-51	40.1
WP_004211259.1\|1464252_1465119_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004147417.1\|1465141_1466167_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_023279772.1\|1466168_1468604_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012068380.1\|1468614_1469310_-	molecular chaperone	NA	NA	NA	NA
WP_004151792.1\|1469368_1469929_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_020804404.1\|1470400_1471063_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_002892375.1\|1471040_1471346_+	hypothetical protein	NA	NA	NA	NA
WP_004147414.1\|1471398_1472703_-	citrate synthase	NA	NA	NA	NA
WP_004142684.1\|1472748_1472889_-	hypothetical protein	NA	NA	NA	NA
WP_002892370.1\|1473213_1473384_+	hypothetical protein	NA	NA	NA	NA
WP_002892366.1\|1473462_1473864_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002892360.1\|1474259_1474553_-	hypothetical protein	NA	NA	NA	NA
1475014:1475060	attL	NA	NA	NA	NA
WP_074192281.1\|1475215_1475422_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.6e-08	47.7
WP_071549009.1\|1476764_1477610_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_162616951.1\|1478708_1480331_+	glycosyl transferase	NA	NA	NA	NA
WP_025713552.1\|1480748_1481063_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	4.4e-13	48.4
WP_141769812.1\|1481220_1481766_-	hypothetical protein	A0A291LCK3	Klebsiella_phage	6.3e-15	38.1
WP_004176137.1\|1481746_1482778_-\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_068815285.1\|1482861_1483041_-	hypothetical protein	NA	NA	NA	NA
WP_025713554.1\|1483093_1483690_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	3.6e-32	36.4
WP_065954093.1\|1483686_1484835_-\|plate	baseplate J/gp47 family protein	B6SBU6	Clostridium_virus	1.7e-09	26.1
WP_068815287.1\|1484824_1485274_-	hypothetical protein	A0A0C4UR04	Shigella_phage	2.3e-15	39.7
WP_065954091.1\|1485270_1485852_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_049268057.1\|1485848_1486934_-\|tail	tail protein	Q8SBG7	Shigella_phage	1.5e-39	30.6
WP_068815289.1\|1486930_1488331_-	hypothetical protein	A0A2P9JZK2	Alteromonadaceae_phage	4.0e-05	39.1
WP_068815295.1\|1488377_1490231_-	hypothetical protein	A0A172JGI1	Citrobacter_phage	1.8e-21	45.3
WP_047719073.1\|1490372_1490651_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000896639.1\|1490652_1491024_-\|tail	phage tail protein	NA	NA	NA	NA
WP_068815297.1\|1491027_1492539_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.2e-103	44.4
WP_071549008.1\|1492543_1492720_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_065954087.1\|1492722_1493268_-	ATP-binding protein	NA	NA	NA	NA
WP_068815298.1\|1493264_1493624_-	hypothetical protein	NA	NA	NA	NA
WP_068815299.1\|1493628_1494009_-	hypothetical protein	NA	NA	NA	NA
WP_068815300.1\|1494010_1495060_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	8.1e-51	33.7
WP_068815301.1\|1495158_1495566_-\|head	head decoration protein	NA	NA	NA	NA
WP_068815304.1\|1495565_1496156_-	hypothetical protein	NA	NA	NA	NA
WP_040210580.1\|1496157_1497024_-	S49 family peptidase	A0A248XD65	Klebsiella_phage	1.1e-48	48.1
WP_068815306.1\|1497020_1498655_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	1.4e-89	35.5
WP_000483310.1\|1498654_1498918_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_068815311.1\|1498926_1501053_-\|terminase	terminase	A0A0C5ABH4	Bacteriophage	6.1e-98	34.5
WP_068815313.1\|1500994_1501576_-	hypothetical protein	NA	NA	NA	NA
WP_065954080.1\|1501837_1502476_-	hypothetical protein	NA	NA	NA	NA
WP_065954079.1\|1502571_1502778_-	hypothetical protein	NA	NA	NA	NA
WP_068815315.1\|1503011_1503401_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.1e-24	50.0
WP_064148680.1\|1503397_1503895_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	2.5e-79	84.2
WP_064782731.1\|1503872_1504142_-\|holin	holin	K7P6H9	Enterobacteria_phage	7.4e-33	77.2
WP_068815318.1\|1504685_1505369_-	antiterminator	I6PDF8	Cronobacter_phage	3.4e-58	52.8
WP_009308007.1\|1505365_1505506_-	YlcG family protein	NA	NA	NA	NA
WP_068815320.1\|1505502_1506141_-	hypothetical protein	H6WRY9	Salmonella_phage	9.2e-74	68.4
WP_068815322.1\|1506133_1506802_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	2.5e-106	80.1
WP_012542614.1\|1506798_1506966_-	NinE family protein	K7P7K0	Enterobacteria_phage	3.5e-09	62.5
WP_068815323.1\|1506946_1507414_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	46.5
WP_071549007.1\|1507695_1507917_-	hypothetical protein	NA	NA	NA	NA
WP_077269509.1\|1508097_1508946_-	DUF551 domain-containing protein	A0A248SKW5	Klebsiella_phage	2.7e-49	93.4
WP_068815324.1\|1508942_1509323_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	1.6e-62	94.2
WP_077269510.1\|1509322_1510156_-	ead/Ea22-like family protein	A0A075B8K3	Enterobacteria_phage	1.1e-26	43.9
WP_046181580.1\|1510152_1510359_-	hypothetical protein	R9TRD3	Aeromonas_phage	1.1e-31	97.1
WP_068815326.1\|1510355_1510757_-	hypothetical protein	R9TME7	Aeromonas_phage	6.7e-06	31.9
WP_064146426.1\|1510753_1511056_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_068815328.1\|1511052_1511901_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	1.2e-89	60.8
WP_068815329.1\|1513064_1513385_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	6.5e-36	67.9
WP_019704103.1\|1513434_1513650_-	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	5.5e-15	60.9
WP_068815331.1\|1513749_1514382_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.0e-33	39.5
WP_008807814.1\|1514818_1515025_+	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_068815333.1\|1515106_1515391_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	9.5e-39	78.7
WP_068815335.1\|1515407_1516154_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.2
WP_068815338.1\|1516150_1516774_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	3.1e-58	60.2
WP_032426563.1\|1516802_1517330_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.6
WP_068815340.1\|1517543_1517888_+	hypothetical protein	NA	NA	NA	NA
WP_068815341.1\|1517880_1518558_+	morphogenetic protein	H2BDG4	Pseudomonas_virus	1.7e-49	47.4
WP_040217354.1\|1518554_1518782_+	hypothetical protein	S4TRP7	Salmonella_phage	1.8e-08	43.2
WP_068815344.1\|1518778_1519000_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
WP_064344914.1\|1518999_1519239_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	7.8e-10	43.6
WP_071549006.1\|1519251_1519587_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068815346.1\|1519463_1520627_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	6.6e-203	86.8
WP_004143017.1\|1521057_1521924_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
1520641:1520687	attR	NA	NA	NA	NA
WP_023279775.1\|1521925_1522138_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|1522183_1523569_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004151319.1\|1523744_1524239_+	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_004178782.1\|1524242_1524965_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_004178781.1\|1525072_1525411_+	hypothetical protein	NA	NA	NA	NA
WP_004178780.1\|1525507_1526017_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_004143002.1\|1526013_1527081_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_068815347.1\|1527192_1528269_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA

DBSCAN-SWA_5

1542317 : 1596936

Salmonella_phage(27.27%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002892205.1\|1542317_1542797_+\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_002892203.1\|1542902_1544555_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_004147385.1\|1544824_1546045_+	MFS transporter	NA	NA	NA	NA
WP_002892197.1\|1546045_1546159_-	hypothetical protein	NA	NA	NA	NA
WP_004217162.1\|1546179_1546302_-	hypothetical protein	NA	NA	NA	NA
WP_002892195.1\|1546270_1547947_+	Kef family K(+) transporter	NA	NA	NA	NA
WP_002892192.1\|1547982_1549287_-	inosine/guanosine kinase	NA	NA	NA	NA
WP_002892189.1\|1549350_1550313_-	ferrochelatase	NA	NA	NA	NA
WP_002892184.1\|1550441_1551086_-	adenylate kinase	NA	NA	NA	NA
WP_004177228.1\|1551308_1553183_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	4.9e-115	36.8
WP_002892177.1\|1553294_1553900_-	recombination protein RecR	NA	NA	NA	NA
WP_002892173.1\|1553899_1554232_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_004147381.1\|1554289_1556197_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	3.0e-43	38.2
WP_004177230.1\|1556289_1556841_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-28	44.5
WP_002892144.1\|1556991_1557369_-	DUF454 family protein	NA	NA	NA	NA
WP_002892142.1\|1557438_1557966_+	primosomal replication protein N''	NA	NA	NA	NA
WP_002892136.1\|1557978_1558152_+	pleiotropic regulatory protein RsmS	NA	NA	NA	NA
WP_023279779.1\|1558219_1559119_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.6e-63	51.2
WP_004177234.1\|1559154_1562502_-	mechanosensitive channel MscK	NA	NA	NA	NA
WP_002892080.1\|1562631_1563282_-	multidrug efflux transporter transcriptional repressor AcrR	NA	NA	NA	NA
WP_004177236.1\|1563424_1564618_+	multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA	NA	NA	NA
WP_002892069.1\|1564640_1567787_+	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.1e-47	22.7
WP_002892066.1\|1568272_1568647_+	Hha toxicity modulator TomB	NA	NA	NA	NA
WP_002892050.1\|1568673_1568892_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_002892030.1\|1569050_1569617_+	maltose O-acetyltransferase	NA	NA	NA	NA
WP_004147370.1\|1569588_1569729_-	hypothetical protein	NA	NA	NA	NA
WP_002892026.1\|1569749_1570220_+	membrane protein	NA	NA	NA	NA
WP_021313732.1\|1570194_1571646_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.6e-12	25.1
WP_002892021.1\|1571746_1572445_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002892018.1\|1572441_1572582_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_002892011.1\|1572581_1572845_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_002892007.1\|1572960_1574031_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.1e-70	42.8
WP_004177240.1\|1574301_1575573_+	maltoporin	NA	NA	NA	NA
WP_002892003.1\|1575709_1576024_-	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_023279781.1\|1576088_1578146_-	beta-galactosidase	NA	NA	NA	NA
WP_064174663.1\|1578177_1579380_-	galactosidase	NA	NA	NA	NA
WP_004204761.1\|1579384_1580236_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_023279783.1\|1580246_1581554_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_023279784.1\|1581616_1582849_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004147361.1\|1582887_1583031_-	hypothetical protein	NA	NA	NA	NA
WP_068815348.1\|1583205_1584315_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.5e-26	35.0
WP_068815349.1\|1584548_1586108_+	EAL domain-containing protein	NA	NA	NA	NA
WP_014342881.1\|1586142_1586388_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_023279787.1\|1586579_1587443_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_068815351.1\|1587487_1588084_-	hypothetical protein	NA	NA	NA	NA
WP_004099053.1\|1588127_1589096_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_001101446.1\|1589390_1590416_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004142688.1\|1592044_1592260_-	hypothetical protein	NA	NA	NA	NA
WP_004147352.1\|1592256_1592514_-	hypothetical protein	NA	NA	NA	NA
WP_001101446.1\|1593422_1594448_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004099053.1\|1594742_1595711_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_068815353.1\|1595967_1596936_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	4.3e-184	98.4

DBSCAN-SWA_6

4499571 : 4562870

Bacillus_phage(21.05%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|4499571_4500435_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_068814719.1\|4500445_4501219_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-26	37.2
WP_004151134.1\|4501460_4502357_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_068814721.1\|4502598_4503960_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	3.9e-207	94.5
WP_004175198.1\|4504278_4505001_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_068814723.1\|4504997_4506476_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.4e-29	28.3
WP_004149057.1\|4506472_4507888_-	MFS transporter	NA	NA	NA	NA
WP_009485875.1\|4507889_4510967_-	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA
WP_004149055.1\|4510967_4514090_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_068814724.1\|4514089_4515328_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_068814726.1\|4515628_4516909_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_001101446.1\|4516940_4517966_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_077269499.1\|4518284_4519253_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_001101446.1\|4519547_4520573_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_021440454.1\|4520990_4521602_-	positive transcription regulator	NA	NA	NA	NA
WP_032411492.1\|4521717_4521858_-	small membrane protein	NA	NA	NA	NA
WP_000019449.1\|4522041_4523022_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	5.2e-185	98.8
WP_004899452.1\|4523294_4523996_-	response regulator transcription factor	NA	NA	NA	NA
WP_068814727.1\|4524010_4525867_-	sensor histidine kinase	NA	NA	NA	NA
WP_016531337.1\|4526155_4527508_-	molecular chaperone	NA	NA	NA	NA
WP_023282839.1\|4527645_4528494_+	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA
WP_002912442.1\|4528608_4529250_+	uridine kinase	A0A1V0SAA3	Catovirus	2.0e-36	39.3
WP_004151145.1\|4529340_4529922_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.1e-31	41.6
WP_031591026.1\|4529952_4531800_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_068814730.1\|4532031_4533615_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	5.0e-36	43.5
WP_031591031.1\|4534374_4535271_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.3e-45	42.6
WP_031591033.1\|4535662_4536292_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_068814731.1\|4537251_4538691_+	capsule assembly Wzi family protein	NA	NA	NA	NA
WP_031591037.1\|4538836_4539970_+	polysaccharide export protein	NA	NA	NA	NA
WP_024177910.1\|4539975_4540410_+	protein-tyrosine-phosphatase	NA	NA	NA	NA
WP_068814732.1\|4540426_4542589_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_068814733.1\|4542661_4544092_+	undecaprenyl-phosphate galactose phosphotransferase WbaP	NA	NA	NA	NA
WP_068814736.1\|4544115_4545579_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_023322974.1\|4545571_4546702_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_031591043.1\|4546710_4547805_+	glycosyltransferase	NA	NA	NA	NA
WP_159080874.1\|4548349_4548775_-	hypothetical protein	NA	NA	NA	NA
WP_004099053.1\|4549400_4550369_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_158414492.1\|4551378_4551540_+	hypothetical protein	NA	NA	NA	NA
WP_023322969.1\|4552471_4553623_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_004099053.1\|4553761_4554730_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_031591050.1\|4554834_4556241_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7
WP_162616940.1\|4556428_4557397_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	9.7e-184	98.1
WP_004180506.1\|4557532_4558948_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_004899416.1\|4558969_4560340_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.1e-31	25.9
WP_031589093.1\|4560503_4561670_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_031589100.1\|4561862_4562870_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.4e-30	28.0

DBSCAN-SWA_7

4667619 : 4677211

Burkholderia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004099053.1\|4667619_4668588_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_002911596.1\|4668767_4669913_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
WP_004148893.1\|4670304_4670571_-	hypothetical protein	NA	NA	NA	NA
WP_004151461.1\|4670451_4670733_+	hypothetical protein	NA	NA	NA	NA
WP_002911594.1\|4670775_4671483_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
WP_014343261.1\|4671559_4672960_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.9e-101	53.0
WP_004200342.1\|4672940_4673435_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	5.7e-31	50.7
WP_004899215.1\|4673409_4674321_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_002911591.1\|4674504_4675416_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_040183072.1\|4675531_4677211_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	6.9e-20	41.1

DBSCAN-SWA_8

4814554 : 4909557

116

Vibrio_phage(27.85%)

protease,tail,plate,capsid,integrase,holin,portal,head,terminase,transposase

attL 4824662:4824679|attR 4880760:4880777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175481.1\|4814554_4815301_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_014343226.1\|4815780_4816638_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_004200323.1\|4816793_4817774_+	fatty acid desaturase	NA	NA	NA	NA
WP_004189318.1\|4817766_4818567_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_004145488.1\|4818604_4818727_-	nitrilotriacetate monooxygenase	NA	NA	NA	NA
WP_014343223.1\|4819024_4819168_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|4819344_4820286_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|4820379_4821369_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004200322.1\|4821394_4822726_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910759.1\|4822753_4823962_+	propionate kinase	NA	NA	NA	NA
WP_068814843.1\|4823990_4826285_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.5e-158	41.7
4824662:4824679	attL	NA	NA	NA	NA
WP_004225356.1\|4826336_4826483_-	hypothetical protein	NA	NA	NA	NA
WP_162616953.1\|4826772_4827831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004175489.1\|4827940_4828855_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_068814845.1\|4828864_4830151_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_004148803.1\|4830147_4831023_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	1.5e-10	25.5
WP_068814850.1\|4831019_4831739_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.0
WP_002910720.1\|4831744_4832638_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004180410.1\|4832921_4834565_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910717.1\|4834614_4835091_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|4835189_4836116_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004175494.1\|4836419_4837715_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_162616943.1\|4837726_4838536_+	solute-binding protein	NA	NA	NA	NA
WP_065803155.1\|4838776_4840039_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	1.5e-232	94.8
WP_016244760.1\|4840081_4840327_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	3.8e-36	93.4
WP_029497927.1\|4840544_4841294_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	2.3e-84	60.3
WP_023312753.1\|4841290_4841515_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
WP_123640128.1\|4841746_4841968_-	hypothetical protein	NA	NA	NA	NA
WP_048265752.1\|4842038_4842332_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_159080877.1\|4843000_4843144_-	hypothetical protein	NA	NA	NA	NA
WP_068814854.1\|4843485_4844082_-	helix-turn-helix transcriptional regulator	K7P850	Enterobacteria_phage	4.1e-07	27.1
WP_048289165.1\|4844190_4844403_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_068814858.1\|4844423_4844744_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
WP_047666494.1\|4844939_4845194_+	hypothetical protein	NA	NA	NA	NA
WP_068814860.1\|4845190_4846285_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	9.7e-31	40.3
WP_068814862.1\|4846311_4846707_+	hypothetical protein	NA	NA	NA	NA
WP_023158880.1\|4846706_4846928_+	hypothetical protein	NA	NA	NA	NA
WP_068814864.1\|4846920_4847706_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.5e-62	52.1
WP_040209280.1\|4848357_4848621_+	DUF4752 family protein	T1S9K2	Salmonella_phage	2.2e-29	75.6
WP_068814868.1\|4849062_4849338_+	hypothetical protein	NA	NA	NA	NA
WP_064161787.1\|4850202_4850937_+	hypothetical protein	NA	NA	NA	NA
WP_065520066.1\|4851968_4852562_+	hypothetical protein	A0A0M4RU10	Salmonella_phage	1.2e-40	63.2
WP_068814873.1\|4852558_4853329_+	dcm methylase	D5LH17	Escherichia_phage	3.0e-63	51.2
WP_077269504.1\|4853325_4853970_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.2e-102	80.5
WP_068814875.1\|4853966_4854566_+	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-65	58.9
WP_068814876.1\|4855203_4855473_+\|holin	holin	K7P6H9	Enterobacteria_phage	8.1e-32	77.2
WP_068815639.1\|4855450_4855951_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	5.9e-76	84.4
WP_068814877.1\|4855947_4856439_+	hypothetical protein	Q2NPG0	Xanthomonas_virus	7.4e-31	43.9
WP_068814879.1\|4856540_4856891_+	hypothetical protein	H2EQH5	Salmonella_phage	5.5e-12	39.7
WP_162616932.1\|4857202_4857574_-	hypothetical protein	NA	NA	NA	NA
WP_071549025.1\|4857522_4857873_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	4.6e-51	78.4
WP_004884285.1\|4858002_4858497_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.2e-81	92.0
WP_068814881.1\|4858493_4860224_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	2.3e-300	83.0
WP_068814883.1\|4860418_4861648_+\|portal	phage portal protein	U5P411	Shigella_phage	1.3e-201	81.7
WP_068814885.1\|4861634_4862288_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	9.3e-106	87.9
WP_068814887.1\|4862302_4863511_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	2.2e-193	84.2
WP_077269505.1\|4863537_4863753_+	hypothetical protein	M1FN89	Enterobacteria_phage	7.2e-07	42.4
WP_040186339.1\|4863749_4864070_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-15	39.8
WP_004899632.1\|4864139_4864337_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
WP_004899631.1\|4864338_4864671_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	2.9e-55	98.2
WP_032437723.1\|4864663_4865203_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	3.7e-92	95.5
WP_068814891.1\|4865199_4865565_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	5.4e-63	95.0
WP_000115125.1\|4865621_4866113_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_001177591.1\|4866156_4866510_+\|tail	phage tail assembly protein	A0A286S1N4	Klebsiella_phage	4.9e-61	99.1
WP_031591515.1\|4866542_4866806_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	1.0e-42	96.6
WP_068814894.1\|4866870_4867338_+	hypothetical protein	NA	NA	NA	NA
WP_068814896.1\|4867382_4869827_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	1.1e-252	61.3
WP_004207036.1\|4869826_4870297_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.3e-64	67.7
WP_068814899.1\|4870293_4870776_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	2.1e-78	90.6
WP_064143746.1\|4870786_4871167_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	6.9e-69	94.4
WP_159080878.1\|4871163_4871304_+	hypothetical protein	A0A286S259	Klebsiella_phage	1.8e-19	93.3
WP_048981108.1\|4871530_4872094_-	transcriptional regulator	NA	NA	NA	NA
WP_049090873.1\|4872275_4872500_+	transcriptional regulator	M1PVU4	Vibrio_phage	1.5e-15	57.1
WP_004114537.1\|4874632_4875580_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	2.9e-140	79.4
WP_004114539.1\|4875584_4875824_+	hypothetical protein	NA	NA	NA	NA
WP_004114541.1\|4875826_4876114_+	HTH domain-containing protein	C9DGL7	Escherichia_phage	3.5e-17	48.3
WP_004099053.1\|4876678_4877647_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8
WP_068814901.1\|4877893_4878391_+	hypothetical protein	A0A0A7RUP4	Clostridium_phage	1.9e-05	36.0
WP_068814903.1\|4878350_4878827_+	hypothetical protein	K7PHA5	Enterobacterial_phage	3.3e-12	37.2
WP_068814905.1\|4878823_4879378_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	2.4e-38	46.7
WP_064176649.1\|4879374_4879764_+	transcriptional regulator	A0A0C4UR27	Shigella_phage	4.6e-36	58.1
WP_141769813.1\|4879772_4880036_+	hypothetical protein	NA	NA	NA	NA
WP_001310555.1\|4880040_4881057_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
4880760:4880777	attR	NA	NA	NA	NA
WP_068814908.1\|4881552_4882131_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	5.1e-39	46.0
WP_019704473.1\|4882133_4882352_+	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.7e-24	70.8
WP_068814910.1\|4882344_4882752_+	hypothetical protein	NA	NA	NA	NA
WP_068814912.1\|4882739_4883345_+	hypothetical protein	M4MB79	Vibrio_phage	1.2e-22	39.8
WP_068814914.1\|4883341_4883572_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_004114566.1\|4883552_4883855_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	4.3e-13	42.6
WP_004114568.1\|4883864_4884152_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	8.4e-27	64.5
WP_068814916.1\|4884154_4884430_+	hypothetical protein	NA	NA	NA	NA
WP_004114570.1\|4884419_4884998_+	DUF3486 family protein	M4MCR3	Vibrio_phage	1.8e-52	59.2
WP_068814917.1\|4884994_4886584_+	hypothetical protein	M4MHG0	Vibrio_phage	2.7e-199	68.5
WP_068814918.1\|4886583_4888155_+	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	4.6e-159	56.2
WP_023301732.1\|4888147_4888990_+	hypothetical protein	M1PVV7	Vibrio_phage	1.7e-88	56.9
WP_108676103.1\|4889178_4890195_+	peptidase	M1Q578	Vibrio_phage	3.9e-74	49.1
WP_068814921.1\|4890197_4891097_+\|head	phage head protein	M4MB71	Vibrio_phage	1.5e-101	59.4
WP_068814923.1\|4891173_4891680_+	hypothetical protein	NA	NA	NA	NA
WP_004114585.1\|4891679_4892120_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	4.9e-34	47.9
WP_048981146.1\|4892119_4892662_+	phage morphogeneis protein	A0A2I7S9D7	Vibrio_phage	2.9e-60	64.2
WP_068814926.1\|4892658_4893270_+	hypothetical protein	M1PJ94	Vibrio_phage	1.4e-39	40.8
WP_049086219.1\|4893272_4893482_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_068814930.1\|4893483_4894965_+\|tail	phage tail protein	M1Q565	Vibrio_phage	9.6e-167	60.2
WP_068814932.1\|4894974_4895328_+\|tail	phage tail protein	A0A2P1A4D6	Alteromonadaceae_phage	7.7e-14	34.2
WP_068814934.1\|4895331_4895715_+	hypothetical protein	A0A2P9JZJ9	Alteromonadaceae_phage	3.4e-15	40.5
WP_068814936.1\|4895813_4897622_+\|tail	phage tail protein	M4MHE6	Vibrio_phage	3.8e-64	31.4
WP_068814938.1\|4897621_4898878_+	multidrug DMT transporter	M4M9N2	Vibrio_phage	2.2e-87	42.0
WP_068814940.1\|4898870_4899962_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.3e-91	49.0
WP_068814944.1\|4899952_4900492_+\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	1.1e-32	44.4
WP_068814946.1\|4900488_4900941_+	hypothetical protein	A0A2I7S9F0	Vibrio_phage	6.6e-26	43.4
WP_068814950.1\|4900927_4902004_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	1.0e-101	52.0
WP_068814952.1\|4901988_4902573_+	YmfQ family protein	M4M9M8	Vibrio_phage	4.8e-45	47.7
WP_068814954.1\|4902575_4903388_+\|tail	tail fiber protein	X2KTY7	Enterobacteria_phage	6.9e-26	66.7
WP_068814956.1\|4903387_4904263_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.2e-25	37.0
WP_068814961.1\|4904272_4906258_+	hypothetical protein	A0A1J0MHZ5	Klebsiella_phage	1.7e-126	45.2
WP_068814965.1\|4906623_4909557_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP029723

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174 : 24822

Escherichia_phage(45.45%)

transposase,integrase,protease

attL 12619:12634|attR 31166:31181

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020324562.1\|174_879_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_063840321.1\|1022_1577_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001067855.1\|1768_2473_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001550555.1\|2618_2909_-	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	4.8e-06	40.6
WP_077625545.1\|3003_3504_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|3480_4185_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|4425_5130_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000427619.1\|7560_8565_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|8746_8923_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_022631488.1\|9252_10068_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	4.5e-09	27.0
WP_001067855.1\|10221_10926_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_009310051.1\|11107_11371_-	hypothetical protein	NA	NA	NA	NA
WP_058650054.1\|11937_12282_+	hypothetical protein	NA	NA	NA	NA
WP_016338367.1\|12389_13025_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
12619:12634	attL	NA	NA	NA	NA
WP_016338368.1\|13024_15133_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.4e-38	27.3
WP_016338369.1\|15122_16400_-	HlyD family secretion protein	NA	NA	NA	NA
WP_000754566.1\|17976_18393_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261276.1\|18389_18620_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_004153649.1\|19284_19491_+	hypothetical protein	NA	NA	NA	NA
WP_004152336.1\|19536_19845_+	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|19872_20202_+	hypothetical protein	NA	NA	NA	NA
WP_004171440.1\|20227_20626_+	hypothetical protein	NA	NA	NA	NA
WP_004152339.1\|20632_20965_+	hypothetical protein	NA	NA	NA	NA
WP_004152340.1\|20964_21747_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_011977773.1\|22638_22869_-	hypothetical protein	NA	NA	NA	NA
WP_004152341.1\|22960_23434_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004152342.1\|23553_24822_-\|transposase	ISL3-like element ISKpn25 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
31166:31181	attR	NA	NA	NA	NA

DBSCAN-SWA_2

29397 : 41489

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152345.1\|29397_31425_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
WP_004227314.1\|31536_31752_-	hypothetical protein	NA	NA	NA	NA
WP_004152347.1\|31976_32309_-	hypothetical protein	NA	NA	NA	NA
WP_004152348.1\|32685_33660_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152349.1\|33656_34862_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152350.1\|35183_36080_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152351.1\|36480_37752_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152352.1\|37751_38183_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152353.1\|38414_39386_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152354.1\|39388_40060_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|40120_40351_+	hypothetical protein	NA	NA	NA	NA
WP_014343518.1\|40469_40586_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|40787_41489_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

DBSCAN-SWA_3

53680 : 108826

uncultured_Caudovirales_phage(25.0%)

transposase,integrase

attL 69820:69843|attR 108893:108916

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004199413.1\|53680_56698_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7
WP_004152379.1\|61059_61785_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	7.1e-06	28.8
WP_004152380.1\|61856_62450_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_015060010.1\|62610_63213_+	hypothetical protein	NA	NA	NA	NA
WP_004153014.1\|63262_63907_+	hypothetical protein	NA	NA	NA	NA
WP_004152382.1\|63962_64613_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_004152383.1\|64609_64918_+	hypothetical protein	K7PKY8	Enterobacterial_phage	1.1e-08	31.7
WP_001067855.1\|65294_65999_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001277466.1\|66098_66464_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000522996.1\|68194_68620_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|68647_68923_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_004200999.1\|68938_69304_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|69375_69831_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
69820:69843	attL	NA	NA	NA	NA
WP_001776119.1\|70090_70618_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
WP_001776120.1\|70650_71082_-	hypothetical protein	NA	NA	NA	NA
WP_001776122.1\|71561_72527_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-58	42.7
WP_004178082.1\|72996_74484_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_000776034.1\|74889_75321_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_004118291.1\|75320_76592_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_000064120.1\|76673_77648_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_000368714.1\|77647_78853_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000339857.1\|79267_79537_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|79893_80760_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_032409716.1\|81294_81399_+	hypothetical protein	NA	NA	NA	NA
WP_000764642.1\|81527_81785_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|81842_82619_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000129823.1\|82615_83359_-	hypothetical protein	NA	NA	NA	NA
WP_000493378.1\|83409_83760_-	hypothetical protein	NA	NA	NA	NA
WP_074193041.1\|83903_84365_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|84321_84552_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|84844_85549_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004118538.1\|86198_86531_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_011977829.1\|86884_88033_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.7e-123	65.9
WP_021740570.1\|88157_91175_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	7.2e-52	24.7
WP_004118534.1\|91548_91923_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
WP_001549953.1\|92451_93648_+	MFS transporter	NA	NA	NA	NA
WP_004118529.1\|93719_94547_-	universal stress protein	NA	NA	NA	NA
WP_001549885.1\|94565_96044_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_001549886.1\|96527_96881_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549887.1\|96976_98260_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549888.1\|98309_98738_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_000427614.1\|99401_100406_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_003100847.1\|100484_101042_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|101035_101407_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|101403_101904_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|101900_102227_-	hypothetical protein	NA	NA	NA	NA
WP_003465043.1\|102481_102838_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001293886.1\|102827_103229_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|103225_103516_-	nucleotidyltransferase	NA	NA	NA	NA
WP_000845048.1\|103822_104836_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001206316.1\|104981_105773_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|105936_106284_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|106277_107117_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000427614.1\|107821_108826_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
108893:108916	attR	NA	NA	NA	NA

DBSCAN-SWA_4

126292 : 135249

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201739.1\|126292_126676_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
WP_000609174.1\|126672_127020_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
WP_001000409.1\|127069_128605_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-260	87.7
WP_015058217.1\|129363_129573_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	2.9e-13	50.9
WP_068814615.1\|129640_132610_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	8.5e-21	23.8
WP_015056403.1\|132609_135249_+	hypothetical protein	A0A1B1IUG5	uncultured_Mediterranean_phage	1.9e-19	20.5

DBSCAN-SWA_5

161610 : 177829

Burkholderia_phage(33.33%)

transposase,integrase

attL 157642:157686|attR 171844:171888

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
157642:157686	attL	NA	NA	NA	NA
WP_004201235.1\|161610_163080_-	HNH endonuclease	G0X580	Salmonella_phage	5.5e-21	51.3
WP_001749988.1\|163836_164406_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_000845048.1\|164798_165812_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|165967_166441_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|166661_166928_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|167070_167835_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|168095_169310_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|169343_170777_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001749967.1\|171158_171365_-	hypothetical protein	NA	NA	NA	NA
WP_071549088.1\|171369_171882_-	restriction endonuclease	NA	NA	NA	NA
WP_001067855.1\|172683_173388_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
171844:171888	attR	NA	NA	NA	NA
WP_087759376.1\|173485_174605_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.0e-52	43.2
WP_022631495.1\|174652_175291_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	8.3e-75	65.5
WP_004098982.1\|175702_176578_+	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
WP_004098977.1\|177202_177829_+	ParA family plasmid-partitioning AAA ATPase	E5FFJ3	Burkholderia_phage	3.8e-16	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029724

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029722

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP029723

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection